Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1077

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2922
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34


Found at i:2230 original size:15 final size:16

Alignment explanation


    Indices: 2210--2239  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2200 GGCCCGATAA

                            
       2210 ATTTTAA-AAAAATAT
          1 ATTTTAATAAAAATAT

                           
       2225 ATTTTAATAAAAATA
          1 ATTTTAATAAAAATA

       2240 AATTCGACAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (16 bp):   
ATTTTAATAAAAATAT

Done.