Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3249

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 466

Length: 777
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44


Found at i:490 original size:15 final size:15

Alignment explanation


    Indices: 470--500  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        460 ATAGAAGCAA

                           
        470 TTTAATAAATTGTAC
          1 TTTAATAAATTGTAC

                           
        485 TTTAATAAATTGTAC
          1 TTTAATAAATTGTAC

             
        500 T
          1 T

        501 GGGAATTACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48


Consensus pattern (15 bp):   
TTTAATAAATTGTAC
Done.