Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1860

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1240
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35


Found at i:815 original size:13 final size:13

Alignment explanation


    Indices: 797--821  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        787 TTGCCCGGGC

                         
        797 CCAAACAAAAAAA
          1 CCAAACAAAAAAA

                        
        810 CCAAACAAAAAA
          1 CCAAACAAAAAA

        822 TAAATGATAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00


Consensus pattern (13 bp):   
CCAAACAAAAAAA
Done.