Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3626

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 424

Length: 707
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:43 original size:17 final size:18

Alignment explanation


    Indices: 5--43  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

          1 TTCT

                *          *  
          5 AAATTACATAATATATAA
          1 AAATAACATAATATACAA

                              
         23 AAATAACATAATAT-CAA
          1 AAATAACATAATATACAA

                
         40 AAAT
          1 AAAT

         44 TATAAACTTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17    6  0.32
  18   13  0.68

ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28


Consensus pattern (18 bp):   
AAATAACATAATATACAA
Done.