Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3951

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 372

Length: 620
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37


Found at i:330 original size:18 final size:18

Alignment explanation


    Indices: 307--371  Score: 60
    Period size: 18  Copynumber: 3.6  Consensus size: 18

        297 AATTTTATCT

                              
        307 ATTTATTTATAAAGACTA
          1 ATTTATTTATAAAGACTA

                         ***  * 
        325 ATTTATTTATTTATTTA-AA
          1 ATTTATTTA--TAAAGACTA

                *             
        344 ATTTTTTTATAAAGACTA
          1 ATTTATTTATAAAGACTA

                      
        362 ATTTATTTAT
          1 ATTTATTTAT

        372 TTTTTGAGTA


Statistics
Matches: 34,  Mismatches: 10, Indels: 6
        0.68            0.20        0.12

Matches are distributed among these distances:
  17    3  0.09
  18   19  0.56
  19    9  0.26
  20    3  0.09

ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55


Consensus pattern (18 bp):   
ATTTATTTATAAAGACTA
Done.