Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4523

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 312

Length: 521
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31


Found at i:112 original size:33 final size:34

Alignment explanation


    Indices: 75--139  Score: 80
    Period size: 33  Copynumber: 1.9  Consensus size: 34

         65 AATCATACTT

                               *     *         
         75 AAATAACAT-TAAAATAATTGC-AACTTAATAAAC
          1 AAATAAC-TCTAAAATAATAGCAAAATTAATAAAC

                 *                          
        108 AAATATCTCTAAAATAATAGCAAAATTAATAA
          1 AAATAACTCTAAAATAATAGCAAAATTAATAA

        140 TAAAACAAGA


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  32    1  0.04
  33   17  0.63
  34    9  0.33

ACGTcount: A:0.58, C:0.11, G:0.03, T:0.28


Consensus pattern (34 bp):   
AAATAACTCTAAAATAATAGCAAAATTAATAAAC
Done.