Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1023

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3272
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30

Warning! 28 characters in sequence are not A, C, G, or T


Found at i:791 original size:16 final size:16

Alignment explanation


    Indices: 770--800  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        760 TCTTACCGAG

                            
        770 GCCTATAACAGCACAT
          1 GCCTATAACAGCACAT

                    *      
        786 GCCTATAATAGCACA
          1 GCCTATAACAGCACA

        801 AACACAATTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.39, C:0.29, G:0.13, T:0.19


Consensus pattern (16 bp):   
GCCTATAACAGCACAT

Found at i:2874 original size:18 final size:18

Alignment explanation


    Indices: 2833--2867  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2823 GTCAAGTGCG

                  *           
       2833 TATCCTGACCCTTATATT
          1 TATCCTAACCCTTATATT

                             
       2851 TATCCTAACCCTTATAT
          1 TATCCTAACCCTTATAT

       2868 GTTTCCTTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.26, C:0.29, G:0.03, T:0.43


Consensus pattern (18 bp):   
TATCCTAACCCTTATATT
Done.