Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3566

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 432

Length: 721
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39


Found at i:603 original size:17 final size:17

Alignment explanation


    Indices: 583--634  Score: 70
    Period size: 17  Copynumber: 3.1  Consensus size: 17

        573 TTAATTTCCA

                          *  
        583 TAATGTAATTATTTTTT
          1 TAATGTAATTATTTATT

                             
        600 TAATGTAATTATTTATT
          1 TAATGTAATTATTTATT

                *  *         
        617 T-ATTTATTTATTTATT
          1 TAATGTAATTATTTATT

              
        633 TA
          1 TA

        635 TCTATGTATA


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  16   14  0.45
  17   17  0.55

ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65


Consensus pattern (17 bp):   
TAATGTAATTATTTATT

Found at i:617 original size:4 final size:4

Alignment explanation


    Indices: 608--635  Score: 56
    Period size: 4  Copynumber: 7.0  Consensus size: 4

        598 TTTAATGTAA

                                              
        608 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
          1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT

        636 CTATGTATAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   24  1.00

ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75


Consensus pattern (4 bp):   
TTAT

Done.