Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4664

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 301

Length: 503
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.49


Found at i:405 original size:12 final size:11

Alignment explanation


    Indices: 378--442  Score: 82
    Period size: 11  Copynumber: 6.0  Consensus size: 11

        368 AGACCGTATG

                       
        378 CAATTTTTTTT
          1 CAATTTTTTTT

                       
        389 C---TTTTTTT
          1 CAATTTTTTTT

                       
        397 CAATTTTTTTT
          1 CAATTTTTTTT

                       
        408 CAATTTTTTTT
          1 CAATTTTTTTT

               *        
        419 CGATTTTTTTTT
          1 C-AATTTTTTTT

                        
        431 CAAATTTTTTTT
          1 C-AATTTTTTTT

        443 TCCACGAGTC


Statistics
Matches: 47,  Mismatches: 3, Indels: 7
        0.82            0.05        0.12

Matches are distributed among these distances:
   8    8  0.17
  11   20  0.43
  12   19  0.40

ACGTcount: A:0.15, C:0.09, G:0.02, T:0.74


Consensus pattern (11 bp):   
CAATTTTTTTT
Done.