Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1402

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1841
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.29

Warning! 237 characters in sequence are not A, C, G, or T


Found at i:1122 original size:5 final size:6

Alignment explanation


    Indices: 1089--1146  Score: 53
    Period size: 6  Copynumber: 9.0  Consensus size: 6

       1079 TTTTTTTGAA

                     * *                             *                 
       1089 TTTTCT TTCTGT TTTTCAT TTTTCT TTTTCT TTTGTAT TTTTGCT CTTTTCT
          1 TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTT-TCT TTTT-CT -TTTTCT

                  
       1141 TTTTCT
          1 TTTTCT

       1147 CTCATTTGAT


Statistics
Matches: 42,  Mismatches: 6, Indels: 8
        0.75            0.11        0.14

Matches are distributed among these distances:
   6   24  0.57
   7   14  0.33
   8    4  0.10

ACGTcount: A:0.03, C:0.16, G:0.05, T:0.76


Consensus pattern (6 bp):   
TTTTCT
Done.