Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold84
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4163231
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 246351 characters in sequence are not A, C, G, or T
File 7 of 11
Found at i:2679583 original size:32 final size:32
Alignment explanation
Indices: 2679279--2679594 Score: 380
Period size: 32 Copynumber: 9.9 Consensus size: 32
2679269 GCTGCAATAC
* **
2679279 TACTAATGGCTTTGTTTCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
2679311 TATTGATGGCTTTGTGTCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
2679343 TACTGATGGCTTTGTACTGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * ***
2679375 TACTGATAGATTTGTGATAATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
**
2679407 TACTGATGGCTTTGTGTTGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
2679439 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* ** * *
2679471 TATTGATGGCTTTGTGCTAATCATTTTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
2679503 TACTGATGGCTCTGTACTGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * *
2679535 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
2679567 TACTGATGGCTTTGTGCCGAACATATTA
1 TACTGATGGCTTTGTGCCGATCATATTA
2679595 TTGTTGTGAC
Statistics
Matches: 244, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 244 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:2685425 original size:47 final size:47
Alignment explanation
Indices: 2685371--2685460 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
2685361 TCAAGAAAAT
*
2685371 CAAGAAACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTGGTC
1 CAAGAAACCGAATCTTGCAACTAAGGCGCATTGGATCTCAGTTGGTC
2685418 CAAGAAACCGAATCTTGCAACTAAGGCGCATTGGATCTCAGTT
1 CAAGAAACCGAATCTTGCAACTAAGGCGCATTGGATCTCAGTT
2685461 ACGAGCATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (47 bp):
CAAGAAACCGAATCTTGCAACTAAGGCGCATTGGATCTCAGTTGGTC
Found at i:2696062 original size:51 final size:50
Alignment explanation
Indices: 2695939--2696127 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 50
2695929 ATTATTATCA
* * * * * *
2695939 TTCGATACACGTAGTAGCCTTCACGTAGTACTACACACGTGATC-AAACTT
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACAAGTGACCAAAAC-C
* *
2695989 TTCGGTTCACGTAGTAGCCTGCATATAGTACTACACAAGTGACCAAAACC
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACAAGTGACCAAAACC
* * ** *
2696039 TTCCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATC
1 TT-CGGTACACGTAGTAGCCTGCACATAGTACTACACAAGTGACCAAAACC
* *
2696090 TATCGATACACGTAGTAGCCTGCACTTAGTACTACACA
1 T-TCGGTACACGTAGTAGCCTGCACATAGTACTACACA
2696128 CGTGTTGATA
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
50 39 0.33
51 78 0.66
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTGCACATAGTACTACACAAGTGACCAAAACC
Found at i:2711307 original size:10 final size:10
Alignment explanation
Indices: 2711292--2711316 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2711282 TAATATGTGA
2711292 ATGGAAGTTT
1 ATGGAAGTTT
2711302 ATGGAAGTTT
1 ATGGAAGTTT
2711312 ATGGA
1 ATGGA
2711317 TTCATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (10 bp):
ATGGAAGTTT
Found at i:2721287 original size:36 final size:38
Alignment explanation
Indices: 2721246--2721330 Score: 111
Period size: 41 Copynumber: 2.2 Consensus size: 38
2721236 TATTCCAAAA
2721246 ATAATATTATTTT-AATAG-TTTAATATTAAATTTAAT
1 ATAATATTATTTTAAATAGTTTTAATATTAAATTTAAT
* *
2721282 TTAATATTTTTTTAAATAGTATTTTTAATATTAAATTTAAT
1 ATAATATTATTTTAAATAG---TTTTAATATTAAATTTAAT
2721323 ATAATATT
1 ATAATATT
2721331 TTTCTTGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
36 11 0.27
37 5 0.12
41 25 0.61
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.55
Consensus pattern (38 bp):
ATAATATTATTTTAAATAGTTTTAATATTAAATTTAAT
Found at i:2729929 original size:16 final size:18
Alignment explanation
Indices: 2729903--2729935 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2729893 TAGAATTGGG
2729903 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
2729920 TTGA-AAAATTAATTTA
1 TTGAGAAAATTAATTTA
2729936 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:2734330 original size:41 final size:40
Alignment explanation
Indices: 2734273--2734393 Score: 118
Period size: 41 Copynumber: 3.0 Consensus size: 40
2734263 CTTGAAATGA
* * *
2734273 TACACTGGCACGAAGCCTGCTAGGCCTGAAGCCTGATTCAG
1 TACACCGGCATGAAGCCTGCTAGGCCTGAAGCCTGAAT-AG
* * * * *
2734314 TACACCGGCATGAAGCCTGCTAGACATAAAGTCTGAAATAT
1 TACACCGGCATGAAGCCTGCTAGGCCTGAAGCCTG-AATAG
* *
2734355 TTCACCGGCATTAAGCCTGCTAGGCACTG-AGCCTGAATA
1 TACACCGGCATGAAGCCTGCTAGGC-CTGAAGCCTGAATA
2734394 TCTCGGAGAC
Statistics
Matches: 64, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
40 4 0.06
41 57 0.89
42 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.21
Consensus pattern (40 bp):
TACACCGGCATGAAGCCTGCTAGGCCTGAAGCCTGAATAG
Found at i:2737786 original size:3 final size:3
Alignment explanation
Indices: 2737773--2737825 Score: 97
Period size: 3 Copynumber: 17.3 Consensus size: 3
2737763 TAATTTCTGC
2737773 TAT TCAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2737819 TAT TAT T
1 TAT TAT T
2737826 TCTTTTAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:2738313 original size:22 final size:21
Alignment explanation
Indices: 2738282--2738340 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
2738272 AAAAAGAAAC
*
2738282 AGAGATAGAAACGAAAACAGAA
1 AGAGAAAGAAA-GAAAACAGAA
* *
2738304 AGGGAAAGAAAGAAAAAGAGAA
1 AGAGAAAGAAAG-AAAACAGAA
2738326 AGAGAAAGAAAGAAA
1 AGAGAAAGAAAGAAA
2738341 GGAGAAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.12
22 28 0.88
ACGTcount: A:0.68, C:0.03, G:0.27, T:0.02
Consensus pattern (21 bp):
AGAGAAAGAAAGAAAACAGAA
Found at i:2742258 original size:27 final size:27
Alignment explanation
Indices: 2742228--2742398 Score: 89
Period size: 27 Copynumber: 6.6 Consensus size: 27
2742218 CCGATTTGTG
*
2742228 AAATTACTGAAATA-CTCCCGGTGTGTA
1 AAATTACTGAAATACCT-CCAGTGTGTA
*
2742255 AAATTACTGAAATACCTCCAGTTTGTA
1 AAATTACTGAAATACCTCCAGTGTGTA
* * * * *
2742282 AAATTACCGAAACACC-CCTAATTTGTG
1 AAATTACTGAAATACCTCC-AGTGTGTA
2742309 AAATTA-TCGAAATACC-CCTAGT-T-T-
1 AAATTACT-GAAATACCTCC-AGTGTGTA
*
2742333 -TATTA---AAATACC-CTCAGTGTGTA
1 AAATTACTGAAATACCTC-CAGTGTGTA
* * * *
2742356 AAATTATTGAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCTCCAGTGTGTA
2742383 AAATTA-TCGAAATACC
1 AAATTACT-GAAATACC
2742399 CTTGATTTGT
Statistics
Matches: 118, Mismatches: 13, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
20 11 0.09
21 2 0.02
22 1 0.01
23 4 0.03
24 4 0.03
25 1 0.01
26 4 0.03
27 88 0.75
28 3 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCTCCAGTGTGTA
Found at i:2742313 original size:54 final size:54
Alignment explanation
Indices: 2742255--2742453 Score: 193
Period size: 54 Copynumber: 3.8 Consensus size: 54
2742245 CCGGTGTGTA
* *
2742255 AAATTACTGAAATACCTCC-AGTTTGTAAAATTACCGAAACACCCCTAATTTGTG
1 AAATTACTGAAATACC-CCTAGTTTGTAAAATTATCGAAATACCCCTAATTTGTG
* * *
2742309 AAATTA-TCGAAATACCCCTAGTTT-T---ATTA---AAATA-CCCTCAGTGTGTA
1 AAATTACT-GAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCT-AATTTGTG
* * * * *
2742356 AAATTATTGAAATACCCCCAATTTGTAAAATTATCGAAATACCCTTGATTTGTG
1 AAATTACTGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCTAATTTGTG
* *
2742410 AAATTACCGAAATACCCCTAGTTTGTGAAATTATCGAAATACCC
1 AAATTACTGAAATACCCCTAGTTTGTAAAATTATCGAAATACCC
2742454 TTATAGGTTA
Statistics
Matches: 117, Mismatches: 16, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
46 4 0.03
47 29 0.25
48 2 0.02
50 4 0.03
51 4 0.03
53 4 0.03
54 67 0.57
55 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCTAATTTGTG
Found at i:2742412 original size:101 final size:101
Alignment explanation
Indices: 2742248--2742433 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
2742238 AATACTCCCG
* *
2742248 GTGTGTAAAATTACTGAAATACCTCCAGTTTGTAAAATTACCGAAACACCCCTAATTTGTGAAAT
1 GTGTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACCGAAACACCCCTAATTTGTGAAAT
*
2742313 TATCGAAATACCCCTAGTTTTATTAAAATACCCTCA
66 TACCGAAATACCCCTAGTTTTATTAAAATACCCTCA
* * * * *
2742349 GTGTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTATCGAAATACCCTTGATTTGTGAAAT
1 GTGTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACCGAAACACCCCTAATTTGTGAAAT
2742414 TACCGAAATACCCCTAGTTT
66 TACCGAAATACCCCTAGTTT
2742434 GTGAAATTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (101 bp):
GTGTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACCGAAACACCCCTAATTTGTGAAAT
TACCGAAATACCCCTAGTTTTATTAAAATACCCTCA
Found at i:2742467 original size:27 final size:26
Alignment explanation
Indices: 2742251--2742457 Score: 135
Period size: 27 Copynumber: 8.0 Consensus size: 26
2742241 ACTCCCGGTG
*
2742251 TGTAAAATTA-CTGAAATA-CCTCCAGTT
1 TGTAAAATTATC-GAAATACCCT-TA-TT
* * *
2742278 TGTAAAATTACCGAAACACCCCTAATT
1 TGTAAAATTATCGAAATA-CCCTTATT
* *
2742305 TGTGAAATTATCGAAATACCCCTAGTT
1 TGTAAAATTATCGAAATACCCTTA-TT
* *
2742332 T-T---ATTA---AAATACCCTCAGTG
1 TGTAAAATTATCGAAATACCCTTA-TT
* **
2742352 TGTAAAATTATTGAAATACCCCCAATT
1 TGTAAAATTATCGAAATA-CCCTTATT
2742379 TGTAAAATTATCGAAATACCCTTGATT
1 TGTAAAATTATCGAAATACCCTT-ATT
* * *
2742406 TGTGAAATTACCGAAATACCCCTAGTT
1 TGTAAAATTATCGAAATACCCTTA-TT
*
2742433 TGTGAAATTATCGAAATACCCTTAT
1 TGTAAAATTATCGAAATACCCTTAT
2742458 AGGTTAAAAT
Statistics
Matches: 145, Mismatches: 21, Indels: 29
0.74 0.11 0.15
Matches are distributed among these distances:
20 12 0.08
21 1 0.01
23 4 0.03
24 4 0.03
26 10 0.07
27 105 0.72
28 6 0.04
29 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (26 bp):
TGTAAAATTATCGAAATACCCTTATT
Found at i:2742701 original size:27 final size:27
Alignment explanation
Indices: 2742660--2742717 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
2742650 ATGGAGGAAG
2742660 TACTATTACGAGTGGCTCTGCCACATA
1 TACTATTACGAGTGGCTCTGCCACATA
*
2742687 TACTATTACTG-GTGGCTTTGCCACATA
1 TACTATTAC-GAGTGGCTCTGCCACATA
2742714 TACT
1 TACT
2742718 GTACTGGCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (27 bp):
TACTATTACGAGTGGCTCTGCCACATA
Found at i:2748633 original size:2 final size:2
Alignment explanation
Indices: 2748626--2748652 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2748616 TCATGGGTGC
2748626 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
2748653 AATTTAGGGN
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2749606 original size:19 final size:20
Alignment explanation
Indices: 2749566--2749608 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
2749556 TCATGTCAAT
*
2749566 AAATAATTTAAAAATTATAA
1 AAATAATTTAAAAATTAAAA
2749586 AAAT-ATTTAAAGAA-TAAAA
1 AAATAATTTAAA-AATTAAAA
2749605 AAAT
1 AAAT
2749609 TAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATAATTTAAAAATTAAAA
Found at i:2750291 original size:18 final size:18
Alignment explanation
Indices: 2750268--2750303 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2750258 CTATTCACCT
*
2750268 AAACCCAAGTATCCAACC
1 AAACCCAAGTACCCAACC
*
2750286 AAACCCAATTACCCAACC
1 AAACCCAAGTACCCAACC
2750304 CAATCATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.42, G:0.03, T:0.11
Consensus pattern (18 bp):
AAACCCAAGTACCCAACC
Found at i:2751205 original size:56 final size:57
Alignment explanation
Indices: 2751116--2751395 Score: 306
Period size: 55 Copynumber: 5.0 Consensus size: 57
2751106 GTTGTTACTG
* *
2751116 TTTTCAT--TGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCA
1 TTTTCATACTGTCTTAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCA
* *
2751171 TTTTCATACTATCTTAAATTGAA-TGAAGCTGTTGTTTTAGTGTTTCAAA-TGAGCA
1 TTTTCATACTGTCTTAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCA
* * *
2751226 TTTTCATACTGTCATAAATTGAATTAAAGCTGGTGTTTTAGTGTATCAAATTGAGCA
1 TTTTCATACTGTCTTAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCA
* * * * * *
2751283 TTTTCATGCTGTCTTAAATTAAATT-AAGCTGCT-ATTTAATGTTTCAAATTGAGTA
1 TTTTCATACTGTCTTAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCA
* * * * * * * *
2751338 TTATT-ATGCTGTCCTAAATTAAATTAAAG-TGTTGCTTCAGTGTCTCAAAGTAAGCA
1 TT-TTCATACTGTCTTAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCA
2751394 TT
1 TT
2751396 ATTATGCTAT
Statistics
Matches: 192, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
55 76 0.40
56 76 0.40
57 40 0.21
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.42
Consensus pattern (57 bp):
TTTTCATACTGTCTTAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCA
Found at i:2751350 original size:112 final size:112
Alignment explanation
Indices: 2751116--2751366 Score: 330
Period size: 112 Copynumber: 2.3 Consensus size: 112
2751106 GTTGTTACTG
* *
2751116 TTTTCAT--TGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCATTTTCATA
1 TTTTCATACTGTCATAAATTGAATTAAAGCTGGTGTTTGAGTGTATCAAATTGAGCATTTTCATA
* * * *
2751179 CTATCTTAAATTGAATGAAGCTGTTGTTTTAGTGTTTCAAATGAGCA
66 CTATCTTAAATTAAATGAAGCTGCTGATTTAATGTTTCAAATGAGCA
* *
2751226 TTTTCATACTGTCATAAATTGAATTAAAGCTGGTGTTTTAGTGTATCAAATTGAGCATTTTCATG
1 TTTTCATACTGTCATAAATTGAATTAAAGCTGGTGTTTGAGTGTATCAAATTGAGCATTTTCATA
* * *
2751291 CTGTCTTAAATTAAATTAAGCTGCT-ATTTAATGTTTCAAATTGAGTA
66 CTATCTTAAATTAAATGAAGCTGCTGATTTAATGTTTCAAA-TGAGCA
* * *
2751338 TTATT-ATGCTGTCCTAAATTAAATTAAAG
1 TT-TTCATACTGTCATAAATTGAATTAAAG
2751367 TGTTGCTTCA
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
110 7 0.06
111 13 0.11
112 101 0.82
113 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (112 bp):
TTTTCATACTGTCATAAATTGAATTAAAGCTGGTGTTTGAGTGTATCAAATTGAGCATTTTCATA
CTATCTTAAATTAAATGAAGCTGCTGATTTAATGTTTCAAATGAGCA
Found at i:2760548 original size:18 final size:18
Alignment explanation
Indices: 2760525--2760560 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2760515 CTATTCACCT
*
2760525 AAACCCAAGTATCCAACC
1 AAACCCAAGTACCCAACC
*
2760543 AAACCCAATTACCCAACC
1 AAACCCAAGTACCCAACC
2760561 CAATCATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.42, G:0.03, T:0.11
Consensus pattern (18 bp):
AAACCCAAGTACCCAACC
Found at i:2761530 original size:57 final size:57
Alignment explanation
Indices: 2761371--2761657 Score: 291
Period size: 56 Copynumber: 5.1 Consensus size: 57
2761361 TTACTGTTTG
* * * *
2761371 CATGCTGTCATAGATTGAATTAAAGTTGTTGTTTAAGTGTTTCAAATTTAGCATTTT
1 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
2761428 CATACTGTCTTAAATTGAA-TCAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
1 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
2761484 CATGTTGTCATAAATTGAATTAAAGCTGGTGTTTTAGT-TTATCAAATTGACCATTTT
1 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTTAGTGTT-TCAAATTGAGCATTTT
* * * * * *
2761541 CATGCTGTCTTAAATTAAATT-AAGCTGCT-ATTTAATGTTTCAAATTGAGTATTATT
1 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATT-TT
* * * * * * *
2761597 -ATGCTGTCCTAAATTAAATTAAAG-TGTTGCTTCAGTGTCTCAAAGTAAGCATTATT
1 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATT-TT
2761653 -ATGCT
1 CATGCT
2761658 ATTGAAAAAT
Statistics
Matches: 194, Mismatches: 30, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
55 39 0.20
56 90 0.46
57 65 0.34
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (57 bp):
CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
Found at i:2764979 original size:27 final size:27
Alignment explanation
Indices: 2764961--2765185 Score: 326
Period size: 27 Copynumber: 8.3 Consensus size: 27
2764951 GGGTATAACA
* *
2764961 GTCATTTTACCCAATAGGGGTATTT-G
1 GTCATTTTACCCTATGGGGGTATTTCG
*
2764987 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
2765014 GTCATTCTAGCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
2765041 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
2765068 ATCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
2765095 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
2765122 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
2765149 GTCATTTTACCCTATGGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGGTATTTCG
*
2765177 ATCATTTTA
1 GTCATTTTA
2765186 TTAACCTCTC
Statistics
Matches: 176, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.12
27 135 0.77
28 19 0.11
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:2774794 original size:19 final size:20
Alignment explanation
Indices: 2774756--2774795 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
2774746 ACAATTATTT
*
2774756 TCCAATCCGAACTGCATAAA
1 TCCAATCCGAAATGCATAAA
*
2774776 TCCAATCC-AAATTCATAAA
1 TCCAATCCGAAATGCATAAA
2774795 T
1 T
2774796 AGAAGCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.25
Consensus pattern (20 bp):
TCCAATCCGAAATGCATAAA
Found at i:2776447 original size:39 final size:39
Alignment explanation
Indices: 2776393--2776470 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
2776383 AAATGAAGTT
* **
2776393 ACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATG
1 ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
2776432 ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
1 ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
2776471 GAAGGGAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.55, C:0.24, G:0.13, T:0.08
Consensus pattern (39 bp):
ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
Found at i:2776845 original size:39 final size:39
Alignment explanation
Indices: 2776791--2776868 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
2776781 AAATGAAGTT
* **
2776791 ACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATG
1 ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
2776830 ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
1 ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
2776869 GAAGGGAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.55, C:0.24, G:0.13, T:0.08
Consensus pattern (39 bp):
ACCCGAATTAACCAGAAACAAACAAACAAACAGAAAATG
Found at i:2777040 original size:398 final size:398
Alignment explanation
Indices: 2776304--2777099 Score: 1592
Period size: 398 Copynumber: 2.0 Consensus size: 398
2776294 AGAGATCAAT
2776304 GTAATTACTAATTAGTAAACATTAAGCAAAATACAAACATAAACAAACAGAAAATGGAAGAAGAA
1 GTAATTACTAATTAGTAAACATTAAGCAAAATACAAACATAAACAAACAGAAAATGGAAGAAGAA
2776369 GAAGAAGAAGAAGAAAATGAAGTTACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATGAC
66 GAAGAAGAAGAAGAAAATGAAGTTACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATGAC
2776434 CCGAATTAACCAGAAACAAACAAACAAACAGAAAATGGAAGGGAATCATCGAGGGATCCATTGTT
131 CCGAATTAACCAGAAACAAACAAACAAACAGAAAATGGAAGGGAATCATCGAGGGATCCATTGTT
2776499 AATGATTTCTTAAAAGATTCAGATGCAAAAATTAAGCAAAATACAACGATTGTGAATGATTTATT
196 AATGATTTCTTAAAAGATTCAGATGCAAAAATTAAGCAAAATACAACGATTGTGAATGATTTATT
2776564 TTGACAAAATTATTTTCAAAATAGAGCTCCATTTACCTTAAATTGGGTGGAGGATCGGAGGTGGA
261 TTGACAAAATTATTTTCAAAATAGAGCTCCATTTACCTTAAATTGGGTGGAGGATCGGAGGTGGA
2776629 TCGGTATTTTGGAATTGGGAAAAAAAGGGAGAAGGGCACGATAGGTTAGGGATTTTGGAAGATTG
326 TCGGTATTTTGGAATTGGGAAAAAAAGGGAGAAGGGCACGATAGGTTAGGGATTTTGGAAGATTG
2776694 GTAGAAGA
391 GTAGAAGA
2776702 GTAATTACTAATTAGTAAACATTAAGCAAAATACAAACATAAACAAACAGAAAATGGAAGAAGAA
1 GTAATTACTAATTAGTAAACATTAAGCAAAATACAAACATAAACAAACAGAAAATGGAAGAAGAA
2776767 GAAGAAGAAGAAGAAAATGAAGTTACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATGAC
66 GAAGAAGAAGAAGAAAATGAAGTTACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATGAC
2776832 CCGAATTAACCAGAAACAAACAAACAAACAGAAAATGGAAGGGAATCATCGAGGGATCCATTGTT
131 CCGAATTAACCAGAAACAAACAAACAAACAGAAAATGGAAGGGAATCATCGAGGGATCCATTGTT
2776897 AATGATTTCTTAAAAGATTCAGATGCAAAAATTAAGCAAAATACAACGATTGTGAATGATTTATT
196 AATGATTTCTTAAAAGATTCAGATGCAAAAATTAAGCAAAATACAACGATTGTGAATGATTTATT
2776962 TTGACAAAATTATTTTCAAAATAGAGCTCCATTTACCTTAAATTGGGTGGAGGATCGGAGGTGGA
261 TTGACAAAATTATTTTCAAAATAGAGCTCCATTTACCTTAAATTGGGTGGAGGATCGGAGGTGGA
2777027 TCGGTATTTTGGAATTGGGAAAAAAAGGGAGAAGGGCACGATAGGTTAGGGATTTTGGAAGATTG
326 TCGGTATTTTGGAATTGGGAAAAAAAGGGAGAAGGGCACGATAGGTTAGGGATTTTGGAAGATTG
2777092 GTAGAAGA
391 GTAGAAGA
2777100 CGGGAGTGAA
Statistics
Matches: 398, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
398 398 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.22
Consensus pattern (398 bp):
GTAATTACTAATTAGTAAACATTAAGCAAAATACAAACATAAACAAACAGAAAATGGAAGAAGAA
GAAGAAGAAGAAGAAAATGAAGTTACCCGGATTAACCAGAAACAAACAGCCAAACAGAAAATGAC
CCGAATTAACCAGAAACAAACAAACAAACAGAAAATGGAAGGGAATCATCGAGGGATCCATTGTT
AATGATTTCTTAAAAGATTCAGATGCAAAAATTAAGCAAAATACAACGATTGTGAATGATTTATT
TTGACAAAATTATTTTCAAAATAGAGCTCCATTTACCTTAAATTGGGTGGAGGATCGGAGGTGGA
TCGGTATTTTGGAATTGGGAAAAAAAGGGAGAAGGGCACGATAGGTTAGGGATTTTGGAAGATTG
GTAGAAGA
Found at i:2778137 original size:21 final size:22
Alignment explanation
Indices: 2778103--2778146 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
2778093 AATTTATCCA
** *
2778103 ACCCAATATTTATT-TTCTATC
1 ACCCAATAAATATTATTCAATC
2778124 ACCCAATAAATATTATTCAATC
1 ACCCAATAAATATTATTCAATC
2778146 A
1 A
2778147 ATTAATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ACCCAATAAATATTATTCAATC
Found at i:2783847 original size:35 final size:36
Alignment explanation
Indices: 2783795--2783870 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 36
2783785 GCCATTAGTT
* *
2783795 TGTTTCAGTTGGATTAGCTATTATGAGCA-TTGGTG
1 TGTTTCAGATGGATTAGCTATTATGAGCATTTGATG
* *
2783830 TGTTTCAGATGGTTTAGCTCTTATGAGCATTTGATG
1 TGTTTCAGATGGATTAGCTATTATGAGCATTTGATG
2783866 TGTTT
1 TGTTT
2783871 TGGTTGGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 26 0.72
36 10 0.28
ACGTcount: A:0.18, C:0.09, G:0.26, T:0.46
Consensus pattern (36 bp):
TGTTTCAGATGGATTAGCTATTATGAGCATTTGATG
Found at i:2790786 original size:35 final size:35
Alignment explanation
Indices: 2790704--2790831 Score: 123
Period size: 36 Copynumber: 3.6 Consensus size: 35
2790694 CTCTCTATTT
* * *
2790704 TGGTGTGTTTCGATTGGACTT-GCTTTTCGGAGTCAT
1 TGGTGTGTTTCGGTTGGA-TTAGCTTTTCTGAG-CAC
* * * *
2790740 TGGTTTGTTTCGGTTGTATTAGCTCTTCTGAGCAG
1 TGGTGTGTTTCGGTTGGATTAGCTTTTCTGAGCAC
* * *
2790775 TGGTGTGTTTCGGATGGTTTAGCTTTTATGAGCAAC
1 TGGTGTGTTTCGGTTGGATTAGCTTTTCTGAGC-AC
*
2790811 TGGTGTGTTTTGGTTGGATTA
1 TGGTGTGTTTCGGTTGGATTA
2790832 TTAATGTACT
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
35 31 0.42
36 43 0.58
ACGTcount: A:0.12, C:0.11, G:0.31, T:0.45
Consensus pattern (35 bp):
TGGTGTGTTTCGGTTGGATTAGCTTTTCTGAGCAC
Found at i:2795992 original size:3 final size:3
Alignment explanation
Indices: 2795986--2796031 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
2795976 AACTTTACCT
*
2795986 TTA TTA TTA TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
2796032 ATTTTTAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:2796224 original size:71 final size:72
Alignment explanation
Indices: 2796112--2796252 Score: 221
Period size: 71 Copynumber: 2.0 Consensus size: 72
2796102 AAATTAAACC
2796112 GTCCACCATCTTAAAAATTGGGTAATTTACCCATTAAGGCCATCCAATTATAATTCTGTAATCAA
1 GTCCACCATCTTAAAAATTGGGTAATTTACCCATTAAGGCCATCCAATTATAATTCTGTAATCAA
2796177 TTAACGA
66 TTAACGA
* * * * * *
2796184 GTCCACCATCTTCAGAA-TGGGTAATTTACCCATTAGGGCCATCCAATTGTGATTCTTTAATCAA
1 GTCCACCATCTTAAAAATTGGGTAATTTACCCATTAAGGCCATCCAATTATAATTCTGTAATCAA
2796248 TTAAC
66 TTAAC
2796253 ACCTTTAAAC
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 48 0.76
72 15 0.24
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (72 bp):
GTCCACCATCTTAAAAATTGGGTAATTTACCCATTAAGGCCATCCAATTATAATTCTGTAATCAA
TTAACGA
Found at i:2801227 original size:27 final size:28
Alignment explanation
Indices: 2801197--2801256 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
2801187 TAAGGTGATC
2801197 CTTTCATAAGT-CGCCACAAAGG-ATTTT
1 CTTTCAT-AGTGCGCCACAAAGGCATTTT
* * *
2801224 CTTTTATATTGCGCCACTAAGGCATTTT
1 CTTTCATAGTGCGCCACAAAGGCATTTT
2801252 CTTTC
1 CTTTC
2801257 CTGACATGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.07
27 16 0.59
28 9 0.33
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (28 bp):
CTTTCATAGTGCGCCACAAAGGCATTTT
Found at i:2802694 original size:22 final size:22
Alignment explanation
Indices: 2802668--2802709 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
2802658 TGTCCCCTTA
*
2802668 AAGAA-AGTGATATCGCAATACC
1 AAGAAGAG-GATATCACAATACC
2802690 AAGAAGAGGATATCACAATA
1 AAGAAGAGGATATCACAATA
2802710 TCTCAGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (22 bp):
AAGAAGAGGATATCACAATACC
Found at i:2808450 original size:26 final size:26
Alignment explanation
Indices: 2808417--2808488 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
2808407 TCATAAGTCA
2808417 CCACAAAGGCTTTTCTTTATATTGCG
1 CCACAAAGGCTTTTCTTTATATTGCG
* * *
2808443 CCACAAAGTCGTTCCTTTCATATTGCG
1 CCACAAAGGCTTTTCTTT-ATATTGCG
* * *
2808470 CCAAAAAAGATTTTCTTTA
1 CCACAAAGGCTTTTCTTTA
2808489 GGGTTCGCTG
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 16 0.44
27 20 0.56
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (26 bp):
CCACAAAGGCTTTTCTTTATATTGCG
Found at i:2809277 original size:28 final size:28
Alignment explanation
Indices: 2809238--2809298 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
2809228 TATACAGTAT
* *
2809238 CAGT-ACAGTGTGGGCCTTGGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
2809265 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
2809293 CAGTAA
1 CAGTAA
2809299 TCAATACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:2809653 original size:27 final size:27
Alignment explanation
Indices: 2809631--2809936 Score: 382
Period size: 27 Copynumber: 11.3 Consensus size: 27
2809621 AGGGGTATAA
2809631 CAGTCATTTTACCCATCGAGGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
* *
2809658 CAATCATTTTACCCATTGAGGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
* *
2809685 CAATCATTTTACCCATCAAGGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
*
2809712 CAGTCATTTTACCCATCGAAGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
2809739 C-GATCATTTTACCCATCGAGGGTATTT
1 CAG-TCATTTTACCCATCGAGGGTATTT
** * *
2809766 TGGTTATTTTACCCATCAAGGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
** * *
2809793 TGGTCATTTTATCCATCGAAGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
* *
2809820 CAGTCATTTTACCCATCAAGGTTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
* *
2809847 CAGTAATTTTACCCATAGAGGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
* * *
2809874 C-GATAATTTTACCGATCTAGGGTATTT
1 CAG-TCATTTTACCCATCGAGGGTATTT
*
2809901 CAGTCATTTTACCCATTGAGGGTATTT
1 CAGTCATTTTACCCATCGAGGGTATTT
*
2809928 CGGTCATTT
1 CAGTCATTT
2809937 GCCCCCAAAT
Statistics
Matches: 242, Mismatches: 33, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 238 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (27 bp):
CAGTCATTTTACCCATCGAGGGTATTT
Found at i:2813932 original size:41 final size:40
Alignment explanation
Indices: 2813837--2814033 Score: 232
Period size: 41 Copynumber: 4.8 Consensus size: 40
2813827 ACCTTTCGGG
* ** *
2813837 TCTTTGGCGGCGTTTTCAAAAAAGCGCCGCTAATGCTGGT
1 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGT
* *
2813877 TCTTTAGCGGCGTTTTTGAACAAGCGCCGCTAATGTTTCGT
1 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG-CTCGT
* * *
2813918 TCTTTAGCGGCGTTTTTTGAGAAAGCGCCGCTAATGCTAGGG
1 TCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCT-CGT
* *
2813960 GCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGT
1 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-GT
* **
2814001 GCTTTAGCGGTATTTTTGAAAAAGCGCCGCTAA
1 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
2814034 AAATATTTTA
Statistics
Matches: 134, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
40 31 0.23
41 70 0.52
42 33 0.25
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (40 bp):
TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGT
Found at i:2813990 original size:83 final size:81
Alignment explanation
Indices: 2813855--2814033 Score: 245
Period size: 83 Copynumber: 2.2 Consensus size: 81
2813845 GGCGTTTTCA
** * * * *
2813855 AAAAAGCGCCGCTAATGCTGGTTCTTTAGCGGCGTTTTTGAACAAGCGCCGCTAATGTTTC-GTT
1 AAAAAGCGCCGCTAATGCTGGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATG-CTCGGTG
2813919 CTTTAGCGGCGT-TTTTTG
65 CTTTAGC-G-GTATTTTTG
*
2813937 AGAAAGCGCCGCTAATGCTAGGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGTG
1 AAAAAGCGCCGCTAATGCT-GGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGTG
2814002 CTTTAGCGGTATTTTTG
65 CTTTAGCGGTATTTTTG
2814019 AAAAAGCGCCGCTAA
1 AAAAAGCGCCGCTAA
2814034 AAATATTTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
81 2 0.02
82 41 0.48
83 43 0.50
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (81 bp):
AAAAAGCGCCGCTAATGCTGGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGTGC
TTTAGCGGTATTTTTG
Found at i:2814289 original size:15 final size:14
Alignment explanation
Indices: 2814269--2814332 Score: 65
Period size: 15 Copynumber: 4.4 Consensus size: 14
2814259 ACTATTTCAA
2814269 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
2814283 GGGTTTAAGGATTAT
1 -GGTTTATGGATTAT
* *
2814298 GGGTTTAGGGTTTAT
1 -GGTTTATGGATTAT
* *
2814313 GATTTATGGTTTAT
1 GGTTTATGGATTAT
2814327 GGTTTA
1 GGTTTA
2814333 CGGTTTAAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 17 0.40
15 26 0.60
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:2814292 original size:22 final size:22
Alignment explanation
Indices: 2814267--2814382 Score: 87
Period size: 22 Copynumber: 5.4 Consensus size: 22
2814257 ATACTATTTC
*
2814267 AAGGTTTATGGATTATGGGTTT
1 AAGGTTTATGGGTTATGGGTTT
*
2814289 AAGGATTATGGGTT-TAGGGTTT
1 AAGGTTTATGGGTTAT-GGGTTT
* * *
2814311 ATGATTTATGGTTTAT-GGTTT
1 AAGGTTTATGGGTTATGGGTTT
* * * *
2814332 ACGGTTTAAGGGTT-GGGGTTC
1 AAGGTTTATGGGTTATGGGTTT
*
2814353 AAGGTTTA-GAGGTTAGGGGTTT
1 AAGGTTTATG-GGTTATGGGTTT
*
2814375 AGGGTTTA
1 AAGGTTTA
2814383 GATTAATTAG
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.01
21 31 0.42
22 41 0.55
23 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.35, T:0.42
Consensus pattern (22 bp):
AAGGTTTATGGGTTATGGGTTT
Found at i:2814310 original size:7 final size:7
Alignment explanation
Indices: 2814269--2814383 Score: 63
Period size: 7 Copynumber: 16.0 Consensus size: 7
2814259 ACTATTTCAA
*
2814269 GGTTTAT
1 GGTTTAG
*
2814276 GGATTATG
1 GGTTTA-G
*
2814284 GGTTTAA
1 GGTTTAG
*
2814291 GGATTATG
1 GGTTTA-G
2814299 GGTTTAG
1 GGTTTAG
*
2814306 GGTTTAT
1 GGTTTAG
* *
2814313 GATTTAT
1 GGTTTAG
*
2814320 GGTTTAT
1 GGTTTAG
*
2814327 GGTTTAC
1 GGTTTAG
2814334 GGTTTAAG
1 GGTTT-AG
*
2814342 GG-TTGG
1 GGTTTAG
* *
2814348 GGTTCAA
1 GGTTTAG
2814355 GGTTTAG
1 GGTTTAG
2814362 AGG-TTAGG
1 -GGTTTA-G
2814370 GGTTTAG
1 GGTTTAG
2814377 GGTTTAG
1 GGTTTAG
2814384 ATTAATTAGT
Statistics
Matches: 83, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
6 3 0.04
7 61 0.73
8 19 0.23
ACGTcount: A:0.19, C:0.02, G:0.37, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:2814383 original size:15 final size:14
Alignment explanation
Indices: 2814269--2814383 Score: 63
Period size: 15 Copynumber: 8.0 Consensus size: 14
2814259 ACTATTTCAA
* *
2814269 GGTTTATGGATTATG
1 GGTTTAGGGTTTA-G
* *
2814284 GGTTTAAGGATTATG
1 GGTTTAGGGTTTA-G
*
2814299 GGTTTAGGGTTTAT
1 GGTTTAGGGTTTAG
* * *
2814313 GATTTATGGTTTAT
1 GGTTTAGGGTTTAG
*
2814327 GGTTTACGGTTTAAG
1 GGTTTAGGGTTT-AG
* * *
2814342 GG-TTGGGGTTCAA
1 GGTTTAGGGTTTAG
2814355 GGTTTAGAGG-TTAGG
1 GGTTTAG-GGTTTA-G
2814370 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAG
2814384 ATTAATTAGT
Statistics
Matches: 79, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
13 3 0.04
14 36 0.46
15 40 0.51
ACGTcount: A:0.19, C:0.02, G:0.37, T:0.43
Consensus pattern (14 bp):
GGTTTAGGGTTTAG
Found at i:2814447 original size:22 final size:22
Alignment explanation
Indices: 2814406--2814488 Score: 82
Period size: 22 Copynumber: 3.8 Consensus size: 22
2814396 TTTTAATTTT
* *
2814406 GGTTGGGATTTAA-GGTTTAAG
1 GGTTAGGAGTTAAGGGTTTAAG
2814427 GGTTAGGAGTTAAGGGTTTAAG
1 GGTTAGGAGTTAAGGGTTTAAG
*
2814449 GGTTAAGAGTT-AGGGATTT-AG
1 GGTTAGGAGTTAAGGG-TTTAAG
*
2814470 GGTTTAGGGATTTAAGGGT
1 GG-TTA-GGAGTTAAGGGT
2814489 CAAATTAGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
21 19 0.37
22 24 0.46
23 5 0.10
24 4 0.08
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (22 bp):
GGTTAGGAGTTAAGGGTTTAAG
Found at i:2814447 original size:29 final size:29
Alignment explanation
Indices: 2814414--2814488 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
2814404 TTGGTTGGGA
2814414 TTTAAGGTTTAAGGGTTA-GGAGTTAAGGG
1 TTTAAGGTTTAAGGGTTAGGGA-TTAAGGG
* * *
2814443 TTTAAGGGTTAAGAGTTAGGGATTTAGGG
1 TTTAAGGTTTAAGGGTTAGGGATTAAGGG
*
2814472 TTTAGGGATTTAAGGGT
1 TTTAAGG-TTTAAGGGT
2814489 CAAATTAGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 28 0.74
30 10 0.26
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.36
Consensus pattern (29 bp):
TTTAAGGTTTAAGGGTTAGGGATTAAGGG
Found at i:2814478 original size:15 final size:16
Alignment explanation
Indices: 2814421--2814488 Score: 67
Period size: 15 Copynumber: 4.6 Consensus size: 16
2814411 GGATTTAAGG
2814421 TTTAAGGG-TTA-GGA
1 TTTAAGGGTTTAGGGA
*
2814435 GTTAAGGGTTTAAGGG-
1 TTTAAGGGTTT-AGGGA
*
2814451 -TTAAGAG-TTAGGGA
1 TTTAAGGGTTTAGGGA
2814465 TTT-AGGGTTTAGGGA
1 TTTAAGGGTTTAGGGA
2814480 TTTAAGGGT
1 TTTAAGGGT
2814489 CAAATTAGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 4 0.09
14 12 0.27
15 20 0.45
16 6 0.14
17 2 0.05
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (16 bp):
TTTAAGGGTTTAGGGA
Found at i:2815232 original size:33 final size:33
Alignment explanation
Indices: 2815194--2815261 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
2815184 AAATTTGGAA
2815194 CCCTAGATTTTTCTCCGCAGAACTTTTGTTAAT
1 CCCTAGATTTTTCTCCGCAGAACTTTTGTTAAT
*
2815227 CCCTAGATTTTTCTCTGCAGAACTTTTGTTAAT
1 CCCTAGATTTTTCTCCGCAGAACTTTTGTTAAT
2815260 CC
1 CC
2815262 ACAAGGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.43
Consensus pattern (33 bp):
CCCTAGATTTTTCTCCGCAGAACTTTTGTTAAT
Found at i:2819425 original size:43 final size:42
Alignment explanation
Indices: 2819371--2819470 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 42
2819361 TTTCCATAAA
*
2819371 CGCCGCCAAAGA-ACGGTACTTTTAGCGGCGTTTGTGATAAAAG
1 CGCCGCTAAAGATA-GGTAC-TTTAGCGGCGTTTGTGATAAAAG
* * *
2819414 CGCCGCTAAAGATTATGTTCTTTAGCGGCGTTTGTGTTAAAAG
1 CGCCGCTAAAGA-TAGGTACTTTAGCGGCGTTTGTGATAAAAG
2819457 CGCCGCTAAAGATA
1 CGCCGCTAAAGATA
2819471 ATAAAAGCGT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 2 0.04
43 45 0.88
44 3 0.06
45 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
CGCCGCTAAAGATAGGTACTTTAGCGGCGTTTGTGATAAAAG
Found at i:2819510 original size:64 final size:63
Alignment explanation
Indices: 2819407--2819530 Score: 158
Period size: 64 Copynumber: 2.0 Consensus size: 63
2819397 GGCGTTTGTG
** ** * *
2819407 ATAAAAGCGCCGCTAAAGATTATGTTCTTTAGCGGCGTTTGTGTTAAAAGCGCCGCTAAAGATA
1 ATAAAAGCGCCGCTAAAGAACATGACCTTTAGCGACGTTTGTG-AAAAAGCGCCGCTAAAGATA
* * *
2819471 ATAAAAGCGTCGCTAAAGAACATGACCTTTAGCGACGTTTGTGAAAAAGTGCTGCTAAAG
1 ATAAAAGCGCCGCTAAAGAACATGACCTTTAGCGACGTTTGTGAAAAAGCGCCGCTAAAG
2819531 GTCATGTTCT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
63 14 0.27
64 37 0.73
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (63 bp):
ATAAAAGCGCCGCTAAAGAACATGACCTTTAGCGACGTTTGTGAAAAAGCGCCGCTAAAGATA
Found at i:2819579 original size:43 final size:43
Alignment explanation
Indices: 2819471--2819588 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 43
2819461 GCTAAAGATA
* * ** *
2819471 ATAAAAGCGTCGCTAAAGAACATGACCTTTAGCGACGTTTGTG
1 ATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGACATTTGTG
* * * *
2819514 A-AAAAGTGCTGCTAAAGGTCATGTTCTTTAGCGGCATTTGTG
1 ATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGACATTTGTG
*
2819556 ATAAAAGCACCGCTAAAGATCATGTTCTTTAGC
1 ATAAAAGCGCCGCTAAAGATCATGTTCTTTAGC
2819589 AGTGTTTCTG
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 33 0.54
43 28 0.46
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
ATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGACATTTGTG
Found at i:2835934 original size:13 final size:13
Alignment explanation
Indices: 2835916--2835941 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2835906 TATTATTAAT
2835916 ATTATTTTGTGTG
1 ATTATTTTGTGTG
2835929 ATTATTTTGTGTG
1 ATTATTTTGTGTG
2835942 CATTTGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (13 bp):
ATTATTTTGTGTG
Found at i:2837491 original size:41 final size:42
Alignment explanation
Indices: 2837429--2837514 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 42
2837419 ATAAGGTGGT
* *
2837429 TGAATGTAATACAGACTTTACGTCTAGCAGGCTTGATGCTGG
1 TGAATGTAATACAGACTTTACGTCTAGCAGGCTTCATGCCGG
*
2837471 TGAA-GTAATTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
1 TGAATGTAATACAGACTTTACGTCTAGCAGGCTTCATGCCGG
2837512 TGA
1 TGA
2837515 TACATTTCGG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 37 0.90
42 4 0.10
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAATGTAATACAGACTTTACGTCTAGCAGGCTTCATGCCGG
Found at i:2837528 original size:41 final size:41
Alignment explanation
Indices: 2837429--2837597 Score: 137
Period size: 41 Copynumber: 4.1 Consensus size: 41
2837419 ATAAGGTGGT
* * *
2837429 TGAATGTAATACAGACTTTACGTCTAGCAGGCTTGATGCTGG
1 TGAA-GTAATTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
2837471 TGAAGTAATTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
1 TGAAGTAATTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
* * * ** *
2837512 TG-A-TACATTTCGGACTTTAAGCCTAGCAGGCTAAATACCGG
1 TGAAGTA-A-TTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
* * * * * **
2837553 TGTACTGAA-TCAGGCTTTAAGCCTAGCAGGCTAAATGCCGG
1 TGAAGT-AATTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
2837594 TGAA
1 TGAA
2837598 TCTGTTTTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 97 0.89
42 5 0.05
43 2 0.02
44 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
TGAAGTAATTCAGACTTTACGTCTAGCAGGCTTCATGCCGG
Found at i:2840264 original size:10 final size:10
Alignment explanation
Indices: 2840249--2840296 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
2840239 TAACATGTTG
2840249 AATTTTAATT
1 AATTTTAATT
*
2840259 AATTTTATAATA
1 AA-TTT-TAATT
2840271 AATTTTAATT
1 AATTTTAATT
*
2840281 AATTTTTATT
1 AATTTTAATT
*
2840291 TATTTT
1 AATTTT
2840297 CAATAGATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 20 0.62
11 6 0.19
12 6 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AATTTTAATT
Found at i:2842906 original size:621 final size:622
Alignment explanation
Indices: 2841722--2842943 Score: 1707
Period size: 621 Copynumber: 2.0 Consensus size: 622
2841712 TGCATTGGAA
* *
2841722 CTTTTATTTTATTTTTATTTATTGTACTTAGTTAAAATCCTAGTTTTTAATCACCTCCTCCAATC
1 CTTTTATTTTATTTTTATTTATTGTACTTAATTAAAATCCTAGTTTTTAATCACCTCCTCAAATC
* *
2841787 AAAATATTTTTCTTCACTAAAGTGTTTTAAATTTCATTCATAAATAATTCTTTTCACAGTCCCTG
66 AAAATATTTTTCTTCACCAAAGTATTTTAAATTTCATTCATAAATAATTCTTTTCACAGTCCCTG
* * * *
2841852 TGGGTATGATAACTCGACATTTACTTGTCACTTTATTACTTGTTGCGATTGTGTACACTTACACA
131 TGGGTACGACAACTCGACACTTACTTGTCACTTTATTACTTGTTGCAATTGTGTACACTTACACA
* * * * * *
2841917 TTTCTGTCGTTCCAAGTTTTTGGTGCTGTTGCCAGTGACTGTTTTAAAAATTATTATCTGTTAAT
196 TTTCTATCATTCCAAGTTTTTGGCGCTGTTGCCAGTGACTATTTTAAAAATCATTATCTGTGAAT
* *
2841982 TTGTTAATTTTGCATTTTAGTTTATTTTTCTATTCAATTTTAACTTAATTAAATTTTCTATGTTT
261 TTATTAATTTTGCATTTTAGTTTATTTTTCTATTCAATTTTAACTTAATTAAATTTTCTATATTT
* *
2842047 GTTTCAGGTGTTTATGAGTATTGGTCGAATCATTGATTTACTCCTCGTGAACCCTGAGATTGAAA
326 GTTTCAGGTGTTTATGAGTATTGATCAAATCATTGATTTACTCCTCGTGAACCCTGAGATTGAAA
* * * *
2842112 GAACTTTTCGACAATAGAGAAGACAAGCAAGTTAGAGAAGGACCAAAGAGATGAACTTTGAAAAT
391 GAAATTTTCAACAAGAGAGAAGACAAGCAAGTCAGAGAAGGACCAAAGAGATGAACTTTGAAAAT
*
2842177 CCGAATCAAGAAAACGGAGCAAACCCTACTCAAAATCCTATCCTTATTACTGATGATAGGGATAG
456 CCGAATCAAGAAAACAGAGCAAACCCTACTCAAAATCCTATCCTTATTACTGATGATAGGGATAG
* * * * *
2842242 AGCTCTAAGACAGTATGTTGTGCTAGTGTTTCATGATCTTAATCCT-GGTATTAGGAGAC-CTAA
521 AGCTCTAAGACAATATGATGTGCTAATGTCTCATGATCTTAAT-CTGGGTATTAGGAGACTCGAA
2842305 AGTCGAGGCACAACAATTCAAGCTAAAGCCAGTCATGTT
585 A-TCGAGGCACAACAATTCAAGCTAAAGCCAGTCATGTT
* ** *
2842344 CTTTTATTTT-TATTTTATTTTATTTTACTTAATT-AAATTTTAGTTTTTAATCACTTCCTCAAA
1 CTTTTATTTTAT-TTTTA-TTTATTGTACTTAATTAAAATCCTAGTTTTTAATCACCTCCTC-AA
2842407 ATCAAAATATTTTTC-TCACCAAAGTATTTT-AATTGT-ATTCATAAATAAATTCTTTTCACAGT
63 ATCAAAATATTTTTCTTCACCAAAGTATTTTAAATT-TCATTCATAAAT-AATTCTTTTCACAGT
* * *
2842469 CTCTGTGGGTACGACAACTCGCCACTTACTTGTCACTTTATTACTTGTTGCAATTGTGTAGACTT
126 CCCTGTGGGTACGACAACTCGACACTTACTTGTCACTTTATTACTTGTTGCAATTGTGTACACTT
* * *
2842534 GCACATTT-TCATCATTCCAAGTTTTTGGCGCTGTTGCCGAG-GACTATTTTAAAAGTCATTATT
191 ACACATTTCT-ATCATTCCAAGTTTTTGGCGCTGTTGCC-AGTGACTATTTTAAAAATCATTATC
* *
2842597 TGTGAATTTATTAATTTTGCATTTTGGTTTATTTTTCTGTTCAATTTTAACTTAATT-AATTTTC
254 TGTGAATTTATTAATTTTGCATTTTAGTTTATTTTTCTATTCAATTTTAACTTAATTAAATTTTC
* * * * *
2842661 TGTATTTGTTTCAGGTGTTTATGAGTTTTGATCAAATTATTGATTTACTCCTTGT-AGACCGTGA
319 TATATTTGTTTCAGGTGTTTATGAGTATTGATCAAATCATTGATTTACTCCTCGTGA-ACCCTGA
* * *
2842725 GATTGAACGAAATTTTCAACAACGA-ATAAGACAAGCAAGTCAGAGAAGGACCGAAGAGATGAAC
383 GATTGAAAGAAATTTTCAACAA-GAGAGAAGACAAGCAAGTCAGAGAAGGACCAAAGAGATGAAC
** * * **
2842789 TTTGAAAATTTGAATCAAGGAAACAGAGCACACCCTACTCAAAATCCTATCCTTATTGTTGATGA
447 TTTGAAAATCCGAATCAAGAAAACAGAGCAAACCCTACTCAAAATCCTATCCTTATTACTGATGA
* * *
2842854 TAGGGATAGAGCTCTCAGACAATATGCCATGT-C-AATGTCTCGTGATCTTAATCTGGGTGTTAG
512 TAGGGATAGAGCTCTAAGACAATATG--ATGTGCTAATGTCTCATGATCTTAATCTGGGTATTAG
*
2842917 GAGACTCGAAATTGAGGCACAACAATT
575 GAGACTCGAAATCGAGGCACAACAATT
2842944 TGAGCTGAAG
Statistics
Matches: 529, Mismatches: 58, Indels: 27
0.86 0.09 0.04
Matches are distributed among these distances:
620 3 0.01
621 257 0.49
622 234 0.44
623 35 0.07
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (622 bp):
CTTTTATTTTATTTTTATTTATTGTACTTAATTAAAATCCTAGTTTTTAATCACCTCCTCAAATC
AAAATATTTTTCTTCACCAAAGTATTTTAAATTTCATTCATAAATAATTCTTTTCACAGTCCCTG
TGGGTACGACAACTCGACACTTACTTGTCACTTTATTACTTGTTGCAATTGTGTACACTTACACA
TTTCTATCATTCCAAGTTTTTGGCGCTGTTGCCAGTGACTATTTTAAAAATCATTATCTGTGAAT
TTATTAATTTTGCATTTTAGTTTATTTTTCTATTCAATTTTAACTTAATTAAATTTTCTATATTT
GTTTCAGGTGTTTATGAGTATTGATCAAATCATTGATTTACTCCTCGTGAACCCTGAGATTGAAA
GAAATTTTCAACAAGAGAGAAGACAAGCAAGTCAGAGAAGGACCAAAGAGATGAACTTTGAAAAT
CCGAATCAAGAAAACAGAGCAAACCCTACTCAAAATCCTATCCTTATTACTGATGATAGGGATAG
AGCTCTAAGACAATATGATGTGCTAATGTCTCATGATCTTAATCTGGGTATTAGGAGACTCGAAA
TCGAGGCACAACAATTCAAGCTAAAGCCAGTCATGTT
Found at i:2847279 original size:22 final size:22
Alignment explanation
Indices: 2847254--2847303 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
2847244 TATAGATTTT
2847254 TTCATGCCATTTTTAACTCAAA
1 TTCATGCCATTTTTAACTCAAA
*
2847276 TTCATGCCCTTTTTAACTCAAA
1 TTCATGCCATTTTTAACTCAAA
2847298 TTCATG
1 TTCATG
2847304 AAATTTCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.42
Consensus pattern (22 bp):
TTCATGCCATTTTTAACTCAAA
Found at i:2870151 original size:15 final size:14
Alignment explanation
Indices: 2870124--2870164 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
2870114 TTTGCTTTTA
*
2870124 TTCTTTTTTCTTCT
1 TTCTTTTTTCTTCG
2870138 TTCTTTTCTTCTTCG
1 TTCTTTT-TTCTTCG
*
2870153 TTCTTTTGTCTT
1 TTCTTTTTTCTT
2870165 TTGTTTCTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.00, C:0.22, G:0.05, T:0.73
Consensus pattern (14 bp):
TTCTTTTTTCTTCG
Found at i:2870156 original size:22 final size:22
Alignment explanation
Indices: 2870113--2870166 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
2870103 AATTTTGGCA
**
2870113 CTTTGCTTTTATTCTTTTTTCTT
1 CTTT-CTTTTATTCTTCGTTCTT
*
2870136 CTTTCTTTTCTTCTTCGTTCTT
1 CTTTCTTTTATTCTTCGTTCTT
2870158 -TTGTCTTTT
1 CTT-TCTTTT
2870167 GTTTCTTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 21 0.78
23 4 0.15
ACGTcount: A:0.02, C:0.20, G:0.06, T:0.72
Consensus pattern (22 bp):
CTTTCTTTTATTCTTCGTTCTT
Found at i:2872058 original size:24 final size:23
Alignment explanation
Indices: 2872012--2872061 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
2872002 TGATTTATCA
*
2872012 CATTTTTACTGGCAGCTTGTCTG
1 CATTTTTACTGGCAGATTGTCTG
* *
2872035 CATTTTTATTGGCAGAATTTTCTG
1 CATTTTTACTGGCAG-ATTGTCTG
2872059 CAT
1 CAT
2872062 ACTGTTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (23 bp):
CATTTTTACTGGCAGATTGTCTG
Found at i:2873881 original size:18 final size:18
Alignment explanation
Indices: 2873858--2873894 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2873848 TAAATATTTC
2873858 AAAATTATATCAAGAATG
1 AAAATTATATCAAGAATG
2873876 AAAATTATATCAAGAATG
1 AAAATTATATCAAGAATG
2873894 A
1 A
2873895 GTTATTGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.11, T:0.27
Consensus pattern (18 bp):
AAAATTATATCAAGAATG
Found at i:2874204 original size:12 final size:12
Alignment explanation
Indices: 2874183--2874220 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
2874173 TTACCATCTC
*
2874183 TTTC-TTTTCTT
1 TTTCTTTTTCTA
2874194 TTTCTTTTTCTA
1 TTTCTTTTTCTA
*
2874206 TTTCTTTTTTTA
1 TTTCTTTTTCTA
2874218 TTT
1 TTT
2874221 TTGCCACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTCTTTTTCTA
Found at i:2880182 original size:52 final size:52
Alignment explanation
Indices: 2880104--2880209 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
2880094 CACGTAGATC
2880104 AAATTATAAACACGTGTGTACTTACTATATGAATAAGTTGATCTAACATATT
1 AAATTATAAACACGTGTGTACTTACTATATGAATAAGTTGATCTAACATATT
2880156 AAATTATAAACACGTGTGTACTTACTATATGAATAAGTTGATCTAACATATT
1 AAATTATAAACACGTGTGTACTTACTATATGAATAAGTTGATCTAACATATT
2880208 AA
1 AA
2880210 GAAAACAACC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (52 bp):
AAATTATAAACACGTGTGTACTTACTATATGAATAAGTTGATCTAACATATT
Found at i:2882796 original size:29 final size:28
Alignment explanation
Indices: 2882764--2882828 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 28
2882754 AATTTTAACA
2882764 TAAATTTTAAAATTTTAAAAATA-AAAAAT
1 TAAATTTTAAAA--TTAAAAATATAAAAAT
2882793 TAAATTCTTAAAATTAAAAATATAAAAAT
1 TAAATT-TTAAAATTAAAAATATAAAAAT
2882822 TAAATTT
1 TAAATTT
2882829 CCAATCTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
28 10 0.29
29 18 0.53
30 6 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
TAAATTTTAAAATTAAAAATATAAAAAT
Found at i:2882813 original size:21 final size:22
Alignment explanation
Indices: 2882773--2882818 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
2882763 ATAAATTTTA
2882773 AAATTTTAAAAATAAAAAAT-T
1 AAATTTTAAAAATAAAAAATAT
*
2882794 AAATTCTT-AAAATTAAAAATAT
1 AAATT-TTAAAAATAAAAAATAT
2882816 AAA
1 AAA
2882819 AATTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATTTTAAAAATAAAAAATAT
Found at i:2883826 original size:29 final size:28
Alignment explanation
Indices: 2883794--2883858 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 28
2883784 AATTTTAACA
2883794 TAAATTTTAAAATTTTAAAAATA-AAAAAT
1 TAAATTTTAAAA--TTAAAAATATAAAAAT
2883823 TAAATTCTTAAAATTAAAAATATAAAAAT
1 TAAATT-TTAAAATTAAAAATATAAAAAT
2883852 TAAATTT
1 TAAATTT
2883859 CCAATCTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
28 10 0.29
29 18 0.53
30 6 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
TAAATTTTAAAATTAAAAATATAAAAAT
Found at i:2883843 original size:21 final size:22
Alignment explanation
Indices: 2883803--2883848 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
2883793 ATAAATTTTA
2883803 AAATTTTAAAAATAAAAAAT-T
1 AAATTTTAAAAATAAAAAATAT
*
2883824 AAATTCTT-AAAATTAAAAATAT
1 AAATT-TTAAAAATAAAAAATAT
2883846 AAA
1 AAA
2883849 AATTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATTTTAAAAATAAAAAATAT
Found at i:2885408 original size:27 final size:27
Alignment explanation
Indices: 2885350--2885413 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
2885340 AGTGGACGAC
*
2885350 TTATAAATA-AAAAATTAATAACTTTA
1 TTATAAATATAAAAATTAATAACTTAA
2885376 TT-TAAATATAATTAAA-TAATAA-TTAA
1 TTATAAATATAA--AAATTAATAACTTAA
2885402 TTATAAA-ATAAA
1 TTATAAATATAAA
2885414 TGTTAAAGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
24 1 0.03
25 6 0.18
26 13 0.39
27 10 0.30
28 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (27 bp):
TTATAAATATAAAAATTAATAACTTAA
Found at i:2887921 original size:62 final size:62
Alignment explanation
Indices: 2887824--2887947 Score: 221
Period size: 62 Copynumber: 2.0 Consensus size: 62
2887814 AATAATGTCC
*
2887824 AAAATTAATTAGAATTTCCTTTCCCAATAAAGAATGAACTATATTCCAACAATAGAGGAAAA
1 AAAATTAATTAGAATTTCCTTTCCCAATAAAGAATGAACTATATTCCAACAATAAAGGAAAA
* *
2887886 AAAATTAATTAGAATTTCCTTTCCCAATAAAGAATGAATTGTATTCCAACAATAAAGGAAAA
1 AAAATTAATTAGAATTTCCTTTCCCAATAAAGAATGAACTATATTCCAACAATAAAGGAAAA
2887948 CATGTGTGTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (62 bp):
AAAATTAATTAGAATTTCCTTTCCCAATAAAGAATGAACTATATTCCAACAATAAAGGAAAA
Found at i:2888698 original size:18 final size:18
Alignment explanation
Indices: 2888652--2888687 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2888642 TATGTGAAAT
*
2888652 AAATTACATAATATATAA
1 AAATAACATAATATATAA
*
2888670 AAATAATATAATATATAA
1 AAATAACATAATATATAA
2888688 GTAAAACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATAACATAATATATAA
Found at i:2890992 original size:469 final size:470
Alignment explanation
Indices: 2890080--2891020 Score: 1611
Period size: 469 Copynumber: 2.0 Consensus size: 470
2890070 AGTGGAAAAA
*
2890080 GTATGAGGGGTTAAATCACAATTTTACCAAAATAAGTGATGAGTCAATGGAGGAATTTTGAAGAA
1 GTATGAGGGGTTAAATCACAATTTTACCAAAATAAGTGATGAATCAATGGAGGAATTTTGAAGAA
2890145 TCAGAAGGAGCAAAATGGTCATTTAGAAAGGAAGATAATTTTGAAGAGTAATGATGATGTTGGTG
66 TCAGAAGGAGCAAAATGGTCATTTAGAAAGGAAGATAATTTTGAAGAGTAATGATGATGTTGGTG
*
2890210 ATATTTTAAAATAAATAAATAAATAATAGTTTATTAATATTTTGATTTAATTTTTAATTATATTT
131 ATATTTTAAAATAAATAAATAAAAAATAGTTTATTAATATTTTGATTTAATTTTTAATTATATTT
*
2890275 TATTATTATTTTATTTAATATATAAGGGAAGAAAGATGAAGAATTCTCTTTATCTTTCCATGCAA
196 TATTATTATTTTATTTAATATATAAGGGAAGAAAGATGAAGAATTCTCTTCATCTTTCCATGCAA
2890340 CCAACGTGAGAAGAGAAAAGAAAAAAAAAGAAATTTTCTTTTCTTTACAATTGGTCCTTTTTACC
261 CCAACGTGAGAAGAGAAAAG-AAAAAAAAGAAATTTTCTTTTCTTTACAATTGGTCCTTTTTACC
*
2890405 AAAAATTCACCATTTTCACTTAGAAATCAAAAGAATTTTCATAGCTACCAAAAGAGAAAAATAAT
325 AAAAATTCACCATTTTCACTTAGAAATCAAAAGAACTTTCATAGCTACCAAAAGAGAAAAATAAT
* *
2890470 AAGGAGACTATAGGGAGCTAGAATATCAAGTTAGATTCAAGAAATAGAAGCTGGAGGAGAGAGAA
390 AAGAAGACTATAGGGAGCTAGAATATCAAGTTAGATTCAAGAAATAGAAGCTGGAGAAGAGAGAA
*
2890535 AATTAAGTTAAAGATT
455 AATCAAGTTAAAGATT
*
2890551 GTATGAGGGGTTAAATCATAATTTTACCAAAA-AAGTGATGAATCAATGGAGGAATTTTGAAGAA
1 GTATGAGGGGTTAAATCACAATTTTACCAAAATAAGTGATGAATCAATGGAGGAATTTTGAAGAA
* *
2890615 TCATAACGG-GCAAAATGGTCATTTAGCAAGGAAGATAATTTTGAAGAGTAATGATGATGTTGGT
66 TCAGAA-GGAGCAAAATGGTCATTTAGAAAGGAAGATAATTTTGAAGAGTAATGATGATGTTGGT
* * * *
2890679 GATATTTTAGATTAATTAAATAAAAAATTAGTTTATTAATATTTTGATTTGATTTTTAATTATAT
130 GATATTTTAAAATAAATAAATAAAAAA-TAGTTTATTAATATTTTGATTTAATTTTTAATTATAT
* *
2890744 TTTATTATTATTTTATTTAGTATATTAGGGAAGAAAGATGAAGAATTCTCTTCATCTTTCCATGC
194 TTTATTATTATTTTATTTAATATATAAGGGAAGAAAGATGAAGAATTCTCTTCATCTTTCCATGC
* *
2890809 AACCAATGTGAGAAGAGAAAAG-AAAGAAAGAAATTTTCTTTTCTTTACAATTTGGT-CTTTTTA
259 AACCAACGTGAGAAGAGAAAAGAAAAAAAAGAAATTTTCTTTTCTTTACAA-TTGGTCCTTTTTA
* *
2890872 CCAAAAATTCACCATTTTCACTTTGAAATCAAAAGAACTTTCATAGCTACCAAGAGAGAAAAATA
323 CCAAAAATTCACCATTTTCACTTAGAAATCAAAAGAACTTTCATAGCTACCAAAAGAGAAAAATA
* *
2890937 ATAAGAAGACTATGGGGAGCTAGAATATCAAGTTGGATTCAAGAAATAGAAGCTGGAGAAGAGAG
388 ATAAGAAGACTATAGGGAGCTAGAATATCAAGTTAGATTCAAGAAATAGAAGCTGGAGAAGAGAG
*
2891002 AAAATCAAGTTAAATATT
453 AAAATCAAGTTAAAGATT
2891020 G
1 G
2891021 AAATCAATAG
Statistics
Matches: 444, Mismatches: 23, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
469 174 0.39
470 118 0.27
471 152 0.34
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.33
Consensus pattern (470 bp):
GTATGAGGGGTTAAATCACAATTTTACCAAAATAAGTGATGAATCAATGGAGGAATTTTGAAGAA
TCAGAAGGAGCAAAATGGTCATTTAGAAAGGAAGATAATTTTGAAGAGTAATGATGATGTTGGTG
ATATTTTAAAATAAATAAATAAAAAATAGTTTATTAATATTTTGATTTAATTTTTAATTATATTT
TATTATTATTTTATTTAATATATAAGGGAAGAAAGATGAAGAATTCTCTTCATCTTTCCATGCAA
CCAACGTGAGAAGAGAAAAGAAAAAAAAGAAATTTTCTTTTCTTTACAATTGGTCCTTTTTACCA
AAAATTCACCATTTTCACTTAGAAATCAAAAGAACTTTCATAGCTACCAAAAGAGAAAAATAATA
AGAAGACTATAGGGAGCTAGAATATCAAGTTAGATTCAAGAAATAGAAGCTGGAGAAGAGAGAAA
ATCAAGTTAAAGATT
Found at i:2892924 original size:49 final size:49
Alignment explanation
Indices: 2892813--2892943 Score: 122
Period size: 49 Copynumber: 2.6 Consensus size: 49
2892803 ATAAGCGTCC
* * ** *
2892813 CGATATATGGCTCTTCATGAACTTCCCGTTGATTGGCTCTTTGTGAGCTTCT
1 CGATATATGGCT-TTC-TGAGCTTCCCGTT-ATTAGCTCGCTGTGAACTTCT
*
2892865 TGAT-TAATGGCTTTCTGGAGCTTCCCGTTATTAGCTCGCT-TGAACTTCT
1 CGATAT-ATGGCTTTCT-GAGCTTCCCGTTATTAGCTCGCTGTGAACTTCT
* *
2892914 CGATATATGGCTATCCAGAGCTTCCCGTTA
1 CGATATATGGCT-TTCTGAGCTTCCCGTTA
2892944 ATGGCTCTAC
Statistics
Matches: 66, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
49 30 0.45
50 12 0.18
51 15 0.23
52 9 0.14
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (49 bp):
CGATATATGGCTTTCTGAGCTTCCCGTTATTAGCTCGCTGTGAACTTCT
Found at i:2892947 original size:24 final size:24
Alignment explanation
Indices: 2892920--2892967 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2892910 TTCTCGATAT
* *
2892920 ATGGCTATCCAGAGCTTCCCGTTA
1 ATGGCTATACAGAGCTACCCGTTA
*
2892944 ATGGCTCTACAGAGCTACCCGTTA
1 ATGGCTATACAGAGCTACCCGTTA
2892968 TTGGTTCGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (24 bp):
ATGGCTATACAGAGCTACCCGTTA
Found at i:2898880 original size:26 final size:25
Alignment explanation
Indices: 2898845--2898910 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
2898835 GCAGCTCTTA
* * *
2898845 TGAGCGTCCCGTTATATGGCTCTTTG
1 TGAGCTTCCCGTTA-AAGGCTATTTG
*
2898871 TGAGCTTCCCAATTAAAGGCTATTTG
1 TGAGCTTCCC-GTTAAAGGCTATTTG
2898897 TGAGCTTCCCGTTA
1 TGAGCTTCCCGTTA
2898911 GTGATCGCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 28 0.82
27 3 0.09
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (25 bp):
TGAGCTTCCCGTTAAAGGCTATTTG
Found at i:2900218 original size:20 final size:20
Alignment explanation
Indices: 2900193--2900239 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
2900183 TTGCACCTTG
*
2900193 GAAAAATTTTGAAATTTTGT
1 GAAAAATTTTGAAATTTTAT
2900213 GAAAAATTTTGAAATTTTAT
1 GAAAAATTTTGAAATTTTAT
2900233 GAAAAAT
1 GAAAAAT
2900240 ACCCTGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (20 bp):
GAAAAATTTTGAAATTTTAT
Found at i:2905507 original size:18 final size:19
Alignment explanation
Indices: 2905463--2905507 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
2905453 ATGCTATTGG
*
2905463 ATTTTGGT-TTTGATGTAT
1 ATTTTGGTATTTAATGTAT
*
2905481 A-TATGGTATTTAAT-TAT
1 ATTTTGGTATTTAATGTAT
2905498 ATTTTGGTAT
1 ATTTTGGTAT
2905508 ATAGTTAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (19 bp):
ATTTTGGTATTTAATGTAT
Found at i:2909365 original size:21 final size:20
Alignment explanation
Indices: 2909331--2909384 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
2909321 TGCATTTAAA
*
2909331 CTTTTTAAAGTTTAATCATT
1 CTTTTTAAATTTTAATCATT
* *
2909351 CTTTTTAAAATTTTAGTTATT
1 CTTTTT-AAATTTTAATCATT
2909372 C-TTTTAAATTTTA
1 CTTTTTAAATTTTA
2909385 TGTTAAACGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.27
20 10 0.33
21 12 0.40
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (20 bp):
CTTTTTAAATTTTAATCATT
Found at i:2909382 original size:19 final size:20
Alignment explanation
Indices: 2909331--2909389 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
2909321 TGCATTTAAA
* * *
2909331 CTTTTTAAAGTTTAATCATT
1 CTTTTTAAATTTTAGTTATT
2909351 CTTTTTAAAATTTTAGTTATT
1 CTTTTT-AAATTTTAGTTATT
2909372 C-TTTTAAATTTTATGTTA
1 CTTTTTAAATTTTA-GTTA
2909390 AACGTTATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.24
20 14 0.41
21 12 0.35
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.59
Consensus pattern (20 bp):
CTTTTTAAATTTTAGTTATT
Found at i:2919995 original size:49 final size:49
Alignment explanation
Indices: 2919941--2920036 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
2919931 ATTATTTTAA
* * *
2919941 AATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTGT
1 AATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTGT
2919990 AATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
1 AATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
2920037 AGTTTTAGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (49 bp):
AATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTGT
Found at i:2922990 original size:33 final size:31
Alignment explanation
Indices: 2922948--2923029 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 31
2922938 CAACCCACTA
2922948 CCACCTCAGTACTCCAGTCATCCTAGCTCGTAT
1 CCACCTCAGTACTCC-GTCATCC-AGCTCGTAT
* *
2922981 CCACCTCAGTACTACGCTTCTTCCAGCTCGTAT
1 CCACCTCAGTACT-C-CGTCATCCAGCTCGTAT
* *
2923014 ACACCTTAGTACTCCG
1 CCACCTCAGTACTCCG
2923030 CTCCTTTCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
31 1 0.02
32 1 0.02
33 33 0.79
34 6 0.14
35 1 0.02
ACGTcount: A:0.21, C:0.39, G:0.12, T:0.28
Consensus pattern (31 bp):
CCACCTCAGTACTCCGTCATCCAGCTCGTAT
Found at i:2929414 original size:61 final size:60
Alignment explanation
Indices: 2929347--2929498 Score: 162
Period size: 60 Copynumber: 2.5 Consensus size: 60
2929337 CCTCTATGGA
* * * *
2929347 AAAACTCTAGAAGGGAAAGCCTTGGTGGTAAGTATTGAATATTAAAGAATGCCTTTGTGGT
1 AAAACTCTAGAAGGGAAAGCCTTAGTGGCAAGTATTGAAT-GTAAAGAATGCCTTTGTCGT
* * * * *
2929408 ACAACTCCAGACAGGGAAA-CCTTAGTGGCGAGTATTGGATGTAAAGAGTGCCTTTGTCGT
1 AAAACTCTAGA-AGGGAAAGCCTTAGTGGCAAGTATTGAATGTAAAGAATGCCTTTGTCGT
* * * *
2929468 AAAACTCTTGAAGGGTAAGCTTTCGTGGCAA
1 AAAACTCTAGAAGGGAAAGCCTTAGTGGCAA
2929499 ACCTCTTAAG
Statistics
Matches: 73, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
59 6 0.08
60 34 0.47
61 26 0.36
62 7 0.10
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (60 bp):
AAAACTCTAGAAGGGAAAGCCTTAGTGGCAAGTATTGAATGTAAAGAATGCCTTTGTCGT
Found at i:2931408 original size:13 final size:13
Alignment explanation
Indices: 2931390--2931416 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2931380 TTTCACTTTC
2931390 AGGAGTTAGGCTG
1 AGGAGTTAGGCTG
2931403 AGGAGTTAGGCTG
1 AGGAGTTAGGCTG
2931416 A
1 A
2931417 CTTATGCGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.44, T:0.22
Consensus pattern (13 bp):
AGGAGTTAGGCTG
Found at i:2935701 original size:22 final size:22
Alignment explanation
Indices: 2935673--2935720 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
2935663 TTTACTCTAT
*
2935673 AATTTCAAATGTACGAAGACTA
1 AATTTCAAATATACGAAGACTA
*
2935695 AATTTCAAATATATGAAGACTA
1 AATTTCAAATATACGAAGACTA
2935717 AATT
1 AATT
2935721 CCTGAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (22 bp):
AATTTCAAATATACGAAGACTA
Found at i:2936684 original size:21 final size:23
Alignment explanation
Indices: 2936650--2936692 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
2936640 GCAACAACTT
*
2936650 TTTTTTATTAAAATATTTTTTTG
1 TTTTTTATTAAAATATTATTTTG
2936673 TTTTTT-TT-AAATATTATTTT
1 TTTTTTATTAAAATATTATTTT
2936693 ATTGGTTCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 2 0.11
23 6 0.32
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTTTTATTAAAATATTATTTTG
Found at i:2937132 original size:27 final size:27
Alignment explanation
Indices: 2937079--2937134 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
2937069 AGCACCTCTA
* **
2937079 GTGGCGCCTATCTGGTAGGCGCAACTG
1 GTGGAGCCTATCTGACAGGCGCAACTG
* *
2937106 GTGGAGCCTATCTGACAGGTGCGACTG
1 GTGGAGCCTATCTGACAGGCGCAACTG
2937133 GT
1 GT
2937135 TGAACAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.16, C:0.23, G:0.38, T:0.23
Consensus pattern (27 bp):
GTGGAGCCTATCTGACAGGCGCAACTG
Found at i:2937342 original size:60 final size:59
Alignment explanation
Indices: 2937273--2937390 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 59
2937263 ATACTAAACT
*
2937273 AAACACAACAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATT-ATTTTAAAATAATTAC
2937333 AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTATTTTAAAATAATTA
1 AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTATTTTAAAATAATTA
2937391 TAAAAAAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 15 0.26
60 42 0.74
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (59 bp):
AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTATTTTAAAATAATTAC
Found at i:2942054 original size:3 final size:3
Alignment explanation
Indices: 2942046--2942074 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
2942036 GTATAAAGAT
2942046 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
2942075 TCTCTTTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:2942759 original size:3 final size:3
Alignment explanation
Indices: 2942751--2942784 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
2942741 GTGCTATTAA
2942751 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
2942785 AATGGTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:2951409 original size:19 final size:19
Alignment explanation
Indices: 2951381--2951417 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
2951371 AATATGTAAT
2951381 TAGCTAATTACTAGGGATA
1 TAGCTAATTACTAGGGATA
*
2951400 TAGCTGATTACTAGGGAT
1 TAGCTAATTACTAGGGAT
2951418 TTAATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
TAGCTAATTACTAGGGATA
Found at i:2956737 original size:13 final size:14
Alignment explanation
Indices: 2956701--2956788 Score: 71
Period size: 13 Copynumber: 6.6 Consensus size: 14
2956691 GTATATACAA
*
2956701 TTCATATAA-CAAT
1 TTCATATAATCGAT
2956714 TTCCATATAATCGA-
1 TT-CATATAATCGAT
2956728 TTCATATAATC-AT
1 TTCATATAATCGAT
* *
2956741 TTCGTAT-ATCTAT
1 TTCATATAATCGAT
*
2956754 TTCCATATAACCGA-
1 TT-CATATAATCGAT
2956768 TTCATATAATC-AT
1 TTCATATAATCGAT
*
2956781 TTTATATA
1 TTCATATA
2956789 TTTATTTTCC
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
12 5 0.08
13 36 0.59
14 15 0.25
15 5 0.08
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.43
Consensus pattern (14 bp):
TTCATATAATCGAT
Found at i:2956756 original size:40 final size:40
Alignment explanation
Indices: 2956712--2956866 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 40
2956702 TCATATAACA
* **
2956712 ATTTCCATATAATCGATTCATATAATCATTTCGTATATCT
1 ATTTCCATATAACCGATTCATATAATCATTTTATATATCT
*
2956752 ATTTCCATATAACCGATTCATATAATCATTTTATATATTT
1 ATTTCCATATAACCGATTCATATAATCATTTTATATATCT
* *
2956792 ATTTTCCACATAACCGATTCATATATTCATTTTATATATTCAT
1 A-TTTCCATATAACCGATTCATATAATCATTTTATATA-TC-T
* *
2956835 TTTTCCATATAACCGAATCATATAATCATTTT
1 ATTTCCATATAACCGATTCATATAATCATTTT
2956867 TCCATATAAC
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
40 37 0.37
41 34 0.34
42 29 0.29
43 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.03, T:0.46
Consensus pattern (40 bp):
ATTTCCATATAACCGATTCATATAATCATTTTATATATCT
Found at i:2956760 original size:27 final size:24
Alignment explanation
Indices: 2956668--2956764 Score: 86
Period size: 27 Copynumber: 3.7 Consensus size: 24
2956658 CCCTTTTTAC
*
2956668 ATATCTATCCATATAAACATTTCGT
1 ATATCTATTCATAT-AACATTTCGT
* *
2956693 ATATACAATTCATATAACAATTTCCAT
1 ATAT-CTATTCATATAAC-ATTT-CGT
*
2956720 ATAATCGATTCATATAATCATTTCGT
1 AT-ATCTATTCATATAA-CATTTCGT
2956746 ATATCTATTTCCATATAAC
1 ATATCTA-TT-CATATAAC
2956765 CGATTCATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
25 11 0.19
26 19 0.32
27 26 0.44
28 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (24 bp):
ATATCTATTCATATAACATTTCGT
Found at i:2956844 original size:14 final size:13
Alignment explanation
Indices: 2956812--2956837 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2956802 TAACCGATTC
2956812 ATATATTCATTTT
1 ATATATTCATTTT
2956825 ATATATTCATTTT
1 ATATATTCATTTT
2956838 TCCATATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATATTCATTTT
Found at i:2956857 original size:29 final size:29
Alignment explanation
Indices: 2956825--2956895 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
2956815 TATTCATTTT
* *
2956825 ATATATTCATTTTTCCATATAACCGAATC
1 ATATAATCATTTTTCCATATAACAGAATC
*
2956854 ATATAATCATTTTTCCATATAACAGATTC
1 ATATAATCATTTTTCCATATAACAGAATC
2956883 ATATAATCATTTT
1 ATATAATCATTTT
2956896 ATATATTCGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.44
Consensus pattern (29 bp):
ATATAATCATTTTTCCATATAACAGAATC
Found at i:2956864 original size:83 final size:81
Alignment explanation
Indices: 2956713--2956866 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
2956703 CATATAACAA
* * * *
2956713 TTTCCATATAATCGATTCATATAATCATTTCGTATATCTATTTCCATATAACCGATTCATATAAT
1 TTTCCACATAACCGATTCATATAATCATTTCATATATCTATTTCCATATAACCGAATCATATAAT
2956778 CATTTTATATATTTAT
66 CATTTTATATATTTAT
* * *
2956794 TTTCCACATAACCGATTCATATATTCATTTTATATATTCATTTTTCCATATAACCGAATCATATA
1 TTTCCACATAACCGATTCATATAATCATTTCATATA-TC-TATTTCCATATAACCGAATCATATA
2956859 ATCATTTT
64 ATCATTTT
2956867 TCCATATAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
81 31 0.48
82 2 0.03
83 31 0.48
ACGTcount: A:0.33, C:0.18, G:0.03, T:0.46
Consensus pattern (81 bp):
TTTCCACATAACCGATTCATATAATCATTTCATATATCTATTTCCATATAACCGAATCATATAAT
CATTTTATATATTTAT
Found at i:2956986 original size:25 final size:25
Alignment explanation
Indices: 2956954--2957021 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
2956944 ACGCGAGAAT
*
2956954 AATGCTCATACAAGCTATAACTGTA
1 AATGCTCACACAAGCTATAACTGTA
* * *
2956979 ATTGCTCACACGAGCTATAATTGTA
1 AATGCTCACACAAGCTATAACTGTA
2957004 AATGCTCACACAAGCTAT
1 AATGCTCACACAAGCTAT
2957022 GAAATGGCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (25 bp):
AATGCTCACACAAGCTATAACTGTA
Found at i:2959102 original size:55 final size:55
Alignment explanation
Indices: 2959036--2959146 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
2959026 CAAAGGCGCA
2959036 GTACGCCATGTTATTAGAGTAACAAAGCTATTTGCATTGTGAGTATAGGAATTGG
1 GTACGCCATGTTATTAGAGTAACAAAGCTATTTGCATTGTGAGTATAGGAATTGG
*
2959091 GTACGCCATGTTATTAGAGTAACAAAGCTATTTGCATTGTGAGTATAGTAATTGG
1 GTACGCCATGTTATTAGAGTAACAAAGCTATTTGCATTGTGAGTATAGGAATTGG
2959146 G
1 G
2959147 ACTTCTCTTG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (55 bp):
GTACGCCATGTTATTAGAGTAACAAAGCTATTTGCATTGTGAGTATAGGAATTGG
Found at i:2960330 original size:43 final size:43
Alignment explanation
Indices: 2960266--2960491 Score: 278
Period size: 43 Copynumber: 5.3 Consensus size: 43
2960256 TGCTACGAAA
*
2960266 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTTTTCCAC
* * * *
2960309 AAACGCCGCTAAAGATTATGTTCCTTGGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTTTTCCAC
* *
2960352 AGA-GTCCGCTAAAGATCATGTTCTTTAGTGG-ATCTTTTTCCAC
1 AAACG-CCGCTAAAGATCATGTTCTTTAGCGGCA-CTTTTTCCAC
* * *
2960395 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTGTTCCGC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTTTTCCAC
* * * *
2960438 AAACGCCACTAAAGGTCATGTTCTTTTAGCGGC-GTTTTTACAC
1 AAACGCCGCTAAAGATCATGTTC-TTTAGCGGCACTTTTTCCAC
2960481 AAACGCCGCTA
1 AAACGCCGCTA
2960492 TTTGTTTGGT
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
42 1 0.01
43 144 0.93
44 10 0.06
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTTTTCCAC
Found at i:2960971 original size:21 final size:20
Alignment explanation
Indices: 2960925--2960976 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
2960915 TTTCTTTTGA
* *
2960925 ACCTCTGCTTCTCTCGTTCC
1 ACCTCTGCTTCCCTCGTGCC
*
2960945 AGCCTCTGCTTCCCTTGCTGCC
1 A-CCTCTGCTTCCCTCG-TGCC
2960967 ACCTCTGCTT
1 ACCTCTGCTT
2960977 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 22 0.81
22 4 0.15
ACGTcount: A:0.06, C:0.44, G:0.13, T:0.37
Consensus pattern (20 bp):
ACCTCTGCTTCCCTCGTGCC
Found at i:2965959 original size:73 final size:72
Alignment explanation
Indices: 2965817--2965975 Score: 171
Period size: 73 Copynumber: 2.2 Consensus size: 72
2965807 CGTTTGGTAG
* * *
2965817 AAAACGCCACTAAGAACACAAATTAAAACGCAACATTTTGCCATTTTTGAAACAAATTTGCGGCA
1 AAAACGCCACTAAGAACACAAAATAAAACGCAACATTTTGCCATCTATG-AACAAATTTGCGGCA
*
2965882 TTTTT-TT
65 TTTTTACT
* * * * *
2965889 AGAAACGCCACTAGGAACACAAAATAAAACGTCATCGTTTTG-CATACTATG-ACATATTTGTGG
1 A-AAACGCCACTAAGAACACAAAATAAAACG-CAACATTTTGCCAT-CTATGAACAAATTTGCGG
2965952 CATTTTTTACT
63 CA-TTTTTACT
2965963 AAAACGCCACTAA
1 AAAACGCCACTAA
2965976 TGCATAAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
72 13 0.18
73 46 0.64
74 13 0.18
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (72 bp):
AAAACGCCACTAAGAACACAAAATAAAACGCAACATTTTGCCATCTATGAACAAATTTGCGGCAT
TTTTACT
Found at i:2967162 original size:114 final size:113
Alignment explanation
Indices: 2966803--2967730 Score: 1027
Period size: 114 Copynumber: 8.2 Consensus size: 113
2966793 GACAAATAAT
* * * * * * *
2966803 TTTTTTACGGCGCTTTCCCAAAAACGCTGCTAAATCCCAGAGCATTAGCGGCACTGT-ATTAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCT-TCCTTAAAA
* * * * * **
2966867 ACGTCGCTAAAGCCCCCGAAAGGTCAGAAAATGGCGTCGTTGGGCTTATAT
65 ATGCCGCTAAA-TCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA-GG
* * * * * *
2966918 TTTTTTGCGGTGCTTTATCAAAAACGCCGCTAAATCCCTAAGCATTAGCGGTGCTTTCTTAAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAA
** * ** *
2966983 TGCAACTAAATCCCCAAAATTTCAGAAAACGGCATCGTTGGGCTTAGG
66 TGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
* * * * * *
2967031 TTTTTTGCGGCGCTTTGTCAAAAAGGCCTCTAAAGCCCTGAGCAGTAGCGACAC-TCTCTTAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC-CTTAAAA
2967095 ATGCCGCTAAATCCCCGAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
65 ATGCCGCTAAATCCCCG-AAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
* * * **
2967145 TTTTTTGCGGCGCTTTGTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTCCTGGAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAA
* * * *
2967210 TGCCGCTAAATCCCCGAATGCTTAGAAAATGGCGTCGTTAGGCTTAGG
66 TGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
** * * *
2967258 TTTTTTTGCGGCATTTTCTCAAAAACGCCACTAAAGCCCTGAGCATTAGCGACGCTTCCTAAAAA
1 -TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAA
* * * * *
2967323 ACGCCTCAAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTAGG
65 ATGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
* * *
2967372 TTTTTTACGGTGCTTTCTCAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCCTT-CTTAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCG-CTTCCTTAAAA
* * *
2967436 ACGCCGCTAAATCCCCGAAAAGCTCAAAAAACGGCATCGTTGGGCTTAGG
65 ATGCCGCTAAATCCCCG-AAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
* * *
2967486 TTTTTTTGCGGCGCTTTCTCGAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTCAAAA
1 -TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAA
* * * * *
2967551 ATGCCGCTAAATCCCCGGATG-ACAAAAAACGGCGTCGTTGGGGTTAGG
65 ATGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
** * * * * *
2967599 TTTTTTTATGGTGCTTTCTTAAAAATGCCGCTAAATCCCTGAGCATTAGCGGCGCTTCCTCAAAA
1 -TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAA
* * * * * *
2967664 ATACCGTTAAATCCCTGAATGCTCAGAAAATGGGGTCGTTGGGCTTAGG
65 ATGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
*
2967713 TTTTTTGCGGCGTTTTCT
1 TTTTTTGCGGCGCTTTCT
2967731 GGAAATCACC
Statistics
Matches: 695, Mismatches: 108, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
112 1 0.00
113 276 0.40
114 287 0.41
115 131 0.19
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (113 bp):
TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAA
TGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
Found at i:2967587 original size:341 final size:340
Alignment explanation
Indices: 2966803--2967730 Score: 1130
Period size: 341 Copynumber: 2.7 Consensus size: 340
2966793 GACAAATAAT
* * * * * * * * *
2966803 TTTTTTACGGCGCTTTCCCAAAAACGCTGCTAAATCCCAGAGCATTAGCGGCACTGT-ATTAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCT-TCCTCAAAA
* * * * * * **
2966867 ACGTCGCTAAAGCCCCCGAAAGGTCAGAAAATGGCGTCGTTGGGCTTATATTTTTTTGCGGTGCT
65 ATGCCGCTAAA-TCCCCGAATGCT-AAAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGCGGTGCT
* * * * * * *
2966932 TTATCAAAAACGCCGCTAAATCCCTAAGCATTAGCGGTGCTTTCTTAAAAATGCAACTAAATCCC
128 TTCTCAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTCCTAAAAAACGCATCTAAATCCC
* * * * * *
2966997 CAAAAT-TTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTGCGGCGCTTTGTCAAAAAGGCCTC
193 C-GAATGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTACGGCGCTTTCTCAAAAACGCCAC
* *
2967061 TAAAGCCCTGAGCAGTAGCGACACTCTCTTAAAAATGCCGCTAAATCCCCGAAAAGCTCAGAAAA
257 TAAAGCCCTGAGCAGTAGCGACACTCTCTTAAAAACGCCGCTAAATCCCCGAAAAGCTCAAAAAA
*
2967126 CGGCGTCGTTGGGCTTAGG
322 CGGCATCGTTGGGCTTAGG
* * **
2967145 TTTTTTGCGGCGCTTTGTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTCCTGGAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTCAAAAA
* * ***
2967210 TGCCGCTAAATCCCCGAATGCTTAGAAAATGGCGTCGTTAGGCTTAGGTTTTTTTGCGGCATTTT
66 TGCCGCTAAATCCCCGAATGC-TAAAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGCGGTGCTTT
* * * * *
2967275 CTCAAAAACGCCACTAAAGCCCTGAGCATTAGCGACGCTTCCTAAAAAACGCCTCAAAATCCCCG
130 CTCAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTCCTAAAAAACGCATCTAAATCCCCG
*
2967340 AATGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTACGGTGCTTTCTCAAAAACGCCACTAA
195 AATGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTACGGCGCTTTCTCAAAAACGCCACTAA
* * *
2967405 AGCCCTGAGCATTAGCGGCGC-CTTCTTAAAAACGCCGCTAAATCCCCGAAAAGCTCAAAAAACG
260 AGCCCTGAGCAGTAGCGACACTC-TCTTAAAAACGCCGCTAAATCCCCGAAAAGCTCAAAAAACG
2967469 GCATCGTTGGGCTTAGG
324 GCATCGTTGGGCTTAGG
*
2967486 TTTTTTTGCGGCGCTTTCTCGAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTCAAAA
1 -TTTTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTCAAAA
* * * **
2967551 ATGCCGCTAAATCCCCGGATGAC-AAAAAACGGCGTCGTTGGGGTTAGGTTTTTTTATGGTGCTT
65 ATGCCGCTAAATCCCCGAATG-CTAAAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGCGGTGCTT
* * *
2967615 TCTTAAAAATGCCGCTAAATCCCTGAGCATTAGCGGCGCTTCCTCAAAAATAC-CGT-TAAATCC
129 TCTCAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTCCT-AAAAA-ACGCATCTAAATCC
* * ** * *
2967678 CTGAATGCTCAGAAAATGGGGTCGTTGGGCTTAGGTTTTTTGCGGCGTTTTCT
192 CCGAATGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTACGGCGCTTTCT
2967731 GGAAATCACC
Statistics
Matches: 501, Mismatches: 77, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
340 4 0.01
341 348 0.69
342 146 0.29
343 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (340 bp):
TTTTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTCAAAAA
TGCCGCTAAATCCCCGAATGCTAAAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGCGGTGCTTTC
TCAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTCCTAAAAAACGCATCTAAATCCCCGA
ATGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTACGGCGCTTTCTCAAAAACGCCACTAAA
GCCCTGAGCAGTAGCGACACTCTCTTAAAAACGCCGCTAAATCCCCGAAAAGCTCAAAAAACGGC
ATCGTTGGGCTTAGG
Found at i:2980809 original size:61 final size:60
Alignment explanation
Indices: 2980722--2980880 Score: 135
Period size: 61 Copynumber: 2.6 Consensus size: 60
2980712 TGGCCAAGGT
* * * * *
2980722 TTTCCTGTCCAGAGTTTTTT-CGCAAAGGCGTTCCTTTAGATACAGAACTCTCCAC-ATAGGC
1 TTTCCTGT-CAAAATTTTTTCCACAAAGG-GTTCCTTTAAATACAGAACTCCCCACAAT-GGC
* ** *
2980783 TTTCGTGTCAAAATTTTTTCCACAAAGGAAG-TCCTTTAAATTTAGTACTCCCCACAATGGC
1 TTTCCTGTCAAAATTTTTTCCACAAAGG--GTTCCTTTAAATACAGAACTCCCCACAATGGC
* * * *
2980844 TTTCCTGTCTAGATTTTTGCCACAAAGGTTTCCTTTA
1 TTTCCTGTCAAAATTTTTTCCACAAAGGGTTCCTTTA
2980881 TTTGGTGTTT
Statistics
Matches: 79, Mismatches: 15, Indels: 9
0.77 0.15 0.09
Matches are distributed among these distances:
60 16 0.20
61 60 0.76
62 3 0.04
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (60 bp):
TTTCCTGTCAAAATTTTTTCCACAAAGGGTTCCTTTAAATACAGAACTCCCCACAATGGC
Found at i:2989367 original size:50 final size:50
Alignment explanation
Indices: 2989248--2989589 Score: 253
Period size: 50 Copynumber: 6.7 Consensus size: 50
2989238 TGATAATAAC
* * * *
2989248 ATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTT-TCATGT--
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-GGTTCTCATATCG
* * *
2989296 ACTGCCAATGCCATATCCCAGATATGGTGTTACATGGGGGTTCTCATATCG
1 A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGGTTCTCATATCG
* * *
2989347 ATGCCCATGCCATGTCCCAGACATGGTCTTAC--GGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGG--TTCTCATATCG
* * *** * * *
2989397 GTGCCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCGTCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGGTTCTCATATCG
* * * *** * *
2989447 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGGTTCTCATATCG
* * * ***
2989497 ATGCCAACGCCATGTCCTAGGCATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGGTTCTCAT-A--TC---G
* *
2989553 ATGCCAATGCCATGTTCCAGACATGGTCATACATGGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
2989590 ATCTCTTTAC
Statistics
Matches: 245, Mismatches: 35, Indels: 20
0.82 0.12 0.07
Matches are distributed among these distances:
48 9 0.04
49 36 0.15
50 162 0.66
51 1 0.00
52 3 0.01
53 1 0.00
56 33 0.13
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGGTTCTCATATCG
Found at i:2989430 original size:100 final size:100
Alignment explanation
Indices: 2989248--2989585 Score: 306
Period size: 100 Copynumber: 3.3 Consensus size: 100
2989238 TGATAATAAC
* * ** * *
2989248 ATGCCAAAGCCATGTCCTAGACATGGTCTTACATGG-GATGTTTCATGT--ACTGCCAATGCCAT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACA-GGAGACCTCTCATCTCGA-TGCCAATGCCAT
* * * * ***
2989310 ATCCCAGATATGGTGTTACATGGGGGTTCTCATATCG
64 GTTCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * * *
2989347 ATGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGCCATGT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATCTCGATGCCAATGCCATGT
* * *
2989412 TCCAGACATGGTCTTACATGGGACCTCTCGTCTTG
66 TCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * *
2989447 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTTGATGCCAACGCCATG-
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATCTCGATGCCAATGCCATGT
*
2989511 TCCTAGGCATGGTCTTACATGGGACCTCTCATAATCTCAATG
66 TCC-AGACATGGTCTTACATGGGACCTCTCAT-A--TC---G
* * *
2989553 ATGCCAATGCCATGTTCCAGACATGGTCATACA
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACA
2989586 TGGGATCTCT
Statistics
Matches: 193, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
98 2 0.01
99 40 0.21
100 120 0.62
103 1 0.01
106 30 0.16
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (100 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATCTCGATGCCAATGCCATGT
TCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:2989522 original size:150 final size:151
Alignment explanation
Indices: 2989248--2989595 Score: 387
Period size: 150 Copynumber: 2.3 Consensus size: 151
2989238 TGATAATAAC
* * * *
2989248 ATGCCAAAGCCATG-TCCTAGACATGGTCTTACATGGGATGTTTCATGTACTGCCAATGCCATAT
1 ATGCCAATGCCATGTTCC-AGACATGGTCTTACATGGGATCTCTCATGTACTGCCAACGCCATAT
* * * *** * *
2989312 CCCAGATATGGTGTTACATGGGGGTTCTCATATCGATGCCCATGCCATGTCCCAGACATGGTCTT
65 CCCAGACATGGTCTTACATGAGACCTCTCATATCGATGCCAACGCCATGTCCCAGACATGGTCTT
*
2989377 ACGGGGGACCTCTC-ATCTC-G
130 ACAGGGGACCTCTCAATCTCAG
* * * * ** *
2989397 GTGCCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCGTCTTGGTGCCAACGCCATGT
1 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCTCAT-GTACTGCCAACGCCATAT
* * * *
2989462 CCCAGACATGGTCTTACATGAGACCTCTCATCTTGATGCCAACGCCATGTCCTAGGCATGGTCTT
65 CCCAGACATGGTCTTACATGAGACCTCTCATATCGATGCCAACGCCATGTCCCAGACATGGTCTT
*
2989527 ACATGGGACCTCTCATAATCTCAATG
130 ACAGGGGACCTCTC--AATCTC-A-G
*
2989553 ATGCCAATGCCATGTTCCAGACATGGTCATACATGGGATCTCT
1 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
2989596 TTACCCAAAT
Statistics
Matches: 163, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
149 36 0.22
150 81 0.50
153 5 0.03
156 41 0.25
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (151 bp):
ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCTCATGTACTGCCAACGCCATATC
CCAGACATGGTCTTACATGAGACCTCTCATATCGATGCCAACGCCATGTCCCAGACATGGTCTTA
CAGGGGACCTCTCAATCTCAG
Found at i:2989966 original size:30 final size:30
Alignment explanation
Indices: 2989932--2989988 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
2989922 CCTCGACTCT
2989932 AACTTTGAAAAAATTACAATTTTGCCCTTA
1 AACTTTGAAAAAATTACAATTTTGCCCTTA
* * * *
2989962 AACTTTTACATAATTACACTTTTGCCC
1 AACTTTGAAAAAATTACAATTTTGCCC
2989989 CAAAGCTCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.05, T:0.39
Consensus pattern (30 bp):
AACTTTGAAAAAATTACAATTTTGCCCTTA
Found at i:2996470 original size:50 final size:50
Alignment explanation
Indices: 2996353--2996520 Score: 153
Period size: 50 Copynumber: 3.4 Consensus size: 50
2996343 TGATAATAAC
* * * *
2996353 ATGCCAAAGCCATGTCCCAGACATTGTCTTACATAGGATGTT-TCATGT--
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATCG
* * *
2996401 ACTGCCAATGCCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCG
1 A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCG
* * ** ** *
2996452 ATGCCCATGCCATGTCCCAGACATGGTTTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCG
* *
2996502 GTGCCAACGCCATGTCCCA
1 ATGCCAATGCCATGTCCCA
2996521 NNNNNNNNNN
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
48 4 0.04
49 36 0.38
50 55 0.57
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCG
Found at i:3020496 original size:16 final size:16
Alignment explanation
Indices: 3020475--3020509 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
3020465 GCTATGCATG
*
3020475 TAAAATATAAAAGACA
1 TAAAATACAAAAGACA
3020491 TAAAATACAAAAGACA
1 TAAAATACAAAAGACA
3020507 TAA
1 TAA
3020510 TAGTGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.17
Consensus pattern (16 bp):
TAAAATACAAAAGACA
Found at i:3022259 original size:27 final size:27
Alignment explanation
Indices: 3021940--3022296 Score: 364
Period size: 27 Copynumber: 13.2 Consensus size: 27
3021930 AGTATAACAC
*
3021940 TCATTTTACCCTAT-GAGGGTATTTCAG
1 TCATTTTACCCT-TCGAGGGTATTTCGG
* * **
3021967 TCATTTTACCCTTTGAGGGTATATCAA
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
3021994 TCATTTTACCCTT-TAGGGATATTTCGA
1 TCATTTTACCCTTCGAGGG-TATTTCGG
* *** **
3022021 TCCTTTTATATTTCTG-GGGTATTTCAA
1 TCATTTTACCCTTC-GAGGGTATTTCGG
* * * *
3022048 TAATTTTAGCCTT-TAGGGGTATTTCGA
1 TCATTTTACCCTTCGA-GGGTATTTCGG
* * *
3022075 TCATTTTACCTTTTGAGGGTATTTTGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
3022102 TCATTTTACCCTTTGCGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
*
3022129 TCATTTTACCCTTCGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
3022156 TCATTTTACCCTTCAAGAGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
3022183 TCATTTTACCCTTTGGGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
3022210 TCATTTTACCCTTCTG-GGGTATTTCGG
1 TCATTTTACCCTTC-GAGGGTATTTCGG
3022237 TCATTTTACCCTTCGAGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* * *
3022264 TCATTTTATCCTTCGATGGTATTTTGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
3022291 TCATTT
1 TCATTT
3022297 ACTAATGAAT
Statistics
Matches: 280, Mismatches: 41, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.02
27 269 0.96
28 5 0.02
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.45
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCGG
Found at i:3028313 original size:21 final size:19
Alignment explanation
Indices: 3028283--3028322 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
3028273 CTTCAAAAAT
3028283 AATTCAAGATAGTTTTTCAAA
1 AATTCAAGATA--TTTTCAAA
*
3028304 AATTCCAGATATTTTCAAA
1 AATTCAAGATATTTTCAAA
3028323 CCTATTCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (19 bp):
AATTCAAGATATTTTCAAA
Found at i:3028988 original size:28 final size:28
Alignment explanation
Indices: 3028955--3029035 Score: 99
Period size: 30 Copynumber: 2.8 Consensus size: 28
3028945 GTATCAGTAC
* *
3028955 AGTGTGGGCCTTAGCCCATTACAGTGAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
*
3028983 AGTGTGTAGGCCTTCGCCCAATACAGTAAT
1 AGTGTG--GGCCTTAGCCCAATACAGTAAT
* *
3029013 AGTGGGGGCCTTAGCCCGATACA
1 AGTGTGGGCCTTAGCCCAATACA
3029036 ATAGTCAGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.47
30 24 0.53
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:3029206 original size:26 final size:26
Alignment explanation
Indices: 3029150--3029223 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
3029140 ACACCAATAT
* *
3029150 CGCAGCAAAGCTGCTAGTAACAGTGA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
3029176 TGCAGCAAAGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* * *
3029202 CGCAGTATAGCTTCCAGTAACA
1 CGCAGCAAAGCTGCCAGTAACA
3029224 TTATATGTGG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:3029423 original size:27 final size:25
Alignment explanation
Indices: 3029399--3029680 Score: 199
Period size: 27 Copynumber: 10.6 Consensus size: 25
3029389 AGGAGTATGA
3029399 TAATCATTTTACCCTAT-GAGGGTATT
1 TAATCATTTTACCCT-TCG-GGGTATT
*
3029425 TCAGTCATTTTACCCTTCGGGGTATT
1 T-AATCATTTTACCCTTCGGGGTATT
*
3029451 TAGATCATTTTACCCTTCGAGGTTATT
1 TA-ATCATTTTACCCTTCG-GGGTATT
* * *
3029478 TCGATAATTTTACCCTTCGAGGGTCTT
1 T-AATCATTTTACCCTTCG-GGGTATT
* *
3029505 TCGATCATTTTACCCTTTGAGGGTATT
1 T-AATCATTTTACCCTTCG-GGGTATT
*
3029532 TCAGTCATTTTACCCTTCGAGGGTATT
1 T-AATCATTTTACCCTTCG-GGGTATT
* * *
3029559 TCGATCATTTTACCCTTCAAGAGTATT
1 T-AATCATTTTACCCTTC-GGGGTATT
*
3029586 TCAGTCATTTTACCCTTCGGGGGTATT
1 T-AATCATTTTACCCTTC-GGGGTATT
** *
3029613 TCGGTCATTTTACCATTCGAGGGTATT
1 T-AATCATTTTACCCTTCG-GGGTATT
* * * *
3029640 TCGATAATTTTGCCCTTTGAGGGTATT
1 T-AATCATTTTACCCTTCG-GGGTATT
3029667 TCAATCA-TTTACCC
1 T-AATCATTTTACCC
3029681 ATGAATCACA
Statistics
Matches: 217, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 32 0.15
27 184 0.85
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (25 bp):
TAATCATTTTACCCTTCGGGGTATT
Found at i:3029532 original size:54 final size:54
Alignment explanation
Indices: 3029401--3030165 Score: 470
Period size: 54 Copynumber: 14.1 Consensus size: 54
3029391 GAGTATGATA
*
3029401 ATCATTTTACCCTAT-GAGGGTATTTCAGTCATTTTACCCTTCG-GGGTATTTAG
1 ATCATTTTACCCT-TCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* * *
3029454 ATCATTTTACCCTTCGAGGTTATTTC-GATAATTTTACCCTTCGAGGGTCTTTCG
1 ATCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTACCCTTCGAGGGTATTTCG
*
3029508 ATCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* * *
3029562 ATCATTTTACCCTTCAAGAGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* * * * * *
3029616 GTCATTTTACCATTCGAGGGTATTTC-GATAATTTTGCCCTTTGAGGGTATTTCA
1 ATCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTACCCTTCGAGGGTATTTCG
* ** **** * *
3029670 ATCA-TTTACCCAT-GA----ATCACAAGTTGGGCTTGCCACTT-GAGCG-A--TC-
1 ATCATTTTACCCTTCGAGGGTATTTC-AG-TCATTTTACC-CTTCGAGGGTATTTCG
* *** *** ** * * * * * *
3029716 ATACGTGTATGTAGTATGTC-ATACTCAGTAACAGTCATGTAAATAACATAGAACAAATCGGTCA
1 AT-CAT-T-T-TACCCT-TCGAGGGT-A-TTTCAGTCAT-T--TTACCCT---TC-GA-GGGT-A
*
3029780 -TAC-
50 TTTCG
* * * * ** * **
3029783 AGTCATTTCA-ACTCCTAGGAGTATAACAATCA-TTTACCCTAAGAGGGTATTTC-
1 A-TCATTTTACCCTTCGAGG-GTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* *
3029836 AGTCATTTTACCCTTCGAGGGTATTT-TGATCATTTTACCCTTCGAGGTTATTT-G
1 A-TCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTACCCTTCGAGGGTATTTCG
* * * * * *
3029890 GTAATTTTACCTTTCGAGCGTCTTTC-GATCATTGTACCCTTCGAGGGTATTTC-
1 ATCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTACCCTTCGAGGGTATTTCG
3029943 AGTCATTTTACCCTTC-AGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT-G
1 A-TCATTTTACCCTTCGA-GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* *
3029997 GTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTA-CCTTCGAGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* * * *
3030050 ATCATTTTACCTTTCAAGAGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* * * * *
3030104 GTCATTTTACCCTTCGAGGGTATTTCTGTCATGTTGCCCTTTGAGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
3030158 ATCATTTT
1 ATCATTTT
3030166 CCCATGAATC
Statistics
Matches: 553, Mismatches: 109, Indels: 99
0.73 0.14 0.13
Matches are distributed among these distances:
46 2 0.00
47 3 0.01
48 3 0.01
49 2 0.00
50 12 0.02
51 5 0.01
52 22 0.04
53 175 0.32
54 287 0.52
55 3 0.01
56 1 0.00
57 3 0.01
58 8 0.01
59 2 0.00
60 1 0.00
62 9 0.02
63 4 0.01
64 3 0.01
65 1 0.00
66 2 0.00
67 4 0.01
68 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (54 bp):
ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
Found at i:3029559 original size:81 final size:80
Alignment explanation
Indices: 3029401--3030165 Score: 467
Period size: 81 Copynumber: 9.4 Consensus size: 80
3029391 GAGTATGATA
3029401 ATCATTTTACCCTAT-GAGGGTATTTCAGTCATTTTACCCTTCG-GGGTATTT-AGATCATTTTA
1 ATCATTTTACCCT-TCGAGGGTATTTCA-TCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTA
*
3029463 CCCTTCGAGGTTATTTCG
63 CCCTTCGAGGGTATTTCG
* * *
3029481 ATAATTTTACCCTTCGAGGGTCTTTCGATCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTATTTC-ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
3029546 CTTCGAGGGTATTTCG
65 CTTCGAGGGTATTTCG
* * * *
3029562 ATCATTTTACCCTTCAAGAGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTATTTCA-TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
*
3029627 ATTCGAGGGTATTTCG
65 CTTCGAGGGTATTTCG
* * * * ** *
3029643 ATAATTTTGCCCTTTGAGGGTATTTCAATCA-TTTACCCATGAATCACAAGTTGG-GCTT--GCC
1 ATCATTTTACCCTTCGAGGGTATTTC-ATCATTTTACCC-T---T--CGAG--GGTATTTCAGTC
* * * ** * * * *
3029704 ACTTGAGCGATCATACGTGTATGTAG
57 ATTTTACCCTTC-GA-GGGTATTTCG
* ** * ** ** *** *** *
3029730 -T-ATGTCATACTCAGT-AACAGTCATGTAAATAACATAGAACAAATC---GGTCA-TACAGTCA
1 ATCAT-T-TTAC-CCTTCGAGGGT-AT-TTCAT--CATTTTACCCTTCGAGGGT-ATTTCAGTCA
* * * * ** *
3029788 TTTCA-ACTCCTAGGAGTATAACA
58 TTTTACCCTTCGAGG-GTATTTCG
** *
3029811 ATCA-TTTACCCTAAGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT-TGATCATTTTAC
1 ATCATTTTACCCTTCGAGGGTATTTCA-TCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTAC
*
3029874 CCTTCGAGGTTATTT-G
64 CCTTCGAGGGTATTTCG
* * * * * *
3029890 GTAATTTTACCTTTCGAGCGTCTTTCGATCATTGTACCCTTCGAGGGTATTTCAGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTATTTC-ATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
3029955 CTTC-AGGGGTATTTC-
65 CTTCGA-GGGTATTTCG
** *
3029970 AGTCATTTTACCCTTCGAGGGTATTTGGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTA-C
1 A-TCATTTTACCCTTCGAGGGTATTTCATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
3030034 CTTCGAGGGTATTTCG
65 CTTCGAGGGTATTTCG
* * * * *
3030050 ATCATTTTACCTTTCAAGAGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTATTTCA-TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
3030115 CTTCGAGGGTATTTCTG
65 CTTCGAGGGTATTTC-G
* * *
3030132 -TCATGTTGCCCTTTGAGGGTATTTCGATCATTTT
1 ATCATTTTACCCTTCGAGGGTATTTC-ATCATTTT
3030166 CCCATGAATC
Statistics
Matches: 516, Mismatches: 118, Indels: 101
0.70 0.16 0.14
Matches are distributed among these distances:
77 7 0.01
78 2 0.00
79 45 0.09
80 194 0.38
81 208 0.40
82 7 0.01
83 7 0.01
84 1 0.00
85 12 0.02
86 5 0.01
87 15 0.03
88 8 0.02
89 1 0.00
90 2 0.00
91 2 0.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (80 bp):
ATCATTTTACCCTTCGAGGGTATTTCATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCC
TTCGAGGGTATTTCG
Found at i:3029855 original size:27 final size:27
Alignment explanation
Indices: 3029815--3030165 Score: 412
Period size: 27 Copynumber: 13.1 Consensus size: 27
3029805 ATAACAATCA
**
3029815 TTTACCCTAAGAGGGTATTTCAGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
*
3029842 TTTACCCTTCGAGGGTATTT-TGATCAT
1 TTTACCCTTCGAGGGTATTTCAG-TCAT
* * *
3029869 TTTACCCTTCGAGGTTATTT-GGTAAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
* * *
3029895 TTTACCTTTCGAGCGTCTTTC-GATCAT
1 TTTACCCTTCGAGGGTATTTCAG-TCAT
*
3029922 TGTACCCTTCGAGGGTATTTCAGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
3029949 TTTACCCTTC-AGGGGTATTTCAGTCAT
1 TTTACCCTTCGA-GGGTATTTCAGTCAT
*
3029976 TTTACCCTTCGAGGGTATTT-GGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
*
3030002 TTTACCCTTTGAGGGTATTTCAGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
3030029 TTTA-CCTTCGAGGGTATTTC-GATCAT
1 TTTACCCTTCGAGGGTATTTCAG-TCAT
* * *
3030055 TTTACCTTTCAAGAGTATTTCAGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
* *
3030082 TTTACCCTTCGGGGGTATTTCGGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
*
3030109 TTTACCCTTCGAGGGTATTTCTGTCAT
1 TTTACCCTTCGAGGGTATTTCAGTCAT
* * *
3030136 GTTGCCCTTTGAGGGTATTTC-GATCAT
1 TTTACCCTTCGAGGGTATTTCAG-TCAT
3030163 TTT
1 TTT
3030166 CCCATGAATC
Statistics
Matches: 279, Mismatches: 34, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.00
26 70 0.25
27 205 0.73
28 3 0.01
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.43
Consensus pattern (27 bp):
TTTACCCTTCGAGGGTATTTCAGTCAT
Found at i:3029935 original size:80 final size:81
Alignment explanation
Indices: 3029829--3030165 Score: 402
Period size: 80 Copynumber: 4.2 Consensus size: 81
3029819 CCCTAAGAGG
* *
3029829 GTATTTC-AGTCATTTTACCCTTCGAGGGTATTT-TGATCATTTTACCCTTCGAGGTTATTT-GG
1 GTATTTCGA-TCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTACCCTTCGAGGGTATTTCGG
* *
3029891 TAATTTTACCTTTCGAGC
64 TCATTTTACCTTTCGAGA
* * *
3029909 GTCTTTCGATCATTGTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTC-AGGGGTATTTCAGT
1 GTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGA-GGGTATTTCGGT
* *
3029973 CATTTTACCCTTCGAGG
65 CATTTTACCTTTCGAGA
* * *
3029990 GTATTT-GGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTA-CCTTCGAGGGTATTTCGATC
1 GTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGGTC
*
3030053 ATTTTACCTTTCAAGA
66 ATTTTACCTTTCGAGA
* * *
3030069 GTATTTC-AGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCTGT
1 GTATTTCGA-TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGGT
** *
3030133 CATGTTGCCCTTT-GAGG
65 CAT-TTTACCTTTCGAGA
3030150 GTATTTCGATCATTTT
1 GTATTTCGATCATTTT
3030166 CCCATGAATC
Statistics
Matches: 220, Mismatches: 27, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
79 36 0.16
80 117 0.53
81 59 0.27
82 8 0.04
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.43
Consensus pattern (81 bp):
GTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGGTC
ATTTTACCTTTCGAGA
Found at i:3030004 original size:107 final size:107
Alignment explanation
Indices: 3029811--3030165 Score: 424
Period size: 107 Copynumber: 3.3 Consensus size: 107
3029801 GAGTATAACA
** *
3029811 ATCATT-TACCCTAAGAGGGTATTTC-AGTCATTTTACCCTTC-GAGGGTATTT-TGATCATTTT
1 ATCATTGTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTCAG-GGGTATTTCAG-TCATTTT
* * * *
3029872 ACCCTTCGAGGTTATTTGGTAATTTTACCTTTCGAGCGTCTTTCG
63 ACCCTTCGAGGGTATTTGGTCATTTTACCTTTCGAGGGTATTTCG
3029917 ATCATTGTACCCTTCGAGGGTATTTC-AGTCATTTTACCCTTCAGGGGTATTTCAGTCATTTTAC
1 ATCATTGTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTCAGGGGTATTTCAGTCATTTTAC
3029981 CCTTCGAGGGTATTTGGTCATTTTACCCTTT-GAGGGTATTTC-
65 CCTTCGAGGGTATTTGGTCATTTTA-CCTTTCGAGGGTATTTCG
* * * *
3030023 AGTCATTTTA-CCTTCGAGGGTATTTCGATCATTTTACCTTTCAAGAGTATTTCAGTCATTTTAC
1 A-TCATTGTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCAGTCATTTTAC
* *
3030087 CCTTCGGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCTG
65 CCTTCGAGGGTATTT-GGTCATTTTACCTTTCGAGGGTATTTC-G
* *
3030132 -TCA-TGTTGCCCTTTGAGGGTATTTCGATCATTTT
1 ATCATTG-TACCCTTCGAGGGTATTTCGATCATTTT
3030166 CCCATGAATC
Statistics
Matches: 221, Mismatches: 16, Indels: 22
0.85 0.06 0.08
Matches are distributed among these distances:
106 75 0.34
107 115 0.52
108 31 0.14
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.43
Consensus pattern (107 bp):
ATCATTGTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCAGTCATTTTACC
CTTCGAGGGTATTTGGTCATTTTACCTTTCGAGGGTATTTCG
Found at i:3045107 original size:13 final size:13
Alignment explanation
Indices: 3045089--3045122 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
3045079 CATGCATAAA
*
3045089 TGTTAGGATAGCG
1 TGTTAGGATAACG
3045102 TGTTAGGATAACG
1 TGTTAGGATAACG
*
3045115 TGTGAGGA
1 TGTTAGGA
3045123 ATGAAACTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.38, T:0.29
Consensus pattern (13 bp):
TGTTAGGATAACG
Found at i:3049333 original size:22 final size:23
Alignment explanation
Indices: 3049303--3049367 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
3049293 TGGTACTCTG
3049303 TTAGCCTTTGTGGCGTATTC-TA
1 TTAGCCTTTGTGGCGTATTCATA
* *
3049325 TTAGGCTTTGTGGCATATTTCATA
1 TTAGCCTTTGTGGCGTA-TTCATA
* *
3049349 TGTTGTCTTTGTGGCGTAT
1 T-TAGCCTTTGTGGCGTAT
3049368 CTTTGTCTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 15 0.43
23 3 0.09
24 4 0.11
25 13 0.37
ACGTcount: A:0.14, C:0.14, G:0.25, T:0.48
Consensus pattern (23 bp):
TTAGCCTTTGTGGCGTATTCATA
Found at i:3065753 original size:2 final size:2
Alignment explanation
Indices: 3065746--3065820 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
3065736 CTTTTAACCC
3065746 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
3065788 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
3065821 ACTAGGTTTA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Done.