Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1985

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35


Found at i:244 original size:30 final size:30

Alignment explanation


    Indices: 208--264  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        198 ATATGGCTTC

                                           
        208 CCCCTTGCTGA-TTTCGTTCACCATGGATAA
          1 CCCCTTGCT-ATTTTCGTTCACCATGGATAA

                                *      
        238 CCCCTTGCTATTTTCGTTCATCATGGA
          1 CCCCTTGCTATTTTCGTTCACCATGGA

        265 GAAGATGGAC


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  29    1  0.04
  30   24  0.96

ACGTcount: A:0.18, C:0.30, G:0.16, T:0.37


Consensus pattern (30 bp):   
CCCCTTGCTATTTTCGTTCACCATGGATAA
Done.