Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3270

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 465

Length: 775
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39


Found at i:441 original size:12 final size:12

Alignment explanation


    Indices: 424--463  Score: 53
    Period size: 12  Copynumber: 3.3  Consensus size: 12

        414 TTTTGAACCT

                      * 
        424 CTGCTTCTATTG
          1 CTGCTTCTATCG

                    *   
        436 CTGCTTCTCTCG
          1 CTGCTTCTATCG

                    *   
        448 CTGCTTCTCTCG
          1 CTGCTTCTATCG

                
        460 CTGC
          1 CTGC

        464 GGCCTCTGCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   26  1.00

ACGTcount: A:0.03, C:0.38, G:0.17, T:0.42


Consensus pattern (12 bp):   
CTGCTTCTATCG

Found at i:474 original size:21 final size:21

Alignment explanation


    Indices: 448--516  Score: 84
    Period size: 21  Copynumber: 3.3  Consensus size: 21

        438 GCTTCTCTCG

                            *    
        448 CTGCTTCTCTCGCTGCGGCCT
          1 CTGCTTCTCTCGCTGCAGCCT

                  *        *     
        469 CTGCTTGTCTCGCTGTAGCCT
          1 CTGCTTCTCTCGCTGCAGCCT

                   *        * *  
        490 CTGCTTCCCTCGCTGCCGTCT
          1 CTGCTTCTCTCGCTGCAGCCT

                  
        511 CTGCTT
          1 CTGCTT

        517 TAAGTTGCTG


Statistics
Matches: 40,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   40  1.00

ACGTcount: A:0.01, C:0.41, G:0.22, T:0.36


Consensus pattern (21 bp):   
CTGCTTCTCTCGCTGCAGCCT
Done.