Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold459
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 208207
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.34
Warning! 4806 characters in sequence are not A, C, G, or T
Found at i:6890 original size:3 final size:3
Alignment explanation
Indices: 6882--6919 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
6872 AATTTAGTCA
6882 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6920 AATAACTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7199 original size:18 final size:18
Alignment explanation
Indices: 7151--7199 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7141 CATATCTTTG
*
7151 ATTTATATATATATACTT
1 ATTTATATATATATACTA
* *
7169 ATTTTTATCTATATTA-TA
1 ATTTATATATATA-TACTA
7187 ATTTATATATATA
1 ATTTATATATATA
7200 CATGTATTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATATATATATACTA
Found at i:7258 original size:18 final size:18
Alignment explanation
Indices: 7235--7270 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7225 TTTCTAAATT
*
7235 TTTATAAGTATATACATA
1 TTTATAAGTACATACATA
*
7253 TTTATATGTACATACATA
1 TTTATAAGTACATACATA
7271 CTTACATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (18 bp):
TTTATAAGTACATACATA
Found at i:10711 original size:17 final size:17
Alignment explanation
Indices: 10689--10727 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
10679 CTAATCTATA
*
10689 TGCAATAGGGACTAAAT
1 TGCAATAAGGACTAAAT
10706 TGCAATAAGGACTAAAT
1 TGCAATAAGGACTAAAT
10723 TGCAA
1 TGCAA
10728 AAAGTGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (17 bp):
TGCAATAAGGACTAAAT
Found at i:11173 original size:50 final size:50
Alignment explanation
Indices: 11085--11191 Score: 121
Period size: 50 Copynumber: 2.2 Consensus size: 50
11075 TATATAGACC
* *
11085 ATTGAATTTAGTTAAAGTATGAATGGTATATAAGTATATACATAAATGTT
1 ATTGAATTTAGTTAAAGTATGAAGGGTATATAAGTATATACATAAATGGT
* * * *
11135 ATTGAATTTAGTTGAAGTAT-AAGGGTTTCATATA-TATATGCATACATGGT
1 ATTGAATTTAGTTAAAGTATGAAGGGTAT-ATA-AGTATATACATAAATGGT
11185 -TTGAATT
1 ATTGAATT
11192 CACATATGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
49 13 0.27
50 35 0.71
51 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (50 bp):
ATTGAATTTAGTTAAAGTATGAAGGGTATATAAGTATATACATAAATGGT
Found at i:12220 original size:49 final size:49
Alignment explanation
Indices: 12166--12260 Score: 172
Period size: 49 Copynumber: 1.9 Consensus size: 49
12156 AATTGTTGGA
12166 TATATATACATATATGTATGCATTCGGCATATGTGGATTATAAGTAAAG
1 TATATATACATATATGTATGCATTCGGCATATGTGGATTATAAGTAAAG
* *
12215 TATATATATATATATGTATGCATTTGGCATATGTGGATTATAAGTA
1 TATATATACATATATGTATGCATTCGGCATATGTGGATTATAAGTA
12261 TATGTATGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (49 bp):
TATATATACATATATGTATGCATTCGGCATATGTGGATTATAAGTAAAG
Found at i:12480 original size:18 final size:18
Alignment explanation
Indices: 12457--12494 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
12447 TTTATATGAG
12457 TTAGTTAAACATACATTC
1 TTAGTTAAACATACATTC
12475 TTAGTTAAACATACATTC
1 TTAGTTAAACATACATTC
12493 TT
1 TT
12495 TTAGATATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (18 bp):
TTAGTTAAACATACATTC
Found at i:13237 original size:44 final size:44
Alignment explanation
Indices: 13161--13284 Score: 119
Period size: 45 Copynumber: 2.8 Consensus size: 44
13151 CAATTTAGTT
* *
13161 CCATACTATCTTTCAATTATAGTCTTAT-TCA-TTCCAGTAAAATG
1 CCATAGTATCTTTCAA-TATGGTCTT-TCTCATTTCCAGTAAAATG
** *
13205 CCATAGTATCTTTCAACTATGGTCTTTCTCATTTCGGGTAGAATG
1 CCATAGTATCTTTCAA-TATGGTCTTTCTCATTTCCAGTAAAATG
* *
13250 CCA-GGATATCTTTCAATCATGGTCTTTCTCGTTTC
1 CCATAG-TATCTTTCAAT-ATGGTCTTTCTCATTTC
13285 TCAATCCAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 28 0.41
45 39 0.57
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (44 bp):
CCATAGTATCTTTCAATATGGTCTTTCTCATTTCCAGTAAAATG
Found at i:17163 original size:34 final size:33
Alignment explanation
Indices: 17068--17202 Score: 114
Period size: 34 Copynumber: 4.0 Consensus size: 33
17058 ATACAACATG
* * * *
17068 ACATGATTATAATAGATCAATACGATCGCAATA
1 ACATGCTTATAATAGATCAATAAGGTAGCAATA
* * *
17101 ACATTCTTATAGAAAG-TCGATATA-GTAGCATATA
1 ACATGCTTATA-ATAGATCAATA-AGGTAGCA-ATA
*
17135 TCATGCTTATAATAGATCAATAAGGTAGCAATTA
1 ACATGCTTATAATAGATCAATAAGGTAGCAA-TA
* *
17169 ACATGCTTATAATAGATTATTATA-GTAGCAATA
1 ACATGCTTATAATAGATCAATA-AGGTAGCAATA
17202 A
1 A
17203 ACTTCCTTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
33 26 0.32
34 54 0.67
35 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (33 bp):
ACATGCTTATAATAGATCAATAAGGTAGCAATA
Found at i:20976 original size:16 final size:16
Alignment explanation
Indices: 20955--20986 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20945 TTGATAAGGT
20955 TCTCATAAAAATAGTG
1 TCTCATAAAAATAGTG
*
20971 TCTCATCAAAATAGTG
1 TCTCATAAAAATAGTG
20987 GTTCGTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (16 bp):
TCTCATAAAAATAGTG
Found at i:24712 original size:18 final size:18
Alignment explanation
Indices: 24654--24694 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 18
24644 ATTTTTTTAT
24654 TTTTTTATTTTTAAAATA
1 TTTTTTATTTTTAAAATA
24672 CTTTTTTATTTTTAAAATA
1 -TTTTTTATTTTTAAAATA
24691 TTTT
1 TTTT
24695 AAAATACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTATTTTTAAAATA
Found at i:24723 original size:29 final size:29
Alignment explanation
Indices: 24646--24723 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
24636 TATAATAAAT
24646 TTTTTTATTTTTTT--ATTTTTAAAATAC
1 TTTTTTATTTTTTTAAATTTTTAAAATAC
*
24673 TTTTTTA-TTTTTAAAATATTTTAAAATAC
1 TTTTTTATTTTTTTAAAT-TTTTAAAATAC
24702 TTTTTTATTTTTTTAAATTTTT
1 TTTTTTATTTTTTTAAATTTTT
24724 TTGGTGTTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.11
27 7 0.16
28 2 0.04
29 22 0.49
30 9 0.20
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (29 bp):
TTTTTTATTTTTTTAAATTTTTAAAATAC
Found at i:26036 original size:3 final size:3
Alignment explanation
Indices: 26028--26074 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
26018 TAAACAAAAA
26028 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26075 CTCTTGCTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:28161 original size:17 final size:17
Alignment explanation
Indices: 28136--28180 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
28126 ATAATAAAAT
28136 ATATTTTTATTATTTTA
1 ATATTTTTATTATTTTA
* *
28153 ATTTTTTTATAATTTTA
1 ATATTTTTATTATTTTA
28170 ATATTTTTATT
1 ATATTTTTATT
28181 TTTCATCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATATTTTTATTATTTTA
Found at i:28163 original size:25 final size:25
Alignment explanation
Indices: 28135--28183 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
28125 TATAATAAAA
* *
28135 TATATTTTTATTATTTTAATTTTTT
1 TATAATTTTAATATTTTAATTTTTT
*
28160 TATAATTTTAATATTTTTATTTTT
1 TATAATTTTAATATTTTAATTTTT
28184 CATCTATATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (25 bp):
TATAATTTTAATATTTTAATTTTTT
Found at i:35122 original size:16 final size:15
Alignment explanation
Indices: 35087--35120 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
35077 CCCAAATCAG
* *
35087 AAAACAATAACAGAA
1 AAAACAACAAAAGAA
35102 AAAACAACAAAAGAA
1 AAAACAACAAAAGAA
35117 AAAA
1 AAAA
35121 ACCTAGCCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.79, C:0.12, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAACAACAAAAGAA
Found at i:35978 original size:25 final size:27
Alignment explanation
Indices: 35931--35990 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
35921 GATATTATTG
* *
35931 TCTTTATTTCATTTGTGTATTTTTTTCT
1 TCTTT-TTTCATTTGTATATTTTTTTAT
35959 TCTTTTTTCATTT-TAT-TTTTTTTAT
1 TCTTTTTTCATTTGTATATTTTTTTAT
35984 T-TTTTTT
1 TCTTTTTT
35991 ATGTCTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 6 0.20
25 9 0.30
26 2 0.07
27 8 0.27
28 5 0.17
ACGTcount: A:0.10, C:0.08, G:0.03, T:0.78
Consensus pattern (27 bp):
TCTTTTTTCATTTGTATATTTTTTTAT
Found at i:36186 original size:22 final size:22
Alignment explanation
Indices: 36161--36217 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
36151 TACATATATA
36161 TATATATATATATATACCTTAT
1 TATATATATATATATACCTTAT
* * * *
36183 TATAAATATCTTTATATCTTAT
1 TATATATATATATATACCTTAT
*
36205 TATGTATATATAT
1 TATATATATATAT
36218 CTATATCTCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TATATATATATATATACCTTAT
Found at i:36212 original size:26 final size:25
Alignment explanation
Indices: 36179--36228 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
36169 TATATATACC
*
36179 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
36204 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
36229 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:39249 original size:2 final size:2
Alignment explanation
Indices: 39242--39277 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
39232 ATCAAAATCT
39242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
39278 CTTTTTTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:40094 original size:28 final size:26
Alignment explanation
Indices: 40054--40129 Score: 75
Period size: 28 Copynumber: 2.8 Consensus size: 26
40044 ATTTTTATTA
40054 TATATTTTTTAAATTTTTATAAGAATTT
1 TATA-TTTTTAAATTTTTATAAG-ATTT
*
40082 TATATTTTCTAAAGTTTTAT--GATTT
1 TATATTTT-TAAATTTTTATAAGATTT
*
40107 TTTATTTTTAAATACTTTTATAA
1 TATATTTTTAAAT--TTTTATAA
40130 TTTTTAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 4 0.10
25 11 0.28
26 7 0.17
27 4 0.10
28 14 0.35
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.61
Consensus pattern (26 bp):
TATATTTTTAAATTTTTATAAGATTT
Found at i:41123 original size:8 final size:8
Alignment explanation
Indices: 41110--41139 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
41100 TTAAATGATT
41110 TTTTTTAA
1 TTTTTTAA
41118 TTTTTTAA
1 TTTTTTAA
41126 TTTTTTAA
1 TTTTTTAA
41134 TTTTTT
1 TTTTTT
41140 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTAA
Found at i:41161 original size:20 final size:18
Alignment explanation
Indices: 41137--41183 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
41127 TTTTTAATTT
41137 TTTTTTTAAATTTTAATAA
1 TTTTTTTAAATTTTAA-AA
**
41156 TGTTTTACAAATTTTAAAA
1 T-TTTTTTAAATTTTAAAA
41175 TTTTTTTAA
1 TTTTTTTAA
41184 TTTAGAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 6 0.26
19 4 0.17
20 13 0.57
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTTTAAATTTTAAAA
Found at i:42990 original size:3 final size:3
Alignment explanation
Indices: 42982--43026 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
42972 ATTGTTTCTT
42982 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
43027 AATACCTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:44335 original size:20 final size:20
Alignment explanation
Indices: 44306--44343 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
44296 TTATCCATGA
*
44306 TCTGTTAGATACTAAAATGG
1 TCTGTCAGATACTAAAATGG
44326 TCTGTCAGATACTAAAAT
1 TCTGTCAGATACTAAAAT
44344 ACTAAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (20 bp):
TCTGTCAGATACTAAAATGG
Found at i:47292 original size:10 final size:10
Alignment explanation
Indices: 47275--47311 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
47265 AATGTTATAT
47275 TTTA-AAAAA
1 TTTATAAAAA
47284 TTTATAAAAA
1 TTTATAAAAA
47294 TTT-TAAAAA
1 TTTATAAAAA
*
47303 ATTATAAAA
1 TTTATAAAA
47312 TAATAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 12 0.48
10 13 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:47298 original size:20 final size:19
Alignment explanation
Indices: 47273--47311 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
47263 CAAATGTTAT
47273 ATTTTAAAAAATTTATAAAA
1 ATTTTAAAAAA-TTATAAAA
47293 ATTTTAAAAAATTATAAAA
1 ATTTTAAAAAATTATAAAA
47312 TAATAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTTAAAAAATTATAAAA
Found at i:48981 original size:17 final size:17
Alignment explanation
Indices: 48943--48982 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
48933 TTGTTAGATC
48943 TAATAAATTAAAGTGAA
1 TAATAAATTAAAGTGAA
* * *
48960 CAATAAATTAATGTGGA
1 TAATAAATTAAAGTGAA
48977 TAATAA
1 TAATAA
48983 TATTTATATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (17 bp):
TAATAAATTAAAGTGAA
Found at i:49709 original size:11 final size:11
Alignment explanation
Indices: 49693--49742 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
49683 CTGCCCGAAT
49693 TATATATTAAA
1 TATATATTAAA
**
49704 TATATATT-TT
1 TATATATTAAA
* *
49714 TAT-TTTTAAT
1 TATATATTAAA
49724 TATATATTAAA
1 TATATATTAAA
49735 TATATATT
1 TATATATT
49743 TTTATTTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
9 3 0.10
10 7 0.23
11 21 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TATATATTAAA
Found at i:49725 original size:24 final size:25
Alignment explanation
Indices: 49714--49761 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
49704 TATATATTTT
*
49714 TATTTTTAATTATATATTAAATATA
1 TATTTTTAATTATATATCAAATATA
* *
49739 TATTTTTATTTTTA-ATCAAATAT
1 TATTTTTAATTATATATCAAATAT
49762 GGGCCGGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTTTTAATTATATATCAAATATA
Found at i:49728 original size:31 final size:31
Alignment explanation
Indices: 49690--49754 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
49680 GCCCTGCCCG
49690 AATTATATATTAAATATATATTTTTATTTTT
1 AATTATATATTAAATATATATTTTTATTTTT
49721 AATTATATATTAAATATATATTTTTATTTTT
1 AATTATATATTAAATATATATTTTTATTTTT
49752 AAT
1 AAT
49755 CAAATATGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (31 bp):
AATTATATATTAAATATATATTTTTATTTTT
Found at i:55204 original size:8 final size:8
Alignment explanation
Indices: 55191--55239 Score: 73
Period size: 8 Copynumber: 6.1 Consensus size: 8
55181 AGTTCAGATT
55191 AAAACAAA
1 AAAACAAA
55199 AAAACAAA
1 AAAACAAA
55207 AAAACAAA
1 AAAACAAA
55215 AAAACAAA
1 AAAACAAA
55223 AACAA-AAA
1 AA-AACAAA
*
55231 AAAATAAA
1 AAAACAAA
55239 A
1 A
55240 GTGAAAGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
7 2 0.05
8 35 0.90
9 2 0.05
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (8 bp):
AAAACAAA
Found at i:61167 original size:19 final size:19
Alignment explanation
Indices: 61142--61414 Score: 478
Period size: 19 Copynumber: 14.3 Consensus size: 19
61132 AATTTTTGAG
61142 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
61161 CATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
61180 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61199 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
61220 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
61237 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61256 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61275 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61294 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61313 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61332 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61351 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61370 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
61391 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
61410 GATAT
1 GATAT
61415 ATNNNNNNNN
Statistics
Matches: 244, Mismatches: 4, Indels: 12
0.94 0.02 0.05
Matches are distributed among these distances:
17 17 0.07
19 189 0.77
21 38 0.16
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:76326 original size:13 final size:13
Alignment explanation
Indices: 76308--76333 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76298 TTTATTTTTA
76308 ATTAAATATATAT
1 ATTAAATATATAT
76321 ATTAAATATATAT
1 ATTAAATATATAT
76334 TTTTTGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTAAATATATAT
Found at i:76708 original size:22 final size:22
Alignment explanation
Indices: 76680--76731 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
76670 GCTCAAGATT
76680 TTCCTTTAGGCGAAGACCTATC
1 TTCCTTTAGGCGAAGACCTATC
76702 TTCCTTTAGGCGAAGACCTATC
1 TTCCTTTAGGCGAAGACCTATC
76724 TTCCTTTA
1 TTCCTTTA
76732 CAAAACATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (22 bp):
TTCCTTTAGGCGAAGACCTATC
Found at i:86150 original size:53 final size:53
Alignment explanation
Indices: 86070--86179 Score: 220
Period size: 53 Copynumber: 2.1 Consensus size: 53
86060 AAGTTCAGAC
86070 AATCCCAATTCCATAGCCATTAATCCTAACTCTTGTAAGATCGCAGAAGCTTT
1 AATCCCAATTCCATAGCCATTAATCCTAACTCTTGTAAGATCGCAGAAGCTTT
86123 AATCCCAATTCCATAGCCATTAATCCTAACTCTTGTAAGATCGCAGAAGCTTT
1 AATCCCAATTCCATAGCCATTAATCCTAACTCTTGTAAGATCGCAGAAGCTTT
86176 AATC
1 AATC
86180 TAAGCAAAAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (53 bp):
AATCCCAATTCCATAGCCATTAATCCTAACTCTTGTAAGATCGCAGAAGCTTT
Found at i:86766 original size:16 final size:16
Alignment explanation
Indices: 86745--86775 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86735 GTTTAGTTCG
86745 CTGTAATAGAATAGAA
1 CTGTAATAGAATAGAA
*
86761 CTGTAATGGAATAGA
1 CTGTAATAGAATAGA
86776 GGCGTAATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (16 bp):
CTGTAATAGAATAGAA
Found at i:103348 original size:16 final size:16
Alignment explanation
Indices: 103327--103359 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
103317 TTTGAAAGAG
103327 TTTCAAATATATATGC
1 TTTCAAATATATATGC
*
103343 TTTCAAATTTATATGC
1 TTTCAAATATATATGC
103359 T
1 T
103360 CTAAAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGC
Found at i:104174 original size:19 final size:21
Alignment explanation
Indices: 104132--104174 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
104122 TTCAGACCTT
* *
104132 ATATAAAAAATTAAAAGACTA
1 ATATAAAAAATTAAAACACGA
104153 ATAT-AAAAATT-AAACACGA
1 ATATAAAAAATTAAAACACGA
104172 ATA
1 ATA
104175 ATAGAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 7 0.35
21 4 0.20
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (21 bp):
ATATAAAAAATTAAAACACGA
Found at i:106578 original size:105 final size:104
Alignment explanation
Indices: 106447--106656 Score: 411
Period size: 105 Copynumber: 2.0 Consensus size: 104
106437 ACATGCTTCC
106447 AATATATGCATGGGATGCTATGATAATTTTATAATATTCACATTCTTTCACAAGAATGAATCAAT
1 AATATATGCATGGGATGCTATGATAATTTTATAATATTCACATTCTTTCACAAGAATGAATCAAT
106512 CATAAAAAAACAATTTGGATTCTCCAGAGTTTTTCTTTTA
66 CA-AAAAAAACAATTTGGATTCTCCAGAGTTTTTCTTTTA
106552 AATATATGCATGGGATGCTATGATAATTTTATAATATTCACATTCTTTCACAAGAATGAATCAAT
1 AATATATGCATGGGATGCTATGATAATTTTATAATATTCACATTCTTTCACAAGAATGAATCAAT
106617 CAAAAAAAACAATTTGGATTCTCCAGAGTTTTTCTTTTA
66 CAAAAAAAACAATTTGGATTCTCCAGAGTTTTTCTTTTA
106656 A
1 A
106657 GAAAAAAACT
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
104 38 0.36
105 67 0.64
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (104 bp):
AATATATGCATGGGATGCTATGATAATTTTATAATATTCACATTCTTTCACAAGAATGAATCAAT
CAAAAAAAACAATTTGGATTCTCCAGAGTTTTTCTTTTA
Found at i:108663 original size:2 final size:2
Alignment explanation
Indices: 108656--108681 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
108646 ATTTTCTTTT
108656 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
108682 CTTTATAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:108813 original size:30 final size:30
Alignment explanation
Indices: 108741--108800 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
108731 AGATGCACAC
* *
108741 ATATTTTACAA-TTT-ATATATACATATAT
1 ATATTTCACAATTTTAAAATATACATATAT
108769 ATATTTCACAATTTTAAAATATACATATAT
1 ATATTTCACAATTTTAAAATATACATATAT
108799 AT
1 AT
108801 CTCTTTACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 10 0.36
29 3 0.11
30 15 0.54
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (30 bp):
ATATTTCACAATTTTAAAATATACATATAT
Found at i:116525 original size:22 final size:20
Alignment explanation
Indices: 116485--116524 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
116475 CCTGCATACG
116485 TTTTTATAATATACATATAT
1 TTTTTATAATATACATATAT
* *
116505 TTTTTATAATTTATATATAT
1 TTTTTATAATATACATATAT
116525 ACATACTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTATAATATACATATAT
Found at i:118822 original size:18 final size:18
Alignment explanation
Indices: 118799--118837 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
118789 TACTTAACTT
* *
118799 GAAAAAAAGGAACGAAAA
1 GAAAAAAAGAAAAGAAAA
118817 GAAAAAAAGAAAAGAAAA
1 GAAAAAAAGAAAAGAAAA
118835 GAA
1 GAA
118838 GAACGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.77, C:0.03, G:0.21, T:0.00
Consensus pattern (18 bp):
GAAAAAAAGAAAAGAAAA
Found at i:118828 original size:13 final size:13
Alignment explanation
Indices: 118812--118854 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
118802 AAAAAGGAAC
118812 GAAAAGAAAAAAA
1 GAAAAGAAAAAAA
*
118825 GAAAAGAAAAGAA
1 GAAAAGAAAAAAA
* *
118838 G-AACGAAAAAAG
1 GAAAAGAAAAAAA
118850 GAAAA
1 GAAAA
118855 TGAGAGGCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (13 bp):
GAAAAGAAAAAAA
Found at i:119947 original size:88 final size:89
Alignment explanation
Indices: 119760--119985 Score: 294
Period size: 88 Copynumber: 2.6 Consensus size: 89
119750 CATCATATAA
* * * *
119760 AGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGACAACAGATCTTGTCTTTCTATATCG
1 AGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTTCTATATAG
* *
119825 ACAGCAAAGTAGATTGAAGACACC
66 ACAGCAAAGCAGATCGAAGACACC
* * * *
119849 AGCCTGACCTCCCTGAGTTTGCAGTGAAGCAAACTGAAGATAGCATAT-TTGTCTTTCTGTATTA
1 AGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTTCTATA-TA
* *
119913 G-CAGCAAAGCAGGTCGAAGACACT
65 GACAGCAAAGCAGATCGAAGACACC
* * *
119937 AGCCTAACCTCCCTGAGTTTACAGCGAAACAGACTGAAGATAGCAGATC
1 AGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATC
119986 GAAGACACCA
Statistics
Matches: 117, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
88 73 0.62
89 44 0.38
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (89 bp):
AGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTTCTATATAG
ACAGCAAAGCAGATCGAAGACACC
Found at i:120020 original size:58 final size:58
Alignment explanation
Indices: 119920--120043 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 58
119910 TTAGCAGCAA
* *
119920 AGCAGGTCGAAGACACTAGCCTAACCTCCCTGAGTTTACAGCGAAACAGACTGAAGAT
1 AGCAGATCGAAGACACCAGCCTAACCTCCCTGAGTTTACAGCGAAACAGACTGAAGAT
* * * * * * **
119978 AGCAGATCGAAGACACCAGCTTGACCTCCTTGTGTTTGCAGCGGAGTAGACTGAAGAT
1 AGCAGATCGAAGACACCAGCCTAACCTCCCTGAGTTTACAGCGAAACAGACTGAAGAT
*
120036 AGAAGATC
1 AGCAGATC
120044 TTATCTTCTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.19
Consensus pattern (58 bp):
AGCAGATCGAAGACACCAGCCTAACCTCCCTGAGTTTACAGCGAAACAGACTGAAGAT
Found at i:120126 original size:147 final size:146
Alignment explanation
Indices: 119835--120132 Score: 332
Period size: 147 Copynumber: 2.0 Consensus size: 146
119825 ACAGCAAAGT
* * * * *
119835 AGATTGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTGAAGCAAACTGAAGATAGCATATTTG
1 AGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAAACTGAAGATAGAAGATTTA
*
119900 TCTTTCTGTATTAGCAGCAAAGCAGGTCGAAGACACTAGCCTAACCTCCCTGAGTTTACAGCGAA
66 TCTTTCTGTATTAGCAGCAAAGCAGATCGAAGACACTAGCCTAACCTCCCTGAGTTTACAGCGAA
*
119965 ACAGACTGAAGATAGC
131 ACAGACTAAAGATAGC
* * * * * *
119981 AGATCGAAGACACCAGCTTGACCTCCTTGTGTTTGCAGCGGAGTAGACTGAAGATAGAAGATCTT
1 AGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAAACTGAAGATAGAAGAT-TT
* * * * ** *
120046 ATC-TTCTTGTATTGGCAGCGAAA-TAGATCGAAGACA-TCAGCTTGACCTCTTTGAGTTTGCAG
65 ATCTTTC-TGTATTAGCAGC-AAAGCAGATCGAAGACACT-AGCCTAACCTCCCTGAGTTTACAG
* * *
120108 TGAAGCATACTAAAGATAGC
127 CGAAACAGACTAAAGATAGC
120128 AGATC
1 AGATC
120133 TTGTCTTCCT
Statistics
Matches: 125, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
146 56 0.45
147 66 0.53
148 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (146 bp):
AGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAAACTGAAGATAGAAGATTTA
TCTTTCTGTATTAGCAGCAAAGCAGATCGAAGACACTAGCCTAACCTCCCTGAGTTTACAGCGAA
ACAGACTAAAGATAGC
Found at i:120132 original size:89 final size:90
Alignment explanation
Indices: 119978--120354 Score: 510
Period size: 89 Copynumber: 4.2 Consensus size: 90
119968 GACTGAAGAT
* * * * * *
119978 AGCAGATCGAAGACACCAGCTTGACCTCCTTGTGTTTGCAGCG-GAGTAGACTGAAGATAGAAGA
1 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTGAGAGCAGACTGAAGATAGCAGA
* *
120042 TCTTATCTTCTTGTATTGGCAGCGA
66 TCTTGTCTTCCTGTATTGGCAGCGA
** * * ** * *
120067 AATAGATCGAAGACATCAGCTTGACCTCTTTGAGTTTGCAGTGA-AGCATACTAAAGATAGCAGA
1 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTGAGAGCAGACTGAAGATAGCAGA
120131 TCTTGTCTTCCTGTATTGGCAGCGA
66 TCTTGTCTTCCTGTATTGGCAGCGA
** *
120156 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCA-ACAGAGCAGACTGAAGATAACAGA
1 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTGAGAGCAGACTGAAGATAGCAGA
* *
120220 TCTTGCCTTCCTGTATTGGTAGCGA
66 TCTTGTCTTCCTGTATTGGCAGCGA
120245 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGT-AGAGCAGACTGAAGATAGCAGA
1 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTGAGAGCAGACTGAAGATAGCAGA
** *
120309 TCTTGTCTTCCTGTACCGGTAGCGA
66 TCTTGTCTTCCTGTATTGGCAGCGA
120334 AGCAGATCGAAGACACCAGCC
1 AGCAGATCGAAGACACCAGCC
120355 AGCTACAACG
Statistics
Matches: 255, Mismatches: 30, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
88 1 0.00
89 254 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (90 bp):
AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTGAGAGCAGACTGAAGATAGCAGA
TCTTGTCTTCCTGTATTGGCAGCGA
Found at i:120301 original size:44 final size:43
Alignment explanation
Indices: 120156--120294 Score: 122
Period size: 44 Copynumber: 3.1 Consensus size: 43
120146 TTGGCAGCGA
*
120156 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAACAG
1 AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGC-AGAG
* * * * * * *
120200 AGCAGA-CTGAAGATAACAGATCTTG-CCTTCCTGTA-TTGGTAGCG
1 AGCAGATC-GAAGACACCAG--CCTGACCTCCCTG-AGTTTGCAGAG
120244 AAGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGTAG
1 -AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAG-AG
120289 AGCAGA
1 AGCAGA
120295 CTGAAGATAG
Statistics
Matches: 71, Mismatches: 15, Indels: 18
0.68 0.14 0.17
Matches are distributed among these distances:
43 5 0.07
44 35 0.49
45 26 0.37
46 5 0.07
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.19
Consensus pattern (43 bp):
AGCAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGCAGAG
Found at i:120480 original size:100 final size:100
Alignment explanation
Indices: 120355--120612 Score: 356
Period size: 100 Copynumber: 2.6 Consensus size: 100
120345 GACACCAGCC
* *
120355 AGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAA
1 AGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAA
* * *
120420 TCTTACTT-CTCTGGCGGTGCAGTGGAACAGATTGA
66 TCTTACTTCCT-TGGCAGTGCAGTGGAACAAATTAA
* * * *
120455 AGCTATAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAATAGCGAA
1 AGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAA
*
120520 TCTTACTTCCTTGGCAGTGTAGTGGAACAAATTAA
66 TCTTACTTCCTTGGCAGTGCAGTGGAACAAATTAA
* * * * * *
120555 AGCTACAATGGCGAATTTTGCTTCCCCAACATTGCAATTAAAATGATTGAAGCTACAA
1 AGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
120613 GTCTTATCTC
Statistics
Matches: 138, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 136 0.99
101 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (100 bp):
AGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAA
TCTTACTTCCTTGGCAGTGCAGTGGAACAAATTAA
Found at i:120502 original size:50 final size:50
Alignment explanation
Indices: 120355--120612 Score: 194
Period size: 50 Copynumber: 5.2 Consensus size: 50
120345 GACACCAGCC
*
120355 AGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
1 AGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGA
** * * * * ** * ** *
120405 AGCCGCAACGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGA
1 AGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGA
* *
120455 AGCTATAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTAA
1 AGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGA
* ** * ** * * * * * * *
120505 AGCCACAATAGCGAATCTTACTTCCTTGGCAGTGTAGTGGAACAA-ATTAA
1 AGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAGATTGA
* * * * * *
120555 AGCTACAATGGCGAATTTTGCTTCCCCAACATTGCAATTAAAATGATTGA
1 AGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGA
120605 AGCTACAA
1 AGCTACAA
120613 GTCTTATCTC
Statistics
Matches: 151, Mismatches: 55, Indels: 4
0.72 0.26 0.02
Matches are distributed among these distances:
49 3 0.02
50 144 0.95
51 4 0.03
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (50 bp):
AGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGA
Found at i:120679 original size:45 final size:45
Alignment explanation
Indices: 120615--120826 Score: 219
Period size: 45 Copynumber: 4.7 Consensus size: 45
120605 AGCTACAAGT
*
120615 CTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAAATAACAAAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAAATAACAAAC
* * * * **
120660 CTTATCTCCCTGAAGTTGTAGTGGAGCA-AGTTGAAGATACCGAGT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGA-CTGAAAATAACAAAC
* * * *
120705 CTTAGCTCCATGAAGTTGTAGTGGAGCAGACTGAAGATAACTAAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAAATAACAAAC
* ** * * *
120750 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAAATAAATAAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-GAAAAT-AACAAAC
* *
120797 CTTATCTCCCTGAAGTTGCAGTGGAACAGA
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGA
120827 TTAAAGCTAT
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.01
45 99 0.72
46 5 0.04
47 32 0.23
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAAATAACAAAC
Found at i:120728 original size:90 final size:90
Alignment explanation
Indices: 120612--120777 Score: 278
Period size: 90 Copynumber: 1.8 Consensus size: 90
120602 TGAAGCTACA
* *
120612 AGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAAGTT
1 AGTCTTAGCTCCATAAAGTTGTAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAAGTT
*
120677 GTAGTGGAGCAAGTTGAAGATACCG
66 GCAGTGGAGCAAGTTGAAGATACCG
* * *
120702 AGTCTTAGCTCCATGAAGTTGTAGTGGAGCAGACTGAAGATAACTAACCTTATCTCCCTGAAGTT
1 AGTCTTAGCTCCATAAAGTTGTAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAAGTT
120767 GCAGTGGAGCA
66 GCAGTGGAGCA
120778 GGTTAAAAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 70 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (90 bp):
AGTCTTAGCTCCATAAAGTTGTAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAAGTT
GCAGTGGAGCAAGTTGAAGATACCG
Found at i:120868 original size:51 final size:47
Alignment explanation
Indices: 120614--120878 Score: 184
Period size: 45 Copynumber: 5.7 Consensus size: 47
120604 AAGCTACAAG
* * * * *
120614 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGACT-GAAAAT-AACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAATAAATAAA
* * * * *** *
120659 CCTTATCTCCCTGAAGTTGTAGTGGAGCA-AGTT-GAAGAT-ACCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAAAATAAATAAA
* * * * * * *
120704 TCTTAGCTCCATGAAGTTGTAGTGGAGCAGACT-GAAGATAACT-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAATAAATAAA
* *
120749 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAAATAAATAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAATAAATAAA
* ** *
120796 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTACCGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-AAATAAA-TA--AA
* *
120847 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
120879 CATATCAGGT
Statistics
Matches: 180, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
44 1 0.01
45 97 0.54
46 10 0.06
47 35 0.19
48 5 0.03
49 2 0.01
51 30 0.17
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (47 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAATAAATAAA
Found at i:120949 original size:45 final size:45
Alignment explanation
Indices: 120887--121001 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 45
120877 ATCATATCAG
*
120887 GTCTTATCCTCCT-GAAGTTGCAGTGGGA-CAGACTAAAGATAGTGA
1 GTCTTAT-CTCCTCGAAGTTGCAGTGGGAGCAGACTAAAGATACT-A
* *
120932 GTCTTATCTCCTCGAAGTTGCAGT-GGAGCAGACTGAAGCTACTA
1 GTCTTATCTCCTCGAAGTTGCAGTGGGAGCAGACTAAAGATACTA
* *
120976 ATCCTATCTCC-CTGAAGTTGCAGTGG
1 GTCTTATCTCCTC-GAAGTTGCAGTGG
121002 AACGGATTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
43 1 0.02
44 29 0.48
45 31 0.51
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (45 bp):
GTCTTATCTCCTCGAAGTTGCAGTGGGAGCAGACTAAAGATACTA
Found at i:120986 original size:44 final size:46
Alignment explanation
Indices: 120895--121002 Score: 127
Period size: 44 Copynumber: 2.4 Consensus size: 46
120885 AGGTCTTATC
* * *
120895 CTCCT-GAAGTTGCAGTGG-GACAGACTAAAGATAGTGAGTCTTAT
1 CTCCTCGAAGTTGCAGTGGAGACAGACTAAAGATACTGAATCCTAT
* *
120939 CTCCTCGAAGTTGCAGTGGAG-CAGACTGAAGCTACT-AATCCTAT
1 CTCCTCGAAGTTGCAGTGGAGACAGACTAAAGATACTGAATCCTAT
120983 CTCC-CTGAAGTTGCAGTGGA
1 CTCCTC-GAAGTTGCAGTGGA
121003 ACGGATTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.02
44 29 0.52
45 25 0.45
46 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (46 bp):
CTCCTCGAAGTTGCAGTGGAGACAGACTAAAGATACTGAATCCTAT
Found at i:122124 original size:39 final size:39
Alignment explanation
Indices: 122070--122186 Score: 131
Period size: 39 Copynumber: 3.1 Consensus size: 39
122060 AAAAAAACCC
122070 AAATCAGGTATAAATATTTCAAAAAGGAGATCTAAACAA
1 AAATCAGGTATAAATATTTCAAAAAGGAGATCTAAACAA
**
122109 AAATCAGGTATAAATATTT-ACAAAA--A-A---AAACCC
1 AAATCAGGTATAAATATTTCA-AAAAGGAGATCTAAACAA
* *
122142 AAATCAGGTATAAATAACTACAAAAAGGAGATCTAAACAA
1 AAATCAGGTATAAAT-ATTTCAAAAAGGAGATCTAAACAA
122182 AAATC
1 AAATC
122187 TTAGGTTTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
33 19 0.30
34 6 0.10
35 1 0.02
36 2 0.03
37 2 0.03
38 1 0.02
39 23 0.37
40 9 0.14
ACGTcount: A:0.56, C:0.13, G:0.10, T:0.21
Consensus pattern (39 bp):
AAATCAGGTATAAATATTTCAAAAAGGAGATCTAAACAA
Found at i:122151 original size:33 final size:33
Alignment explanation
Indices: 122058--122167 Score: 114
Period size: 33 Copynumber: 3.2 Consensus size: 33
122048 TTGGTTCCAA
122058 AAAAAAAAACCCAAATCAGGTATAAATATTT-C
1 AAAAAAAAACCCAAATCAGGTATAAATATTTAC
**
122090 AAAAAGGAGATCTAAACAAAAATCAGGTATAAATATTTAC
1 -AAAA--A-A---AAACCCAAATCAGGTATAAATATTTAC
**
122130 AAAAAAAAACCCAAATCAGGTATAAATAACTAC
1 AAAAAAAAACCCAAATCAGGTATAAATATTTAC
122163 AAAAA
1 AAAAA
122168 GGAGATCTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
33 32 0.50
35 1 0.02
36 2 0.03
37 1 0.02
39 27 0.42
40 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.08, T:0.19
Consensus pattern (33 bp):
AAAAAAAAACCCAAATCAGGTATAAATATTTAC
Found at i:132809 original size:96 final size:96
Alignment explanation
Indices: 132700--132946 Score: 386
Period size: 96 Copynumber: 2.6 Consensus size: 96
132690 ACGCGGTCAC
* * * **
132700 CTTTTTATTATTTTTATGATGGATAATTAATTATGACGAGTCTTCGCCACTTTTGCTAGTGGGAC
1 CTTTTTATTATTTTTATGATGAATAATTAATTATGAAGAGTCTTCACCACTTTTGCTACAGGGAC
*
132765 AGGCATCGTTGATGAATTATTGATGCTGTTA
66 AGGCATCGTTGATGAATTATTGATGCTGCTA
* *
132796 CTTTTTATTATTTTTATGATGAATAATTAATTATCAAGAGTCTTCACCACTTTCGCTACAGGGAC
1 CTTTTTATTATTTTTATGATGAATAATTAATTATGAAGAGTCTTCACCACTTTTGCTACAGGGAC
*
132861 AGGCATCGTTGATGGATTATTGATGCTGCTA
66 AGGCATCGTTGATGAATTATTGATGCTGCTA
* * *
132892 CTTGTTACTATTTTTATGATGAATAATTAAGTATGAAGAGTCTTCACCACTTTTG
1 CTTTTTATTATTTTTATGATGAATAATTAATTATGAAGAGTCTTCACCACTTTTG
132947 AATAATTAAG
Statistics
Matches: 137, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 137 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (96 bp):
CTTTTTATTATTTTTATGATGAATAATTAATTATGAAGAGTCTTCACCACTTTTGCTACAGGGAC
AGGCATCGTTGATGAATTATTGATGCTGCTA
Found at i:133101 original size:11 final size:11
Alignment explanation
Indices: 133060--133113 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
133050 TTTAATCTCT
133060 AAAATTATATG
1 AAAATTATATG
*
133071 AAAATGTTATATT
1 AAAA--TTATATG
**
133084 ACGATTATATG
1 AAAATTATATG
133095 AAAATTATATG
1 AAAATTATATG
*
133106 AAAGTTAT
1 AAAATTAT
133114 TCCATTATAG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
11 26 0.76
13 8 0.24
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (11 bp):
AAAATTATATG
Found at i:136530 original size:17 final size:18
Alignment explanation
Indices: 136504--136541 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
136494 GTATTGATAA
*
136504 TAATAATAAATTAA-TAG
1 TAATAATAAACTAATTAG
*
136521 TAATATTAAACTAATTAG
1 TAATAATAAACTAATTAG
136539 TAA
1 TAA
136542 GAAACACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (18 bp):
TAATAATAAACTAATTAG
Found at i:139580 original size:41 final size:41
Alignment explanation
Indices: 139465--139580 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
139455 GGTGCTAATC
* * * *
139465 GAAAAATGCCACAAAAGGTTAGAGCTTTAGCAGCGTTTATGA
1 GAAAAATGCCACAAAAGGTCA-AGCATTAGCGGCGTCTATGA
* *
139507 GAAAAATGCCATAAAAGGTCAAGCAATAGCGGCGTCTATGA
1 GAAAAATGCCACAAAAGGTCAAGCATTAGCGGCGTCTATGA
* * *
139548 GAAAAATGCCACAAAAAGTGAAGCATTGGCGGC
1 GAAAAATGCCACAAAAGGTCAAGCATTAGCGGC
139581 ATTTATATTT
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 44 0.70
42 19 0.30
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (41 bp):
GAAAAATGCCACAAAAGGTCAAGCATTAGCGGCGTCTATGA
Found at i:139867 original size:21 final size:22
Alignment explanation
Indices: 139830--139877 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
139820 CATTTGAAAG
139830 TAAAAATATAGAAAAATATATGT
1 TAAAAATATAGAAAAATATAT-T
*
139853 TAAAAATA-A-AAAAATTTATT
1 TAAAAATATAGAAAAATATATT
139873 TAAAA
1 TAAAA
139878 TAATTTTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 6 0.25
21 9 0.38
22 1 0.04
23 8 0.33
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (22 bp):
TAAAAATATAGAAAAATATATT
Found at i:140317 original size:19 final size:19
Alignment explanation
Indices: 140293--140346 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
140283 AATCTTCAAG
*
140293 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAC
140312 GATATGCAATCTTAGATAC
1 GATATGCAATCTTAGATAC
140331 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
140347 AGATATGGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGATAC
Found at i:143460 original size:16 final size:16
Alignment explanation
Indices: 143439--143471 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
143429 TTTGAAAGAG
143439 TTTCAAATATATATGC
1 TTTCAAATATATATGC
*
143455 TTTCAAATTTATATGC
1 TTTCAAATATATATGC
143471 T
1 T
143472 CTAAAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGC
Found at i:144263 original size:14 final size:14
Alignment explanation
Indices: 144244--144271 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
144234 GTTGGTTTCA
144244 CTTCTTTTTCTTTT
1 CTTCTTTTTCTTTT
144258 CTTCTTTTTCTTTT
1 CTTCTTTTTCTTTT
144272 AGAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
CTTCTTTTTCTTTT
Found at i:148563 original size:4 final size:4
Alignment explanation
Indices: 148554--148578 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
148544 ATAATTTAAA
148554 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
148579 TATTAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:151170 original size:16 final size:16
Alignment explanation
Indices: 151149--151181 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
151139 TTTGAAAGAG
151149 TTTCAAATATATATGC
1 TTTCAAATATATATGC
*
151165 TTTCAAATTTATATGC
1 TTTCAAATATATATGC
151181 T
1 T
151182 CTAAAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGC
Found at i:151258 original size:22 final size:23
Alignment explanation
Indices: 151230--151276 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
151220 TTGATATGTT
151230 TAATTTT-TTAATATAACTCAAA
1 TAATTTTATTAATATAACTCAAA
* *
151252 TAATTTTACTTGATATGACTCAAA
1 TAATTTTA-TTAATATAACTCAAA
151276 T
1 T
151277 TTTATTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
24 14 0.67
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (23 bp):
TAATTTTATTAATATAACTCAAA
Found at i:152085 original size:5 final size:5
Alignment explanation
Indices: 152075--152100 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
152065 CTCTGAAAGT
152075 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
152101 GTATTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:152826 original size:5 final size:5
Alignment explanation
Indices: 152803--152838 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
152793 GGTTTCACTT
152803 TTTTA TGTTTA TGTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA T-TTTA T-TTTA TTTTA TTTTA TTTTA TTTT
152839 TAGAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 19 0.63
6 11 0.37
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:160716 original size:29 final size:29
Alignment explanation
Indices: 160683--160763 Score: 117
Period size: 30 Copynumber: 2.8 Consensus size: 29
160673 TTACATTTCA
* *
160683 ACCCCTAAACTTTCTCAAAATTCATCTTG
1 ACCCCTTAACTTTCTAAAAATTCATCTTG
* *
160712 ACCCCTTAACTTTCTTAAAATTTCATTTTG
1 ACCCCTTAACTTTC-TAAAAATTCATCTTG
160742 ACCCCTTAACTTTCTAAAAATT
1 ACCCCTTAACTTTCTAAAAATT
160764 ACATTTTGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 20 0.43
30 26 0.57
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.40
Consensus pattern (29 bp):
ACCCCTTAACTTTCTAAAAATTCATCTTG
Found at i:160743 original size:30 final size:30
Alignment explanation
Indices: 160670--160799 Score: 147
Period size: 29 Copynumber: 4.4 Consensus size: 30
160660 CAAAAAATAT
** * *
160670 AAATTACATTTCAACCCCTAAACTTTCTCA
1 AAATTACATTTTGACCCCTTAACTTTCTTA
*
160700 AAATT-CATCTTGACCCCTTAACTTTCTTA
1 AAATTACATTTTGACCCCTTAACTTTCTTA
* *
160729 AAATTTCATTTTGACCCCTTAACTTTCTAA
1 AAATTACATTTTGACCCCTTAACTTTCTTA
** * *
160759 AAATTACATTTTGGTCCCGT-ATTTTCTTA
1 AAATTACATTTTGACCCCTTAACTTTCTTA
160788 AAATTACATTTT
1 AAATTACATTTT
160800 CCCCCAGAAA
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
29 43 0.50
30 43 0.50
ACGTcount: A:0.31, C:0.23, G:0.04, T:0.42
Consensus pattern (30 bp):
AAATTACATTTTGACCCCTTAACTTTCTTA
Found at i:160799 original size:59 final size:59
Alignment explanation
Indices: 160670--160799 Score: 154
Period size: 59 Copynumber: 2.2 Consensus size: 59
160660 CAAAAAATAT
* * *
160670 AAATTACATTTCAACCCCTAAACTTTCTCAAAATTCATCTTGACCCCTTAACTTTCTTA
1 AAATTACATTTTAACCCCTAAACTTTCTAAAAATTCATCTTGACCCCGTAACTTTCTTA
* * * * ** *
160729 AAATTTCATTTTGACCCCTTAACTTTCTAAAAATTACATTTTGGTCCCGT-ATTTTCTTA
1 AAATTACATTTTAACCCCTAAACTTTCTAAAAATT-CATCTTGACCCCGTAACTTTCTTA
160788 AAATTACATTTT
1 AAATTACATTTT
160800 CCCCCAGAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 49 0.83
60 10 0.17
ACGTcount: A:0.31, C:0.23, G:0.04, T:0.42
Consensus pattern (59 bp):
AAATTACATTTTAACCCCTAAACTTTCTAAAAATTCATCTTGACCCCGTAACTTTCTTA
Found at i:165738 original size:14 final size:14
Alignment explanation
Indices: 165719--165745 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
165709 TTCTTCCTTT
165719 TATCTTCAATCGAG
1 TATCTTCAATCGAG
165733 TATCTTCAATCGA
1 TATCTTCAATCGA
165746 AGGAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (14 bp):
TATCTTCAATCGAG
Found at i:168686 original size:44 final size:43
Alignment explanation
Indices: 168623--168763 Score: 149
Period size: 44 Copynumber: 3.0 Consensus size: 43
168613 GAGACAACAC
168623 AAGGAAATGA-GCAGAAACACAGATTTGAGAATATGGAAGCAAAA
1 AAGGAAATGATG-AGAAACACAGATTTGAGAAT-TGGAAGCAAAA
* *
168667 AAGGAAATGATGAGAAACACAGATTCGAGAATTAGAAAGCAAAAAACAA
1 AAGGAAATGATGAGAAACACAGATTTGAGAATT-GGAAGC----AA-AA
168716 AGAGTGGAAATGATGAGAAACACAGATTTGAGAACTTGGAAGCAAAA
1 A-A--GGAAATGATGAGAAACACAGATTTGAGAA-TTGGAAGCAAAA
168763 A
1 A
168764 GCACTTTGGA
Statistics
Matches: 82, Mismatches: 4, Indels: 19
0.78 0.04 0.18
Matches are distributed among these distances:
43 1 0.01
44 34 0.41
45 1 0.01
47 3 0.04
48 4 0.05
49 3 0.04
50 1 0.01
52 33 0.40
53 2 0.02
ACGTcount: A:0.52, C:0.09, G:0.24, T:0.14
Consensus pattern (43 bp):
AAGGAAATGATGAGAAACACAGATTTGAGAATTGGAAGCAAAA
Found at i:170680 original size:244 final size:243
Alignment explanation
Indices: 170100--170806 Score: 816
Period size: 244 Copynumber: 2.9 Consensus size: 243
170090 ACAATGCTAT
* * * *
170100 TCACACGAGCTATGGAGTATCTATAACAAATACAGGACCTCAGCAATCGGTAGGACATTTAAGAC
1 TCACACGAGCTATGGAGTATCTACAACAAATGCAGGACCTCAGTAATCGGTAGGACATTCAAGAC
* * * *
170165 CAACACTCGAAACATGAAAAGCCTAATAACATGTCATTTGTA-TCTTACGAATTCCTAATGTCCA
66 CAACACTCGAAACATGAAAACCCTAATGACATGTCATTTGTATTC-TATGAATTCCTAAAGTCCA
* * * *
170229 ACCAGGAATCAATAATCATCAATTCGTAGTGACATTGATACGTTTATATATATATATATATCAAT
130 A-CGGGACTCAATAATCGTCAATTCGTAGTGACATTGATACG------T-T-TATATATATCGAT
* * * *
170294 CCAATTTCATTAAAAGTAACTTAGCATGATCGTCAATTCTTAGTGACATTGATGCTGT
186 CCAATTTCATTAAAAGTAACTTAGCATGATCATCAATTCGTAGTGACATCGATGCTGC
* * * *
170352 TCACACGAGCTATGGAGTATCTGCAACAAATGCAGGACCTTAGTAATCAGTAGGACATTCAAGGC
1 TCACACGAGCTATGGAGTATCTACAACAAATGCAGGACCTCAGTAATCGGTAGGACATTCAAGAC
* * * * *
170417 TAGCACTCGAAAGATGAAAACCCTAATGCCATGTCATTTGTATTCTATGAATTCCTAAAGTTCAA
66 CAACACTCGAAACATGAAAACCCTAATGACATGTCATTTGTATTCTATGAATTCCTAAAGTCCAA
* *
170482 TCGGGACTCAATAATCGTCAATTCGTAGTGACATTGATACGTTTATGTATATCGCTCCAATTTCA
131 -CGGGACTCAATAATCGTCAATTCGTAGTGACATTGATACGTTTATATATATCGATCCAATTTCA
170547 TTAAAAGTAACTTAGCATGA-CTATCAATTCGTAGTGACATCGATGCTGC
195 TTAAAAGTAACTTAGCATGATC-ATCAATTCGTAGTGACATCGATGCTGC
* * * * *
170596 TCACACAAGCTGTGGAGTATCCACAACAAATGCAGGACCTCAGTAATTGGTAGGAAATTCAAGAC
1 TCACACGAGCTATGGAGTATCTACAACAAATGCAGGACCTCAGTAATCGGTAGGACATTCAAGAC
* * * * * * *
170661 CAACACCCAAAACATGAAAACCCTAATGATTAAGTACATTTATATATATAT-ATATAT-C--GA-
66 CAACACTCGAAACATGAAAACCCTAATGA-CATGT-CATTTGTAT-TCTATGA-AT-TCCTAAAG
* * * *
170721 TCCAACTGGGACTCAATAACCGTCAATTTGTATTGACATTGATACATTTATATATATCGATCCAA
126 TCCAAC-GGGACTCAATAATCGTCAATTCGTAGTGACATTGATACGTTTATATATATCGATCCAA
170786 TTTCATTAAAAGTAACTTAGC
190 TTTCATTAAAAGTAACTTAGC
170807 CTGGCATTCA
Statistics
Matches: 392, Mismatches: 55, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
243 2 0.01
244 218 0.56
245 5 0.01
246 10 0.03
247 7 0.02
248 1 0.00
252 147 0.38
253 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (243 bp):
TCACACGAGCTATGGAGTATCTACAACAAATGCAGGACCTCAGTAATCGGTAGGACATTCAAGAC
CAACACTCGAAACATGAAAACCCTAATGACATGTCATTTGTATTCTATGAATTCCTAAAGTCCAA
CGGGACTCAATAATCGTCAATTCGTAGTGACATTGATACGTTTATATATATCGATCCAATTTCAT
TAAAAGTAACTTAGCATGATCATCAATTCGTAGTGACATCGATGCTGC
Found at i:175494 original size:7 final size:7
Alignment explanation
Indices: 175484--175533 Score: 82
Period size: 7 Copynumber: 7.1 Consensus size: 7
175474 GTTGGATGTT
175484 GTTAGTG
1 GTTAGTG
175491 GTTAGTG
1 GTTAGTG
175498 GTTAGTG
1 GTTAGTG
175505 GTTAGTG
1 GTTAGTG
175512 GTTAGTG
1 GTTAGTG
*
175519 GTTGGTG
1 GTTAGTG
*
175526 GTTGGTG
1 GTTAGTG
175533 G
1 G
175534 GGGAGTGGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.10, C:0.00, G:0.48, T:0.42
Consensus pattern (7 bp):
GTTAGTG
Found at i:179108 original size:22 final size:23
Alignment explanation
Indices: 179062--179108 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
179052 AAAAAATAAT
* **
179062 TTTATTATTTATATTTTTTTGAA
1 TTTATTATTTATAATTTTTAAAA
179085 TTTA-TATTTATAATTTTTAAAA
1 TTTATTATTTATAATTTTTAAAA
179107 TT
1 TT
179109 GGTATAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTATTTATAATTTTTAAAA
Found at i:186187 original size:2 final size:2
Alignment explanation
Indices: 186180--186207 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
186170 TAGTATTATT
186180 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
186208 TATATATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:191727 original size:16 final size:16
Alignment explanation
Indices: 191697--191730 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
191687 CTTTCTCTTA
*
191697 TTTGTTGATGGAACTT
1 TTTGTTGATCGAACTT
*
191713 TTTGTTGATCTAACTT
1 TTTGTTGATCGAACTT
191729 TT
1 TT
191731 CATTGTCAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.56
Consensus pattern (16 bp):
TTTGTTGATCGAACTT
Found at i:200061 original size:14 final size:14
Alignment explanation
Indices: 200042--200072 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
200032 GAAAAGAGCA
*
200042 CACAATTGTCAACG
1 CACAATTATCAACG
200056 CACAATTATCAACG
1 CACAATTATCAACG
200070 CAC
1 CAC
200073 CTGTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.19
Consensus pattern (14 bp):
CACAATTATCAACG
Found at i:204170 original size:43 final size:43
Alignment explanation
Indices: 204118--204302 Score: 228
Period size: 43 Copynumber: 4.3 Consensus size: 43
204108 TTTTATAAAT
* * *
204118 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCATTTCTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCTCAC
* * * *
204161 AAACGCCGCTATAGAACATGAGCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCTCAC
* * * *
204204 AAACGCCGCTAAAGATCAAGACCTTTAACGACGCTTTAAC-CAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTT-TCTCAC
* * *
204247 AAACGCTGCTAAAGAACATGATCTTTAGCGACGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCTCAC
204290 AAACGCCGCTAAA
1 AAACGCCGCTAAA
204303 AGTACAACTC
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
43 119 0.99
44 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCTCAC
Found at i:204316 original size:86 final size:86
Alignment explanation
Indices: 204118--204302 Score: 257
Period size: 86 Copynumber: 2.2 Consensus size: 86
204108 TTTTATAAAT
* * * *
204118 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCATTT--CTCACAAACGCCGCTATAGAACATG
1 AAACGCCGCTAAAGATCAAGACCTTTAACGACGC-TTTAAC-CACAAACGCCGCTAAAGAACATG
* *
204181 AGCTTTAGCGGCGCTTTTCCCAC
64 AGCTTTAGCGACGCTTTTACCAC
* *
204204 AAACGCCGCTAAAGATCAAGACCTTTAACGACGCTTTAACCACAAACGCTGCTAAAGAACATGAT
1 AAACGCCGCTAAAGATCAAGACCTTTAACGACGCTTTAACCACAAACGCCGCTAAAGAACATGAG
*
204269 CTTTAGCGACGCTTTTATCAC
66 CTTTAGCGACGCTTTTACCAC
204290 AAACGCCGCTAAA
1 AAACGCCGCTAAA
204303 AGTACAACTC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
85 3 0.03
86 84 0.95
87 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (86 bp):
AAACGCCGCTAAAGATCAAGACCTTTAACGACGCTTTAACCACAAACGCCGCTAAAGAACATGAG
CTTTAGCGACGCTTTTACCAC
Found at i:206910 original size:13 final size:13
Alignment explanation
Indices: 206892--206988 Score: 72
Period size: 13 Copynumber: 7.0 Consensus size: 13
206882 TTCGGCCGGT
*
206892 GGAGAATAAAGAA
1 GGAGAAGAAAGAA
206905 GGAGAAGAAA-AA
1 GGAGAAGAAAGAA
*
206917 AGAGAGAGAAAGAA
1 GGAGA-AGAAAGAA
206931 GGAGAAGAAAGAA
1 GGAGAAGAAAGAA
**
206944 AAAGAAAGAAAACGAAA
1 GGAG-AAG-AAA-G-AA
206961 GGA-AAGGAAAGGAAA
1 GGAGAA-GAAA-G-AA
206976 GGAGAAGAAAGAA
1 GGAGAAGAAAGAA
206989 AAAAAAAGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
12 6 0.09
13 26 0.38
14 10 0.15
15 19 0.28
16 4 0.06
17 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.33, T:0.01
Consensus pattern (13 bp):
GGAGAAGAAAGAA
Found at i:206929 original size:26 final size:27
Alignment explanation
Indices: 206899--206954 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
206889 GGTGGAGAAT
* *
206899 AAAGAAGGAGAAGAAA-AAAGAGAGAG
1 AAAGAAGGAGAAGAAAGAAAAAGAAAG
206925 AAAGAAGGAGAAGAAAGAAAAAGAAAG
1 AAAGAAGGAGAAGAAAGAAAAAGAAAG
206952 AAA
1 AAA
206955 ACGAAAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (27 bp):
AAAGAAGGAGAAGAAAGAAAAAGAAAG
Found at i:206950 original size:10 final size:10
Alignment explanation
Indices: 206913--207026 Score: 59
Period size: 10 Copynumber: 11.0 Consensus size: 10
206903 AAGGAGAAGA
*
206913 AAAAAGAGAG
1 AAAAAGAAAG
*
206923 AGAAAG-AAG
1 AAAAAGAAAG
* *
206932 GAGAAGAAAG
1 AAAAAGAAAG
206942 AAAAAGAAAG
1 AAAAAGAAAG
*
206952 AAAACGAAAGG
1 AAAAAGAAA-G
206963 AAAGGAAAGGAAAG
1 -AA--AAA-GAAAG
* *
206977 GAGAAGAAAG
1 AAAAAGAAAG
*
206987 AAAAAAAAAG
1 AAAAAGAAAG
*
206997 AAAAGGAAAG
1 AAAAAGAAAG
* *
207007 GAGAAGAAAG
1 AAAAAGAAAG
* *
207017 GAAAGGAAAG
1 AAAAAGAAAG
207027 GAGAAGAAGA
Statistics
Matches: 77, Mismatches: 21, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
9 5 0.06
10 59 0.77
11 3 0.04
12 2 0.03
13 1 0.01
14 3 0.04
15 4 0.05
ACGTcount: A:0.68, C:0.01, G:0.32, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:206967 original size:5 final size:5
Alignment explanation
Indices: 206937--207028 Score: 80
Period size: 5 Copynumber: 18.4 Consensus size: 5
206927 AGAAGGAGAA
* * * *
206937 GAAAG AAAAA GAAAG AAAAC GAAAG GAAAG GAAAG GAAAG GAGAA- GAAAG
1 GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GA-AAG GAAAG
* * * *
206987 AAAAA AAAAG AAAAG GAAAG GAGAA- GAAAG GAAAG GAAAG GA
1 GAAAG GAAAG GAAAG GAAAG GA-AAG GAAAG GAAAG GAAAG GA
207029 GAAGAAGAAG
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
4 4 0.06
5 63 0.89
6 4 0.06
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.00
Consensus pattern (5 bp):
GAAAG
Found at i:206970 original size:20 final size:20
Alignment explanation
Indices: 206937--207034 Score: 92
Period size: 20 Copynumber: 4.8 Consensus size: 20
206927 AGAAGGAGAA
* * *
206937 GAAAGAAAAAGAAAGAAAAC
1 GAAAGGAAAGGAAAGAAAAG
*
206957 GAAAGGAAAGGAAAGGAAAG
1 GAAAGGAAAGGAAAGAAAAG
* *
206977 GAGAA-GAAAGAAAAAAAAAG
1 GA-AAGGAAAGGAAAGAAAAG
*
206997 AAAAGGAAAGGAGAAG-AAAG
1 GAAAGGAAAGGA-AAGAAAAG
207017 GAAAGGAAAGGAGAAGAA
1 GAAAGGAAAGGA-AAGAA
207035 GAAGAGGGAG
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
19 2 0.03
20 56 0.89
21 5 0.08
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.00
Consensus pattern (20 bp):
GAAAGGAAAGGAAAGAAAAG
Found at i:206978 original size:45 final size:45
Alignment explanation
Indices: 206929--207023 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 45
206919 AGAGAGAAAG
*
206929 AAGGAGAAGAAAGAAAAAGAAAGAAAACGAAAGGA-AAGGAAAGGA
1 AAGGAGAAGAAAGAAAAAAAAAGAAAACGAAAGGAGAA-GAAAGGA
*
206974 AAGGAGAAGAAAGAAAAAAAAAGAAAAGGAAAGGAGAAGAAAGGA
1 AAGGAGAAGAAAGAAAAAAAAAGAAAACGAAAGGAGAAGAAAGGA
207019 AAGGA
1 AAGGA
207024 AAGGAGAAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 45 0.96
46 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.00
Consensus pattern (45 bp):
AAGGAGAAGAAAGAAAAAAAAAGAAAACGAAAGGAGAAGAAAGGA
Found at i:207412 original size:26 final size:26
Alignment explanation
Indices: 207383--207432 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
207373 ATATTCACCG
* *
207383 AAAATAATAAAATCCGAAAATAATGT
1 AAAATAATAAAATACAAAAATAATGT
207409 AAAATAATAAAATACAAAAATAAT
1 AAAATAATAAAATACAAAAATAAT
207433 ATATTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.68, C:0.06, G:0.04, T:0.22
Consensus pattern (26 bp):
AAAATAATAAAATACAAAAATAATGT
Found at i:208128 original size:155 final size:155
Alignment explanation
Indices: 207399--208129 Score: 915
Period size: 155 Copynumber: 4.7 Consensus size: 155
207389 ATAAAATCCG
* *
207399 AAAATAATGTAAAATAATAAAA-TACAAAAATAATATATTTTTATTGAAAGTAATAAAATTCGAG
1 AAAATAATGTAAAATAATAAAATTA-GAAAATAATATATTTTTATTG-AAGTAATAAAA-TCCAG
* *
207463 AAAAAAA-A-GAACAAAGGGCCGAAGTAAAGGTTATTTT-TTGAAATTTATTT--AAAAGATACT
63 AAAAAAATACGAACAAAGGGCCGAAGTAAGGGTT-TTTTACT-AAATTTATTTAAAAAAGATACT
* *
207523 GTAAATTAATACATTTCAAACATAATGTACT
126 -AAAATTAATACATTTCAAACATAATGTAAT
*
207554 AAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTA---AAGTAATAAAATCCGGAGA
1 AAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAGTAATAAAATCC--AGA
* * *
207616 AAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTACTAAA-TTATTTTAACAAA-ACAC-AA
64 AAAAAATACGAACAAAGGGCCGAAGTAAGGGTTTTTTACTAAATTTA-TTTAAAAAAGATACTAA
*
207678 TTAATTAATACATTTCAAACATAATGTACT
128 --AATTAATACATTTCAAACATAATGTAAT
* * *
207708 AAAATAATGTAAAATACTAAAATTAGAAAATAGTATATTTTTA---AAGTAATAAAAGCCGGAGA
1 AAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAGTAATAAAATCC--AGA
* **
207770 AAAAAATACGAACAAAGGGTCGAAGTAAGGGTTTTTTTGTAAATTTATTTAAAAAAGATACTAAA
64 AAAAAATACGAACAAAGGGCCGAAGTAAGGGTTTTTTACTAAATTTATTTAAAAAAGATACTAAA
*
207835 ATT-ATACATTTCAAATATAATGTAAT
129 ATTAATACATTTCAAACATAATGTAAT
* ** *
207861 AAACTAATGTAAAATAATAAAATTAGAAAATAATAT-TTTTTATTGAAAGTAATAAAATTCGGGG
1 AAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTG-AAGTAATAAAA-TCCAGA
* **
207925 AAAAAATACGAACAAAGGGTCGAAGTAAGGGTTTTTTTGTAAATTTATTTAAAAAAGATACTAAA
64 AAAAAATACGAACAAAGGGCCGAAGTAAGGGTTTTTTACTAAATTTATTTAAAAAAGATACTAAA
*
207990 ATT-ATACATTTCAAATATAATGTAAT
129 ATTAATACATTTCAAACATAATGTAAT
*
208016 AAACTAATGTAAAATAATAAAATTAGAAAATAATAT-TTTTTATTGAAGGTAATAAAATCCAGTA
1 AAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAA-GTAATAAAATCCAG-A
* *
208080 AAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTACTAAACTTATTT
64 AAAAAATACGAACAAAGGGCCGAAGTAAGGGTTTTTTACTAAATTTATTT
208130 TGAAGTTGCA
Statistics
Matches: 521, Mismatches: 34, Indels: 42
0.87 0.06 0.07
Matches are distributed among these distances:
150 2 0.00
151 11 0.02
152 19 0.04
153 65 0.12
154 170 0.33
155 238 0.46
156 15 0.03
157 1 0.00
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (155 bp):
AAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAGTAATAAAATCCAGAAA
AAAATACGAACAAAGGGCCGAAGTAAGGGTTTTTTACTAAATTTATTTAAAAAAGATACTAAAAT
TAATACATTTCAAACATAATGTAAT
Done.