Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2558

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 544

Length: 908
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34


Found at i:224 original size:41 final size:41

Alignment explanation


    Indices: 192--297  Score: 131
    Period size: 41  Copynumber: 2.6  Consensus size: 41

        182 ACCAGCTTTT

                 *                            *      
        192 AGCCTGCTAAACTTATAGTCTGAAATGTTTCACCTGCATCA
          1 AGCCTACTAAACTTATAGTCTGAAATGTTTCACCAGCATCA

                     *         *              *      
        233 AGCCTACTAGACTTATAGTTTGAAATGTTTCACCGGCATCA
          1 AGCCTACTAAACTTATAGTCTGAAATGTTTCACCAGCATCA

                 *   *  *  *        
        274 AGCCTGCTAGACATAAAGTCTGAA
          1 AGCCTACTAAACTTATAGTCTGAA

        298 TCATCTCACT


Statistics
Matches: 57,  Mismatches: 8, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  41   57  1.00

ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29


Consensus pattern (41 bp):   
AGCCTACTAAACTTATAGTCTGAAATGTTTCACCAGCATCA
Done.