Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold222
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1154749
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.31
Warning! 71027 characters in sequence are not A, C, G, or T
File 1 of 4
Found at i:94 original size:42 final size:42
Alignment explanation
Indices: 1--867 Score: 722
Period size: 42 Copynumber: 20.5 Consensus size: 42
* * * * * *
1 GGGAGCCTCAAGCACCATCGGTAACTTGGTTGAAT-GGATGTAC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TG-CTCGGATGTGC
* * * *
44 GAGAGCCTCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
*
86 GGGAGCCTCGAGCAACATCGGCACCTTGGTGGCTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * *
129 GGGAGCCTCGAGCAGCATCGACACATTGGTGCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * * *
171 TGGAACCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * * ** * *
214 AGGAGACTCAAGCACCATTGGTTCCTTGGTACTCGGATGTGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * *
256 GGGAGCCTCTAGCCGCATCAGCACCTTGGTGGCTCGGATGTCC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * * * *
299 GAGAGACTCGAGCACCATCGGTACCTCGGTGCTCGGATCTGA
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* *
341 GGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGAGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * *
384 -GGAACCTCGAGCGGCTTCGGCACCTTGGTGCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
** * *
425 GGGAGCCTCGAGCAGCATCACCACCTTGGTGCTGGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
*
467 GGGAGCCTCGAGCCA-CATCGGAACCTTGGTGGCTCGGATGTGC
1 GGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * ** * * * * *
510 GGTAGCCTCGAGCACCATTTGTATCTTGGCGCTTGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * * *
552 GGGAGCCTCGAGCACCGTCGGTACCATGGTGGCTCGGATGTAC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* *
595 GGGAGCCTCGAGCAGCATCGGCACCCTGGTGCTTC-GATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGC
* * * * * *
637 AGGAGCCTCGAGTAGCATCCGTACCTTAGTGCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * *
679 GGGAGCCTCCCCA-CAGC--CGACACCTTGGTGGCTCAGATGCGC
1 GGGAGCCT--CGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * **
721 GGGAGCCTCGCGCAGCACCGGCACCCCGGTGGCTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * * *
764 CGGAGCCCCGAGCAGCATCTGCACCTAGGAGGTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * **
806 CGGAGCCTCGAGCACCATCCACACCTTGGTGCCTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGC
* *
849 AGGAGCCTCGAGCACCATC
1 GGGAGCCTCGAGCAGCATC
868 CGCAACTTTG
Statistics
Matches: 655, Mismatches: 150, Indels: 38
0.78 0.18 0.05
Matches are distributed among these distances:
40 1 0.00
41 24 0.04
42 353 0.54
43 275 0.42
44 2 0.00
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
Found at i:146 original size:85 final size:85
Alignment explanation
Indices: 1--867 Score: 757
Period size: 85 Copynumber: 10.2 Consensus size: 85
* * * * ** * * *
1 GGGAGCCTCAAGCACCATCGGTAACTTGGTTGAAT-GGATGTACGAGAGCCTCGAGTAGCATCGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGG
*
65 TACCTTGGTGCTTGGATGTGC
65 TACCTTGGTGCTCGGATGTGC
* **
86 GGGAGCCTCGAGCAACATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGAC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
* *
151 ACATTGGTGCTGGGATGTGC
66 ACCTTGGTGCTCGGATGTGC
* * * * * * * * * *
171 TGGAACCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAGCACCATTGGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
* * *
236 TCCTTGGTACTCGGATGTGG
66 ACCTTGGTGCTCGGATGTGC
* * * * * * *
256 GGGAGCCTCTAGCCGCATCAGCACCTTGGTGGCTCGGATGTCCGAGAGACTCGAGCACCATCGGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
* * *
321 ACCTCGGTGCTCGGATCTGA
66 ACCTTGGTGCTCGGATGTGC
* * * * * *
341 GGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGAGC-GGAACCTCGAGCGGCTTCGGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
*
405 ACCTTGGTGCTGGGATGTGC
66 ACCTTGGTGCTCGGATGTGC
** * *
425 GGGAGCCTCGAGCAGCATCACCACCTTGGT-GCTGGGATGTGTGGGAGCCTCGAGCCA-CATCGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGG
*
488 AACCTTGGTGGCTCGGATGTGC
65 TACCTTGGT-GCTCGGATGTGC
* * ** * * * * * * *
510 GGTAGCCTCGAGCACCATTTGTATCTTGG-CGCTTGGATGTGTGGGAGCCTCGAGCACCGTCGGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
* *
574 ACCATGGTGGCTCGGATGTAC
66 ACCTTGGT-GCTCGGATGTGC
* ** * *
595 GGGAGCCTCGAGCAGCATCGGCACCCTGGT-GCTTC-GATGTGTAGGAGCCTCGAGTAGCATCCG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC-TCGGATGTGCGGGAGCCTCGAGCAGCATCGG
* *
658 TACCTTAGTGCTGGGATGTGC
65 TACCTTGGTGCTCGGATGTGC
* * * * * *
679 GGGAGCCTCCCCA-CAGC--CGACACCTTGGTGGCTCAGATGCGCGGGAGCCTCGCGCAGCACCG
1 GGGAGCCT--CGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* **
741 GCACCCCGGTGGCTCGGATGTGC
64 GTACCTTGGT-GCTCGGATGTGC
* * * * * * * ***
764 CGGAGCCCCGAGCAGCATCTGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGCACCATCCAC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
828 ACCTTGGTGCCTCGGATGTGC
66 ACCTTGGTG-CTCGGATGTGC
* *
849 AGGAGCCTCGAGCACCATC
1 GGGAGCCTCGAGCAGCATC
868 CGCAACTTTG
Statistics
Matches: 626, Mismatches: 139, Indels: 34
0.78 0.17 0.04
Matches are distributed among these distances:
83 23 0.04
84 136 0.22
85 454 0.73
86 13 0.02
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (85 bp):
GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGT
ACCTTGGTGCTCGGATGTGC
Found at i:362 original size:170 final size:169
Alignment explanation
Indices: 61--867 Score: 677
Period size: 169 Copynumber: 4.8 Consensus size: 169
51 TCGAGTAGCA
* * * *
61 TCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGGCTCGGATG
1 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATG
* * * * * *
126 TGCGGGAGCCTCGAGCAGCATC-GACACATTGGTGCTGGGATGTGCTGGAACCGCGAGC-CGCAT
66 TGCGGGAGCCTCGAGCACCATCGGA-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CAT
*
189 CGGCACCTTGGTGGCTCAGATGTGCAGGAGA-CTCAAGCACCAT
129 CGGCACCTTGGTGGCTCAGATGAGC-GGA-ACCTCAAGCACC-T
** * * * *
232 T-GGTTCCTTGGTACTCGGATGTGGGGGAGCCTCTAGCCGCATCAGCACCTTGGTGGCTCGGATG
1 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATG
* * * * * * *
296 TCCGAGAGACTCGAGCACCATCGGTACCTCGGTGCTCGGATCTGAGGGAGCCTCGAGCACCATCG
66 TGCGGGAGCCTCGAGCACCATCGGAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * **
361 GCACCTTGGTGGCTCGGATGAGCGGAACCTCGAGCGGCT
131 GCACCTTGGTGGCTCAGATGAGCGGAACCTCAAGCACCT
* * *
400 TCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCACCACCTTGGT-GCTGGGATG
1 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATG
* *
464 TGTGGGAGCCTCGAGC-CACATCGGAACCTTGGTGGCTCGGATGTGCGGTAGCCTCGAGCACCAT
66 TGCGGGAGCCTCGAGCAC-CATCGGAACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCAT
** * * * ** * * * * *
528 TTGTATCTTGG-CGCTTGGATGTGTGGGAGCCTCGAGCACCG
129 CGGCACCTTGGTGGCTCAGATGAG-CGGAACCTCAAGCACCT
* * * * *
569 TCGGTACCATGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCCTGGT-GCTTC-GA
1 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGC-TCGGA
** * * * * * * **
632 TGTGTAGGAGCCTCGAGTAGCATCCGTACCTTAGTGCTGGGATGTGCGGGAGCCTC-CCCA-CAG
64 TGTGCGGGAGCCTCGAGCACCATCGGAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA-
* * * * ** * *
695 CCGACACCTTGGTGGCTCAGATGCGCGGGAGCCTCGCGCAGCA
128 TCGGCACCTTGGTGGCTCAGATGAGC-GGAACCTCAAGCACCT
* ** * * * * *
738 CCGGCACCCCGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGCATCTGCACCTAGGAGG-TCGGAT
1 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGAT
* * *
802 GTGCCGGAGCCTCGAGCACCATC-CACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCACCA
65 GTGCGGGAGCCTCGAGCACCATCGGA-ACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCA
866 TC
128 TC
868 CGCAACTTTG
Statistics
Matches: 506, Mismatches: 111, Indels: 38
0.77 0.17 0.06
Matches are distributed among these distances:
167 3 0.01
168 55 0.11
169 227 0.45
170 212 0.42
171 7 0.01
172 2 0.00
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (169 bp):
TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATG
TGCGGGAGCCTCGAGCACCATCGGAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
GCACCTTGGTGGCTCAGATGAGCGGAACCTCAAGCACCT
Found at i:727 original size:254 final size:250
Alignment explanation
Indices: 36--867 Score: 750
Period size: 254 Copynumber: 3.3 Consensus size: 250
26 TTGGTTGAAT
* * * * * * *
36 GGATGTACGAGAGCCTCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAA
1 GGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTCGGATGTACGGGAGCCTCGAGCAC
*
101 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT-CGACACATTGGTGCTGGG
66 CATCGGCACCTTGGTGGCTCGGATGTG-AGGAGCCTCGAGCAGCATCCGAC-C-TTGGTGCTGGG
* * * * * * * * *
165 ATGTGCTGGAACCGCGAGCCGCA-TCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAGCAC
128 ATGTGCGGGAGCCTC---CCACAGCCGACACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAC
* ** * * * * *
229 CATTGGTTCCTTGGT-ACTCGGATGTGGGGGAGCCTCTAGC-CGCATCAGCACCTTGGTGGCTC
190 CATCGGAACCTTGGTGGCTCGGATGT-GCGGAGCCTCGAGCAC-CATCTGCACCTTGG-AGCTC
* * * * *
291 GGATGTCCGAGAGACTCGAGCACCATCGGTACCTCGGTGCTCGGATCTGA-GGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTCGGATGT-ACGGGAGCCTCGAGCA
* * * * * *
355 CCATCGGCACCTTGGTGGCTCGGATGAGCGGAACCTCGAGCGGCTTCGGCACCTTGGTGCTGGGA
65 CCATCGGCACCTTGGTGGCTCGGATGTGAGGAGCCTCGAGCAGCATCCG-ACCTTGGTGCTGGGA
* ** *
420 TGTGCGGGAGCCT-CGAGCAGCATC-ACCACCTTGGT-GCTGGGATGTGTGGGAGCCTCGAGC-C
129 TGTGCGGGAGCCTCCCA-CAGC--CGA-CACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAC
* * * * *
481 ACATCGGAACCTTGGTGGCTCGGATGTGCGGTAGCCTCGAGCACCATTTGTATCTTGGCGCTT
190 -CATCGGAACCTTGGTGGCTCGGATGTGCGG-AGCCTCGAGCACCATCTGCACCTTGGAGCTC
* * *
544 GGATGTGTGGGAGCCTCGAGCACCGTCGGTACCATGGTGGCTCGGATGTACGGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGT-GCTCGGATGTACGGGAGCCTCGAGCA
* * * *
609 GCATCGGCACCCTGGT-GCTTC-GATGTGTAGGAGCCTCGAGTAGCATCCGTACCTTAGTGCTGG
65 CCATCGGCACCTTGGTGGC-TCGGATGTG-AGGAGCCTCGAGCAGCATCCG-ACCTTGGTGCTGG
* * *
672 GATGTGCGGGAGCCTCCCCACAGCCGACACCTTGGTGGCTCAGATGCGCGGGAGCCTCGCGCAGC
127 GATGTGCGGGAGCCT-CCCACAGCCGACACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACC
* * ** * * * *
737 ACCGGCACCCCGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGCATCTGCACCTAGGAGGTC
191 ATCGGAACCTTGGTGGCTCGGATGTG-CGGAGCCTCGAGCACCATCTGCACCTTGGAGCTC
* *** * *
798 GGATGTGCCGGAGCCTCGAGCACCATCCACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTG-CTCGGATGTACGGGAGCCTCGAGCA
863 CCATC
65 CCATC
868 CGCAACTTTG
Statistics
Matches: 465, Mismatches: 89, Indels: 47
0.77 0.15 0.08
Matches are distributed among these distances:
250 1 0.00
251 2 0.00
252 1 0.00
253 87 0.19
254 279 0.60
255 91 0.20
256 4 0.01
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.20
Consensus pattern (250 bp):
GGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTCGGATGTACGGGAGCCTCGAGCAC
CATCGGCACCTTGGTGGCTCGGATGTGAGGAGCCTCGAGCAGCATCCGACCTTGGTGCTGGGATG
TGCGGGAGCCTCCCACAGCCGACACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGG
AACCTTGGTGGCTCGGATGTGCGGAGCCTCGAGCACCATCTGCACCTTGGAGCTC
Found at i:802 original size:296 final size:294
Alignment explanation
Indices: 46--823 Score: 822
Period size: 296 Copynumber: 2.6 Consensus size: 294
36 GGATGTACGA
* *
46 GAGCCTCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAACA-TCGGCAC
1 GAGCCTCGAGTAGCATCGGTACCTTGGTGCTCGGATGTGCGGGAGCCTC---CAACAGCCGGCAC
* *
110 CTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACATTGGTGCTGGGATGTGCTGGA
63 CTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTGGGATGTGCCGGA
* * * * * *
175 ACCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAGCACCATTGGTTCCT
128 GCCCCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGC-GGAGCCTCGAGCACCATTGGTTCCT
* * * *
240 TGGTACTCGGATGTGGGGGAGCCTCTAGCCGCATCAGCACCTTGGTGGCTCGGATGTCCGAGAGA
192 TGGCACTCGGATGTGGGGGAGCCTCGAGCCGCATCAGCACCATGGTGGCTCGGATGTACGAGAGA
*
305 CTCGAGCACCATCGGTACCTCGGTGCTCGGATCTGAGG
257 CTCGAGCACCATCGGCACCTCGGTGCTCGGATCTGAGG
* * * * * * * *
343 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGAGC-GGAACCTCGAGCGGCTTCGGCAC
1 GAGCCTCGAGTAGCATCGGTACCTTGGT-GCTCGGATGTGCGGGAGCCTCCAACAGC--CGGCAC
* **
407 CTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATC-ACCACCTTGGTGCTGGGATGTGTGGG
63 CTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGA-CACCTTGGTGCTGGGATGTGCCGG
* * *
470 AGCCTCGAGCCA-CATCGGAACCTTGGTGGCTCGGATGTGCGGTAGCCTCGAGCACCATTTGTAT
127 AGCCCCGAG-CAGCATCGGCACCTTGGTGGCTCGGATGTGCGG-AGCCTCGAGCACCATTGGT-T
* * * * * * *
534 -CTTGGCGCTTGGATGTGTGGGAGCCTCGAGCAC-CGTCGGTACCATGGTGGCTCGGATGTACGG
189 CCTTGGCACTCGGATGTGGGGGAGCCTCGAGC-CGCATCAGCACCATGGTGGCTCGGATGTACGA
* * *
597 GAGCCTCGAGCAGCATCGGCACC-CTGGTGCTTC-GATGTGTA-G
253 GAGACTCGAGCACCATCGGCACCTC-GGTGC-TCGGATCTG-AGG
* * * * *
639 GAGCCTCGAGTAGCATCCGTACCTTAGTGCTGGGATGTGCGGGAGCCTCCCCACAGCCGACACCT
1 GAGCCTCGAGTAGCATCGGTACCTTGGTGCTCGGATGTGCGGGAGCCT-CCAACAGCCGGCACCT
* * * * * ** *
704 TGGTGGCTCAGATGCGCGGGAGCCTCGCGCAGCACCGGCACCCCGGTGGCTCGGATGTGCCGGAG
65 TGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGT-GCTGGGATGTGCCGGAG
* * *
769 CCCCGAGCAGCATCTGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGCACCAT
129 CCCCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTG-CGGAGCCTCGAGCACCAT
824 CCACACCTTG
Statistics
Matches: 396, Mismatches: 66, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
294 2 0.01
295 25 0.06
296 269 0.68
297 90 0.23
298 10 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (294 bp):
GAGCCTCGAGTAGCATCGGTACCTTGGTGCTCGGATGTGCGGGAGCCTCCAACAGCCGGCACCTT
GGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTGGGATGTGCCGGAGCC
CCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGAGCCTCGAGCACCATTGGTTCCTTGGC
ACTCGGATGTGGGGGAGCCTCGAGCCGCATCAGCACCATGGTGGCTCGGATGTACGAGAGACTCG
AGCACCATCGGCACCTCGGTGCTCGGATCTGAGG
Found at i:2292 original size:43 final size:43
Alignment explanation
Indices: 2229--3792 Score: 1162
Period size: 43 Copynumber: 36.8 Consensus size: 43
2219 NNNNAGGGGG
* * * * * *
2229 GGGAGCCTCGAGCAGTATCGGTACCTTGGTTGTTCGGATGTCC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
** * *
2272 AAGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATGTG-
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * *
2313 GAGGAGCCTCGAGTC-GTATCGGCACCTTGGGGGCTCGGATGTGT
1 G-GGAGCCTCGAG-CAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * * * *
2357 GGGAGCCTCGAGCAGTATCGGTACCTTGGTTGTTCGGATGTCC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
** *
2400 AAGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
2443 GGGAGCCTCGAGCACCATCGGCCCCTTGGTGGCTCGAATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
2486 GGGAGCCTCGAGCACCATCGGCCCCTTGGTGGCTCGAATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
*
2529 GGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGAATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * * * *
2572 GGGAGCCTCGAGCAACACCGACACCTTGGT-GCTGGGATATGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
2614 AGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * *
2657 GGGAGCCTCGAGCAGCATAGGCACCTTGGT-GCTGGGATATGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * ** *
2699 GGGAGCCTCGAGCTGCATTGACACCTTGGTGGCTCGGTTGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* ** * * *
2742 GGGAGCCTCGAGCAGTATCTTCAACTTGGT-GCATAG-ATGCGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC-TCGAATGTGC
* * * ** * * *
2784 AGTAGCGTCGAGCAGCATCAGG-ACCTTGGT-AATTGGATCTGC
1 GGGAGCCTCGAGCAGCATC-GGCACCTTGGTGGCTCGAATGTGC
* * * *
2826 GGGAGACTCGAGTACCATCGGCACCTTGGCTGGC-CGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGGCTCGAATGTGC
* * * * * * * *
2869 TGGAGCCTGGAGCAGGATCCGCACCTTGGT-TCTGGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * * * * *
2911 AGGAGCCTCGAGCCGTATCAGCACCTTGGGGGCTCGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * * *
2954 GGGAGCCT-TAGCAGCATCGGAACCTTGGT-CCTGGTATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
*
2995 GGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTC-AGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGA-ATGTGC
* * * * ** * *
3038 AGGAGCCTCAAGCACCATTGGTTCCTTGGT-GCTCGGATGTGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
3080 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTC-AGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGA-ATGTGC
* * * * ** * *
3123 AGGAGCCTCAAGCACCATTGGTTCCTTGGT-GCTCGGATGTGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
3165 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTC-AGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGA-ATGTGC
* * * * ** * *
3208 AGGAGCCTCAAGCACCATTGGTTCCTTGGT-GCTCGGATGTGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
3250 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTC-AGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGA-ATGTGC
* * * * ** * *
3293 AGGAGCCTCAAGCACCATTGGTTCCTTGGT-GCTCGGATGTGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* *
3335 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTC-AGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGA-ATGTGC
* * * * * * * * *
3378 GGGAGACTTGAGCACCATTGGTACCTCGGT-GCTCGGATCTGA
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
** ** * *
3420 GGGAGCCTTAAGCCCCATCGGCACCTTGGTGGCTCGGATGAGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * *
3463 -GGAGCCTCGAGCGGCTTCGGCACCTTGGT-GCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
** * * *
3504 GGGAGCCTCGAGCAGCATCACCACCTTGGT-GCTGGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * *
3546 GGGAGCCTCGAGCCA-CATCGGAACCTTGGTGGCTTGGATGTGC
1 GGGAGCCTCGAG-CAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * * * * * * * *
3589 GGTAGCCTTGTGCACCATTGGTATCTTGGT-GCTTGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * * * * * *
3631 GCGAGCCTCGAGCACCGTCGGTACCATGGTGGCTCGGATGTAC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * *
3674 GGGAGCCTCGAGCAGCATCGGCACCCTGGT-GCTTGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
* * *
3716 GGGAGCCTCCCCA-CAGC-T-GACACCTTGGTGGCTC-AGATGCGC
1 GGGAGCCT--CGAGCAGCATCGGCACCTTGGTGGCTCGA-ATGTGC
* *
3758 GGGAGCCTCGCGCAGCA-CTGGCACCTCGGTGGCTC
1 GGGAGCCTCGAGCAGCATC-GGCACCTTGGTGGCTC
3793 AAGCCTCGAG
Statistics
Matches: 1205, Mismatches: 271, Indels: 90
0.77 0.17 0.06
Matches are distributed among these distances:
40 1 0.00
41 44 0.04
42 533 0.44
43 624 0.52
44 3 0.00
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.22
Consensus pattern (43 bp):
GGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGAATGTGC
Found at i:2377 original size:85 final size:83
Alignment explanation
Indices: 2228--3792 Score: 1188
Period size: 85 Copynumber: 18.4 Consensus size: 83
2218 NNNNNAGGGG
* * * * * *
2228 GGGGAGCCTCGAGCAGTATCGGTACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCGG
1 GGGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCGG
*
2293 CACCTTGGTGCTGGGATGT
65 CACCTTGGTGCTCGGATGT
* * ** *
2312 GGAGGAGCCTCGAGTCGTATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCGAGCAGTATCG
1 GG-GGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
* *
2377 GTACCTTGGTTGTTCGGATGT
64 GCACCTTGG-TGCTCGGATGT
*** * * * *
2398 CCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCACCATCG
1 -GGGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
* *
2463 GCCCCTTGGTGGCTCGAATGT
64 GCACCTTGGT-GCTCGGATGT
* * * * *
2484 GCGGGAGCCTCGAGCACCATCGGCCCCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCACCATCG
1 G-GGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
*
2549 GCACCTTGGTGGCTCGAATGT
64 GCACCTTGGT-GCTCGGATGT
* * * * *
2570 GCGGGAGCCTCGAGCAACACCGACACCTTGGT-GCTGGGATATGCAGGAGCCTCGAGCAGCATCG
1 G-GGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
* *
2634 GCACCTTGGTGGCCCGAATGT
64 GCACCTTGGT-GCTCGGATGT
* * * * * *
2655 GCGGGAGCCTCGAGCAGCATAGGCACCTTGGT-GCTGGGATATGCGGGAGCCTCGAGCTGCATTG
1 G-GGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
* *
2719 ACACCTTGGTGGCTCGGTTGT
64 GCACCTTGGT-GCTCGGATGT
* ** * * * * *
2740 GTGGGAGCCTCGAGCAGTATCTTCAACTTGGT-GCAT-AGATGCGCAGTAGCGTCGAGCAGCATC
1 G-GGGAGCCTCGAGC-GCATCGGCACCTTGGTGGC-TCGGATGTGCAGGAGCCTCGAGCAGCATC
** * *
2803 AGG-ACCTTGGTAATTGGATCT
63 -GGCACCTTGGTGCTCGGATGT
* * * *
2824 GCGGGAGACTCGAGTAC-CATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTGGAGCAGGAT
1 G-GGGAGCCTCGAG--CGCATCGGCACCTTGG-TGGCTCGGATGTGCAGGAGCCTCGAGCAGCAT
* * *
2887 CCGCACCTTGGTTCTGGGATGT
62 CGGCACCTTGGTGCTCGGATGT
* * * * ** *
2909 GTAGGAGCCTCGAGCCGTATCAGCACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCATCG
1 G-GGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
* *
2973 GAACCTTGGTCCT-GGTATGT
64 GCACCTTGGTGCTCGG-ATGT
* * * *
2993 GCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTG
1 G-GGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
**
3058 GTTCCTTGGTGCTCGGATGT
64 GCACCTTGGTGCTCGGATGT
* * * * *
3078 GGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTG
1 -GGGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
**
3143 GTTCCTTGGTGCTCGGATGT
64 GCACCTTGGTGCTCGGATGT
* * * * *
3163 GGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTG
1 -GGGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
**
3228 GTTCCTTGGTGCTCGGATGT
64 GCACCTTGGTGCTCGGATGT
* * * * *
3248 GGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTG
1 -GGGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
**
3313 GTTCCTTGGTGCTCGGATGT
64 GCACCTTGGTGCTCGGATGT
* * * * * * *
3333 GGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGACTTGAGCACCATTG
1 -GGGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
* * *
3398 GTACCTCGGTGCTCGGATCT
64 GCACCTTGGTGCTCGGATGT
** * * * *
3418 GAGGGAGCCTTAAGCCCCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCGGCTTCG
1 G-GGGAGCCTCGAG-CGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCG
*
3482 GCACCTTGGTGCTGGGATGT
64 GCACCTTGGTGCTCGGATGT
** * **
3502 GCGGGAGCCTCGAGCAGCATCACCACCTTGGT-GCTGGGATGTGTGGGAGCCTCGAGCCA-CATC
1 G-GGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAG-CAGCATC
* *
3565 GGAACCTTGGTGGCTTGGATGT
63 GGCACCTTGGT-GCTCGGATGT
* * * * * * * * * * *
3587 GCGGTAGCCTTGTGCACCATTGGTATCTTGGT-GCTTGGATGTG-TGCGAGCCTCGAGCACCGTC
1 G-GGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAG-GAGCCTCGAGCAGCATC
* *
3650 GGTACCATGGTGGCTCGGATGT
63 GGCACCTTGGT-GCTCGGATGT
* * * * *
3672 ACGGGAGCCTCGAGCAGCATCGGCACCCTGGT-GCTTGGATGTGCGGGAGCCTCCCCA-CAGC-T
1 -GGGGAGCCTCGAGC-GCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCT--CGAGCAGCAT
* * *
3734 -GACACCTTGGTGGCTCAGATGC
62 CGGCACCTTGGT-GCTCGGATGT
* *
3756 GCGGGAGCCTCGCGCAGCA-CTGGCACCTCGGTGGCTC
1 G-GGGAGCCTCGAGC-GCATC-GGCACCTTGGTGGCTC
3793 AAGCCTCGAG
Statistics
Matches: 1253, Mismatches: 193, Indels: 69
0.83 0.13 0.05
Matches are distributed among these distances:
83 13 0.01
84 225 0.18
85 818 0.65
86 195 0.16
87 2 0.00
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.22
Consensus pattern (83 bp):
GGGGAGCCTCGAGCGCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCGGC
ACCTTGGTGCTCGGATGT
Found at i:2798 original size:170 final size:169
Alignment explanation
Indices: 2229--3767 Score: 1346
Period size: 170 Copynumber: 9.1 Consensus size: 169
2219 NNNNAGGGGG
* * * * * * *
2229 GGGAGCCTCGAGCAGTATCGGTACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCGGC
1 GGGAGCCTCGAGCCGCATCGGCACCTTGG-TGCTCGGATGTGCAGGAGCCTCGAGCACCATCGGC
* * * *
2294 ACCTTGGTGCTGGGATGTG-GAGGAGCCTCGAGTC-GTATCGGCACCTTGGGGGCTCGGATGTGT
65 ACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCACCTTGGTGGCTCGGATGTGC
** * * * *
2357 GGGAGCCTCGAGCAGTATCGGTACCTTGGTTGTTCGGATGTCC
128 GGGAGCCTCGAGCACCATTGGCACCTTGG-TGCTCGGATGTGC
** * * * *
2400 AAGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCACCATCGGC
1 GGGAGCCTCGAGCCGCATCGGCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCGGC
* * * * *
2465 CCCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCACCATCGGCCCCTTGGTGGCTCGAATGTGCG
65 ACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCG
* *
2530 GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGAATGTGC
129 GGAGCCTCGAGCACCATTGGCACCTTGGT-GCTCGGATGTGC
** * * * * *
2572 GGGAGCCTCGAGCAACACCGACACCTTGGTGCTGGGATATGCAGGAGCCTCGAGCAGCATCGGCA
1 GGGAGCCTCGAGCCGCATCGGCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCGGCA
* * * * *
2637 CCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGT-GCTGGGATATGCGG
66 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGG
** * * *
2701 GAGCCTCGAGCTGCATTGACACCTTGGTGGCTCGGTTGTGT
130 GAGCCTCGAGCACCATTGGCACCTTGGT-GCTCGGATGTGC
* * ** * * * * * *
2742 GGGAGCCTCGAGCAGTATCTTCAACTTGGTGCAT-AGATGCGCAGTAGCGTCGAGCAGCATCAGG
1 GGGAGCCTCGAGCCGCATCGGCACCTTGGTGC-TCGGATGTGCAGGAGCCTCGAGCACCATC-GG
** * * * * *
2806 -ACCTTGGTAATTGGATCTGCGGGAGACTCGAGTACCATCGGCACCTTGGCTGGC-CGGATGTGC
64 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGGCTCGGATGTGC
* * ** ** * * *
2869 TGGAGCCTGGAGCAGGATCCGCACCTTGGTTCTGGGATGTGT
128 GGGAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGC
* * * * ** * * *
2911 AGGAGCCTCGAGCCGTATCAGCACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCATCGGA
1 GGGAGCCTCGAGCCGCATCGGCACCTT-GGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCGGC
* * * *
2975 ACCTTGGTCCT-GGTATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCA
65 ACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCG
* ** *
3039 GGAGCCTCAAGCACCATTGGTTCCTTGGTGCTCGGATGTGG
129 GGAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGC
* * * * *
3080 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTGGT
1 GGGAGCCTCGAGCCGCATCGGCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCGGC
* * * * * *
3145 TCCTTGGTGCTCGGATGTGGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAG
65 ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGG
* ** *
3210 GAGCCTCAAGCACCATTGGTTCCTTGGTGCTCGGATGTGG
130 GAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGC
* * * * *
3250 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTGGT
1 GGGAGCCTCGAGCCGCATCGGCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCGGC
* * * * *
3315 TCCTTGGTGCTCGGATGTGGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCGG
65 ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGG
* * * * * *
3380 GAGACTTGAGCACCATTGGTACCTCGGTGCTCGGATCTGA
130 GAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGC
** * * ** *
3420 GGGAGCCTTAAGCCCCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCGGCTTCGGC
1 GGGAGCCTCGAGCCGCATCGGCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCGGC
* ** * *
3484 ACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCACCACCTTGGT-GCTGGGATGTGTGG
65 ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGG
* * *
3548 GAGCCTCGAGC-CACATCGGAACCTTGGTGGCTTGGATGTGC
130 GAGCCTCGAGCAC-CATTGGCACCTTGGT-GCTCGGATGTGC
* * * * * * * * *
3589 GGTAGCCTTGTGCAC-CATTGGTATCTTGGTGCTTGGATGTG-TGCGAGCCTCGAGCACCGTCGG
1 GGGAGCCTCGAGC-CGCATCGGCACCTTGGTGCTCGGATGTGCAG-GAGCCTCGAGCACCATCGG
* * * * *
3652 TACCATGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCCTGGT-GCTTGGATGTGC
64 CACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGC
** * * * *
3716 GGGAGCCTC-CCCA-CAGCTGACACCTTGGTGGCTCAGATGCGC
128 GGGAGCCTCGAGCACCA-TTGGCACCTTGGT-GCTCGGATGTGC
3758 GGGAGCCTCG
1 GGGAGCCTCG
3768 CGCAGCACTG
Statistics
Matches: 1141, Mismatches: 202, Indels: 52
0.82 0.14 0.04
Matches are distributed among these distances:
167 1 0.00
168 54 0.05
169 329 0.29
170 511 0.45
171 142 0.12
172 103 0.09
173 1 0.00
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.22
Consensus pattern (169 bp):
GGGAGCCTCGAGCCGCATCGGCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCGGCA
CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGG
AGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGC
Found at i:2897 original size:127 final size:127
Alignment explanation
Indices: 2279--2898 Score: 328
Period size: 128 Copynumber: 4.9 Consensus size: 127
2269 TCCAAGAGCC
* ** * * * *
2279 TCGAGCAGCATCGGCACCTTGGTGCTGGGATGTG-GAGGAGCCTCGAG-TCGTATCGGCACCTTG
1 TCGAGCAGCATAGGCACCTTGGTAATGGGATATGCG-GGAGACTCGAGCTC-CATCGACACCTTG
* * * * * * *
2342 GGGGCTCGGATGTGTGGGAGCCTCGAGCAGTATCGGTACCTTGGTTG-TTCGGATGTC-CAAG-A
64 GTGGCTCGGATGTGTGGGAGCCTCGAGCAGGATCCGCAACTTGG-TGCAT-AGATG-CGC-AGTA
*
2404 GCC
125 GCG
* **** * * * * * *
2407 TCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCACCATCGGCCCCTTGG
1 TCGAGCAGCATAGGCACCTTGGT-AATGGGATATGCGGGAGACTCGAGCTCCATCGACACCTTGG
* * ** * ** * * * * *
2472 TGGCTCGAATGTGCGGGAGCCTCGAGCACCATCGGCCCCTTGGTGGC-TCGAATGTGCGGGAGCC
65 TGGCTCGGATGTGTGGGAGCCTCGAGCAGGATCCGCAACTTGGT-GCATAG-ATGCGCAGTAGCG
* * ** * * * * ** *
2536 TCGAGCACCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAACACCGACACCTTGG
1 TCGAGCAGCATAGGCACCTTGGT-AATGGGATATGCGGGAGACTCGAGCTCCATCGACACCTTGG
* * ** * * * ** * * * *
2601 T-GCTGGGATATGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC-CCGAATGTGCGGGAGCC
65 TGGCTCGGATGTGTGGGAGCCTCGAGCAGGATCCGCAACTTGGT-GCATAG-ATGCGCAGTAGCG
** * * *
2664 TCGAGCAGCATAGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCTGCATTGACACCTTGGT
1 TCGAGCAGCATAGGCACCTTGGTAATGGGATATGCGGGAGACTCGAGCTCCATCGACACCTTGGT
* * **
2729 GGCTCGGTTGTGTGGGAGCCTCGAGCAGTATCTTCAACTTGGTGCATAGATGCGCAGTAGCG
66 GGCTCGGATGTGTGGGAGCCTCGAGCAGGATCCGCAACTTGGTGCATAGATGCGCAGTAGCG
* * *
2791 TCGAGCAGCATCAGG-ACCTTGGTAATTGGATCTGCGGGAGACTCGAG-TACCATCGGCACCTTG
1 TCGAGCAGCAT-AGGCACCTTGGTAATGGGATATGCGGGAGACTCGAGCT-CCATCGACACCTTG
* *
2854 GCTGGC-CGGATGTGCT-GGAGCCTGGAGCAGGATCCGCACCTTGGT
64 G-TGGCTCGGATGTG-TGGGAGCCTCGAGCAGGATCCGCAACTTGGT
2899 TCTGGGATGT
Statistics
Matches: 411, Mismatches: 67, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
126 1 0.00
127 127 0.31
128 144 0.35
129 137 0.33
130 2 0.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (127 bp):
TCGAGCAGCATAGGCACCTTGGTAATGGGATATGCGGGAGACTCGAGCTCCATCGACACCTTGGT
GGCTCGGATGTGTGGGAGCCTCGAGCAGGATCCGCAACTTGGTGCATAGATGCGCAGTAGCG
Found at i:2906 original size:212 final size:213
Alignment explanation
Indices: 2229--3606 Score: 758
Period size: 212 Copynumber: 6.5 Consensus size: 213
2219 NNNNAGGGGG
* * * * * ** * *
2229 GGGAGCCTCGAGCAGTATCGGTACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCGGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTGGGATGTGCGGGAGCCTCGAGCAGCATTGAC
* ** * * * * *
2294 ACCTTGGT-GCTGGGATGTG-GAGGAGCCTCGAGTC-GTATCGGCACCTTGGGGGCTCGGATGTG
65 ACCTTGGTGGCTCGGATGTGTG-GGAGCCTCGAG-CACCATCGGCAACTTGGTGGCTAGAATGCG
** ** ** ** * * * * *
2356 TGGGAGCCTCGAGCAGTATC-GGTACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCG
128 CAGGAGCCTCGAGCAACA-CAGACACCTTGG-TAATGGGATATGCAGGAGACTCGAGCAGCATCG
2420 GCACCTTGGTGGCCCGAATGTGC
191 GCACCTTGGTGGCCCGAATGTGC
* * * * * * *
2443 GGGAGCCTCGAGCACCATCGGCCCCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCACCATCGGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATTGAC
* * * * * * *
2508 CCCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGAATGTGCG
65 ACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGCAACTTGGTGGCTAGAATGCGCA
* ** *
2573 GGAGCCTCGAGCAACACCGACACCTTGGTGCTGGGATATGCAGGAGCCTCGAGCAGCATCGGCAC
130 GGAGCCTCGAGCAACACAGACACCTTGGTAATGGGATATGCAGGAGACTCGAGCAGCATCGGCAC
2638 CTTGGTGGCCCGAATGTGC
195 CTTGGTGGCCCGAATGTGC
* * *
2657 GGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCTGCATTGACA
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATTGACA
* ** **
2722 CCTTGGTGGCTCGGTTGTGTGGGAGCCTCGAGCAGTATCTTCAACTTGGT-GCATAG-ATGCGCA
66 CCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGCAACTTGGTGGC-TAGAATGCGCA
* * * * * * * * *
2785 GTAGCGTCGAGCAGCATCAG-GACCTTGGTAATTGGATCTGCGGGAGACTCGAGTACCATCGGCA
130 GGAGCCTCGAGCAACA-CAGACACCTTGGTAATGGGATATGCAGGAGACTCGAGCAGCATCGGCA
*
2849 CCTTGGCTGG-CCGGATGTGC
194 CCTTGG-TGGCCCGAATGTGC
* * * * * ** * * *
2869 TGGAGCCTGGAGCAGGATCCGCACCTTGGTTCTGGGATGTGTAGGAGCCTCGAGCCGTA-TCAGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATTGA-C
* * * * * * *
2933 ACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCATCGG-AACCTTGGT-CCTGGTATGTGC
65 ACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGCAA-CTTGGTGGCTAGAATGCGC
* ** * ** ** * * * * *
2995 GGGAGCCTCGAGCCGCATC-GGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTGG
129 AGGAGCCTCGAGCAACA-CAGACACCTTGGT-AATGGGATATGCAGGAGACTCGAGCAGCATCGG
** * * *
3059 TTCCTTGGT-GCTCGGATGTGG
192 CACCTTGGTGGCCCGAATGTGC
* * ** * * * **
3080 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCACCATTGGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATTGAC
* * * * *
3145 TCCTTGGT-GCTCGGATGTGGGGGAGCCTCTAGC-CGCATCGGCACCTTGGTGGCTCAG-ATGTG
65 ACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAC-CATCGGCAACTTGGTGGCT-AGAATGCG
* * ** *** ** * * ** * * *
3207 CAGGAGCCTCAAGCACCATTGGTTCCTTGGTGCTCGGATGTGGGGGAGCCTCTAGCCGCATCGGC
128 CAGGAGCCTCGAGCAACACAGACACCTTGGTAATGGGATATGCAGGAGACTCGAGCAGCATCGGC
*
3272 ACCTTGGTGGCTC-AGATGTGC
193 ACCTTGGTGGCCCGA-ATGTGC
* * * * ** * * * * * *
3293 AGGAGCCTCAAGCACCATTGGTTCCTTGGTGCTCGGATGTGGGGGAGCCTCTAGCCGCATCGGCA
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATTGACA
* * * * * * * * * *
3358 CCTTGGTGGCTCAGATGTGCGGGAGACTTGAGCACCATTGGTACCTCGGT-GCTCGGAT-CTG-A
66 CCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGCAACTTGGTGGCTAGAATGC-GCA
** ** * ** * * * *
3420 GGGAGCCTTAAGCCCCATC-GGCACCTTGGTGGCTCGGATGA-GC-GGAGCCTCGAGCGGCTTCG
130 -GGAGCCTCGAGCAACA-CAGACACCTTGGT-AATGGGAT-ATGCAGGAGACTCGAGCAGCATCG
** *
3482 GCACCTTGGT-GCTGGGATGTGC
191 GCACCTTGGTGGCCCGAATGTGC
** * *
3504 GGGAGCCTCGAGCAGCATCACCACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCCA-CATCGGA
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAG-CAGCAT-TGA
* * * * *
3568 -ACCTTGGTGGCTTGGATGTGCGGTAGCCTTGTGCACCAT
64 CACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCAT
3607 TGGTATCTTG
Statistics
Matches: 927, Mismatches: 202, Indels: 73
0.77 0.17 0.06
Matches are distributed among these distances:
210 6 0.01
211 188 0.20
212 341 0.37
213 182 0.20
214 142 0.15
215 67 0.07
216 1 0.00
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.22
Consensus pattern (213 bp):
GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATTGACA
CCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGCAACTTGGTGGCTAGAATGCGCAG
GAGCCTCGAGCAACACAGACACCTTGGTAATGGGATATGCAGGAGACTCGAGCAGCATCGGCACC
TTGGTGGCCCGAATGTGC
Found at i:4347 original size:42 final size:41
Alignment explanation
Indices: 4295--4446 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 41
4285 TTGGTGGCTC
* *
4295 GGATATGCGGGAGCCTCGAGCACCATCGGAACCTTAGTGCTT
1 GGATGTGCGGGAGCCTCGAGCACCATCGGAACCTT-GTGCTA
*
4337 GGATGTGCGGGAGCCTCG-GCCACCATCGGCAACCTTGATGCTC
1 GGATGTGCGGGAGCCTCGAG-CACCATCGG-AACCTTG-TGCTA
*
4380 GGATGTGCGGGAGCCTCGACCACCATC-GACACCTTGGTGCTA
1 GGATGTGCGGGAGCCTCGAGCACCATCGGA-ACCTT-GTGCTA
* *
4422 GGATGTCCGGAAGCCTCGAGCACCA
1 GGATGTGCGGGAGCCTCGAGCACCA
4447 AAGCTGAAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
41 2 0.02
42 59 0.61
43 36 0.37
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (41 bp):
GGATGTGCGGGAGCCTCGAGCACCATCGGAACCTTGTGCTA
Found at i:4446 original size:85 final size:86
Alignment explanation
Indices: 4282--4439 Score: 230
Period size: 85 Copynumber: 1.8 Consensus size: 86
4272 AGCCTCAAGC
* * * *
4282 ACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGAACCTTAGTGCTTGGATGTGCGG
1 ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGAACCTTAGTGCTAGGATGTCCGG
*
4347 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
* *
4368 ACCTTGAT-GCTCGGATGTGCGGGAGCCTCGACCACCATC-GACACCTTGGTGCTAGGATGTCCG
1 ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGA-ACCTTAGTGCTAGGATGTCCG
4431 GAAGCCTCG
65 GAAGCCTCG
4440 AGCACCAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 2 0.03
85 55 0.86
86 7 0.11
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGAACCTTAGTGCTAGGATGTCCGG
AAGCCTCGGCCACCATCGGCA
Found at i:7950 original size:23 final size:23
Alignment explanation
Indices: 7907--7968 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
7897 CCGGCTGTGA
* *
7907 TCCGGCGATCCATCCCGGCGGTGC
1 TCCGGTGATCCAT-CCGGCGGCGC
* *
7931 TCCTGTGGTCCATCCGGCGGCGC
1 TCCGGTGATCCATCCGGCGGCGC
7954 TCCGGTGATCCATCC
1 TCCGGTGATCCATCC
7969 TGGTATATAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 22 0.69
24 10 0.31
ACGTcount: A:0.08, C:0.40, G:0.31, T:0.21
Consensus pattern (23 bp):
TCCGGTGATCCATCCGGCGGCGC
Found at i:8165 original size:42 final size:42
Alignment explanation
Indices: 8102--8370 Score: 255
Period size: 42 Copynumber: 6.4 Consensus size: 42
8092 GAGGTGGCTC
*
8102 GGATGTGCGGGAG-CCTCGAGCCGCATCGGCACCTCGGTGCT
1 GGATGTGCGGGAGCCCTCGAGCCGCATCGGCACCTTGGTGCT
* *
8143 GGAATGTGCGGGAGCCCT-GAGCCACATCAGCACCTTGGTGCT
1 GG-ATGTGCGGGAGCCCTCGAGCCGCATCGGCACCTTGGTGCT
* * *
8185 GGAATGTACGAGAGCCC-CGAGCCGCATCGGTACCTTGGTGGCT
1 GG-ATGTGCGGGAGCCCTCGAGCCGCATCGGCACCTTGGT-GCT
* * * * * *
8228 CGGATGTGTGGGAG-GCTCGAGCAGCATCCGTACCTTGGTACTT
1 -GGATGTGCGGGAGCCCTCGAGCCGCATCGGCACCTTGGTGC-T
*
8271 GGATGTGCGGGAG-CCTCGGGCAC-CATCGGCACCTTGGTGGCT
1 GGATGTGCGGGAGCCCTCGAGC-CGCATCGGCACCTTGGT-GCT
* * **
8313 CGGATGAGCAGGAGCCC-CGAGGAGCATCGGCACCTTGGTGCT
1 -GGATGTGCGGGAGCCCTCGAGCCGCATCGGCACCTTGGTGCT
8355 GGGATGTGCGGGAGCC
1 -GGATGTGCGGGAGCC
8371 TCNNNNNNNN
Statistics
Matches: 186, Mismatches: 30, Indels: 23
0.78 0.13 0.10
Matches are distributed among these distances:
41 2 0.01
42 115 0.62
43 65 0.35
44 4 0.02
ACGTcount: A:0.16, C:0.28, G:0.38, T:0.19
Consensus pattern (42 bp):
GGATGTGCGGGAGCCCTCGAGCCGCATCGGCACCTTGGTGCT
Found at i:8266 original size:85 final size:84
Alignment explanation
Indices: 8102--8372 Score: 300
Period size: 85 Copynumber: 3.2 Consensus size: 84
8092 GAGGTGGCTC
*
8102 GGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTCGGT-GCT-GGAATGTGCGGGA-GCCCTGAG
1 GGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG-ATGTGCGGGAGGCCC-GAG
8164 CCA-CATCAGCACCTTGGTGCT
64 -CAGCATCAGCACCTTGGTGCT
* * * * * *
8185 GGAATGTACGAGAGCCCCGAGCCGCATCGGTACCTTGGTGGCTCGGATGTGTGGGAGGCTCGAGC
1 GG-ATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGGCCCGAGC
* * *
8250 AGCATCCGTACCTTGGTACTT
65 AGCATCAGCACCTTGGTGC-T
* * * * *
8271 GGATGTGCGGGAGCCTCGGGCAC-CATCGGCACCTTGGTGGCTCGGATGAGCAGGAGCCCCGAGG
1 GGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGGCCCGAGC
*
8335 AGCATCGGCACCTTGGTGCT
65 AGCATCAGCACCTTGGTGCT
8355 GGGATGTGCGGGAGCCTC
1 -GGATGTGCGGGAGCCTC
8373 NNNNNNNNNN
Statistics
Matches: 156, Mismatches: 24, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
83 2 0.01
84 34 0.22
85 111 0.71
86 9 0.06
ACGTcount: A:0.16, C:0.28, G:0.38, T:0.19
Consensus pattern (84 bp):
GGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGGCCCGAGCA
GCATCAGCACCTTGGTGCT
Found at i:8360 original size:127 final size:127
Alignment explanation
Indices: 8094--8372 Score: 329
Period size: 127 Copynumber: 2.2 Consensus size: 127
8084 GTGGCTCAGA
* * *
8094 GGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTCGGTGCTGGAATGTGCGGGAGCC
1 GGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCCGCACCTCGGTACTGGAATGTGCGGGAGCC
* *
8159 CTGAGCCACATCAGCACCTTGGTGCTGGAATGTACGAGAGCCCCGAGCCGCATCGGTACCTT
66 CTGAGCCACATCAGCACCTTGGTGCTGGAATGTACGAGAGCCCCGAGCAGCATCGGCACCTT
* * * *
8221 GGTGGCTCGGATGTGTGGGAGGCTCGAGCAGCATCCGTACCTTGGTACTTGG-ATGTGCGGGAG-
1 GGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCCGCACCTCGGTAC-TGGAATGTGCGGGAGC
* * *
8284 CCTCG-GGCACCATCGGCACCTTGGTGGCTCGG-ATG-A-GCAGGAGCCCCGAGGAGCATCGGCA
65 CCT-GAGCCA-CATCAGCACCTTGGT-GCT-GGAATGTACG-A-GAGCCCCGAGCAGCATCGGCA
8345 CCTT
124 CCTT
*
8349 GGT-GCTGGGATGTGCGGGAGCCTC
1 GGTGGCTCGGATGTGCGGGAGCCTC
8373 NNNNNNNNNN
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
126 7 0.05
127 87 0.67
128 34 0.26
129 2 0.02
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.19
Consensus pattern (127 bp):
GGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCCGCACCTCGGTACTGGAATGTGCGGGAGCC
CTGAGCCACATCAGCACCTTGGTGCTGGAATGTACGAGAGCCCCGAGCAGCATCGGCACCTT
Found at i:8505 original size:43 final size:42
Alignment explanation
Indices: 8417--8579 Score: 245
Period size: 42 Copynumber: 3.8 Consensus size: 42
8407 NNNNNNNNNN
*
8417 CTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCAC
1 CTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCAC
8460 CTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCAAC
1 CTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGC-AC
*
8503 CTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGACAC
1 CTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCAC
* * * * *
8545 CTTGGTGCTAGGATGTCCAGAAGCCTCGAGCACCA
1 CTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCA
8580 AAGCTGAAGT
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
42 65 0.58
43 47 0.42
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (42 bp):
CTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCAC
Found at i:8570 original size:85 final size:86
Alignment explanation
Indices: 8417--8579 Score: 256
Period size: 85 Copynumber: 1.9 Consensus size: 86
8407 NNNNNNNNNN
* * * * * *
8417 CTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGA
1 CTTGGTGGCTCGGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCAGAA
8482 GCCTCGACCACCATCGGCAAC
66 GCCTCGACCACCATCGGCAAC
8503 CTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCAGAA
1 CTTGGTGGCTCGGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCAGAA
*
8567 GCCTCGAGCACCA
66 GCCTCGACCACCA
8580 AAGCTGAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 64 0.91
86 6 0.09
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (86 bp):
CTTGGTGGCTCGGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCAGAA
GCCTCGACCACCATCGGCAAC
Found at i:12723 original size:23 final size:24
Alignment explanation
Indices: 12663--12740 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
12653 CCAGTTAGGT
12663 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGACGATCCA
* *
12687 TCCCGGCGGTGCTCGGGCGATCCA
1 TCCCGGCGGTGCTCCGACGATCCA
* *
12711 T-CCGGCGGCGCTCCTG-TGATCCA
1 TCCCGGCGGTGCTCC-GACGATCCA
12734 TCCCGGC
1 TCCCGGC
12741 ATATAGAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 18 0.38
24 29 0.62
ACGTcount: A:0.09, C:0.41, G:0.32, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGACGATCCA
Found at i:12915 original size:42 final size:42
Alignment explanation
Indices: 12840--13559 Score: 879
Period size: 42 Copynumber: 17.0 Consensus size: 42
12830 ACATGGCAGT
*
12840 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
12883 ATCGGCACCTTGGTGCTCGGCTGTGCGAGAGCCTCGACCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
12925 ATCGACACCTTGGAGCTTC-GATGTGCGAGAGCCTCGACCAAC
1 ATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACC
* **
12967 ATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCTTC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
13010 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
13052 ATCGGCACCTTGGTGCCTCGGATGTGCCGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
13095 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
13137 ATCGGCACCTTGGTGGTCGGATGTACGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * **
13179 ATAGGCACCTTGGTGCTTGGATGTGCGGGTGCCTCAAGCAGA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
13221 ACCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
13264 ATCGGCACCTTGGTGCTGGGATGTACGAGAGCCTCGAGCACT
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
13306 ATCGGCACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
13348 ATCGGCACCTTGGTGCCTCGGATGTACGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
13391 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
13433 ATCGGCACCTTGGTGCTCGAATGTGCGGGAGCCTCG-GCTACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-ACC
* *
13475 ATCGGTAACCTTAGTGCTC-GATGTGCGGGAGCCTCGAGCACC
1 ATCGG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
** * * **
13517 ATCTACAACTTGGTGCTAGGATGTGCGCAAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
13559 A
1 A
13560 AAGTTAAAGT
Statistics
Matches: 583, Mismatches: 84, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
41 11 0.02
42 395 0.68
43 177 0.30
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (42 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:13055 original size:127 final size:127
Alignment explanation
Indices: 12840--13559 Score: 876
Period size: 127 Copynumber: 5.7 Consensus size: 127
12830 ACATGGCAGT
* *
12840 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGCT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * * * * *
12905 GTGCGAGAGCCTCGACCACCATCGACACCTTGGAGCTTCGATGTGCGAGAGCCTCGACCAAC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAAC
* ** *
12967 ATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCTTCATCGGCACCTTGGTGCTGGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * * * *
13032 GTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCCGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTC-GATGTGCGGGAGCCTCGAGCAAC
* * * * *
13095 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGGTCGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * * * *
13159 GTACGGGAGCCTCGAGCACCATAGGCACCTTGGTGCTTGGATGTGCGGGTGCCTCAAGCAGA-
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCA-AC
* * *
13221 ACCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * * ** * *
13286 GTACGAGAGCCTCGAGCACTATCGGCACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAAC
* * * *
13348 ATCGGCACCTTGGTGCCTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * * *
13413 GTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGC-TCGAATGTGCGGGAGCCTCG-GCTACC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTCG-ATGTGCGGGAGCCTCGAGC-AAC
* * ** * *
13475 ATCGGTAACCTTAGT-GCTC-GATGTGCGGGAGCCTCGAGCACCATCTACAACTTGGTGCTAGGA
1 ATCGG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
**
13538 TGTGCGCAAGCCTCGAGCACCA
65 TGTGCGGGAGCCTCGAGCACCA
13560 AAGTTAAAGT
Statistics
Matches: 508, Mismatches: 78, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
126 89 0.18
127 380 0.75
128 39 0.08
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (127 bp):
ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAAC
Found at i:13168 original size:169 final size:167
Alignment explanation
Indices: 12840--13543 Score: 872
Period size: 169 Copynumber: 4.2 Consensus size: 167
12830 ACATGGCAGT
* * *
12840 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGCT
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTGCTCGGAT
* * * * * *
12905 GTG-CGAGAGCCTCGACCACCATCGACACCTTGGAGCTTCGATGTGCGAGAGCCTCGACCAACAT
65 GTGCCG-GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCG-GCACCAT
* **
12969 CAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCTTC
128 CGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
*
13010 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTGCCTCGGAT
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTG-CTCGGAT
* * * *
13075 GTGCCGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATC
65 GTGCCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCG-GCACCATC
* *
13140 GGCACCTTGGTGGTCGGATGTACGGGAGCCTCGAGCACC
129 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
13179 ATAGGCACCTTGGTGCTTGGATGTGCGGGTGCCTCAAGCAGAACCGGCACCTTGGTGCCTCGGAT
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTG-CTCGGAT
* * * *
13244 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTACGAGAGCCTCGAGCACTATC
65 GTGCCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCG-GCACCATC
* * *
13309 GGCACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCAGC
129 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
13348 ATCGGCACCTTGGTGCCTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTGCTCGGAT
** * * * * *
13413 GTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGAATGTGCGGGAGCCTCGGCTACCATC
65 GTGCCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGC-ACCATC
* *
13478 GGTAACCTTAGTGCTC-GATGTGCGGGAGCCTCGAGCACC
129 GG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
** * *
13517 ATCTACAACTTGGTGCTAGGATGTGCG
1 ATCGGCACCTTGGTGCTCGGATGTGCG
13544 CAAGCCTCGA
Statistics
Matches: 464, Mismatches: 65, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
168 12 0.03
169 323 0.70
170 127 0.27
171 2 0.00
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.21
Consensus pattern (167 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTGCTCGGATG
TGCCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGCACCATCGG
CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:13847 original size:24 final size:23
Alignment explanation
Indices: 13820--13885 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
13810 GTTCCTGGTT
*
13820 GTGCTCCGGCGATCCATCTCGGTG
1 GTGCTCCGGCGATCCATC-CGGCG
13844 GTGCTCCGGCGATCCATCCGGCG
1 GTGCTCCGGCGATCCATCCGGCG
* * *
13867 GCGTTCCGGTGATCCATCC
1 GTGCTCCGGCGATCCATCC
13886 CAGTATATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
23 20 0.53
24 18 0.47
ACGTcount: A:0.09, C:0.36, G:0.32, T:0.23
Consensus pattern (23 bp):
GTGCTCCGGCGATCCATCCGGCG
Found at i:14111 original size:85 final size:85
Alignment explanation
Indices: 13988--14541 Score: 692
Period size: 85 Copynumber: 6.5 Consensus size: 85
13978 CACATGGCAG
* *
13988 CATCGGCACCTTGGTGGCTCGGATGTGTGGGAACCTCGAGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
14053 TGTGCGGGAGCCTCGACCAC
66 TGTGCGGGAGCCTCGACCAC
* * * * *
14073 CATCGGCACCTTGGTGGCTCAGATATGCGGGAGACTCGAGCAGCGTCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
14138 TGTGCGGGAGCCTCGAGCA-
66 TGTGCGGGAGCCTCGACCAC
* * *
14157 GAACTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGACACCTTGGTGC-TG
1 CATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTTG
*
14220 GAATGTGCGGGAGCC-CTGAGCC-G
64 G-ATGTGCGGGAGCCTC-GA-CCAC
* * * * *
14243 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGGCTCGAGTAGCATCCGCACCTTGGTACTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
14308 TGTGCGGGAGCCTCGAGCAC
66 TGTGCGGGAGCCTCGACCAC
* * * *
14328 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCAGCTTGGTGC-TGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG-
* *
14392 ATGTACGGGAGCCTCGAGCC-G
65 ATGTGCGGGAGCCTCGA-CCAC
* * * *
14413 CATCGGCACCTTCGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
14478 TGTGCGGGAGCCTCGACCAC
66 TGTGCGGGAGCCTCGACCAC
** * * *
14498 CATCGATACCTTGGT-GCTAGGATGTCCGGAAGCCTCGAGCACCA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCA
14542 AAGCTGAATT
Statistics
Matches: 401, Mismatches: 54, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
84 36 0.09
85 355 0.89
86 10 0.02
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.20
Consensus pattern (85 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGACCAC
Found at i:15492 original size:24 final size:24
Alignment explanation
Indices: 15458--15534 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
15448 CCGGTTAGGT
* *
15458 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGTGGTGCTCCGGCGATCCA
* *
15482 TCCCGGTGGTGCTCTGGCAATCCA
1 TCCCGGTGGTGCTCCGGCGATCCA
* * *
15506 T-CCGGTGGCGCTCCGGTGATCTA
1 TCCCGGTGGTGCTCCGGCGATCCA
15529 TCCCGG
1 TCCCGG
15535 CATATAGAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
23 18 0.42
24 25 0.58
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.22
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGATCCA
Found at i:15686 original size:42 final size:41
Alignment explanation
Indices: 15638--15785 Score: 172
Period size: 42 Copynumber: 3.5 Consensus size: 41
15628 TGGCAGTATC
*
15638 GGCACCTTAGGGCTCGGATGTGCGGGAGCCTCGAGCACCATT
1 GGCACCTT-GGGCTCGGATGTGCGGGAGCCTCGACCACCATT
* * * *
15680 GGCACCTTCGTGCTCGGATGTGTGAGAGCCTCGACCACCATC
1 GGCACCTT-GGGCTCGGATGTGCGGGAGCCTCGACCACCATT
15722 GGCACCTTGGAGCTTC-GATGTGCGGGAGCCTCGACCACCATT
1 GGCACCTTGG-GC-TCGGATGTGCGGGAGCCTCGACCACCATT
* *
15764 AGCACATTGGTGGCTCGGATGT
1 GGCACCTT-G-GGCTCGGATGT
15786 TTACAAGATC
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 77 0.87
43 10 0.11
44 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (41 bp):
GGCACCTTGGGCTCGGATGTGCGGGAGCCTCGACCACCATT
Found at i:18504 original size:24 final size:24
Alignment explanation
Indices: 18472--18521 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
18462 CCGGTTAGGT
18472 TCCCAGTGGTGCTCCGACGATCCA
1 TCCCAGTGGTGCTCCGACGATCCA
* **
18496 TCCCGGTGGTGCTCCGGTGATCCA
1 TCCCAGTGGTGCTCCGACGATCCA
18520 TC
1 TC
18522 TGCCGGTGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.36, G:0.28, T:0.24
Consensus pattern (24 bp):
TCCCAGTGGTGCTCCGACGATCCA
Found at i:18695 original size:43 final size:42
Alignment explanation
Indices: 18644--19692 Score: 1173
Period size: 43 Copynumber: 24.8 Consensus size: 42
18634 GGAGTACATG
* *
18644 GCAGCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCAA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
18687 GCACCATCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * * * *
18729 CCACCATTGCCACCTTGGTGGTTCGGATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * * *
18772 GCAGTATCGACACCTTGGTGCTTGGATGTACGGGTGTCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
18814 GCAGAACCGGCACCTTGGTGGCTCGGATGTG-GGGAAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGG-AGCCTCGA
* * * ** *
18857 GCCGCATCAGCACCTTGGTGCTGGGATGTGCGGTTGCCACGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
18899 GCCGTATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* **
18942 GCAGCATCGGCATCTTGGTGCTTAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
18984 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
19027 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
19069 GCAGCATCGGCACCTTGGCGGCTCGGATGTACGGGAGCCTCGA
1 GCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGA
* * * * *
19112 GCACCGTCGGCAGCTTGGTGCTGGGATGTG-GGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
19153 GCAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
19196 GCACCATCGGCACCTTGGTGCTTGGATGTGTGGGAGCCACGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
19238 GCAGTATCGGCACTTTGGTGGCTCAGATGTGTGGGAGCCTGGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
19281 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * **
19323 GCAGAACCGGCACCTTGGTGCTGGGATGTGATGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
19365 GCAGCATCGACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * *
19408 GCAGCATTGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
19450 GCACCATCGGCACATTGGTGGCTCGAATGTGCAGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
19493 GCAGCATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
19535 CCAGCATC-G-----TGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
19572 CCAGCATCGGCACCGTGGGGGCTCGGATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACC-TTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
19614 GACACCATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
19658 GCACCATCGGCACCTTGGCGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CT-CGGATGTGCGGG
19693 CTAAACGAAA
Statistics
Matches: 844, Mismatches: 137, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
36 4 0.00
37 30 0.04
38 1 0.00
41 27 0.03
42 375 0.44
43 401 0.48
44 6 0.01
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:18756 original size:85 final size:85
Alignment explanation
Indices: 18644--19692 Score: 1262
Period size: 85 Copynumber: 12.4 Consensus size: 85
18634 GGAGTACATG
* * *
18644 GCAGCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCAAGCACCATCGGCACCTTGGTACT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
18709 TGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * * ** *
18729 CCACCATTGCCACCTTGGTGGTTCGGATATGCGGGAGACTCGAGCAGTATCGACACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
18794 TGGATGTACGGGTGTCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * *
18814 GCAGAACCGGCACCTTGGTGGCTCGGATGTG-GGGAAGCCTCGAGC-CGCATCAGCACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGG-AGCCTCGAGCAC-CATCGGCACCTTGGTG
* ** *
18877 CTGGGATGTGCGGTTGCCACGA
64 CTTGGATGTGCGGGAGCCTCGA
* * * * *
18899 GCCGTATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
18964 TAGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * *
18984 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
19049 GGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * *
19069 GCAGCATCGGCACCTTGGCGGCTCGGATGTACGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
19134 GGGATGTG-GGGAGACTCGA
66 TGGATGTGCGGGAGCCTCGA
*
19153 GCAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
19218 TGGATGTGTGGGAGCCACGA
66 TGGATGTGCGGGAGCCTCGA
* * * * *
19238 GCAGTATCGGCACTTTGGTGGCTCAGATGTGTGGGAGCCTGGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
19303 TGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * ** * *
19323 GCAGAACCGGCACCTTGGT-GCTGGGATGTGATGGAGCCTCGAGCAGCATCGACACCTTGGTGCC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-C
*
19387 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * *
19408 GCAGCATTGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCACCATCGGCACATTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
* * *
19472 TCGAATGTGCAGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * *
19493 GCAGCATCGGTACCTTGGT-GCTGGGATGTGCGGGAGCCTC--G-ACCA---GCATCGTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
19551 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * *
19572 CCAGCATCGGCACCGTGGGGGCTCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
19636 CTTGGATGTGCGGGAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * *
19658 GCACCATCGGCACCTTGGCGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTGGCT-CGGATGTGCGGG
19693 CTAAACGAAA
Statistics
Matches: 827, Mismatches: 121, Indels: 31
0.84 0.12 0.03
Matches are distributed among these distances:
79 44 0.05
80 20 0.02
81 1 0.00
82 4 0.00
83 5 0.01
84 116 0.14
85 574 0.69
86 56 0.07
87 7 0.01
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAGCCTCGA
Found at i:18906 original size:127 final size:126
Alignment explanation
Indices: 18644--19675 Score: 1164
Period size: 127 Copynumber: 8.1 Consensus size: 126
18634 GGAGTACATG
* * * * *
18644 GCAGCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCAAGCACCATCGGCACCTTGGTACT
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* * * * * * * *
18709 TGGATGTGCGGGAGCCTCGACCACCATTGCCACCTTGGTGGTTCGGATATGCGGGAGACTCGA
65 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * * * *
18772 GCAGTATCGACACCTTGGTGCTTGGATGTACGGGTGTCTCGAGCAGAACCGGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
* * * ** *
18837 CGGATGTG-GGGAAGCCTCGAGCCGCATCAGCACCTTGGTGCTGGGATGTGCGGTTGCCACGA
65 CGGATGTGCGGG-AGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
18899 GCCGTATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
** *
18964 TAGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGA
65 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
19027 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGCGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCT
* * * * * *
19092 CGGATGTACGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGCTGGGATGTG-GGGAGACTCGA
65 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
** *
19153 GCAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* * * * * * * *
19218 TGGATGTGTGGGAGCCACGAGCAGTATCGGCACTTTGGTGGCTCAGATGTGTGGGAGCCTGGA
65 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
19281 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGCTG
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTC
** *
19346 GGATGTGATGGAGCCTCGAGCAGCATCGACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGA
66 GGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * * *
19408 GCAGCATTGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCGGCACATTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
* * * *
19473 CGAATGTGCAGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
19535 CCAGCATC-G-----TGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCGGCACCGTGGGGGC
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC-TTGGTGC
* *
19594 TCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
64 TCGGATGTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
19658 GCACCATCGGCACCTTGG
1 GCAGCATCGGCACCTTGG
19676 CGCCTACGAT
Statistics
Matches: 760, Mismatches: 123, Indels: 41
0.82 0.13 0.04
Matches are distributed among these distances:
121 5 0.01
122 59 0.08
123 39 0.05
124 1 0.00
126 62 0.08
127 371 0.49
128 220 0.29
129 3 0.00
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.20
Consensus pattern (126 bp):
GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTC
GGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:21528 original size:23 final size:23
Alignment explanation
Indices: 21502--21547 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
21492 GCGTAACTGC
21502 TGTATAGTAATAGGGTGCCCGAA
1 TGTATAGTAATAGGGTGCCCGAA
* *
21525 TGTATAGTTATAGGGTGCGCGAA
1 TGTATAGTAATAGGGTGCCCGAA
21548 GCCCACCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (23 bp):
TGTATAGTAATAGGGTGCCCGAA
Found at i:27938 original size:43 final size:43
Alignment explanation
Indices: 27848--28019 Score: 184
Period size: 43 Copynumber: 4.0 Consensus size: 43
27838 TCCCCACAGC
* * * * * *
27848 CGGCACCTTGGTGGCTGGGATGCGCGGGAGCCTCGCGTAGCAC
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
* *
27891 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGTAT
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
* * * *
27934 CGGCACCTAGGAGG-TCGGATGTGCCAGAGCCTCGAGCACCAT
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
* * * * *
27976 CTGCACCTTGGTGCCTCGGATGTGCGGGAGACTCGAGCACCAT
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
28019 C
1 C
28020 CGCAACTTTG
Statistics
Matches: 107, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 34 0.32
43 73 0.68
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (43 bp):
CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
Found at i:27964 original size:42 final size:43
Alignment explanation
Indices: 27891--28000 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 43
27881 CGCGTAGCAC
* * *
27891 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGTAT
1 CGGCACCTAGGAGGCTCGGATGTGCCAGAGCCCCGAGCAGTAT
* **
27934 CGGCACCTAGGAGG-TCGGATGTGCCAGAGCCTCGAGCACCAT
1 CGGCACCTAGGAGGCTCGGATGTGCCAGAGCCCCGAGCAGTAT
* * * *
27976 CTGCACCTTGGTGCCTCGGATGTGC
1 CGGCACCTAGGAGGCTCGGATGTGC
28001 GGGAGACTCG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 34 0.61
43 22 0.39
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (43 bp):
CGGCACCTAGGAGGCTCGGATGTGCCAGAGCCCCGAGCAGTAT
Found at i:28597 original size:43 final size:42
Alignment explanation
Indices: 28491--28615 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 42
28481 AGAGCCTCAA
* *
28491 GCACCATGGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCAGATGTGCGGGAGCCTCGAGCACCATCG
* *
28534 GCACCTTGGTACTCATATGTGCGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCAGATGTGCGGGAGCCTCGAG-CACCATCG
*
28576 GCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
1 GC-ACCTTGGTGCTCAGATGTGCGGGAGCCTCGAGCACCA
28616 AAGCTGAAGT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 29 0.40
43 41 0.57
44 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.18
Consensus pattern (42 bp):
GCACCTTGGTGCTCAGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:29001 original size:43 final size:43
Alignment explanation
Indices: 28964--30020 Score: 1237
Period size: 43 Copynumber: 24.8 Consensus size: 43
28954 GGAGCACATG
* *
28964 GCAGCATCGGCACCTTAGTGGCTCGGGTGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29007 GCACCATCGGCACCTTGGT-GCTTGGATGTGAGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
29049 CCACCATCGTCACCTTGGTGGCTCAGATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
29092 GTAGCATCGGCACCTTGGT-GCTTGGATGTACGGGAGTCTCCA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29134 GCAGAACCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
29177 GCCGTATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
29219 GCCGCATCGGTACCTTGATGGCTCAGATGTGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29262 GCAGCATCGGCATCTTGGT-CCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
29304 GCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGACC-CGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG-CCTCGA
* ** ** * *
29347 GGAGCATCAACACCTTACT-GCTTGGATGTGCGGGAGCCTTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
29389 GCCA-CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
29432 GCACCGTCGGCAGCTTGGT-GCTGGGATGTGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
29474 GCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
29517 GCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
29560 GCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* ** * *
29603 GCACCATCGGCACCTTGGT-GCTTAGATGTACGTGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29645 GCAG-AACTGGCACCTTGGT-GCTGGGATATGCGGGAGCCTCGA
1 GCAGCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
29687 GTAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29730 GCAGCATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
29772 GCATCATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
29815 GCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
29857 CCAGTATCGGCACCTTGGTGGCTCAGATGTGCGGAAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
29900 CCAGCATCGGCACCTTGGGGGCTCGAATGTACGGGAGCCTTG-
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29942 GACACCATCGGCAACCTTGGT-GCTTGGATGTGCGAGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
29986 GCACCACCGGCACCTTGGTGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTGGCT-CGGATGTGCGGG
30021 CTAAAGGAAA
Statistics
Matches: 854, Mismatches: 140, Indels: 40
0.83 0.14 0.04
Matches are distributed among these distances:
41 4 0.00
42 358 0.42
43 482 0.56
44 10 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:29085 original size:85 final size:85
Alignment explanation
Indices: 28964--30020 Score: 1268
Period size: 85 Copynumber: 12.4 Consensus size: 85
28954 GGAGCACATG
* *
28964 GCAGCATCGGCACCTTAGTGGCTCGGGTGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
29029 TGGATGTGAGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * * *
29049 CCACCATCGTCACCTTGGTGGCTCAGATATGCGGGAGACTCGAGTAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
29114 TGGATGTACGGGAGTCTCCA
66 TGGATGTGCGGGAGCCTCGA
* * * *
29134 GCAGAACCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGC-CGTATCGGCACCTTGGTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGC
* *
29198 TGGGATGTGCGGGAGCCCCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * * * * *
29219 GCCGCATCGGTACCTTGATGGCTCAGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTGGTCCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
29284 TGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * ** **
29304 GCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGACC-CGAGGAGCATCAACACCTTACTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG-CCTCGAGCACCATCGGCACCTTGGTGC
*
29368 TTGGATGTGCGGGAGCCTTGA
65 TTGGATGTGCGGGAGCCTCGA
* * *
29389 GCCA-CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGC
1 G-CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
* *
29453 TGGGATGTGCGGGAGACTCGA
65 TTGGATGTGCGGGAGCCTCGA
*
29474 GCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
29539 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
*
29560 GCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
29625 TAGATGTACGTGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * *
29645 GCAG-AACTGGCACCTTGGT-GCTGGGATATGCGGGAGCCTCGAGTAGCATCAGCACCTTGGTGG
1 GCAGCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-G
*
29708 CTCGGATGTGCGGGAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * * * *
29730 GCAGCATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCATCATCGGCACATTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
29794 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * **
29815 GCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGACCAGTATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
** *
29879 TCAGATGTGCGGAAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * *
29900 CCAGCATCGGCACCTTGGGGGCTCGAATGTACGGGAGCCTTG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
*
29964 CTTGGATGTGCGAGAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * *
29986 GCACCACCGGCACCTTGGTGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTGGCT-CGGATGTGCGGG
30021 CTAAAGGAAA
Statistics
Matches: 833, Mismatches: 125, Indels: 27
0.85 0.13 0.03
Matches are distributed among these distances:
84 43 0.05
85 624 0.75
86 157 0.19
87 9 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAGCCTCGA
Found at i:29646 original size:383 final size:382
Alignment explanation
Indices: 28964--30020 Score: 1327
Period size: 383 Copynumber: 2.8 Consensus size: 382
28954 GGAGCACATG
** * * *
28964 GCAGCATCGGCACCTTAGTGGCTCGGGTGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
1 GCAGCATCAACACCTTACT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
* * * * ** *
29028 TTGGATGTGAGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCAGATATGCGGGAGACTCGAG
65 TCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGACTCGAG
* * * * * *
29093 TAGCATCGGCACCTTGGT-GCTTGGATGTACGGGAGTCTCCAGCAGAACCGGCACCTTGGTGGCT
129 CAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCT
* * * * * *
29157 CAGATGTGCGGGAGCCTCGAGCCGTATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-
194 CGGATGTGCGGGAGCCTCGAGCAGCATCGGAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
* * * * * * *
29221 CGCATCGGTACCTTGATGGCTCAGATGTGCGGGAGACTCGAGCAGCA-TCGGCATCTTGGTCCTT
259 C-CATCGGCACCTTGGT-GCTTAGATGTACGGGAGACTCGAGCAGAACT-GGCACCTTGGTCCTG
* * *
29285 GGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGACC-CGA
321 GGATATGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAG-CCTCGA
* * *
29347 GGAGCATCAACACCTTACTGCTTGGATGTGCGGGAGCCTTGAGC-CACATCGGTACCTTGGTGGC
1 GCAGCATCAACACCTTACTGCTTGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGC
* *
29411 TCGGATGTGCGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGCTGGGATGTGCGGGAGACTCGAGC
65 TCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGACTCGAGC
*
29476 AGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTC
130 AGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTC
*
29541 GGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCA
195 GGATGTGCGGGAGCCTCGAGCAGCATCGGAACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
* * *
29606 CCATCGGCACCTTGGTGCTTAGATGTACGTGAGCCTCGAGCAGAACTGGCACCTTGGTGCTGGGA
259 CCATCGGCACCTTGGTGCTTAGATGTACGGGAGACTCGAGCAGAACTGGCACCTTGGTCCTGGGA
*
29671 TATGCGGGAGCCTCGAGTAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
324 TATGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** ** * * * *
29730 GCAGCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCATCATCGGCACATTGGTGGCT
1 GCAGCATCAACACCTTACTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCT
* * *
29795 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCA
66 CGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGACTCGAGCA
* ** * * *
29860 GTATCGGCACCTTGGTGGCTCAGATGTGCGGAAGCCTCGACCAGCATCGGCACCTTGGGGGCTCG
131 GCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
* * * * * *
29925 AATGTACGGGAGCCTTG-GACACCATCGGCAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCA
196 GATGTGCGGGAGCCTCGAG-CAGCATCGG-AACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
* * *
29989 CCACCGGCACCTTGGTGCCTACGATGTGCGGG
259 CCATCGGCACCTTGGTGCTTA-GATGTACGGG
30021 CTAAAGGAAA
Statistics
Matches: 585, Mismatches: 78, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
381 1 0.00
382 77 0.13
383 453 0.77
384 53 0.09
385 1 0.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (382 bp):
GCAGCATCAACACCTTACTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCT
CGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGACTCGAGCA
GCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
GATGTGCGGGAGCCTCGAGCAGCATCGGAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
ATCGGCACCTTGGTGCTTAGATGTACGGGAGACTCGAGCAGAACTGGCACCTTGGTCCTGGGATA
TGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:37493 original size:43 final size:43
Alignment explanation
Indices: 37445--37609 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
37435 CCCACAGCCA
37445 GCACCTTGGTGGCTCAGATGCGCGGGAGCCTCGCA-CAGCACCG
1 GCACCTTGGTGGCTCAGATGCGCGGGAGCCTCG-AGCAGCACCG
* * *
37488 GCACCTTGGCGGCTC-GAATGCGTC-GGAGCCCCGAGCAGCATCG
1 GCACCTTGGTGGCTCAG-ATGCG-CGGGAGCCTCGAGCAGCACCG
* * * * *
37531 GCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGCA-CTATCC-
1 GCACCTTGGTGGCTCAGATGCGCGGGAGCCTCGAGCAGC-A-CCG
* **
37573 GCACCTTGGTGCCTCAGATGTACGGGAGCCTCGAGCA
1 GCACCTTGGTGGCTCAGATGCGCGGGAGCCTCGAGCA
37610 CCATCCGCAA
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
41 2 0.02
42 30 0.30
43 67 0.67
44 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.34, T:0.16
Consensus pattern (43 bp):
GCACCTTGGTGGCTCAGATGCGCGGGAGCCTCGAGCAGCACCG
Found at i:38152 original size:42 final size:42
Alignment explanation
Indices: 38080--38246 Score: 201
Period size: 42 Copynumber: 3.9 Consensus size: 42
38070 AGAGCCTTAA
* * * *
38080 GCACCTTAGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCG
38123 GCACCTTGGTGCTCGGATGTGCAGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAG-CACCATCG
* * *
38165 GCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACTATCG
1 GC-ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCG
* * * *
38208 ACACGTTGGTGCTAGGATGTGCAGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCA
38247 AAGCTGAAGT
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 60 0.56
43 46 0.43
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCG
Found at i:38246 original size:85 final size:86
Alignment explanation
Indices: 38082--38239 Score: 228
Period size: 85 Copynumber: 1.8 Consensus size: 86
38072 AGCCTTAAGC
* * *
38082 ACCTTAGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCAG
1 ACCTTAGTGGCTCAGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTGCAG
*
38147 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
* * * * *
38168 ACCTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACTATCGACACGTTGGTGCTAGGATGTGCAG
1 ACCTTAGTGGCTCAGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTGCAG
38232 AAGCCTCG
66 AAGCCTCG
38240 AGCACCAAAG
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
85 56 0.89
86 7 0.11
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTAGTGGCTCAGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTGCAG
AAGCCTCGGCCACCATCGGCA
Found at i:41837 original size:42 final size:42
Alignment explanation
Indices: 41755--42626 Score: 921
Period size: 43 Copynumber: 20.8 Consensus size: 42
41745 GGAGCACATG
*
41755 GCAGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
41798 GCACCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
41840 CCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
41883 GCAGCATCGGCACCTTGGTGCTTGGATGTACGGGAGTCTTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
41925 GCAGAACCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
41968 GCAGCATCGGCATCTTGGTGCTTGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
42010 GCAGCATCGGCACCTTGGTGGCTCGGATCTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
*
42053 GGAGCATCGGCACC-T--TG--C-GATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
42088 GACA-CTGTCGGCAACTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 G-CAGC-ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * *
42132 GCACCGTCGGCACCTTGGTGCTTGGATGTGTGGCAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
42174 GCACCATCGGCACCCTGGTGGCTCGGATGTGCGGGAGCCTGGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
42217 GCACCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
42259 GCAGAACCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
42301 GCAGCACCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCTA
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * * *
42344 TCAGCATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
42386 GCACCATCGGTACATTGGTGGCTCGGATGTGAGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
42429 GCAGCATCGGCACCTTGGTGTTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
42471 CCAGCATCGG-----T-G-GCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
42506 CCAGCATCGGTACATTGGGGGCTCGGATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
42548 GACACCATCGGCAACCTTGATGCTTGGATGTGCGGGAACCTCGA
1 G-CAGCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
42592 GCACCATCGGCACCTTGGTGCCTAGGATGTACGGG
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGG
42627 CTAAAGGAAA
Statistics
Matches: 701, Mismatches: 99, Indels: 58
0.82 0.12 0.07
Matches are distributed among these distances:
35 34 0.05
36 24 0.03
37 3 0.00
39 2 0.00
40 3 0.00
42 295 0.42
43 333 0.48
44 7 0.01
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:41876 original size:85 final size:85
Alignment explanation
Indices: 41755--42626 Score: 999
Period size: 85 Copynumber: 10.4 Consensus size: 85
41745 GGAGCACATG
*
41755 GCAGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
41820 TGGATGTACGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * *
41840 CCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
41905 TGGATGTACGGGAGTCTTGA
66 TGGATGTGCGGGAGCCTCGA
* * * * *
41925 GCAGAACCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCATCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
41990 TGGATGTGTGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * *
42010 GCAGCATCGGCACCTTGGTGGCTCGGATCTGCGGGAGCCCCGAGGAGCATCGGCACC-T--TGC-
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
42071 --GATGTGCGGGAGCCTCG-
66 TGGATGTGCGGGAGCCTCGA
* * *
42088 GACA-CTGTCGGCAACTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCGTCGGCACCTTGGTG
1 G-CAGC-ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG
* *
42152 CTTGGATGTGTGGCAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * *
42174 GCACCATCGGCACCCTGGTGGCTCGGATGTGCGGGAGCCTGGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
42239 TGGATGTACGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * *
42259 GCAGAACCGGTACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCACCGGCACCTTGGTGCC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-C
* *
42323 TCGGATGTGCGGGAGCCTCTA
65 TTGGATGTGCGGGAGCCTCGA
* * * * * * *
42344 TCAGCATCGGTACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCACCATCGGTACATTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
* *
42408 TCGGATGTGAGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * *
42429 GCAGCATCGGCACCTTGGT-GTTGGGATGTGCGGGAGCCTCGACCAGCATCGG-----T-G-GCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
42486 GGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * *
42506 CCAGCATCGGTACATTGGGGGCTCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTGATG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
*
42570 CTTGGATGTGCGGGAACCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * * *
42592 GCACCATCGGCACCTTGGTGCCTAGGATGTACGGG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGG
42627 CTAAAGGAAA
Statistics
Matches: 666, Mismatches: 99, Indels: 43
0.82 0.12 0.05
Matches are distributed among these distances:
77 36 0.05
78 30 0.05
79 64 0.10
80 2 0.00
82 6 0.01
84 41 0.06
85 436 0.65
86 51 0.08
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAGCCTCGA
Found at i:42496 original size:35 final size:35
Alignment explanation
Indices: 42450--42516 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
42440 ACCTTGGTGT
42450 TGGGATGTGCGGGAGCCTCGACCAGCATCGGTGGC
1 TGGGATGTGCGGGAGCCTCGACCAGCATCGGTGGC
42485 TGGGATGTGCGGGAGCCTCGACCAGCATCGGT
1 TGGGATGTGCGGGAGCCTCGACCAGCATCGGT
42517 ACATTGGGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.15, C:0.25, G:0.42, T:0.18
Consensus pattern (35 bp):
TGGGATGTGCGGGAGCCTCGACCAGCATCGGTGGC
Found at i:49987 original size:43 final size:43
Alignment explanation
Indices: 49939--50058 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
49929 CCACAGCCGG
* *
49939 CACCTTGGTGGCTCGGATGCGCGGGAGCCTCGCGCAGCAACGA
1 CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAACGA
* * * **
49982 CACCTTGGTGGCACGGATGCGCCGGAGCCCCGAGTAGCATTGA
1 CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAACGA
* * *
50025 CACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGC
1 CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGC
50059 GTTGGGCTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 19 0.30
43 45 0.70
ACGTcount: A:0.17, C:0.31, G:0.37, T:0.15
Consensus pattern (43 bp):
CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAACGA
Found at i:50585 original size:43 final size:42
Alignment explanation
Indices: 50493--50659 Score: 210
Period size: 42 Copynumber: 3.9 Consensus size: 42
50483 AGAGCCTCAA
* * * *
50493 GCACCTTGGTGGCTCGGATATGTGGGAGCCTCGAGTAGCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
*
50536 GCACCTTGGTGCTCGGATGTACGGGAGCCTC-AGCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* *
50578 GCAACCTTGCTGCTCGGATGTGCGGGAGCCTCGACCACCATCG
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * *
50621 ACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
50660 AAGCTGAAGT
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
41 2 0.02
42 59 0.55
43 46 0.43
44 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:50650 original size:85 final size:86
Alignment explanation
Indices: 50495--50659 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 86
50485 AGCCTCAAGC
* * ** * * *
50495 ACCTTGGTGGCTCGGATATGTGGGAGCCTCGAGTAGCATCGGCACCTTGGTGCTCGGATGTACGG
1 ACCTTGCTGGCTCGGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTACGG
*
50560 GAGCCTC-AGCCACCATCGGCA
66 AAGCCTCGAG-CACCATCGGCA
* *
50581 ACCTTGCT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTGCGG
1 ACCTTGCTGGCTCGGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTACGG
50645 AAGCCTCGAGCACCA
66 AAGCCTCGAGCACCA
50660 AAGCTGAAGT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 59 0.87
86 9 0.13
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTGCTGGCTCGGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTACGG
AAGCCTCGAGCACCATCGGCA
Found at i:50895 original size:24 final size:24
Alignment explanation
Indices: 50868--50924 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
50858 GCCGGTTAGG
50868 TTCCCGGTAGTGCTCCGGCGATCC
1 TTCCCGGTAGTGCTCCGGCGATCC
**
50892 TTCCCGGCGGTGCTCCGGCGATCC
1 TTCCCGGTAGTGCTCCGGCGATCC
*
50916 ATCCCGGTA
1 TTCCCGGTA
50925 TATAGAAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.09, C:0.39, G:0.30, T:0.23
Consensus pattern (24 bp):
TTCCCGGTAGTGCTCCGGCGATCC
Found at i:51095 original size:42 final size:42
Alignment explanation
Indices: 51018--51900 Score: 994
Period size: 43 Copynumber: 20.7 Consensus size: 42
51008 GGAGTACATG
* * *
51018 GCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* * *
51061 GCACCTTCGGCACCTTGGTGCTTGGATGTCCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * * * * * *
51103 CCACCATCGTCACCTTGGTGGCTCGCATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* ** *
51146 GCAGCATCGGCACCTTCGTGCTTGGATGTATGGGAGTCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * * **
51188 GCAGAACCGGTACCTTGGTGGCTCAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* *
51231 GCAGCATCAGCACCTTGGTGGTTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTT-GGATGTGCGGGAGCCTCGA
* * * *
51274 ACCGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * * * *
51316 GCCGTATCGGCACCTCGGTGTCTTGGATGTGCGGGAGACTTGA
1 GCAGCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGA
* *
51359 GCAGCATCGGCATCTTGGTGCTTGGATGTGCGAGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
** * *
51401 GCAGCATCGGCACCTTGGTGGCACGGATGTGCAGGAGCCCCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* * * *
51444 GGACCATCGGCACCTTGGTGCTTAGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
51486 GCAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTGGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* *
51529 GCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * * * *
51571 GCAGAACCGGCACCATGGTGCTGGGATGTGCGGAAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* *
51613 GCAGCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * * *
51655 GCACCATCAGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
*
51698 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
51740 CCAGCATCGGCACCTTTGTAGCTAGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* * * *
51783 CCAGCATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-
1 GCAGCATCGGCACCTT-GGTGCTTGGATGTGCGGGAGCCTCGA
* *
51825 GACACCATCGGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
51869 GCACCATGGGCACCTTGGTGCCTAGGATGTGC
1 GCAGCATCGGCACCTTGGTG-CTTGGATGTGC
51901 AGGCTAAAGG
Statistics
Matches: 703, Mismatches: 124, Indels: 26
0.82 0.15 0.03
Matches are distributed among these distances:
42 331 0.47
43 365 0.52
44 7 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
Found at i:51136 original size:85 final size:84
Alignment explanation
Indices: 51018--51900 Score: 994
Period size: 85 Copynumber: 10.4 Consensus size: 84
51008 GGAGTACATG
* * * *
51018 GCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCTTCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
*
51083 TGGATGTCCGGGAGCCTCGA
65 TGGATGTGCGGGAGCCTCGA
* * * * * * *
51103 CCACCATCGTCACCTTGGTGGCTCGCATATGCGGGAGACTCGAGCAGCATCGGCACCTTCGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
** *
51168 TGGATGTATGGGAGTCTCGA
65 TGGATGTGCGGGAGCCTCGA
* * * * * *
51188 GCAGAACCGGTACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
51253 TCGGATGTGCGGGAGCCTCGA
65 T-GGATGTGCGGGAGCCTCGA
* * * * * * *
51274 ACCGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCCGTATCGGCACCTCGGTGTCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CT
* *
51339 TGGATGTGCGGGAGACTTGA
65 TGGATGTGCGGGAGCCTCGA
* * * *
51359 GCAGCATCGGCATCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGGCA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
* * *
51424 CGGATGTGCAGGAGCCCCGA
65 TGGATGTGCGGGAGCCTCGA
* * ** * *
51444 GGACCATCGGCACCTTGGTGCTTAGATGTGTGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
* *
51509 CGGATGTGCGGGAGCCTGGA
65 TGGATGTGCGGGAGCCTCGA
* * * * * * *
51529 GCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCATGGTGCTG
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
*
51594 GGATGTGCGGAAGCCTCGA
66 GGATGTGCGGGAGCCTCGA
* * * * * *
51613 GCAGCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCAGCACATTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
*
51678 CGGATGTGCGGGAGCCTCGA
65 TGGATGTGCGGGAGCCTCGA
* * *
51698 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTTGTAGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
*
51763 AGGATGTGCGGGAGCCTCGA
65 TGGATGTGCGGGAGCCTCGA
* * * *
51783 CCAGCATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTG
*
51847 CTTGGATGTGTGGGAGCCTCGA
63 CTTGGATGTGCGGGAGCCTCGA
* * *
51869 GCACCATGGGCACCTTGGTGCCTAGGATGTGC
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGC
51901 AGGCTAAAGG
Statistics
Matches: 671, Mismatches: 119, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
84 71 0.11
85 486 0.72
86 107 0.16
87 7 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (84 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
GGATGTGCGGGAGCCTCGA
Found at i:61417 original size:43 final size:43
Alignment explanation
Indices: 61369--61536 Score: 187
Period size: 43 Copynumber: 3.9 Consensus size: 43
61359 CTCCCCACAG
*
61369 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGCGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
* * *
61412 CCGGCACCTTGGTTGCTCGGATGCGCTGGAGCCCCGAGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
* * * * * ** *
61455 TCGGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAATACCA
1 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
* *
61497 TCC-GCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCA
1 -CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCA
61537 CCATCTGCAA
Statistics
Matches: 102, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 30 0.29
43 72 0.71
ACGTcount: A:0.15, C:0.33, G:0.36, T:0.17
Consensus pattern (43 bp):
CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
Found at i:62112 original size:42 final size:43
Alignment explanation
Indices: 62027--62131 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 43
62017 AGCTCAGATA
* * *
62027 TGCGGGAGCCTCGGCCACCATCGGCAACCTTAGTGCTCGGATG
1 TGCGGGAGCCTCGACCACCATCGACAACCTTAGTGCTAGGATG
*
62070 TGCGGGAGCCTCGACCACCATCGAC-ACCTTGGTGCTAGGATG
1 TGCGGGAGCCTCGACCACCATCGACAACCTTAGTGCTAGGATG
* * * *
62112 TGTGGAAGCCTTGAGCACCA
1 TGCGGGAGCCTCGACCACCA
62132 AATCTGAAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
42 31 0.57
43 23 0.43
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (43 bp):
TGCGGGAGCCTCGACCACCATCGACAACCTTAGTGCTAGGATG
Found at i:63552 original size:21 final size:21
Alignment explanation
Indices: 63526--63570 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
63516 ATATAGACTC
63526 CAAGGTTAGACTGGATGACAA
1 CAAGGTTAGACTGGATGACAA
63547 CAAGGTTAGACTGGATGACAA
1 CAAGGTTAGACTGGATGACAA
63568 CAA
1 CAA
63571 AACCATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.16, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGTTAGACTGGATGACAA
Found at i:65751 original size:36 final size:37
Alignment explanation
Indices: 65704--65776 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
65694 CCACGTATGC
65704 TATGTCGGTTTTCTTGGCACCCAAA-GCATTATTGAT
1 TATGTCGGTTTTCTTGGCACCCAAAGGCATTATTGAT
65740 TATGTCGGTTTTCTTGGCACCCAAAGGCATTATTGAT
1 TATGTCGGTTTTCTTGGCACCCAAAGGCATTATTGAT
65777 GACATCCAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 25 0.69
37 11 0.31
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (37 bp):
TATGTCGGTTTTCTTGGCACCCAAAGGCATTATTGAT
Found at i:67942 original size:42 final size:41
Alignment explanation
Indices: 67795--67955 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 41
67785 AGAGCCTCAA
* * *
67795 GCACCTTGGTGGCTCA-GATATGCGGGAGCCTCGAGCAGCATC
1 GCACCTTGGT-GCT-AGGATGTGCGGGAGCCTCGACCACCATC
* * * *
67837 GGCACCTTGGTGCTCGGATGTGTGGCAGCCTCGGCCACCATC
1 -GCACCTTGGTGCTAGGATGTGCGGGAGCCTCGACCACCATC
*
67879 TGCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATC
1 -GC-ACCTTGGTGCTAGGATGTGCGGGAGCCTCGACCACCATC
*
67922 GACACCTTGGTGCTAGGATGTGCGGAAGCCTCGA
1 G-CACCTTGGTGCTAGGATGTGCGGGAGCCTCGA
67956 GCACAAAAGC
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
42 55 0.54
43 47 0.46
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (41 bp):
GCACCTTGGTGCTAGGATGTGCGGGAGCCTCGACCACCATC
Found at i:68615 original size:24 final size:24
Alignment explanation
Indices: 68588--68664 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
68578 CCGGTTAGGT
68588 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
68612 TCCCGGCGGTGCTCTGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
* * *
68636 T-CCTGCGGCGCTCCGGTGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
68659 TCCCGG
1 TCCCGG
68665 TATATAGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 19 0.41
24 27 0.59
ACGTcount: A:0.08, C:0.40, G:0.32, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:68797 original size:43 final size:43
Alignment explanation
Indices: 68760--68974 Score: 254
Period size: 42 Copynumber: 5.0 Consensus size: 43
68750 GGAGCACATG
68760 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* ** *
68803 GCACCATCGGCACCTTGGT-GCTTAGATGTGCAGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * * * *
68845 CCACCATCGTCACCTTGATGCCACGGATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
68888 GCAGCATCGGCACCTTGGT-GCTTGGATGTACGGGAGGCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
68930 GCAGAACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
68973 GC
1 GC
68975 CCCCACGGGG
Statistics
Matches: 140, Mismatches: 30, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
42 70 0.50
43 70 0.50
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.19
Consensus pattern (43 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:68872 original size:85 final size:85
Alignment explanation
Indices: 68764--68974 Score: 278
Period size: 85 Copynumber: 2.5 Consensus size: 85
68754 CACATGGCAG
68764 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAGA
*
68829 TGTGCAGGAGCCTCGACCAC
66 TGTACAGGAGCCTCGACCAC
* * * * * * * *
68849 CATCGTCACCTTGATGCCACGGATATGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAGA
* * * *
68914 TGTACGGGAGGCTCGAGCAG
66 TGTACAGGAGCCTCGACCAC
* * *
68934 AACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC
68975 CCCCACGGGG
Statistics
Matches: 104, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
85 104 1.00
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.19
Consensus pattern (85 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAGA
TGTACAGGAGCCTCGACCAC
Found at i:69287 original size:42 final size:42
Alignment explanation
Indices: 69220--70216 Score: 1156
Period size: 42 Copynumber: 23.5 Consensus size: 42
69210 NNNNNNNNNC
*
69220 CCTTGGTGCCTCGGATTTGCGGGAGCCTCGAGCACCATCGGCA
1 CCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
69263 CCTTGGTGCTTGGATGTGCGGGAGCCGCGACCACTATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
69305 CCTTAGTGGCTCGGATATGCGGGAGACTCGAGCAGCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * **
69348 CCTTGCTGCTTGGATGTGCGGGAGCCTCGAACAGAATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* *
69390 CCTTGGTGGCTCAGATGTGC-GGAGCCTTGAGC-CGCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCA
* * *
69432 CCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-CGTATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCA
* * *
69474 CCTTGGTGGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * * * *
69517 TCTTAGTGCTTGGATGTGGGGGAGCCTCGAGGAGCATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
69559 CCTTGCTGTTGGGATGTGCGGGAGCCTCGAGCCCCATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* *
69601 CCTTAGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
** * * * * *
69644 GATTGGTGCTGGGATGTGTGGGAGACTCGAGCAGCATCGGTA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
69686 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* *
69729 CCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
69771 CCTTGGTGGCTCGGATGTACGAGAGCCTGGAGCACCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* **
69814 CCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
69856 CCTTGGTGCTGGGATGTGCGGGAGCCTCGAACAGCATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* *
69898 CCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGTA
1 CCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
69941 CCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCGGTA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* *
69983 CCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
70026 CCTTGGGGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
70068 CCTTTGTAGCTAGGATGTGCGGGAGCCTCGACCAGCATCGGCA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* *
70111 CCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACCATCGGCAA
1 CCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-A
* * *
70155 CCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATGGGCA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
*
70197 CCTTGGTGCCTAGGATGTGC
1 CCTTGGTG-CTCGGATGTGC
70217 AGGCTAAAGG
Statistics
Matches: 818, Mismatches: 119, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
41 10 0.01
42 424 0.52
43 377 0.46
44 7 0.01
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (42 bp):
CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
Found at i:69372 original size:85 final size:85
Alignment explanation
Indices: 69220--70216 Score: 1191
Period size: 85 Copynumber: 11.7 Consensus size: 85
69210 NNNNNNNNNC
* * * *
69220 CCTTGGTGCCTCGGATTTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* * *
69285 AGCCGCGACCACTATCGGCA
66 AGCCTCGAGCACCATCGGCA
* * * * *
69305 CCTTAGTGGCTCGGATATGCGGGAGACTCGAGCAGCATCGGCACCTTGCTGCTTGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* **
69370 AGCCTCGAACAGAATCGGCA
66 AGCCTCGAGCACCATCGGCA
* * * *
69390 CCTTGGTGGCTCAGATGTGC-GGAGCCTTGAGCCGCATCGGCACCTTGGTGCTGGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* *
69454 AGCCCCGAGC-CGTATCGGCA
66 AGCCTCGAGCAC-CATCGGCA
* * * * * *
69474 CCTTGGTGGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTAGTGCTTGGATGTGGGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* *
69539 AGCCTCGAGGAGCATCGGCA
66 AGCCTCGAGCACCATCGGCA
* * * ** * *
69559 CCTTGCT-GTTGGGATGTGCGGGAGCCTCGAGCCCCATCGGCACCTTAGTGGCTCAGATGTGCGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
69623 GAGCCTCGAGCACCATCGGCA
65 GAGCCTCGAGCACCATCGGCA
** * * * *
69644 GATTGGT-GCTGGGATGTGTGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCGGATGTGCGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
69708 GAGCCTCGAGCACCATCGGCA
65 GAGCCTCGAGCACCATCGGCA
* * * * *
69729 CCTTGGT-GCTTGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTACGA
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
*
69793 GAGCCTGGAGCACCATCGGCA
65 GAGCCTCGAGCACCATCGGCA
* * *
69814 CCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGCTGGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* *
69878 AGCCTCGAACAGCATCGGCA
66 AGCCTCGAGCACCATCGGCA
* * * *
69898 CCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTTGGATGTGGGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* *
69963 AGCCTCGTGCACCATCGGTA
66 AGCCTCGAGCACCATCGGCA
* * *
69983 CCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGGGCTGGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
* *
70048 AGCCTCGACCAGCATCGGCA
66 AGCCTCGAGCACCATCGGCA
* * * * * *
70068 CCTTTGTAGCTAGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGGGGCTCGGATGTGTGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTCGGATGTGCGG
70133 GAGCCTCG-GACACCATCGGCAA
65 GAGCCTCGAG-CACCATCGGC-A
* * * * *
70155 CCTTGGT-GCTTGGATGTGTGGGAGCCTCGAGCACCATGGGCACCTTGGTGCCTAGGATGTGC
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGC
70217 AGGCTAAAGG
Statistics
Matches: 789, Mismatches: 114, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
84 144 0.18
85 563 0.71
86 75 0.10
87 7 0.01
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (85 bp):
CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGG
AGCCTCGAGCACCATCGGCA
Found at i:69486 original size:127 final size:126
Alignment explanation
Indices: 69220--70216 Score: 1089
Period size: 127 Copynumber: 7.8 Consensus size: 126
69210 NNNNNNNNNC
* * *
69220 CCTTGGTGCCTCGGATTTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGC-GG
* * * * * * *
69285 AGCCGCGA-CCACTATCGGCACCTTAGTGGCTCGGATATGCGGGAGACTCGAGCAGCATCGGCA
65 AGCCTCGAGCCGC-ATCGGCACCTTGGT-GCTAGGATGTGCGGGAGCCTCGAGCCGCATCGGCA
* * * ** *
69348 CCTTGCT-GCTTGGATGTGCGGGAGCCTCGAACAGAATCGGCACCTTGGTGGCTCAGATGTGCGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
69412 AGCCTTGAGCCGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCCGTATCGGCA
65 AGCCTCGAGCCGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGCCGCATCGGCA
* * * * * * *
69474 CCTTGGTGGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTAGTGCTTGGATGTGGGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGT-GCGG
** * * * *
69539 AGCCTCGAGGAGCATCGGCACCTTGCTGTTGGGATGTGCGGGAGCCTCGAGCCCCATCGGCA
65 AGCCTCGAGCCGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGCCGCATCGGCA
* * ** * *
69601 CCTTAGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCAGATTGGTGCTGGGATGTGTGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTG-CGG
* * * *
69666 AGACTCGAGCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCA
65 AGCCTCGAGCCGCATCGGCACCTTGGT-GCTAGGATGTGCGGGAGCCTCGAGC-CGCATCGGCA
* * *
69729 CCTTGGT-GCTTGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTACGA
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGATGTGCG-
* * * *
69793 GAGCCTGGAGCAC-CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCGGCA
64 GAGCCTCGAGC-CGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGCCGCATCGGCA
* * *
69856 CCTTGGT-GCTGGGATGTGCGGGAGCCTCGAACAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTCGGATGTGC-G
* * * * * *
69920 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCAC-CATCGGTA
64 GAGCCTCGAGCCGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGC-CGCATCGGCA
* * * *
69983 CCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGGGCTGGGATGTGCGGG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGC-GG
*
70048 AGCCTCGA-CCAGCATCGGCACCTTTGTAGCTAGGATGTGCGGGAGCCTCGA-CCAGCATCGGCA
65 AGCCTCGAGCC-GCATCGGCACCTTGGT-GCTAGGATGTGCGGGAGCCTCGAGCC-GCATCGGCA
* * * *
70111 CCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACCATCGGCAACCTTGGTGCTTGGATGTGTG
1 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTCGGATGTG-C
*
70175 GGAGCCTCGAGCAC-CATGGGCACCTTGGTGCCTAGGATGTGC
63 GGAGCCTCGAGC-CGCATCGGCACCTTGGTG-CTAGGATGTGC
70217 AGGCTAAAGG
Statistics
Matches: 744, Mismatches: 99, Indels: 51
0.83 0.11 0.06
Matches are distributed among these distances:
126 47 0.06
127 449 0.60
128 194 0.26
129 52 0.07
130 1 0.00
131 1 0.00
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (126 bp):
CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGGA
GCCTCGAGCCGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGCCGCATCGGCA
Found at i:75672 original size:43 final size:43
Alignment explanation
Indices: 75624--75791 Score: 196
Period size: 43 Copynumber: 3.9 Consensus size: 43
75614 CTCCCCACAG
* * *
75624 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTTGCGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
75667 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
* * * * * *
75710 TCGGCACCTAGGAGG-TCAGATGTGCCGGAGCCTCGAGCACCA
1 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
* * **
75752 TCC-GCACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCA
1 -CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCA
75792 CCATCCACAA
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 33 0.31
43 74 0.69
ACGTcount: A:0.15, C:0.32, G:0.36, T:0.17
Consensus pattern (43 bp):
CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
Found at i:77391 original size:42 final size:42
Alignment explanation
Indices: 77276--77640 Score: 428
Period size: 42 Copynumber: 8.6 Consensus size: 42
77266 CCTCCAGCAC
* *
77276 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTG
1 GTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
* * *
77318 GTGGCTCGGATATGCGGGAGACTCGAGCACCATCGGCACCTTG
1 GT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
* *
77361 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTG
1 GTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
* * *
77403 GTGGCTCGGATATGCGGGAGACTCGAGCACCATCGGCACCTTG
1 GT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
* * * *
77446 GTGCTTGGATGTACGGGAGTCTCGACCACCATCGTCACCTTG
1 GTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
* * * *
77488 GTGGCTCGGATGTGCGAGAGACTCGAGCAGCATCGGCACCTTG
1 GT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
* * *
77531 GTGCTTGGATGTACGGGAGCCTCGAGCC-GCATCGGCACCTTG
1 GTGCTCGGATGTGCGGGAGCCTCGA-CCACCATCGGCACCTTG
* * * * *
77573 GTGCTGGGATGTGCTGGAGCCCCGAGCC-GCATCGGCACCTTA
1 GTGCTCGGATGTGCGGGAGCCTCGA-CCACCATCGGCACCTTG
77615 GTGGCTCGGATGTGCGGGAGCCTCGA
1 GT-GCTCGGATGTGCGGGAGCCTCGA
77641 AAAGTTATTC
Statistics
Matches: 277, Mismatches: 41, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
42 147 0.53
43 130 0.47
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (42 bp):
GTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTG
Found at i:77419 original size:85 final size:85
Alignment explanation
Indices: 77276--77640 Score: 547
Period size: 85 Copynumber: 4.3 Consensus size: 85
77266 CCTCCAGCAC
77276 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACT
1 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACT
77341 CGAGCACCATCGGCACCTTG
66 CGAGCACCATCGGCACCTTG
77361 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACT
1 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACT
77426 CGAGCACCATCGGCACCTTG
66 CGAGCACCATCGGCACCTTG
* * * *
77446 GTGCTTGGATGTACGGGAGTCTCGACCACCATCGTCACCTTGGTGGCTCGGATGTGCGAGAGACT
1 GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACT
*
77511 CGAGCAGCATCGGCACCTTG
66 CGAGCACCATCGGCACCTTG
* * * * * * *
77531 GTGCTTGGATGTACGGGAGCCTCGAGCC-GCATCGGCACCTTGGT-GCTGGGATGTGCTGGAGCC
1 GTGCTTGGATGTGCGGGAGCCTCGA-CCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGAC
* *
77594 CCGAGC-CGCATCGGCACCTTA
65 TCGAGCAC-CATCGGCACCTTG
*
77615 GTGGCTCGGATGTGCGGGAGCCTCGA
1 GT-GCTTGGATGTGCGGGAGCCTCGA
77641 AAAGTTATTC
Statistics
Matches: 260, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
84 34 0.13
85 224 0.86
86 2 0.01
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (85 bp):
GTGCTTGGATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACT
CGAGCACCATCGGCACCTTG
Found at i:77794 original size:25 final size:25
Alignment explanation
Indices: 77766--77826 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
77756 TCACCGTTTA
77766 GTTTCAATTGATTT-CACCACGCACC
1 GTTTCAATTG-TTTCCACCACGCACC
*
77791 GTTTCAATTGTTTCCACGACGCACC
1 GTTTCAATTGTTTCCACCACGCACC
77816 GTTTCAATTGT
1 GTTTCAATTGT
77827 GAAATTCACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 3 0.09
25 31 0.91
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (25 bp):
GTTTCAATTGTTTCCACCACGCACC
Found at i:85216 original size:25 final size:25
Alignment explanation
Indices: 85186--85266 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
85176 TATCCTCACT
* * *
85186 CGAGCTGTAGATCAGTTTGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
*
85211 CGAGCTATAAATCGGTATGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
* *
85236 CAAGATATAAATCAGTATGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
85261 CGAGCT
1 CGAGCT
85267 GTGGAGTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (25 bp):
CGAGCTATAAATCAGTATGCTCTCA
Found at i:89060 original size:16 final size:16
Alignment explanation
Indices: 89030--89072 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
89020 GAATAGATAT
*
89030 GTGAAT-AACAAATAA
1 GTGAATAAATAAATAA
89045 GTGAATAAATAAATAA
1 GTGAATAAATAAATAA
*
89061 GTGAACAAATAA
1 GTGAATAAATAA
89073 GTGAAAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (16 bp):
GTGAATAAATAAATAA
Found at i:103186 original size:21 final size:21
Alignment explanation
Indices: 103161--103203 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
103151 ATTGTTGAGA
* *
103161 AGGAAGTTGCTGCTGTAGAAG
1 AGGAAGTTACTGCTGAAGAAG
*
103182 AGGAAGTTATTGCTGAAGAAG
1 AGGAAGTTACTGCTGAAGAAG
103203 A
1 A
103204 AGTTGTTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (21 bp):
AGGAAGTTACTGCTGAAGAAG
Found at i:106000 original size:44 final size:45
Alignment explanation
Indices: 105913--106031 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 45
105903 TTGTTATGTG
*
105913 TTATCGTGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGAC
1 TTATCGTGTAAGACCACATCTGAGACGTTGGCATCGACTTGTGAC
105958 TTAT-GTGTAAGACC-CTATCTGAGACAG-TGGCATCGA-TATGTGA-
1 TTATCGTGTAAGACCAC-ATCTGAGAC-GTTGGCATCGACT-TGTGAC
* * * * *
106001 TTA-CATGTAAAACCACGTCTGGGACGATGGC
1 TTATCGTGTAAGACCACATCTGAGACGTTGGC
106032 GTTGTACGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
42 1 0.02
43 24 0.38
44 33 0.52
45 5 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (45 bp):
TTATCGTGTAAGACCACATCTGAGACGTTGGCATCGACTTGTGAC
Found at i:110045 original size:29 final size:29
Alignment explanation
Indices: 109967--110071 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 29
109957 CGAAGCTATT
* *
109967 CCTTTTCATATTC-AAATGTCGTCA-CAGTC
1 CCTTTTCATAATCGATA-GTCGTCACCA-TC
* * *
109996 CCTTTTCATAGTTGATGGTCGTCACCATC
1 CCTTTTCATAATCGATAGTCGTCACCATC
* *
110025 CCTTTTCATAATCGATAGTCG-AAGCTATC
1 CCTTTTCATAATCGATAGTCGTCA-CCATC
*
110054 CCTTTTCATAATTGATAG
1 CCTTTTCATAATCGATAG
110072 CCAAAGCTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
28 1 0.02
29 59 0.94
30 3 0.05
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (29 bp):
CCTTTTCATAATCGATAGTCGTCACCATC
Found at i:110078 original size:29 final size:29
Alignment explanation
Indices: 110022--110091 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
110012 GGTCGTCACC
* *
110022 ATCCCTTTTCATAATCGATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
*
110051 ATCCCTTTTCATAATTGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
110080 ATCCCTTTTCAT
1 ATCCCTTTTCAT
110092 TGGTCGATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:113299 original size:371 final size:371
Alignment explanation
Indices: 112502--113619 Score: 1828
Period size: 371 Copynumber: 3.0 Consensus size: 371
112492 CGGGACTTGT
*
112502 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCACATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* * *
112567 TACTACATAAATGAACTAGTAGATATTGCATGAACGGGAATTGTATGATACTAGACATAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
**
112632 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGTAATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
* *
112697 CTAGTCATTCACTGAGCTTGTTAAGCTCA-CCGGTCCTTTCTTGTAACATCCTAAAAATCA-GGG
196 CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAAT-ATGGG
* *
112760 GTTAGTATAATCGAGTTTGTGAAGCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
260 GTTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
* *
112825 GCATTTTTAGGAAATAAATAAGGTATTGGTTTGTTGGTTAAGTGTTA
325 GCATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
* * * *
112872 CTGAAATGTTATATATGCTTAATTGAATATGTGTTTCATGATATATGTTTGCATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* *
112937 TGCTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACCTAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
* * *
113002 TTATAATCGTACTTAAAAATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
*
113067 CTAGTCATTCACTGAGCTTGTTAAACTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
196 CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
*
113132 TTAGTAGAATCGAGTTTGTGAATCAAGAAAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
261 TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
* * * * *
113197 CGTTTTTAGTAAATAAATGAGATATTTGTTTGTTGGTTAAGTGTTG
326 CATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
** *
113243 GTGAAATAAGATATATGCTTAATTAAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* *
113308 TTCTACATAAGTGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
* *
113373 TTGTAATTGTACTTATATATGGTTGTCTTATGGATGCATGATGATATGTTTGCGATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
*
113438 CTAGTCATTCACTGAGCTTGTTAAGCTCACTCGCTCCCTTCTTGTAACATCCTAAAAAT-TGGGG
196 CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
* * * *
113502 CTTAGTAGAATCGGGGTTGTGAATTAAGAGAGAGTGGTCATGCCTTAATTTTTTAGATTATCTAT
261 -TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
*
113567 GCATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGATTAAGTGTTA
325 GCATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
113614 GTGAAA
1 GTGAAA
113620 CATTCCTTAA
Statistics
Matches: 690, Mismatches: 55, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
370 214 0.31
371 476 0.69
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (371 bp):
GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
CATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
Found at i:118500 original size:70 final size:70
Alignment explanation
Indices: 118398--118554 Score: 208
Period size: 70 Copynumber: 2.2 Consensus size: 70
118388 CAGCTTATCT
*
118398 GACTAGTGCTGGGCACAACTATCGTCGATTAT-CAGATTACTGCTAGGCACAATAATTTGTCGAC
1 GACTAGTGCTGGGCACAACTATCGTCGATTATCCA-ACTACTGCTAGGCACAATAATTTGTCGAC
118462 TCGTTC
65 TCGTTC
* * * * * **
118468 GACTAGTGTTTGGCATAACTATCGTCGGTTATCCAACTAGTGCTAGGCGTAATAATTTGTCGACT
1 GACTAGTGCTGGGCACAACTATCGTCGATTATCCAACTACTGCTAGGCACAATAATTTGTCGACT
* *
118533 CTTTT
66 CGTTC
118538 GACTAGTGCTGGGCACA
1 GACTAGTGCTGGGCACA
118555 CAAATGATCT
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
70 71 0.97
71 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (70 bp):
GACTAGTGCTGGGCACAACTATCGTCGATTATCCAACTACTGCTAGGCACAATAATTTGTCGACT
CGTTC
Found at i:119536 original size:55 final size:53
Alignment explanation
Indices: 119457--119582 Score: 128
Period size: 55 Copynumber: 2.3 Consensus size: 53
119447 ACACGGCCTA
* * *** *
119457 ACACGACCTGGCACACGGGCGTGTGGGGCAACTCAGAGAGTTACAC-GGTCAGG
1 ACACGAGCTGGGACAC-GGCGTGTGACCCAACTCAAAGAGTTACACGGGTCAGG
* * *
119510 CACACGAGCGTGTGACACGGCTGTGTGACCCTACTCAAAGAGTTACACGGGTGAGG
1 -ACACGAGC-TGGGACACGGC-GTGTGACCCAACTCAAAGAGTTACACGGGTCAGG
119566 ACACGAGCTGGGACACG
1 ACACGAGCTGGGACACG
119583 ATCGTTTGTC
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
54 18 0.31
55 35 0.59
56 6 0.10
ACGTcount: A:0.25, C:0.26, G:0.34, T:0.14
Consensus pattern (53 bp):
ACACGAGCTGGGACACGGCGTGTGACCCAACTCAAAGAGTTACACGGGTCAGG
Found at i:122772 original size:149 final size:155
Alignment explanation
Indices: 122507--122907 Score: 486
Period size: 150 Copynumber: 2.6 Consensus size: 155
122497 TAGTGTTTTT
* *
122507 TTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTTATTTTTTTTCCT-ACTATTT
1 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTT--TAACTATTT
* *
122571 CAAAGTAAAAGCTTTAATCTTTAAG--AAAAATAGTGTTTTTTTTAAATAAAAAAAA-GAG-AGT
64 CAAAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTATAAATAAAAAAAAGGAGAAGT
122632 TTAGATTTTGAAAAATAA-AAAAA-A-A
129 TTAGATTTTGAAAAA-AATAAAAATATA
* *
122657 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTTAACTACTTCA
1 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTAACTATTTCA
122722 AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTAT-AAT-AAAAAAAGGAGAAAGTT
66 AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTATAAATAAAAAAAAGGAG-AAGTT
* *
122785 TTGATTTTGAAAAAAATAAAAATATGTTTTT
130 TAGATTTTGAAAAAAATAAAAATA-----TA
* *
122816 TTAAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAACAAATTTTTGA-TTTTTTTTAACTATTT
1 TT--AGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTAACTATTT
* * *
122880 CGAAA-T-AAGGTTTTGATTTTTAAGAAAA
64 C-AAAGTAAAAGTTTTAATCTTTAAGAAAA
122908 TTAATGATTT
Statistics
Matches: 220, Mismatches: 14, Indels: 25
0.85 0.05 0.10
Matches are distributed among these distances:
148 1 0.00
149 37 0.17
150 57 0.26
151 19 0.09
152 22 0.10
153 1 0.00
159 21 0.10
160 17 0.08
161 45 0.20
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.42
Consensus pattern (155 bp):
TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTAACTATTTCA
AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTATAAATAAAAAAAAGGAGAAGTTT
AGATTTTGAAAAAAATAAAAATATA
Found at i:126342 original size:23 final size:23
Alignment explanation
Indices: 126310--126353 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
126300 TAGTTATCAT
*
126310 TAAAATAATAAAGTAAA-TAAACA
1 TAAAAGAATAAAG-AAACTAAACA
126333 TAAAAGAATAAAGAAACTAAA
1 TAAAAGAATAAAGAAACTAAA
126354 AGAGTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (23 bp):
TAAAAGAATAAAGAAACTAAACA
Found at i:126355 original size:17 final size:18
Alignment explanation
Indices: 126323--126361 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
126313 AATAATAAAG
*
126323 TAAATAAACATAAAAGAA
1 TAAAGAAACATAAAAGAA
*
126341 TAAAGAAAC-TAAAAGAG
1 TAAAGAAACATAAAAGAA
126358 TAAA
1 TAAA
126362 AAGAAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (18 bp):
TAAAGAAACATAAAAGAA
Found at i:126793 original size:22 final size:24
Alignment explanation
Indices: 126765--126808 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
126755 TATGGCAAGA
126765 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
126787 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
126809 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:132443 original size:51 final size:51
Alignment explanation
Indices: 132367--132557 Score: 235
Period size: 51 Copynumber: 3.8 Consensus size: 51
132357 NNNNNNNNNN
* *
132367 TAGTAGCCTGCACATAGTACTACACATGTGATCATCACTAACCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAACCGGTACACG
* * * *
132418 TAGTAGCCTGCACATAGTACTACACATGTGATCA-AAGCTATCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTAACCGGTACACG
* * * *
132469 TAGTAGCCTGCACATAGTACCACACATGCGACCTATCA-TTA-TGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTAACCGGTACACG
* *
132519 TAGTAGCCTACACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
132558 TTCACTTTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
49 4 0.03
50 38 0.32
51 76 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAACCGGTACACG
Found at i:132543 original size:101 final size:102
Alignment explanation
Indices: 132367--132549 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 102
132357 NNNNNNNNNN
* * * *
132367 TAGTAGCCTGCACATAGTACTACACATGTGATCATCACTAACCGATACACGTAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACCACACATGCGACCATCACTAACCGATACACGTAGTAGCCTACACA
*
132432 TAGTACTACACATGTGATCAAAGCTATCCGGTACACA
66 TAGTACTACACACGTGATCAAAGCTATCCGGTACACA
* * *
132469 TAGTAGCCTGCACATAGTACCACACATGCGACCTATCA-TTA-TGGTACACGTAGTAGCCTACAC
1 TAGTAGCCTGCACATAGTACCACACATGCGACC-ATCACTAACCGATACACGTAGTAGCCTACAC
132532 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
132550 CCATCACTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
101 36 0.50
102 32 0.44
103 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (102 bp):
TAGTAGCCTGCACATAGTACCACACATGCGACCATCACTAACCGATACACGTAGTAGCCTACACA
TAGTACTACACACGTGATCAAAGCTATCCGGTACACA
Found at i:135347 original size:44 final size:42
Alignment explanation
Indices: 135259--135366 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 42
135249 CTACTATCCC
* *
135259 AGACAGGGTCTTACACGAAAT-TATATACGATGTCAATGTCCT
1 AGACA-GGTCTTACACGAAATCTATATACGATGCCAACGTCCT
135301 AGACATGGTCTTACACGTAAATCTA-ATATCGATGCCAACGTCCT
1 AGACA-GGTCTTACACG-AAATCTATATA-CGATGCCAACGTCCT
135345 AGACGAGGTCTTACACGAAATC
1 AGAC-AGGTCTTACACGAAATC
135367 ACATATTAGA
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
42 16 0.27
43 12 0.20
44 30 0.51
45 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (42 bp):
AGACAGGTCTTACACGAAATCTATATACGATGCCAACGTCCT
Found at i:141387 original size:27 final size:27
Alignment explanation
Indices: 141357--141411 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
141347 ACTATTACAC
141357 ATTGTACCAAATTACCACACAAGACCA
1 ATTGTACCAAATTACCACACAAGACCA
141384 ATTGTACCAAATTACCACACAAGACCA
1 ATTGTACCAAATTACCACACAAGACCA
141411 A
1 A
141412 CTTACTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.29, G:0.07, T:0.18
Consensus pattern (27 bp):
ATTGTACCAAATTACCACACAAGACCA
Found at i:146951 original size:9 final size:9
Alignment explanation
Indices: 146938--146986 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
146928 TTTATTCAAG
146938 TTATTATAA
1 TTATTATAA
*
146947 ATATTAT-A
1 TTATTATAA
146955 TCTA-TATAA
1 T-TATTATAA
146964 TTATTATAA
1 TTATTATAA
146973 TTATTATAA
1 TTATTATAA
146982 TTATT
1 TTATT
146987 TATTCAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 6 0.17
9 29 0.83
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (9 bp):
TTATTATAA
Found at i:147363 original size:17 final size:18
Alignment explanation
Indices: 147327--147367 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
147317 AAAATAATAA
* *
147327 AGTAAATAAACATTAAAG
1 AGTAAAGAAACATAAAAG
147345 AGTAAAGAAAC-TAAAAG
1 AGTAAAGAAACATAAAAG
147362 AGTAAA
1 AGTAAA
147368 AAGAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.63, C:0.05, G:0.15, T:0.17
Consensus pattern (18 bp):
AGTAAAGAAACATAAAAG
Found at i:151450 original size:23 final size:21
Alignment explanation
Indices: 151407--151454 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 21
151397 AGACCCTAAG
151407 TAGAAAAGAAGTATCAATTAGGT
1 TAGAAAAGAAGTA-CAATTA-GT
151430 TAGAAAAGTAAGTA-AACTTAGT
1 TAGAAAAG-AAGTACAA-TTAGT
151452 TAG
1 TAG
151455 GATTAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 7 0.30
23 11 0.48
24 5 0.22
ACGTcount: A:0.48, C:0.04, G:0.21, T:0.27
Consensus pattern (21 bp):
TAGAAAAGAAGTACAATTAGT
Found at i:154251 original size:27 final size:27
Alignment explanation
Indices: 154127--154249 Score: 176
Period size: 27 Copynumber: 4.6 Consensus size: 27
154117 GGCGAACCCT
* *
154127 AAAGGAATGTCTTTGTGACGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
*
154154 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
*
154181 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
*
154208 AAAGGAATCCCTTTG-GGCGCAATATTG
1 AAAGGAATGCCTTTGTGGCGCAATA-TG
*
154235 AAAAGAATGCCTTTG
1 AAAGGAATGCCTTTG
154250 GGAGAATTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
26 9 0.10
27 79 0.90
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGCGCAATATG
Found at i:154386 original size:27 final size:26
Alignment explanation
Indices: 154348--154470 Score: 131
Period size: 27 Copynumber: 4.6 Consensus size: 26
154338 GTTTCGGGAC
154348 CGCAATATGAAAGGAACGCCTTTGTGG
1 CGCAATATGAAAGGAA-GCCTTTGTGG
154375 CGCAATATGAAAGGAATGCCTTTGTGG
1 CGCAATATGAAAGGAA-GCCTTTGTGG
* * * **
154402 CGCAATATGTAAGAGTATCCTTTGTTA
1 CGCAATATGAAAG-GAAGCCTTTGTGG
* *
154429 CGAAATATGAAAGAGTAGCCTTTGTGG
1 CGCAATATGAAAG-GAAGCCTTTGTGG
*
154456 CGAAATATG-AAGGAA
1 CGCAATATGAAAGGAA
154471 TAACCTCTAT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
25 2 0.02
26 3 0.04
27 76 0.92
28 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (26 bp):
CGCAATATGAAAGGAAGCCTTTGTGG
Found at i:154483 original size:27 final size:27
Alignment explanation
Indices: 154429--154483 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
154419 TCCTTTGTTA
* * * *
154429 CGAAATATGAAAGAGTAGCCTTTGTGG
1 CGAAATATGAAAGAATAACCTCTATGG
*
154456 CGAAATATGAAGGAATAACCTCTATGG
1 CGAAATATGAAAGAATAACCTCTATGG
154483 C
1 C
154484 AAACCCTGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (27 bp):
CGAAATATGAAAGAATAACCTCTATGG
Found at i:161301 original size:83 final size:83
Alignment explanation
Indices: 161162--161318 Score: 228
Period size: 83 Copynumber: 1.9 Consensus size: 83
161152 TAAAACTACC
*
161162 GTCACTGAACAAATGATAAACAACAATCTCAGCAACTTTTTAAAGGCAAAGCCAAGCACAAATGA
1 GTCACTGAACAAATGAAAAACAACAATCTCAGCAACTTTTTAAAGGCAAAGCCAAGCACAAATGA
*
161227 AGAATAGAAGCAATTACT
66 AGAACAGAAGCAATTACT
* * * *
161245 GTCACTGAACAAATTAAAAACAACAATCTCAGCAACTTTTTAGAA-GC-ACGACCAAGCATAATT
1 GTCACTGAACAAATGAAAAACAACAATCTCAGCAACTTTTTA-AAGGCAAAG-CCAAGCACAAAT
161308 GAAGAACAGAA
64 GAAGAACAGAA
161319 ACTACCGTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
82 2 0.03
83 62 0.94
84 2 0.03
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (83 bp):
GTCACTGAACAAATGAAAAACAACAATCTCAGCAACTTTTTAAAGGCAAAGCCAAGCACAAATGA
AGAACAGAAGCAATTACT
Found at i:162774 original size:14 final size:14
Alignment explanation
Indices: 162755--162781 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
162745 AGCGGAAAGC
162755 TTTTGCTTAGCTGG
1 TTTTGCTTAGCTGG
162769 TTTTGCTTAGCTG
1 TTTTGCTTAGCTG
162782 TTTCTTCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.26, T:0.52
Consensus pattern (14 bp):
TTTTGCTTAGCTGG
Found at i:164234 original size:20 final size:21
Alignment explanation
Indices: 164183--164235 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
164173 AAATCATTGC
164183 AATATATGTAAAAA-TAATTT
1 AATATATGTAAAAATTAATTT
* *
164203 AA-A-ATATAAAAATTTA-TT
1 AATATATGTAAAAATTAATTT
164221 AATATATGTAAAAAT
1 AATATATGTAAAAAT
164236 AACTTTTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 12 0.44
19 4 0.15
20 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AATATATGTAAAAATTAATTT
Found at i:164369 original size:34 final size:35
Alignment explanation
Indices: 164312--164378 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
164302 CAAACACCAG
*
164312 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAAAATTTTCCAGTAAATCATTTTACAGAAAAGT
*
164347 AAAAAATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAAAATTTTCCAGTAAATCATTTTACAGAAAA
164379 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAAAATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:167181 original size:18 final size:18
Alignment explanation
Indices: 167158--167194 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
167148 ACGGAGGAAG
*
167158 ACGATGGAGATGAAGACA
1 ACGATGGAGACGAAGACA
167176 ACGATGGAGACGAAGACA
1 ACGATGGAGACGAAGACA
167194 A
1 A
167195 ATACAGGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.14, G:0.32, T:0.08
Consensus pattern (18 bp):
ACGATGGAGACGAAGACA
Found at i:170321 original size:19 final size:20
Alignment explanation
Indices: 170277--170375 Score: 121
Period size: 20 Copynumber: 5.0 Consensus size: 20
170267 TTGTACAAGA
*
170277 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
* *
170297 TTGCACTTCGATGCCTTTG-
1 TTGCACTTCGGTGCCTCTGT
170316 TTGCACTTCGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
* * *
170336 TTGCCCTTCGGTGCCTTTAT
1 TTGCACTTCGGTGCCTCTGT
*
170356 TT-CACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
170375 T
1 T
170376 AGTATTTCAA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
19 31 0.47
20 35 0.53
ACGTcount: A:0.06, C:0.27, G:0.22, T:0.44
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTGT
Found at i:170331 original size:39 final size:39
Alignment explanation
Indices: 170276--170375 Score: 155
Period size: 39 Copynumber: 2.6 Consensus size: 39
170266 CTTGTACAAG
170276 ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
1 ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
* * * *
170315 GTTGCACTTCGGTGCCTCTGTTTGCCCTTCGGTGCCTTT
1 ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
*
170354 ATTTCACTTTGGTGCCTCTGTT
1 ATTGCACTTTGGTGCCTCTGTT
170376 AGTATTTCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.07, C:0.27, G:0.22, T:0.44
Consensus pattern (39 bp):
ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
Found at i:172615 original size:19 final size:18
Alignment explanation
Indices: 172575--172615 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
172565 AATATTACAC
*
172575 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
172593 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
172612 ATTT
1 ATTT
172616 TGCTTATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:174946 original size:25 final size:26
Alignment explanation
Indices: 174918--174994 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 26
174908 ATAAGCATAT
*
174918 CGATATATGGCTCTTC-GGAGCTTTC
1 CGATATATGGCTCTTCAGGAGCTTCC
* * *
174943 CGATAAAAGGCTCTTTCATGAGCTTCC
1 CGATATATGGCTC-TTCAGGAGCTTCC
*
174970 CGAT-TAATGGCT-TTCTGGAGCTTCC
1 CGATAT-ATGGCTCTTCAGGAGCTTCC
174995 TATTGGATCG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
25 22 0.54
26 3 0.07
27 16 0.39
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (26 bp):
CGATATATGGCTCTTCAGGAGCTTCC
Found at i:175059 original size:25 final size:25
Alignment explanation
Indices: 175031--175078 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
175021 ATTGGCTCGT
*
175031 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGGTACATGGCTCAC
*
175056 ATGAGCTTCCCGGTATATGGCTC
1 ATGAGCTTCCCGGTACATGGCTC
175079 GAGAGAGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.29
Consensus pattern (25 bp):
ATGAGCTTCCCGGTACATGGCTCAC
Found at i:175092 original size:27 final size:25
Alignment explanation
Indices: 175033--175092 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
175023 TGGCTCGTAT
* *
175033 GAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGGTACATGGCTCACAA
* *
175058 GAGCTTCCCGGTATATGGCTCGAGAGA
1 GAGCTTCCCGGTACATGGCTC-ACA-A
175085 GAGCTTCC
1 GAGCTTCC
175093 TGTTTATGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 19 0.66
26 2 0.07
27 8 0.28
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (25 bp):
GAGCTTCCCGGTACATGGCTCACAA
Found at i:178815 original size:26 final size:26
Alignment explanation
Indices: 178784--178852 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
178774 CATTTCGACC
178784 CACAGCTCGTGTGAGCAGACCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
* *
178810 CACAGCTCGTGTGAGCATACTCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
*
178836 CACAACTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
178853 ATGATGTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACCCATTT
Found at i:185762 original size:17 final size:18
Alignment explanation
Indices: 185718--185762 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
185708 TATGAAATTT
185718 TGATATGAAATGTGAGTA
1 TGATATGAAATGTGAGTA
*
185736 TGAT-TAAAATGATGA-TA
1 TGATATGAAATG-TGAGTA
185753 T-ATATGAAAT
1 TGATATGAAAT
185763 ATATGATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
16 2 0.09
17 14 0.61
18 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (18 bp):
TGATATGAAATGTGAGTA
Found at i:187870 original size:14 final size:14
Alignment explanation
Indices: 187851--187878 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
187841 ACAAAGGAAA
187851 ATCCCGCTTAAGTG
1 ATCCCGCTTAAGTG
187865 ATCCCGCTTAAGTG
1 ATCCCGCTTAAGTG
187879 TAAGGACCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (14 bp):
ATCCCGCTTAAGTG
Found at i:193603 original size:23 final size:23
Alignment explanation
Indices: 193550--193604 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
193540 AAATTTGAAG
* * *
193550 TATTTAGAATTATTTAGTGATAA
1 TATTTAGGATTATTTACTAATAA
193573 TATTTAGGATTATTTACTAATAA
1 TATTTAGGATTATTTACTAATAA
193596 TATTTAGGA
1 TATTTAGGA
193605 AAATTCTAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (23 bp):
TATTTAGGATTATTTACTAATAA
Found at i:196847 original size:23 final size:23
Alignment explanation
Indices: 196821--196870 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
196811 ACATTTTTAT
196821 ATTTACATTTTTTTGAACAATAC
1 ATTTACATTTTTTTGAACAATAC
196844 ATTTACATTTTTTTGAACAATAC
1 ATTTACATTTTTTTGAACAATAC
196867 ATTT
1 ATTT
196871 TTAAATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.12, G:0.04, T:0.50
Consensus pattern (23 bp):
ATTTACATTTTTTTGAACAATAC
Found at i:212590 original size:13 final size:13
Alignment explanation
Indices: 212572--212598 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
212562 AAAAATTTGG
212572 ACATAACTAACTA
1 ACATAACTAACTA
212585 ACATAACTAACTA
1 ACATAACTAACTA
212598 A
1 A
212599 AAATATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (13 bp):
ACATAACTAACTA
Found at i:212631 original size:18 final size:17
Alignment explanation
Indices: 212610--212645 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
212600 AATATGAATT
*
212610 TAAAGTAAAATAAATAAA
1 TAAAATAAAATAAA-AAA
212628 TAAAATAAAATAAAAAA
1 TAAAATAAAATAAAAAA
212645 T
1 T
212646 TGTTAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
TAAAATAAAATAAAAAA
Found at i:214620 original size:17 final size:19
Alignment explanation
Indices: 214598--214638 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
214588 GGGATGTGGA
214598 AATTTTT-CTAT-TACTTC
1 AATTTTTACTATCTACTTC
*
214615 AATTTTTACTGTCTACTTC
1 AATTTTTACTATCTACTTC
214634 AATTT
1 AATTT
214639 CTCGCTGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 3 0.14
19 11 0.52
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.56
Consensus pattern (19 bp):
AATTTTTACTATCTACTTC
Found at i:220466 original size:24 final size:24
Alignment explanation
Indices: 220429--220501 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
220419 GGTAAGAAAT
220429 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
* * *
220453 TTTCCACGGTTCCTCTCTTCACAC
1 TTTCCACAGCTCCTCTCTTCACCC
*
220477 TTTCCACAGCTCCTCTATTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
220501 T
1 T
220502 ATCAATTGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.14, C:0.45, G:0.05, T:0.36
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:226500 original size:13 final size:13
Alignment explanation
Indices: 226477--226512 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
226467 ACACACAAAC
226477 AAAAA-AAAAAAA
1 AAAAAGAAAAAAA
*
226489 AAGAAGAAAAAAA
1 AAAAAGAAAAAAA
226502 AAAAAGAAAAA
1 AAAAAGAAAAA
226513 GAAGAAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:226500 original size:16 final size:16
Alignment explanation
Indices: 226479--226509 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
226469 ACACAAACAA
226479 AAAAAAAAAAAAGAAG
1 AAAAAAAAAAAAGAAG
226495 AAAAAAAAAAAAGAA
1 AAAAAAAAAAAAGAA
226510 AAAGAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAGAAG
Found at i:226501 original size:19 final size:19
Alignment explanation
Indices: 226477--226515 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
226467 ACACACAAAC
*
226477 AAAAAAAAAAAA-AAGAAG
1 AAAAAAAAAAAAGAAAAAG
226495 AAAAAAAAAAAAGAAAAAG
1 AAAAAAAAAAAAGAAAAAG
226514 AA
1 AA
226516 GAAACTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAGAAAAAG
Found at i:226505 original size:22 final size:22
Alignment explanation
Indices: 226477--226519 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
226467 ACACACAAAC
226477 AAAAAAAAAAAAAAGAAGAAAA
1 AAAAAAAAAAAAAAGAAGAAAA
*
226499 AAAAAAAAGAAAAAGAAGAAA
1 AAAAAAAAAAAAAAGAAGAAA
226520 CTATTGTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAGAAGAAAA
Found at i:248095 original size:40 final size:40
Alignment explanation
Indices: 248050--248151 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
248040 CAATACCGGT
* *
248050 AGCTTGTCTACATTGCTAGCAGTTTATTTGCAATACTAGC
1 AGCTTGTCTACATTACTAGCAGTTTATCTGCAATACTAGC
* * * * * *
248090 AGCTTGTCTGCATTATTGGCAGTTTATCTGCATTATTGGC
1 AGCTTGTCTACATTACTAGCAGTTTATCTGCAATACTAGC
*
248130 AGCTTGTCTACATTACTGGCAG
1 AGCTTGTCTACATTACTAGCAG
248152 CTTGTCTTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (40 bp):
AGCTTGTCTACATTACTAGCAGTTTATCTGCAATACTAGC
Found at i:248101 original size:20 final size:20
Alignment explanation
Indices: 248050--248158 Score: 101
Period size: 20 Copynumber: 5.5 Consensus size: 20
248040 CAATACCGGT
* * *
248050 AGCTTGTCTACATTGCTAGC
1 AGCTTGTCTGCATTACTGGC
* * * * *
248070 AGTTTATTTGCAATACTAGC
1 AGCTTGTCTGCATTACTGGC
*
248090 AGCTTGTCTGCATTATTGGC
1 AGCTTGTCTGCATTACTGGC
* * *
248110 AGTTTATCTGCATTATTGGC
1 AGCTTGTCTGCATTACTGGC
*
248130 AGCTTGTCTACATTACTGGC
1 AGCTTGTCTGCATTACTGGC
248150 AGCTTGTCT
1 AGCTTGTCT
248159 TCAAATTTGG
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (20 bp):
AGCTTGTCTGCATTACTGGC
Found at i:254312 original size:12 final size:12
Alignment explanation
Indices: 254295--254319 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
254285 CTAGACAACT
254295 TAGACATTTTTG
1 TAGACATTTTTG
254307 TAGACATTTTTG
1 TAGACATTTTTG
254319 T
1 T
254320 TCTTATTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TAGACATTTTTG
Found at i:265809 original size:42 final size:42
Alignment explanation
Indices: 265750--265833 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
265740 CAGTTAGTGA
*
265750 AATATACAATAATTTACATAAAATTAGAGGTCAATCCAAATT
1 AATATACAATAATTTACATAAAATTAAAGGTCAATCCAAATT
*
265792 AATATACAATAATTTACATAAAATTAAAGGTTAATCCAAATT
1 AATATACAATAATTTACATAAAATTAAAGGTCAATCCAAATT
265834 GTCAAGTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (42 bp):
AATATACAATAATTTACATAAAATTAAAGGTCAATCCAAATT
Found at i:281662 original size:52 final size:53
Alignment explanation
Indices: 281606--281710 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 53
281596 AAATAATTAA
281606 TAGAATGGGCCTATTGGTCTGGTGGATAAGTGGAGTGTTGGT-TGAGGGAGGT
1 TAGAATGGGCCTATTGGTCTGGTGGATAAGTGGAGTGTTGGTGTGAGGGAGGT
281658 TAGAATGGGCCTATTGGTCTGGTGGATAAGTGGAGTGTTGGTGTGAGGGAGGT
1 TAGAATGGGCCTATTGGTCTGGTGGATAAGTGGAGTGTTGGTGTGAGGGAGGT
281711 CATGGGTTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 42 0.81
53 10 0.19
ACGTcount: A:0.19, C:0.06, G:0.45, T:0.30
Consensus pattern (53 bp):
TAGAATGGGCCTATTGGTCTGGTGGATAAGTGGAGTGTTGGTGTGAGGGAGGT
Found at i:284028 original size:18 final size:17
Alignment explanation
Indices: 284005--284061 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
283995 TAAAAATAAA
284005 AATAACATTTTGAAATTG
1 AATAACATTTTGAAA-TG
284023 AATAACGA-TTTGTAAATG
1 AATAAC-ATTTTG-AAATG
**
284041 AATAATGTTTTGAAAATG
1 AATAACATTTTG-AAATG
284059 AAT
1 AAT
284062 GACACGATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 29 0.88
19 4 0.12
ACGTcount: A:0.46, C:0.04, G:0.14, T:0.37
Consensus pattern (17 bp):
AATAACATTTTGAAATG
Found at i:285309 original size:141 final size:140
Alignment explanation
Indices: 285135--285410 Score: 543
Period size: 141 Copynumber: 2.0 Consensus size: 140
285125 TGTGCGCGCA
285135 TTGCAATTTAGTCCTTCATTTCGTTTTAATTACATTTATAGTTTTTTCTTTTTTCTTTTTACAAT
1 TTGCAATTTAGTCCTTCATTTCGTTTTAATTACATTTATAGTTTTTTCTTTTTTCTTTTTACAAT
285200 TCGTTTTTTTTTATTTTGTTTTTATTTATTATTTCCATTACTATTATTATTATATTATTTACTAT
66 TCGTTTTTTTTTATTTTGTTTTTATTTATTATTTCCATTACTATTATTATTATATTATTTACTAT
285265 CTATTACATTT
131 C-ATTACATTT
285276 TTGCAATTTAGTCCTTCATTTCGTTTTAATTACATTTATAGTTTTTTCTTTTTTCTTTTTACAAT
1 TTGCAATTTAGTCCTTCATTTCGTTTTAATTACATTTATAGTTTTTTCTTTTTTCTTTTTACAAT
285341 TCGTTTTTTTTTATTTTGTTTTTATTTATTATTTCCATTACTATTATTATTATATTATTTACTAT
66 TCGTTTTTTTTTATTTTGTTTTTATTTATTATTTCCATTACTATTATTATTATATTATTTACTAT
285406 CATTA
131 CATTA
285411 TTATTACATT
Statistics
Matches: 135, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
140 4 0.03
141 131 0.97
ACGTcount: A:0.21, C:0.11, G:0.04, T:0.63
Consensus pattern (140 bp):
TTGCAATTTAGTCCTTCATTTCGTTTTAATTACATTTATAGTTTTTTCTTTTTTCTTTTTACAAT
TCGTTTTTTTTTATTTTGTTTTTATTTATTATTTCCATTACTATTATTATTATATTATTTACTAT
CATTACATTT
Found at i:293287 original size:28 final size:28
Alignment explanation
Indices: 293247--293316 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
293237 NNNNNNNNNN
* *
293247 GCACACTTAGTGCTTAATAATCAATCTC
1 GCACACTTAGTGCTTAACAATCAAACTC
* *
293275 GCACACTTAGTGCTTTACAATTAAACTC
1 GCACACTTAGTGCTTAACAATCAAACTC
293303 GCACACTTAGTGCT
1 GCACACTTAGTGCT
293317 AATCTCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (28 bp):
GCACACTTAGTGCTTAACAATCAAACTC
Found at i:305733 original size:44 final size:44
Alignment explanation
Indices: 305601--306304 Score: 1011
Period size: 44 Copynumber: 16.0 Consensus size: 44
305591 GTTGAAAGGC
*
305601 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAATAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*** * *
305645 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAA
305690 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* *
305734 AGCAAATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * * * *
305778 AGTAGGTCTTATCTTCATGTATTGGCGTGAAATAGATTGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
305822 AGAAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
305866 AGCAGATCTTGTCTTCATGTATTGGCATGAAGTATATCGAAAAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
305910 AGCAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
305954 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
**
305998 AGCAGATAC-TGTCTTCATGTATTGGCACGAAGTAGATCGAAGAA
1 AGCAGAT-CTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
306042 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
306086 AGCAAATCTTGTCTTCGTGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
306130 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
306174 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* *
306218 AGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA-A
* * *
306263 A-CAGGTCTTGTCTTCCCATATATTGGC--GAAATAGATCGAAGA
1 AGCAGATCTTGTCTT--CATGTATTGGCGTGAAGTAGATCGAAGA
306305 TACAAGTCTT
Statistics
Matches: 590, Mismatches: 64, Indels: 12
0.89 0.10 0.02
Matches are distributed among these distances:
43 1 0.00
44 539 0.91
45 40 0.07
46 10 0.02
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
Done.