Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2485

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 559

Length: 932
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:426 original size:131 final size:132

Alignment explanation


    Indices: 1--399  Score: 642
    Period size: 132  Copynumber: 3.0  Consensus size: 132

                                                                             
          1 TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTGATCTCCCCAAGCAGTAGTGGAGC
          1 TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTGATCTCCCCAAGCAGTAGTGGAGC

                                       *                                     
         66 AGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAATTCT
         66 AGATCAAAGATGGTGAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAACCAGTAATTCT

              
        131 AC
        131 AC

                                                                             
        133 TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTGATCTCCCCAAGCAGTAGTGGAGC
          1 TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTGATCTCCCCAAGCAGTAGTGGAGC

                                      *                          *           
        198 AGATCAAAGATGGTGAATTTTACCTCATTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
         66 AGATCAAAGATGGTGAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAACCAGTAATTCT

              
        263 AC
        131 AC

                        *                    *   *   *        *            **
        265 TTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAGGTCTTATCT-CCCTAGCAGTAGTGGAAT
          1 TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTGATCTCCCCAAGCAGTAGTGGAGC

                                           *    *          *      *          
        329 AGATCAAAGATGGT-AGATTTTACCTCCTTGAGGTTGCAGTGGAGTATATTGAATCCAGTAATTC
         66 AGATCAAAGATGGTGA-ATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAACCAGTAATTC

               
        393 TA-
        130 TAC

                 
        395 TTCCC
          1 TTCCC

        400 CCGGTCGGCA


Statistics
Matches: 251,  Mismatches: 15, Indels: 4
        0.93            0.06        0.01

Matches are distributed among these distances:
 130    6  0.02
 131   74  0.29
 132  171  0.68

ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29


Consensus pattern (132 bp):   
TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTGATCTCCCCAAGCAGTAGTGGAGC
AGATCAAAGATGGTGAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAACCAGTAATTCT
AC
Done.