Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4184

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 342

Length: 570
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33


Found at i:297 original size:25 final size:25

Alignment explanation


    Indices: 268--343  Score: 109
    Period size: 25  Copynumber: 3.0  Consensus size: 25

        258 CGTAAGTTAC

                                     
        268 ATTCGGACGCGTACGTTACACGCAA
          1 ATTCGGACGCGTACGTTACACGCAA

                         *            
        293 ATTC-GACAGCGTTCGTTACACGCAA
          1 ATTCGGAC-GCGTACGTTACACGCAA

              *   *                  
        318 ATCCGGCCGCGTACGTTACACGCAA
          1 ATTCGGACGCGTACGTTACACGCAA

             
        343 A
          1 A

        344 ACTTCAACAT


Statistics
Matches: 45,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
  24    3  0.07
  25   40  0.89
  26    2  0.04

ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20


Consensus pattern (25 bp):   
ATTCGGACGCGTACGTTACACGCAA
Done.