Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1149

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2577
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1416 original size:133 final size:134

Alignment explanation


    Indices: 1167--1433  Score: 527
    Period size: 133  Copynumber: 2.0  Consensus size: 134

       1157 TGACACTTTA

                                                                             
       1167 ATCACTATTTGGGACGGTACTTATTTGTTTTTACATAAAAGTTTAAACTTTAGGTTTCAGCGTCA
          1 ATCACTATTTGGGACGGTACTTATTTGTTTTTACATAAAAGTTTAAACTTTAGGTTTCAGCGTCA

                                                                             
       1232 GACTTTCGGGGGCCAAAAAAAGAGAAATTATGTAAAACCCATGATAGTGACAACAACAAATGGGT
         66 GACTTTCGGGGGCCAAAAAAAGAGAAATTATGTAAAACCCATGATAGTGACAACAACAAATGGGT

                
       1297 TGAT
        131 TGAT

                                                                             
       1301 ATCACTATTT-GGACGGTACTTATTTGTTTTTACATAAAAGTTTAAACTTTAGGTTTCAGCGTCA
          1 ATCACTATTTGGGACGGTACTTATTTGTTTTTACATAAAAGTTTAAACTTTAGGTTTCAGCGTCA

                                                                             
       1365 GACTTTCGGGGGCCAAAAAAAGAGAAATTATGTAAAACCCATGATAGTGACAACAACAAATGGGT
         66 GACTTTCGGGGGCCAAAAAAAGAGAAATTATGTAAAACCCATGATAGTGACAACAACAAATGGGT

                
       1430 TGAT
        131 TGAT

       1434 TCTTGAAGTA


Statistics
Matches: 133,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
 133  123  0.92
 134   10  0.08

ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31


Consensus pattern (134 bp):   
ATCACTATTTGGGACGGTACTTATTTGTTTTTACATAAAAGTTTAAACTTTAGGTTTCAGCGTCA
GACTTTCGGGGGCCAAAAAAAGAGAAATTATGTAAAACCCATGATAGTGACAACAACAAATGGGT
TGAT
Done.