Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2768

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 511

Length: 853
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27


Found at i:820 original size:40 final size:40

Alignment explanation


    Indices: 775--851  Score: 118
    Period size: 40  Copynumber: 1.9  Consensus size: 40

        765 CAAGCACAAT

                                 *                  
        775 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
          1 TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAA

                           *          *     *    
        815 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC
          1 TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC

        852 AA


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  40   33  1.00

ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26


Consensus pattern (40 bp):   
TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAA
Done.