Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold461
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 420647
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.29
Warning! 59459 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:25 original size:17 final size:18
Alignment explanation
Indices: 3--93 Score: 64
Period size: 17 Copynumber: 4.9 Consensus size: 18
1 AT
3 ACATAACTTACATAA-TA
1 ACATAACTTACATAACTA
*
20 ACATAATACGTTACATAATATTA
1 ACAT-A-AC-TTACAT-A-ACTA
* *
43 TACGTAACTCACATAACTA
1 -ACATAACTTACATAACTA
*
62 A-ATAACTTACGTAA-T-
1 ACATAACTTACATAACTA
77 ACATAACTTACATAACT
1 ACATAACTTACATAACT
94 CATATATACT
Statistics
Matches: 58, Mismatches: 7, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
15 1 0.02
16 13 0.22
17 15 0.26
18 2 0.03
19 5 0.09
20 7 0.12
21 6 0.10
22 3 0.05
23 3 0.05
24 3 0.05
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (18 bp):
ACATAACTTACATAACTA
Found at i:97 original size:16 final size:17
Alignment explanation
Indices: 47--97 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 17
37 ATATTATACG
* *
47 TAACTCACATAACTAAA
1 TAACTTACATAACTACA
*
64 TAACTTACGTAA-TACA
1 TAACTTACATAACTACA
80 TAACTTACATAACT-CA
1 TAACTTACATAACTACA
96 TA
1 TA
98 TATACTTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 18 0.62
17 11 0.38
ACGTcount: A:0.47, C:0.22, G:0.02, T:0.29
Consensus pattern (17 bp):
TAACTTACATAACTACA
Found at i:8103 original size:42 final size:42
Alignment explanation
Indices: 8044--8264 Score: 148
Period size: 42 Copynumber: 5.2 Consensus size: 42
8034 CATATATAGT
* *
8044 GGCGTTTGTAAATAAAGCGCCGCTATAGGCT-AATGTATTTGC
1 GGCGTTTGT-AGTAAAGCGCCGCTAAAGGCTCAATGTATTTGC
* *** *
8086 GGCGTTTGTAGTGAAAGCGTCGCTAAAAAATCAGA-GTTTTTAGC
1 GGCGTTTGTAGT-AAAGCGCCGCTAAAGGCTCA-ATGTATTT-GC
* * * * *
8130 GGCGTTTGTTGTCAAAGCGCTGCTAAAGG-TCAAGGTATCTAGT
1 GGCGTTTGTAGT-AAAGCGCCGCTAAAGGCTCAATGTAT-TTGC
* * * *
8173 GGCGTTTGTAAATAAAGTGCCGCTATAGGCT-AATGTTTTTGC
1 GGCGTTTGT-AGTAAAGCGCCGCTAAAGGCTCAATGTATTTGC
* *
8215 GGCGTTTTTAGTGAAAGCGCCGCTAAAGG-TCAA-GCTCTTTAGC
1 GGCGTTTGTAGT-AAAGCGCCGCTAAAGGCTCAATG-TATTT-GC
8258 GGCGTTT
1 GGCGTTT
8265 TAGGTTTAAG
Statistics
Matches: 137, Mismatches: 30, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
41 6 0.04
42 53 0.39
43 49 0.36
44 29 0.21
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
GGCGTTTGTAGTAAAGCGCCGCTAAAGGCTCAATGTATTTGC
Found at i:8200 original size:129 final size:129
Alignment explanation
Indices: 7994--8241 Score: 381
Period size: 129 Copynumber: 1.9 Consensus size: 129
7984 AGCCAAGGTC
7994 TTTTAGCGGCGTTCGTGCCCAAAGCACCGCTAAAGGTCAACATATATAGTGGCGTTTGTAAATAA
1 TTTTAGCGGCGTTCGTGCCCAAAGCACCGCTAAAGGTCAACATATATAGTGGCGTTTGTAAATAA
*
8059 AGCGCCGCTATAGGCTAATGTATTTGCGGCGTTTGTAGTGAAAGCGTCGCTAAAAAATCAGAGT
66 AGCGCCGCTATAGGCTAATGTATTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAAAAATCAGAGT
* * * * ** *
8123 TTTTAGCGGCGTTTGTTG-TCAAAGCGCTGCTAAAGGTCAAGGTATCTAGTGGCGTTTGTAAATA
1 TTTTAGCGGCGTTCG-TGCCCAAAGCACCGCTAAAGGTCAACATATATAGTGGCGTTTGTAAATA
* * *
8187 AAGTGCCGCTATAGGCTAATGTTTTTGCGGCGTTTTTAGTGAAAGCGCCGCTAAA
65 AAGCGCCGCTATAGGCTAATGTATTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAA
8242 GGTCAAGCTC
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
129 105 0.98
130 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (129 bp):
TTTTAGCGGCGTTCGTGCCCAAAGCACCGCTAAAGGTCAACATATATAGTGGCGTTTGTAAATAA
AGCGCCGCTATAGGCTAATGTATTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAAAAATCAGAGT
Found at i:8827 original size:31 final size:32
Alignment explanation
Indices: 8766--8839 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 32
8756 TACAATAAAT
**
8766 GTCACCCAACTATTATTTTTTTCTCTTTTTTG
1 GTCACCCAACTATTATAATTTTCTCTTTTTTG
*
8798 GTCACCCAACTATT-TAATTTTGTCTTTTTTG
1 GTCACCCAACTATTATAATTTTCTCTTTTTTG
8829 GTCA-CCAACTA
1 GTCACCCAACTA
8840 ACAACGTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
30 7 0.18
31 18 0.46
32 14 0.36
ACGTcount: A:0.20, C:0.23, G:0.08, T:0.49
Consensus pattern (32 bp):
GTCACCCAACTATTATAATTTTCTCTTTTTTG
Found at i:8982 original size:54 final size:56
Alignment explanation
Indices: 8904--9010 Score: 150
Period size: 54 Copynumber: 1.9 Consensus size: 56
8894 GACAAAATGG
* *
8904 AATAGTTGAATGATCATTTTTGTAACTTATT-ATAATTTGGTGA-TAAAAAAATACT
1 AATAATTGAATGATCATTTTTGTAACTT-TTCATAATTAGGTGACTAAAAAAATACT
8959 AATAATTGAATGA-C-TATTTTGTAACTTTTCATAATTAGGTGACTAAAAAAAT
1 AATAATTGAATGATCAT-TTTTGTAACTTTTCATAATTAGGTGACTAAAAAAAT
9011 TAAAAAACCA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
53 3 0.06
54 23 0.49
55 21 0.45
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (56 bp):
AATAATTGAATGATCATTTTTGTAACTTTTCATAATTAGGTGACTAAAAAAATACT
Found at i:11003 original size:154 final size:155
Alignment explanation
Indices: 10761--11069 Score: 611
Period size: 154 Copynumber: 2.0 Consensus size: 155
10751 ATGCAGTTTG
10761 AAATTTAGACTTATGTTTGAGCTTTAGTTTAATATTTGTTATTTTATGAAAATAATATTTGTTAT
1 AAATTTAGACTTATGTTTGAGCTTTAGTTTAATATTTGTTATTTTATGAAAATAATATTTGTTAT
10826 TTATTATTTAATTTGAAAATAAATAATAAATACATAAATGATTGATAGAAGATTAAAGATTTTAA
66 TTATTATTTAATTTGAAAATAAATAATAAATACATAAATGATTGATAGAAGATTAAAGATTTTAA
10891 AGAAATAATTTTAAAAACAACATAT
131 AGAAATAATTTTAAAAACAACATAT
10916 AAATTTAGAC-TATGTTTGAGCTTTAGTTTAATATTTGTTATTTTATGAAAATAATATTTGTTAT
1 AAATTTAGACTTATGTTTGAGCTTTAGTTTAATATTTGTTATTTTATGAAAATAATATTTGTTAT
10980 TTATTATTTAATTTGAAAATAAATAATAAATACATAAATGATTGATAGAAGATTAAAGATTTTAA
66 TTATTATTTAATTTGAAAATAAATAATAAATACATAAATGATTGATAGAAGATTAAAGATTTTAA
11045 AGAAATAATTTTAAAAACAACATAT
131 AGAAATAATTTTAAAAACAACATAT
11070 TTGCTTAAGA
Statistics
Matches: 154, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
154 144 0.94
155 10 0.06
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (155 bp):
AAATTTAGACTTATGTTTGAGCTTTAGTTTAATATTTGTTATTTTATGAAAATAATATTTGTTAT
TTATTATTTAATTTGAAAATAAATAATAAATACATAAATGATTGATAGAAGATTAAAGATTTTAA
AGAAATAATTTTAAAAACAACATAT
Found at i:12026 original size:150 final size:151
Alignment explanation
Indices: 11848--12119 Score: 503
Period size: 150 Copynumber: 1.8 Consensus size: 151
11838 AATATTTCTA
11848 CTAGCTGTATACAAGCCACCACGTGTATATCTTCCAGGTTTTGGAGGTTTGGAAGCAACCAATGT
1 CTAGCTGTATA-AAGCCACCACGTGTATATCTTCCAGGTTTTGGAGGTTTGGAAGCAACCAATGT
*
11913 GGAAGCAACGTCTTCATACTTGAGCAG-TTCACTATCGTAATTTTTTTAAGATGGGAAAAGGTGG
65 GGAAGCAACGTCTTCATACTTGAGCAGAGT-ACTATCGTAATTTTTTTAAGATGGGAAAAGGTGG
11977 CAGACGGAACCAATGTTGATGTT
129 CAGACGGAACCAATGTTGATGTT
12000 CTAGCTGTAT-AAGCCACCACGTGTATATCTTCCAGGTTTTGGAGGTTTGGAAGCAACCAATGTG
1 CTAGCTGTATAAAGCCACCACGTGTATATCTTCCAGGTTTTGGAGGTTTGGAAGCAACCAATGTG
12064 GAAGCAACGTCTTCATACTTGAGCAGAGTACTATCGTAATTTTTTTAAGATGGGAA
66 GAAGCAACGTCTTCATACTTGAGCAGAGTACTATCGTAATTTTTTTAAGATGGGAA
12120 CTTTACACCC
Statistics
Matches: 118, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
150 107 0.91
151 1 0.01
152 10 0.08
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (151 bp):
CTAGCTGTATAAAGCCACCACGTGTATATCTTCCAGGTTTTGGAGGTTTGGAAGCAACCAATGTG
GAAGCAACGTCTTCATACTTGAGCAGAGTACTATCGTAATTTTTTTAAGATGGGAAAAGGTGGCA
GACGGAACCAATGTTGATGTT
Found at i:24619 original size:62 final size:65
Alignment explanation
Indices: 24547--24670 Score: 182
Period size: 65 Copynumber: 2.0 Consensus size: 65
24537 CTGCAAATAG
* *
24547 TTATTATTTGGAAGA-A-ATG-AGTTGAGGGTTGGCCTACTACTGTCAGTCATAATAACTTCATC
1 TTATTATTTGGAAGATATACGAAGTTGAGGGTTGGCCTACTAATGTCAGTCATAATAACTTCATC
* * *
24609 TTATTATTTGGAAGATATACGAATTTGAGGGTTGGCCTACTAATGTCGGTGATAATAACTTC
1 TTATTATTTGGAAGATATACGAAGTTGAGGGTTGGCCTACTAATGTCAGTCATAATAACTTC
24671 CCCTTACCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
62 15 0.28
63 1 0.02
64 2 0.04
65 36 0.67
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (65 bp):
TTATTATTTGGAAGATATACGAAGTTGAGGGTTGGCCTACTAATGTCAGTCATAATAACTTCATC
Found at i:27377 original size:106 final size:106
Alignment explanation
Indices: 27192--27668 Score: 900
Period size: 106 Copynumber: 4.5 Consensus size: 106
27182 ATGCAAATAG
27192 TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
1 TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
*
27257 TTGAGGGTTGTCCTACTAATGTCAGTCATAATAACTTCACC
66 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
*
27298 TTATTATTTGGAAGAAATTAGCTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
1 TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
27363 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
66 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
*
27404 TTATTATTTGGAAGAAATTAGTTGAGGGTTGACCTACTAATGTCAGTAATAATAACTGATATGAG
1 TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
27469 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
66 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
*
27510 TTATTATTTGGAAGAAATTAGTTGAGGGTTGACCTACTAATGTCAGTAATAATAACTGATATGAG
1 TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
27575 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
66 TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
* *
27616 TTATTATTTGGAAGAAATTAGTTGAGGTTTGGCCTACTAATGTCAGTGATAAT
1 TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAAT
27669 GACTTCCCCT
Statistics
Matches: 364, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 364 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (106 bp):
TTATTATTTGGAAGAAATTAGTTGAGGGTTGGCCTACTAATGTCAGTAATAATAACTGATATGAG
TTGAGGGTTGTCCTACTAATGTCAATCATAATAACTTCACC
Found at i:27896 original size:17 final size:17
Alignment explanation
Indices: 27874--27907 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27864 TGAATTGATT
* *
27874 TTTTTCTTATTTTTTTA
1 TTTTTCTGAATTTTTTA
27891 TTTTTCTGAATTTTTTA
1 TTTTTCTGAATTTTTTA
27908 AACAAGTCAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTCTGAATTTTTTA
Found at i:37563 original size:66 final size:66
Alignment explanation
Indices: 37418--37587 Score: 207
Period size: 66 Copynumber: 2.6 Consensus size: 66
37408 AGCAAATTAC
* * * **
37418 ACAACTTAAAGCAGAGGCAACATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGT
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAAC
*
37483 T
66 A
*
37484 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAG-TATGAAGAACTCCAA
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAA
37548 CA
65 CA
* * * * * *
37550 ACAGCTTAGAGCAGATGCGGCGGCAAGAGAAGCAGAGG
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
37588 CGGCAGCGAG
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
66 86 0.96
67 4 0.04
ACGTcount: A:0.41, C:0.18, G:0.27, T:0.14
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAAC
A
Found at i:37583 original size:21 final size:21
Alignment explanation
Indices: 37559--37630 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
37549 AACAGCTTAG
* *
37559 AGCAGATGCGGCGGCAAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
*
37580 AGCAGAGGCGGCAGCGAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
* * * * *
37601 AGTACAGGCTGCAGCGAGGGA
1 AGCAGAGGCGGCAGCAAGAGA
37622 AGCAGAGGC
1 AGCAGAGGC
37631 TAAAGTGAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.32, C:0.19, G:0.44, T:0.04
Consensus pattern (21 bp):
AGCAGAGGCGGCAGCAAGAGA
Found at i:37631 original size:21 final size:21
Alignment explanation
Indices: 37578--37670 Score: 105
Period size: 21 Copynumber: 4.4 Consensus size: 21
37568 GGCGGCAAGA
* *
37578 GAAGCAGAGGCGGCAGCGAGA
1 GAAGCAGAGGCTGCAGCGAGG
* *
37599 GAAGTACAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
** *
37620 GAAGCAGAGGCTAAAGTGAGG
1 GAAGCAGAGGCTGCAGCGAGG
**
37641 GAAATAGAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
37662 GAAGCAGAG
1 GAAGCAGAG
37671 CAGCGTCAAA
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.34, C:0.15, G:0.44, T:0.06
Consensus pattern (21 bp):
GAAGCAGAGGCTGCAGCGAGG
Found at i:38100 original size:42 final size:43
Alignment explanation
Indices: 37980--38119 Score: 146
Period size: 43 Copynumber: 3.3 Consensus size: 43
37970 ATCTGCCAAA
* ** *
37980 TTTAGTGGCGTTT-TGGTCAAAGCGCCGCTAAAGATAAGGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCAGGGTC
* *
38022 TTTAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCAGGGTC
* *
38065 TTTAGTC-GCGTTTGT-GAGAAAGCGCCGCTACAGATCAGAGG-C
1 TTTAG-CGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCAG-GGTC
38107 TATT-GCGGCGTTT
1 T-TTAGCGGCGTTT
38120 TAGGGGAAAG
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 40 0.48
43 41 0.49
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCAGGGTC
Found at i:38326 original size:22 final size:22
Alignment explanation
Indices: 38299--38341 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
38289 CTGCGGCGCT
*
38299 AAAAAGCGCCGCTAAAGGCTTA
1 AAAAAGCGCCGCTAAAAGCTTA
38321 AAAAAGCGCCGCTAAAAGCTT
1 AAAAAGCGCCGCTAAAAGCTT
38342 GTTTTGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.14
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCTTA
Found at i:41718 original size:38 final size:38
Alignment explanation
Indices: 41663--41751 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 38
41653 GCATTGTGGT
** * * *
41663 ATGGTTATCTATGGGCTCTATGGAGCGACACCATGAAA
1 ATGGTTATCTACAGGCTCTACGAAGCGACACCATAAAA
41701 ATGGTTATCTACAGGCTCTACGAAGCGACACCATAAAA
1 ATGGTTATCTACAGGCTCTACGAAGCGACACCATAAAA
*
41739 ATGATTATCTACA
1 ATGGTTATCTACA
41752 AGCTGTACAG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (38 bp):
ATGGTTATCTACAGGCTCTACGAAGCGACACCATAAAA
Found at i:41766 original size:38 final size:37
Alignment explanation
Indices: 41685--41766 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 37
41675 GGGCTCTATG
* * *
41685 GAGCGACACCATGAAAATGGTTATCTACAGGCTCTAC
1 GAGCGACACCATAAAAATGATTATCTACAAGCTCTAC
*
41722 GAAGCGACACCATAAAAATGATTATCTACAAGCTGTAC
1 G-AGCGACACCATAAAAATGATTATCTACAAGCTCTAC
41760 AGAGCGA
1 -GAGCGA
41767 TACTTCAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
37 1 0.03
38 37 0.95
39 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.20
Consensus pattern (37 bp):
GAGCGACACCATAAAAATGATTATCTACAAGCTCTAC
Found at i:45659 original size:19 final size:20
Alignment explanation
Indices: 45635--45676 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
45625 ACGTGTGAGA
45635 AAAAAAAATATAAA-ATTGT
1 AAAAAAAATATAAAGATTGT
*
45654 AAAAAAATTATAAAGATTGT
1 AAAAAAAATATAAAGATTGT
45674 AAA
1 AAA
45677 CTTTTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAAAAAATATAAAGATTGT
Found at i:45704 original size:28 final size:28
Alignment explanation
Indices: 45637--45705 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 28
45627 GTGTGAGAAA
*
45637 AAAAAATATAAAATTGTAAAAAAATTAT
1 AAAAAATATAAAATTGTAAAAAAATCAT
* * * * * *
45665 AAAGATTGTAAACTTTTATAAAAATCAT
1 AAAAAATATAAAATTGTAAAAAAATCAT
45693 AAAAAATATAAAA
1 AAAAAATATAAAA
45706 CGTATCAAAA
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (28 bp):
AAAAAATATAAAATTGTAAAAAAATCAT
Found at i:45904 original size:20 final size:20
Alignment explanation
Indices: 45879--45934 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
45869 GTAAGATAAT
45879 TTTTATAATTTTTTTACAAA
1 TTTTATAATTTTTTTACAAA
* **
45899 TTTTAT-ATTTCTTTACATT
1 TTTTATAATTTTTTTACAAA
*
45918 TTTTATAATTTTCTTAC
1 TTTTATAATTTTTTTAC
45935 TACTTTATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTATAATTTTTTTACAAA
Found at i:46007 original size:18 final size:18
Alignment explanation
Indices: 45970--46034 Score: 78
Period size: 18 Copynumber: 3.5 Consensus size: 18
45960 TTTAGGAATA
45970 ATTTTATATATATATTTTAC
1 ATTTT-TATATAT-TTTTAC
45990 ATTTTTATATATTTTTAC
1 ATTTTTATATATTTTTAC
* *
46008 AGTTCTATATA-TTTTAC
1 ATTTTTATATATTTTTAC
46025 AATTTTTATA
1 -ATTTTTATA
46035 GTTTTATTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
17 6 0.15
18 22 0.55
19 7 0.17
20 5 0.12
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTTATATATTTTTAC
Found at i:46039 original size:17 final size:16
Alignment explanation
Indices: 45980--46040 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
45970 ATTTTATATA
*
45980 TATATTTTACATTTTT
1 TATATTTTACAATTTT
* *
45996 ATATATTTTTACAGTTCTA
1 -TATA-TTTTACAATT-TT
46015 TATATTTTACAATTTT
1 TATATTTTACAATTTT
46031 TATAGTTTTA
1 TATA-TTTTA
46041 TTCTATTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
16 5 0.14
17 18 0.49
18 13 0.35
19 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.61
Consensus pattern (16 bp):
TATATTTTACAATTTT
Found at i:46101 original size:19 final size:19
Alignment explanation
Indices: 46026--46111 Score: 95
Period size: 19 Copynumber: 4.4 Consensus size: 19
46016 ATATTTTACA
*
46026 ATTTTTAT-AGTTTTATTC
1 ATTTTTATAAATTTTATTC
*
46044 TATTTTTAATAAATTTTAAAT-
1 -ATTTTT-ATAAATTTT-ATTC
*
46065 ATTTTTATTAAAATTTATTC
1 ATTTTTA-TAAATTTTATTC
46085 ATTTTTATAAATTTTATTC
1 ATTTTTATAAATTTTATTC
46104 ATTTTTAT
1 ATTTTTAT
46112 TTTTTATCAT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
19 28 0.49
20 22 0.39
21 5 0.09
22 2 0.04
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (19 bp):
ATTTTTATAAATTTTATTC
Found at i:46109 original size:20 final size:20
Alignment explanation
Indices: 46027--46109 Score: 75
Period size: 20 Copynumber: 4.2 Consensus size: 20
46017 TATTTTACAA
*
46027 TTTTTAT-AGTTTTATTCTAT
1 TTTTTATAAATTTTATTC-AT
* *
46047 TTTTAATAAATTTTA--AAT
1 TTTTTATAAATTTTATTCAT
*
46065 ATTTTTATTAAAATTTATTCA-
1 -TTTTTA-TAAATTTTATTCAT
46086 TTTTTATAAATTTTATTCAT
1 TTTTTATAAATTTTATTCAT
46106 TTTT
1 TTTT
46110 ATTTTTTATC
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
18 2 0.04
19 17 0.34
20 24 0.48
21 6 0.12
22 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (20 bp):
TTTTTATAAATTTTATTCAT
Found at i:46502 original size:93 final size:91
Alignment explanation
Indices: 46338--46576 Score: 238
Period size: 93 Copynumber: 2.6 Consensus size: 91
46328 TTCTGGTAGT
* * * * * *
46338 TCAAGTACCCAATTGAGTG--AGAAAAAAAGC-TGGAGCTTAATTGGTTTTTTTGAAAAAGTTCG
1 TCAAGTACCCAATTGAATGCAAAAAAAAAAACATAGAGCTTAATTGTTTTTTTTGAAAAAATTCG
* * **
46400 ACGGCCTTTTTCATGCATTTTGCAGC
66 AAGGCCTTTTTCATGCATTTTGAAAA
* *
46426 TCAAGTACCTAATT-AAGTGCCAAAAAAAAAAA-GTAGAAGCTTAATTGTTTTTTTTTGAAAAAA
1 TCAAGTACCCAATTGAA-TG-CAAAAAAAAAAACATAG-AGCTTAATTG-TTTTTTTTGAAAAAA
* * *
46489 TTTGAAGTCCTTTTTGATGCATTTTGAAAA
62 TTCGAAGGCCTTTTTCATGCATTTTGAAAA
* *
46519 TTAAGTACCCAATTGAATGCAAAAAAAAAAACATAGA-CTTAATTACTTTTTTTTGAAA
1 TCAAGTACCCAATTGAATGCAAAAAAAAAAACATAGAGCTTAATT-GTTTTTTTTGAAA
46577 CAGTTTAAAA
Statistics
Matches: 123, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
87 1 0.01
88 15 0.12
91 29 0.24
92 23 0.19
93 53 0.43
94 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (91 bp):
TCAAGTACCCAATTGAATGCAAAAAAAAAAACATAGAGCTTAATTGTTTTTTTTGAAAAAATTCG
AAGGCCTTTTTCATGCATTTTGAAAA
Found at i:47383 original size:46 final size:46
Alignment explanation
Indices: 47268--47390 Score: 169
Period size: 46 Copynumber: 2.7 Consensus size: 46
47258 TATAACTCAA
* *
47268 TATGGTTTTCTTCACTGAAATACCA-ACCTACTTTTCACAACTTAG
1 TATGGTTTTCTTTACTGAAATACCATACCTACATTTCACAACTTAG
* *
47313 TATGATTTTCATTACTGAAATACCATACCTACATTTCACAACTTAG
1 TATGGTTTTCTTTACTGAAATACCATACCTACATTTCACAACTTAG
* *
47359 TATGGTTTTCTTTAC-AAAATTACCATATCTAC
1 TATGGTTTTCTTTACTGAAA-TACCATACCTAC
47391 GTTCCACACT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
45 25 0.37
46 43 0.63
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (46 bp):
TATGGTTTTCTTTACTGAAATACCATACCTACATTTCACAACTTAG
Found at i:58265 original size:25 final size:22
Alignment explanation
Indices: 58221--58287 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 22
58211 CCTAAATTTT
58221 TAAATTCAAAAAATAAAGAGAC
1 TAAATTCAAAAAATAAAGAGAC
* *
58243 TAAATTCTTAAAAATAAATAGAGAT
1 TAAATTC-AAAAAAT-AA-AGAGAC
* *
58268 TAAATTTAAAATAT-AAGAGA
1 TAAATTCAAAAAATAAAGAGA
58288 ATATAAAGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 5 0.14
22 8 0.22
23 6 0.16
24 7 0.19
25 11 0.30
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (22 bp):
TAAATTCAAAAAATAAAGAGAC
Found at i:58276 original size:23 final size:22
Alignment explanation
Indices: 58220--58287 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
58210 ACCTAAATTT
*
58220 TTAAATTCAAAAA-ATAAAGAGA
1 TTAAATTTAAAAATA-AAAGAGA
*
58242 CTAAATTCTTAAAAATAAATAGAGA
1 TTAAA-T-TTAAAAATAAA-AGAGA
*
58267 TTAAATTT-AAAATATAAGAGA
1 TTAAATTTAAAAATAAAAGAGA
58288 ATATAAAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
21 5 0.13
22 11 0.29
23 3 0.08
24 9 0.24
25 10 0.26
ACGTcount: A:0.59, C:0.04, G:0.09, T:0.28
Consensus pattern (22 bp):
TTAAATTTAAAAATAAAAGAGA
Found at i:68279 original size:41 final size:41
Alignment explanation
Indices: 68172--68329 Score: 158
Period size: 41 Copynumber: 3.8 Consensus size: 41
68162 GATATGTATT
*
68172 TTCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTGTGTA
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TG-A
* * *
68215 TACGTGTAAGACCATGTCCGGGACATTGGCATCGTATTTGA
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
* * * * *
68256 TTTGTGTAAGACC-CTCTCTGGGACAGTGGCATCATATGTGA
1 TTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGTATTTGA
* *
68297 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TT-CGTGTAAGACCACGTCTGGGACATTGGCAT
68330 TGTACGAGCC
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 35 0.37
42 25 0.27
43 33 0.35
44 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
TTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
Found at i:68520 original size:16 final size:17
Alignment explanation
Indices: 68491--68522 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
68481 TGAATTGATG
68491 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
68508 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
68523 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:74109 original size:20 final size:20
Alignment explanation
Indices: 74084--74126 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
74074 GACGTGTGAC
74084 AAAAAAATTATAAAAATTGT
1 AAAAAAATTATAAAAATTGT
*
74104 AAAAAAATTATAAAGATTGT
1 AAAAAAATTATAAAAATTGT
74124 AAA
1 AAA
74127 CTTTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAAAAATTATAAAAATTGT
Found at i:74343 original size:20 final size:20
Alignment explanation
Indices: 74318--74373 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
74308 GTACGATAAT
74318 TTTTATAATTTTTTTACAAA
1 TTTTATAATTTTTTTACAAA
**
74338 TTTTAT-ATTTCTTTT-CATT
1 TTTTATAATTT-TTTTACAAA
*
74357 TTTTATAATTTTCTTAC
1 TTTTATAATTTTTTTAC
74374 TACTTTATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTATAATTTTTTTACAAA
Found at i:74434 original size:18 final size:18
Alignment explanation
Indices: 74411--74469 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
74401 GTGGGAATAA
74411 TTTTATATTTTTTTACAT
1 TTTTATATTTTTTTACAT
* *
74429 TTTTATATATTTTTACAG
1 TTTTATATTTTTTTACAT
* *
74447 TTCTATA-TATTTTACAAT
1 TTTTATATTTTTTTAC-AT
74465 TTTTA
1 TTTTA
74470 CGATTTTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
17 6 0.18
18 27 0.82
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTATATTTTTTTACAT
Found at i:74547 original size:19 final size:19
Alignment explanation
Indices: 74482--74700 Score: 81
Period size: 19 Copynumber: 10.8 Consensus size: 19
74472 ATTTTTATTG
74482 TTTTATTCTATATTTTAATAAA
1 TTTTATTC-AT-TTTT-ATAAA
* *
74504 TTTTAAAT-ATTTTTTTAAA
1 TTTT-ATTCATTTTTATAAA
*
74523 ATTTATTCATTTTTATAAA
1 TTTTATTCATTTTTATAAA
* ***
74542 TTTTATTGATTTTTATTTTT
1 TTTTATTCATTTTTA-TAAA
* *
74562 TTTTTTTACA-TTTTATATAT
1 TTTTATT-CATTTTTATA-AA
74582 TTTTACAGTTCTATATATTT-TACAA
1 TTTT--A-TTC-AT-T-TTTATA-AA
* **
74607 TTTT-TACGATTTTTAT-TG
1 TTTTATTC-ATTTTTATAAA
74625 TTTTATTCTATATTTTAATAAA
1 TTTTATTC-AT-TTTT-ATAAA
* *
74647 TTTTAAAT-ATTTTTTTAAA
1 TTTT-ATTCATTTTTATAAA
*
74666 ATTTATTCATTTTTATAAA
1 TTTTATTCATTTTTATAAA
*
74685 TTTTATTGATTTTTAT
1 TTTTATTCATTTTTAT
74701 TTTTTATCAT
Statistics
Matches: 146, Mismatches: 32, Indels: 41
0.67 0.15 0.19
Matches are distributed among these distances:
18 8 0.05
19 69 0.47
20 31 0.21
21 11 0.08
22 9 0.06
23 7 0.05
25 8 0.05
26 3 0.02
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATTCATTTTTATAAA
Found at i:74586 original size:17 final size:18
Alignment explanation
Indices: 74564--74602 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
74554 TTATTTTTTT
*
74564 TTTTTACA-TTTTATATA
1 TTTTTACAGTTCTATATA
74581 TTTTTACAGTTCTATATA
1 TTTTTACAGTTCTATATA
74599 TTTT
1 TTTT
74603 ACAATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTTACAGTTCTATATA
Found at i:74596 original size:143 final size:144
Alignment explanation
Indices: 74418--74705 Score: 569
Period size: 143 Copynumber: 2.0 Consensus size: 144
74408 TAATTTTATA
74418 TTTTTTTACATTTTTATATATTTTTACAGTTCTATATATTTTACAATTTTTACGATTTTTATTGT
1 TTTTTTTACATTTTTATATATTTTTACAGTTCTATATATTTTACAATTTTTACGATTTTTATTGT
74483 TTTATTCTATATTTTAATAAATTTTAAATATTTTTTTAAAATTTATTCATTTTTATAAATTTTAT
66 TTTATTCTATATTTTAATAAATTTTAAATATTTTTTTAAAATTTATTCATTTTTATAAATTTTAT
74548 TGATTTTTATTTTT
131 TGATTTTTATTTTT
74562 TTTTTTTACA-TTTTATATATTTTTACAGTTCTATATATTTTACAATTTTTACGATTTTTATTGT
1 TTTTTTTACATTTTTATATATTTTTACAGTTCTATATATTTTACAATTTTTACGATTTTTATTGT
74626 TTTATTCTATATTTTAATAAATTTTAAATATTTTTTTAAAATTTATTCATTTTTATAAATTTTAT
66 TTTATTCTATATTTTAATAAATTTTAAATATTTTTTTAAAATTTATTCATTTTTATAAATTTTAT
74691 TGATTTTTATTTTT
131 TGATTTTTATTTTT
74705 T
1 T
74706 ATCATTTTTT
Statistics
Matches: 144, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
143 134 0.93
144 10 0.07
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (144 bp):
TTTTTTTACATTTTTATATATTTTTACAGTTCTATATATTTTACAATTTTTACGATTTTTATTGT
TTTATTCTATATTTTAATAAATTTTAAATATTTTTTTAAAATTTATTCATTTTTATAAATTTTAT
TGATTTTTATTTTT
Found at i:81206 original size:812 final size:812
Alignment explanation
Indices: 79641--81266 Score: 3252
Period size: 812 Copynumber: 2.0 Consensus size: 812
79631 AATTTAGTTG
79641 ACATCATTATTTTTAATAGTTAAATTCAAATCTGAAATGAAAATGATTCTGATTTAGACTAATTT
1 ACATCATTATTTTTAATAGTTAAATTCAAATCTGAAATGAAAATGATTCTGATTTAGACTAATTT
79706 GAATTCAAAATAACTTAATTCTAATTTTTCCGACTTAAAATTTGACCACAAAATCAAAATAACTC
66 GAATTCAAAATAACTTAATTCTAATTTTTCCGACTTAAAATTTGACCACAAAATCAAAATAACTC
79771 AAATTAGGAAAGAGTATTATTCAGTTATGACTGATTTAATCGACTTAGTTGACGATTTGATTCAT
131 AAATTAGGAAAGAGTATTATTCAGTTATGACTGATTTAATCGACTTAGTTGACGATTTGATTCAT
79836 TTTAATTAATTCAGTTTTGTCGATTTGGACAGTAGAGTACTGATGACTAAAATTTATAATCGAAT
196 TTTAATTAATTCAGTTTTGTCGATTTGGACAGTAGAGTACTGATGACTAAAATTTATAATCGAAT
79901 CGATCAACTTAATTGACTTATATTTATTTATTTATTATTTTTAAATTATTTTAAATATATTTGTA
261 CGATCAACTTAATTGACTTATATTTATTTATTTATTATTTTTAAATTATTTTAAATATATTTGTA
79966 ATATGTGATATAATTTAAATTACCCAAACTTAAAATCCAATTATCTAACCTAACCCAACCCGAAA
326 ATATGTGATATAATTTAAATTACCCAAACTTAAAATCCAATTATCTAACCTAACCCAACCCGAAA
80031 ACCAACTCAAACCCAATTAATGACATCTTAGTAATGAAATCGGTTAACAATATCTTAGTCGATCG
391 ACCAACTCAAACCCAATTAATGACATCTTAGTAATGAAATCGGTTAACAATATCTTAGTCGATCG
80096 GTTCGGCTATTTTATATTAAGACCGATTAAGTCAGTTAAATTAGAAAAAAAAAATCTAACTGATT
456 GTTCGGCTATTTTATATTAAGACCGATTAAGTCAGTTAAATTAGAAAAAAAAAATCTAACTGATT
80161 AAAATAATCAAATGATTACTTTTGTCTCAAACTCAAAAAGGATATGTACCAAAATTATACATGAA
521 AAAATAATCAAATGATTACTTTTGTCTCAAACTCAAAAAGGATATGTACCAAAATTATACATGAA
80226 TTATGGTTTAATGTGCAATTGTATACATGAAATTTTGATTTGATGCAATTCTTGTAACTTATTAA
586 TTATGGTTTAATGTGCAATTGTATACATGAAATTTTGATTTGATGCAATTCTTGTAACTTATTAA
80291 CACCATTATTAATATAACATCATTTTATGTTTATATATCGCATGCATGAATAATTATATTTATCC
651 CACCATTATTAATATAACATCATTTTATGTTTATATATCGCATGCATGAATAATTATATTTATCC
80356 AATATAAAAATAAATAAATAAGTTTATTTCTTTAAATGTGTATGATTAAATCAAAATTAAAGTTT
716 AATATAAAAATAAATAAATAAGTTTATTTCTTTAAATGTGTATGATTAAATCAAAATTAAAGTTT
80421 CAAATATATATTTGAAACACAATTAAAGTTTC
781 CAAATATATATTTGAAACACAATTAAAGTTTC
80453 ACATCATTATTTTTAATAGTTAAATTCAAATCTGAAATGAAAATGATTCTGATTTAGACTAATTT
1 ACATCATTATTTTTAATAGTTAAATTCAAATCTGAAATGAAAATGATTCTGATTTAGACTAATTT
80518 GAATTCAAAATAACTTAATTCTAATTTTTCCGACTTAAAATTTGACCACAAAATCAAAATAACTC
66 GAATTCAAAATAACTTAATTCTAATTTTTCCGACTTAAAATTTGACCACAAAATCAAAATAACTC
80583 AAATTAGGAAAGAGTATTATTCAGTTATGACTGATTTAATCGACTTAGTTGACGATTTGATTCAT
131 AAATTAGGAAAGAGTATTATTCAGTTATGACTGATTTAATCGACTTAGTTGACGATTTGATTCAT
80648 TTTAATTAATTCAGTTTTGTCGATTTGGACAGTAGAGTACTGATGACTAAAATTTATAATCGAAT
196 TTTAATTAATTCAGTTTTGTCGATTTGGACAGTAGAGTACTGATGACTAAAATTTATAATCGAAT
80713 CGATCAACTTAATTGACTTATATTTATTTATTTATTATTTTTAAATTATTTTAAATATATTTGTA
261 CGATCAACTTAATTGACTTATATTTATTTATTTATTATTTTTAAATTATTTTAAATATATTTGTA
80778 ATATGTGATATAATTTAAATTACCCAAACTTAAAATCCAATTATCTAACCTAACCCAACCCGAAA
326 ATATGTGATATAATTTAAATTACCCAAACTTAAAATCCAATTATCTAACCTAACCCAACCCGAAA
80843 ACCAACTCAAACCCAATTAATGACATCTTAGTAATGAAATCGGTTAACAATATCTTAGTCGATCG
391 ACCAACTCAAACCCAATTAATGACATCTTAGTAATGAAATCGGTTAACAATATCTTAGTCGATCG
80908 GTTCGGCTATTTTATATTAAGACCGATTAAGTCAGTTAAATTAGAAAAAAAAAATCTAACTGATT
456 GTTCGGCTATTTTATATTAAGACCGATTAAGTCAGTTAAATTAGAAAAAAAAAATCTAACTGATT
80973 AAAATAATCAAATGATTACTTTTGTCTCAAACTCAAAAAGGATATGTACCAAAATTATACATGAA
521 AAAATAATCAAATGATTACTTTTGTCTCAAACTCAAAAAGGATATGTACCAAAATTATACATGAA
81038 TTATGGTTTAATGTGCAATTGTATACATGAAATTTTGATTTGATGCAATTCTTGTAACTTATTAA
586 TTATGGTTTAATGTGCAATTGTATACATGAAATTTTGATTTGATGCAATTCTTGTAACTTATTAA
81103 CACCATTATTAATATAACATCATTTTATGTTTATATATCGCATGCATGAATAATTATATTTATCC
651 CACCATTATTAATATAACATCATTTTATGTTTATATATCGCATGCATGAATAATTATATTTATCC
81168 AATATAAAAATAAATAAATAAGTTTATTTCTTTAAATGTGTATGATTAAATCAAAATTAAAGTTT
716 AATATAAAAATAAATAAATAAGTTTATTTCTTTAAATGTGTATGATTAAATCAAAATTAAAGTTT
81233 CAAATATATATTTGAAACACAATTAAAGTTTC
781 CAAATATATATTTGAAACACAATTAAAGTTTC
81265 AC
1 AC
81267 GCATATAATT
Statistics
Matches: 814, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
812 814 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (812 bp):
ACATCATTATTTTTAATAGTTAAATTCAAATCTGAAATGAAAATGATTCTGATTTAGACTAATTT
GAATTCAAAATAACTTAATTCTAATTTTTCCGACTTAAAATTTGACCACAAAATCAAAATAACTC
AAATTAGGAAAGAGTATTATTCAGTTATGACTGATTTAATCGACTTAGTTGACGATTTGATTCAT
TTTAATTAATTCAGTTTTGTCGATTTGGACAGTAGAGTACTGATGACTAAAATTTATAATCGAAT
CGATCAACTTAATTGACTTATATTTATTTATTTATTATTTTTAAATTATTTTAAATATATTTGTA
ATATGTGATATAATTTAAATTACCCAAACTTAAAATCCAATTATCTAACCTAACCCAACCCGAAA
ACCAACTCAAACCCAATTAATGACATCTTAGTAATGAAATCGGTTAACAATATCTTAGTCGATCG
GTTCGGCTATTTTATATTAAGACCGATTAAGTCAGTTAAATTAGAAAAAAAAAATCTAACTGATT
AAAATAATCAAATGATTACTTTTGTCTCAAACTCAAAAAGGATATGTACCAAAATTATACATGAA
TTATGGTTTAATGTGCAATTGTATACATGAAATTTTGATTTGATGCAATTCTTGTAACTTATTAA
CACCATTATTAATATAACATCATTTTATGTTTATATATCGCATGCATGAATAATTATATTTATCC
AATATAAAAATAAATAAATAAGTTTATTTCTTTAAATGTGTATGATTAAATCAAAATTAAAGTTT
CAAATATATATTTGAAACACAATTAAAGTTTC
Found at i:82384 original size:31 final size:31
Alignment explanation
Indices: 82349--82413 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
82339 CAATTTGAAA
* * *
82349 AAACTTAGGCACCAAATTGAACATTGAAGCC
1 AAACTCAGGCACCAAATTAAACATTCAAGCC
82380 AAACTCAGGCACCAAATTAAACATTCAAGCC
1 AAACTCAGGCACCAAATTAAACATTCAAGCC
82411 AAA
1 AAA
82414 TATAGAAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (31 bp):
AAACTCAGGCACCAAATTAAACATTCAAGCC
Found at i:82425 original size:31 final size:31
Alignment explanation
Indices: 82359--82427 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
82349 AAACTTAGGC
* * **
82359 ACCAAATTGAACATTGAAGCCAAACTCAGGC
1 ACCAAATTAAACATTCAAGCCAAACTCAGAA
*
82390 ACCAAATTAAACATTCAAGCCAAA-TATAGAA
1 ACCAAATTAAACATTCAAGCCAAACT-CAGAA
82421 ACCAAAT
1 ACCAAAT
82428 AGTACATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.49, C:0.23, G:0.10, T:0.17
Consensus pattern (31 bp):
ACCAAATTAAACATTCAAGCCAAACTCAGAA
Found at i:83414 original size:381 final size:377
Alignment explanation
Indices: 82711--83475 Score: 1476
Period size: 381 Copynumber: 2.0 Consensus size: 377
82701 GAATAATGAG
82711 AAAATAGTGAAAACTAACCATGAAAGCAAAGCCAGTGACGGTGGCCCAAGAATTAGCAAGCGTGG
1 AAAATAGTGAAAACTAACCATGAAAGCAAAGCCAGTGACGGTGGCCCAAGAATTAGCAAGCGTGG
*
82776 CACCAGCAAGGTGAAGCTCCCCAAGGTGACCGGCAAACATGACAGACACCAAAGTTATGGAATAA
66 CACCAGCAAGCTGAAGCTCCCCAAGGTGACCGGCAAACATGACAGACACCAAAGTTATGGAATAA
82841 TACACAACATTCGTCACAATCATTGGAAGTGAAAACAACACTTGTTTCTTCGCCTCTTCCAAATC
131 TACACAACATTCGTCACAATCATTGGAAGTGAAAACAACACTTGTTTCTTCGCCTCTTCCAAATC
82906 CAAAACATGCTTCCACCACCTCCCATCTTCGTCGTTGTTATCATCGATCTCCGGTAAAAACGGAA
196 CAAAACATGCTTCCACCACCTCCCATCTTCGTCGTTGTTATCATCGATCTCCGGTAAAAACGGAA
82971 CCATTCCTGAAATATTCGTGTTTGACATATCGATTTTCAGAAAAAAGAGAGAGAAAGGAACGGCT
261 CCATTCCTGAAATATTCGTGTTTGACATATCGATTTTCAGAAAAAAGAGAGAGAAAGGAACGGCT
83036 GCTATATCTTCTTCAGTTTCAGTTTTTCTGGGAGCTTTCTGAAGAAGAGGAAAAGC
326 GCTATATCTTCTTCAGTTTCAGTTTTTCTGGGA----TCTGAAGAAGAGGAAAAGC
83092 AAAATAGTGAAAACTAACCATGAAAGCAAAGCCAGTGACGGTGGCCCAAGAATTAGCAAGCGTGG
1 AAAATAGTGAAAACTAACCATGAAAGCAAAGCCAGTGACGGTGGCCCAAGAATTAGCAAGCGTGG
*
83157 CACCAGCAAGCTGAAGCTCCCCAAGGTGATCGGCAAACATGACAGACACCAAAGTTATGGAATAA
66 CACCAGCAAGCTGAAGCTCCCCAAGGTGACCGGCAAACATGACAGACACCAAAGTTATGGAATAA
83222 TACACAACATTCGTCACAATCATTGGAAGTGAAAACAACACTTGTTTCTTCGCCTCTTCCAAATC
131 TACACAACATTCGTCACAATCATTGGAAGTGAAAACAACACTTGTTTCTTCGCCTCTTCCAAATC
83287 CAAAACATGCTTCCACCACCTCCCATCTTCGTCGTTGTTATCATCGATCTCCGGTAAAAACGGAA
196 CAAAACATGCTTCCACCACCTCCCATCTTCGTCGTTGTTATCATCGATCTCCGGTAAAAACGGAA
83352 CCATTCCTGAAATATTCGTGTTTGACATATCGATTTTCAGAAAAAAGAGAGAGAAAGGAACGGCT
261 CCATTCCTGAAATATTCGTGTTTGACATATCGATTTTCAGAAAAAAGAGAGAGAAAGGAACGGCT
83417 GCTATATCTTCTTCAGTTTCAGTTTTTCTGGGATCTGAAGAAGAGGAAAAGC
326 GCTATATCTTCTTCAGTTTCAGTTTTTCTGGGATCTGAAGAAGAGGAAAAGC
83469 AAAATAG
1 AAAATAG
83476 AATGACCTTA
Statistics
Matches: 382, Mismatches: 2, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
377 26 0.07
381 356 0.93
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (377 bp):
AAAATAGTGAAAACTAACCATGAAAGCAAAGCCAGTGACGGTGGCCCAAGAATTAGCAAGCGTGG
CACCAGCAAGCTGAAGCTCCCCAAGGTGACCGGCAAACATGACAGACACCAAAGTTATGGAATAA
TACACAACATTCGTCACAATCATTGGAAGTGAAAACAACACTTGTTTCTTCGCCTCTTCCAAATC
CAAAACATGCTTCCACCACCTCCCATCTTCGTCGTTGTTATCATCGATCTCCGGTAAAAACGGAA
CCATTCCTGAAATATTCGTGTTTGACATATCGATTTTCAGAAAAAAGAGAGAGAAAGGAACGGCT
GCTATATCTTCTTCAGTTTCAGTTTTTCTGGGATCTGAAGAAGAGGAAAAGC
Found at i:85427 original size:20 final size:19
Alignment explanation
Indices: 85402--85447 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
85392 ATCACCACAA
*
85402 AACAACTCTTAATTATTTAG
1 AACAACTCTTAA-TATTGAG
*
85422 AACAAC-CTTTATATTGAG
1 AACAACTCTTAATATTGAG
85440 AACAACTC
1 AACAACTC
85448 AAGTTTGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 12 0.52
19 5 0.22
20 6 0.26
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (19 bp):
AACAACTCTTAATATTGAG
Found at i:87249 original size:14 final size:14
Alignment explanation
Indices: 87223--87260 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
87213 TATATTCAGC
*
87223 TTAA-ATTTAAATT
1 TTAATATTTTAATT
87236 TTAATATTTTAATT
1 TTAATATTTTAATT
87250 TTAAT-TTTTAA
1 TTAATATTTTAA
87261 CATAATGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TTAATATTTTAATT
Found at i:91892 original size:24 final size:24
Alignment explanation
Indices: 91839--91886 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
91829 CATTAATCAA
91839 AATGAAAAATTTACATATCAAGTC
1 AATGAAAAATTTACATATCAAGTC
*
91863 AATGAAAAATTTACATGTCAAGTC
1 AATGAAAAATTTACATATCAAGTC
91887 TTTGAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.29
Consensus pattern (24 bp):
AATGAAAAATTTACATATCAAGTC
Found at i:95300 original size:10 final size:10
Alignment explanation
Indices: 95287--95314 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
95277 GAAAAATTTA
95287 TTATATATAT
1 TTATATATAT
95297 TTATATATAT
1 TTATATATAT
95307 TTATATAT
1 TTATATAT
95315 GAGCCAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATATATAT
Found at i:95889 original size:10 final size:10
Alignment explanation
Indices: 95876--95903 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
95866 GAAAAATTTA
95876 TTATATATAT
1 TTATATATAT
95886 TTATATATAT
1 TTATATATAT
95896 TTATATAT
1 TTATATAT
95904 GAGCCAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATATATAT
Found at i:97307 original size:73 final size:74
Alignment explanation
Indices: 97209--97356 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 74
97199 ACTACCAACA
97209 TTTTAACACTAATTTTAATTTTTATAATTATTTTTGGAAGAAATTTAATTGTTTCTATAATTAGA
1 TTTTAACACTAATTTTAATTTTTATAATTATTTTTGGAAGAAATTTAATTGTTTCTATAATTAGA
97274 AACAAAATT
66 AACAAAATT
97283 TTTTAACACT-ATTTTAATTTTTATAATTATTTTTGGAAGAAATTTAATTGTTTCTATAATTAGA
1 TTTTAACACTAATTTTAATTTTTATAATTATTTTTGGAAGAAATTTAATTGTTTCTATAATTAGA
97347 AACAAAATT
66 AACAAAATT
97356 T
1 T
97357 ATAGCGGAAG
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 64 0.86
74 10 0.14
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (74 bp):
TTTTAACACTAATTTTAATTTTTATAATTATTTTTGGAAGAAATTTAATTGTTTCTATAATTAGA
AACAAAATT
Found at i:98220 original size:14 final size:14
Alignment explanation
Indices: 98201--98229 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98191 GTTTACAAAC
98201 ATGCTTACAGACAT
1 ATGCTTACAGACAT
98215 ATGCTTACAGACAT
1 ATGCTTACAGACAT
98229 A
1 A
98230 CTCGGAACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (14 bp):
ATGCTTACAGACAT
Found at i:100488 original size:26 final size:28
Alignment explanation
Indices: 100454--100506 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
100444 AACAATCATT
100454 GCATAGTCATGAATTAAGC-AATGAAAA
1 GCATAGTCATGAATTAAGCAAATGAAAA
*
100481 GCAT-GTCATGGATTAAGCAAATGAAA
1 GCATAGTCATGAATTAAGCAAATGAAA
100507 GAAAATTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (28 bp):
GCATAGTCATGAATTAAGCAAATGAAAA
Found at i:105407 original size:24 final size:24
Alignment explanation
Indices: 105354--105401 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
105344 CATTAATCAA
105354 AATGAAAAATTTACATATCAAGTC
1 AATGAAAAATTTACATATCAAGTC
*
105378 AATGAAAAATTTATATATCAAGTC
1 AATGAAAAATTTACATATCAAGTC
105402 TTTGAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.31
Consensus pattern (24 bp):
AATGAAAAATTTACATATCAAGTC
Found at i:105530 original size:16 final size:16
Alignment explanation
Indices: 105483--105535 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
105473 TAGCAAATGT
*
105483 TTATTGTTGTAATTAA
1 TTATTTTTGTAATTAA
*
105499 TT-TATTTT-TCA-T-A
1 TTAT-TTTTGTAATTAA
105512 TTATTTTTGTAATTAA
1 TTATTTTTGTAATTAA
105528 TTATTTTT
1 TTATTTTT
105536 TGTATAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 10
0.69 0.07 0.24
Matches are distributed among these distances:
13 7 0.24
14 4 0.14
15 4 0.14
16 14 0.48
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (16 bp):
TTATTTTTGTAATTAA
Found at i:105545 original size:28 final size:29
Alignment explanation
Indices: 105489--105545 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
105479 ATGTTTATTG
*
105489 TTGTAATTAATTTATTTTTCATATTATTT
1 TTGTAATTAATTTATTTTTCATATAATTT
**
105518 TTGTAATTAA-TTATTTTTTGTATAATTT
1 TTGTAATTAATTTATTTTTCATATAATTT
105546 GAATAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (29 bp):
TTGTAATTAATTTATTTTTCATATAATTT
Found at i:107063 original size:20 final size:17
Alignment explanation
Indices: 107023--107055 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
107013 AGACCAAATA
*
107023 CAAATAATAAATAAAAC
1 CAAAAAATAAATAAAAC
107040 CAAAAAATAAATAAAA
1 CAAAAAATAAATAAAA
107056 AGTCCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (17 bp):
CAAAAAATAAATAAAAC
Found at i:108415 original size:9 final size:9
Alignment explanation
Indices: 108401--108432 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
108391 GACCTTCATT
108401 ATTATTATC
1 ATTATTATC
108410 ATTATTATC
1 ATTATTATC
108419 ATT-TT-TC
1 ATTATTATC
108426 ATTATTA
1 ATTATTA
108433 ATACTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 5 0.24
8 4 0.19
9 12 0.57
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (9 bp):
ATTATTATC
Found at i:111112 original size:22 final size:22
Alignment explanation
Indices: 111064--111125 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
111054 TAAAAATTCA
* *
111064 AAAAATTAT-TAAATATTAAATT
1 AAAAATAATATAAATA-TAATTT
*
111086 AAAAATCATATAAATATAATTT
1 AAAAATAATATAAATATAATTT
*
111108 TAAAA-AATATAAA-ATAAT
1 AAAAATAATATAAATATAAT
111126 ATGGGCATGC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 5 0.14
21 7 0.20
22 17 0.49
23 6 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAAATAATATAAATATAATTT
Found at i:111117 original size:21 final size:21
Alignment explanation
Indices: 111084--111125 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
111074 AAATATTAAA
111084 TTAAAAATCATATAAATATAATT
1 TTAAAAA-CATATAAA-ATAATT
111107 TTAAAAA-ATATAAAATAAT
1 TTAAAAACATATAAAATAAT
111126 ATGGGCATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 7 0.37
23 7 0.37
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TTAAAAACATATAAAATAATT
Found at i:120360 original size:22 final size:24
Alignment explanation
Indices: 120316--120361 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
120306 TTTACATGTT
*
120316 CATATATAAAAAATTAAGCTAAAA
1 CATATATAAAAAATTAAGATAAAA
120340 CATATA-AAAAAATTAA-ATAAAA
1 CATATATAAAAAATTAAGATAAAA
120362 TCCTAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 10 0.48
24 6 0.29
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (24 bp):
CATATATAAAAAATTAAGATAAAA
Found at i:123155 original size:16 final size:16
Alignment explanation
Indices: 123124--123156 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
123114 TTCACGTGCT
123124 TAAATTTTAATATAAA
1 TAAATTTTAATATAAA
123140 TAAATATTTAAT-TAAA
1 TAAAT-TTTAATATAAA
123156 T
1 T
123157 CATTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAATTTTAATATAAA
Found at i:123223 original size:22 final size:23
Alignment explanation
Indices: 123196--123242 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
123186 TTAAAGTTAA
* *
123196 TTTTAT-ATATATATTTTAAATT
1 TTTTATAAAATATATATTAAATT
123218 TTTTATAAAATATATATTAAATT
1 TTTTATAAAATATATATTAAATT
123241 TT
1 TT
123243 AATAAACATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTATAAAATATATATTAAATT
Found at i:123383 original size:20 final size:21
Alignment explanation
Indices: 123360--123398 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
123350 CGTTTATTTT
* *
123360 ATCTGATTTTAATT-TTTTCC
1 ATCTAATTATAATTGTTTTCC
123380 ATCTAATTATAATTGTTTT
1 ATCTAATTATAATTGTTTT
123399 TAAAAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.59
Consensus pattern (21 bp):
ATCTAATTATAATTGTTTTCC
Found at i:131960 original size:105 final size:105
Alignment explanation
Indices: 131787--131999 Score: 284
Period size: 105 Copynumber: 2.0 Consensus size: 105
131777 ACCATTAACT
*
131787 AATGTATTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTC
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTC
* * *
131852 AGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
* * * * *
131892 AATGTACTATACGTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACGATCT-CTA
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCT-
* * * * *
131956 CAGCTTTAGAAATCGTTCCTTCCTTGCAAAGAGCATCAATC
65 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
131997 AAT
1 AAT
132000 AACGTATATG
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 2 0.02
105 91 0.98
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTC
AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
Found at i:135196 original size:11 final size:11
Alignment explanation
Indices: 135180--135204 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
135170 TTCCTTCACC
135180 CATGAACCGTA
1 CATGAACCGTA
135191 CATGAACCGTA
1 CATGAACCGTA
135202 CAT
1 CAT
135205 ACATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (11 bp):
CATGAACCGTA
Found at i:139035 original size:22 final size:22
Alignment explanation
Indices: 139003--139060 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
138993 AATGTTTTGT
*
139003 TGTCTTGAGACTT-AGGTCATTA
1 TGTCTTGAGACTTGA-GTCATGA
139025 TGTC-TGAAGACTTGAGTCATGA
1 TGTCTTG-AGACTTGAGTCATGA
139047 TGTCTTGAGACTTG
1 TGTCTTGAGACTTG
139061 CTTGGTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 2 0.06
22 27 0.84
23 3 0.09
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (22 bp):
TGTCTTGAGACTTGAGTCATGA
Found at i:144077 original size:14 final size:14
Alignment explanation
Indices: 144058--144086 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
144048 GTAACCGTAA
144058 AGGGGGGACGATAC
1 AGGGGGGACGATAC
144072 AGGGGGGACGATAC
1 AGGGGGGACGATAC
144086 A
1 A
144087 AAATGTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.48, T:0.07
Consensus pattern (14 bp):
AGGGGGGACGATAC
Found at i:144891 original size:16 final size:16
Alignment explanation
Indices: 144835--144891 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
144825 GTTTGATAAT
144835 GATATTGAAATTTGTTA
1 GATATTG-AATTTGTTA
* * *
144852 GATTTTGAAATTATTA
1 GATATTGAATTTGTTA
*
144868 TG-TCTTGAATTTGTTA
1 -GATATTGAATTTGTTA
144884 GATATTGA
1 GATATTGA
144892 TTATGTTTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
15 1 0.03
16 23 0.74
17 7 0.23
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.49
Consensus pattern (16 bp):
GATATTGAATTTGTTA
Found at i:144930 original size:32 final size:32
Alignment explanation
Indices: 144846--144983 Score: 153
Period size: 32 Copynumber: 4.5 Consensus size: 32
144836 ATATTGAAAT
* * * *
144846 TTGTTAGATTTTGAAATTATTATGTCTTGAA-T
1 TTGTTAGATATTGAATTTATTATGT-TTTAAGC
144878 TTGTTAGATATTG-----ATTATGTTTTAAGC
1 TTGTTAGATATTGAATTTATTATGTTTTAAGC
*
144905 TTGTTAGATGTTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTGAATTTATTATGTTTTAAGC
* *
144937 TTATTCGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTGAATTTATTATGTTTTAAGC
*
144969 TTGTTGGATATTGAA
1 TTGTTAGATATTGAA
144984 ATGATTGACA
Statistics
Matches: 91, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.04
27 19 0.21
32 68 0.75
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (32 bp):
TTGTTAGATATTGAATTTATTATGTTTTAAGC
Found at i:144947 original size:59 final size:60
Alignment explanation
Indices: 144846--144985 Score: 149
Period size: 59 Copynumber: 2.3 Consensus size: 60
144836 ATATTGAAAT
* * *
144846 TTGTTAGATTTTGAAATTATTATGTCTTGAATTTGTTAGATATTG-ATTATGTTTTAAGC
1 TTGTTAGATATTGAAATTATTATGTCTTGAACTTATTAGATATTGTATTATGTTTTAAGC
* * * *
144905 TTGTTAGATGTTGAATTTATTATGT-TTTAAGCTTATTCGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTGAAATTATTATGTCTTGAA-CTTATTAGATATTG----TATTATGTTTTAAGC
*
144969 TTGTTGGATATTGAAAT
1 TTGTTAGATATTGAAAT
144986 GATTGACAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
58 4 0.06
59 34 0.52
64 28 0.42
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (60 bp):
TTGTTAGATATTGAAATTATTATGTCTTGAACTTATTAGATATTGTATTATGTTTTAAGC
Found at i:146344 original size:20 final size:20
Alignment explanation
Indices: 146307--146368 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
146297 CAAACATCAA
146307 AAAAGTAAATCA-TTTCCAG
1 AAAAGTAAATCATTTTCCAG
*
146326 AACAGTAAATCATTTTCCAG
1 AAAAGTAAATCATTTTCCAG
146346 AAAAGTAAATCATTTTCCAG
1 AAAAGTAAATCATTTTCCAG
146366 AAA
1 AAA
146369 TCATTTTTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 11 0.28
20 29 0.73
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCCAG
Found at i:147057 original size:13 final size:12
Alignment explanation
Indices: 147040--147078 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
147030 TATAATTTTG
147040 ATATTTTTAAAT
1 ATATTTTTAAAT
*
147052 ATTATTTATAAAT
1 A-TATTTTTAAAT
147065 ATATTTTATAAAT
1 ATATTTT-TAAAT
147078 A
1 A
147079 AAAAAATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATATTTTTAAAT
Found at i:149282 original size:15 final size:14
Alignment explanation
Indices: 149259--149311 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
149249 GTTTTTATAT
*
149259 TAATTATAAAGGTTA
1 TAATAATAAA-GTTA
149274 TAATAATAAA-TTA
1 TAATAATAAAGTTA
*
149287 TATATTATAAAGTTA
1 TA-ATAATAAAGTTA
*
149302 TTATAATAAA
1 TAATAATAAA
149312 AACAAAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 14 0.44
15 13 0.41
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
TAATAATAAAGTTA
Found at i:150261 original size:44 final size:43
Alignment explanation
Indices: 150213--150329 Score: 146
Period size: 44 Copynumber: 2.7 Consensus size: 43
150203 TGTGTGTTAT
* * *
150213 CGTGTAAGACCATGTCTGGGACGTTCGCATCGATTTGTGATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGT-AATTA
* *
150257 CGTGTAAGACCCTATCTGGGACAG-TGGCATCGATATGTAATTA
1 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATGTAATTA
* *
150300 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
150330 TGTATCAGCT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
42 1 0.02
43 28 0.45
44 32 0.52
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTAATTA
Found at i:153633 original size:60 final size:61
Alignment explanation
Indices: 153539--153659 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 61
153529 CACTTTACGC
153539 GATTTAGTTCTTTTTATCAAATTGAGCATGTAAATGGTAAAATTTCTTAACAAAAATTTTA
1 GATTTAGTTCTTTTTATCAAATTGAGCATGTAAATGGTAAAATTTCTTAACAAAAATTTTA
153600 GATTTAGTTC-TTTTATCAAATTGAGCATGTAAATGGTAAAATTTCTTAACAAAAATTTTA
1 GATTTAGTTCTTTTTATCAAATTGAGCATGTAAATGGTAAAATTTCTTAACAAAAATTTTA
153660 TACGGTAATA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
60 50 0.83
61 10 0.17
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (61 bp):
GATTTAGTTCTTTTTATCAAATTGAGCATGTAAATGGTAAAATTTCTTAACAAAAATTTTA
Found at i:154237 original size:12 final size:12
Alignment explanation
Indices: 154217--154299 Score: 85
Period size: 12 Copynumber: 6.9 Consensus size: 12
154207 TGATGGTAGG
* *
154217 ATCTATATCTAC
1 ATCTGTATCTGC
**
154229 ATCTGTATCTAT
1 ATCTGTATCTGC
*
154241 ATCTGTATCTGT
1 ATCTGTATCTGC
* *
154253 ATCTATATTTGC
1 ATCTGTATCTGC
154265 ATCTGTATCTGC
1 ATCTGTATCTGC
* *
154277 ACCTGTATCTGT
1 ATCTGTATCTGC
154289 ATCTGTATCTG
1 ATCTGTATCTG
154300 TATATGTATA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 60 1.00
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (12 bp):
ATCTGTATCTGC
Found at i:154238 original size:6 final size:6
Alignment explanation
Indices: 154229--154340 Score: 107
Period size: 6 Copynumber: 18.7 Consensus size: 6
154219 CTATATCTAC
* * * * *
154229 ATCTGT ATCTAT ATCTGT ATCTGT ATCTAT ATTTGC ATCTGT ATCTGC
1 ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT
* * * * * *
154277 ACCTGT ATCTGT ATCTGT ATCTGT ATATGT ATATGT ATTTAT ATCTAT
1 ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT
* *
154325 AACTGC ATCTGT ATCT
1 ATCTGT ATCTGT ATCT
154341 AAAATTTTCA
Statistics
Matches: 85, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 85 1.00
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.47
Consensus pattern (6 bp):
ATCTGT
Found at i:154341 original size:18 final size:18
Alignment explanation
Indices: 154217--154299 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 18
154207 TGATGGTAGG
*
154217 ATCTATATCTACATCTGT
1 ATCTATATCTGCATCTGT
*
154235 ATCTATATCTGTATCTGT
1 ATCTATATCTGCATCTGT
*
154253 ATCTATATTTGCATCTGT
1 ATCTATATCTGCATCTGT
** * *
154271 ATCTGCACCTGTATCTGT
1 ATCTATATCTGCATCTGT
*
154289 ATCTGTATCTG
1 ATCTATATCTG
154300 TATATGTATA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (18 bp):
ATCTATATCTGCATCTGT
Found at i:155545 original size:36 final size:35
Alignment explanation
Indices: 155468--155545 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 35
155458 AAAGGAAACT
* *
155468 AAAAATTTCTTATAATCATTTTCACCAAATATTTA
1 AAAAATTTCTAATAATCATTTTCACCAAATACTTA
* * *
155503 ATAAAATTTCTAATAATTATTTTTACTAAATGACTTA
1 A-AAAATTTCTAATAATCATTTTCACCAAAT-ACTTA
155540 AAAAAT
1 AAAAAT
155546 ATAAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 1 0.03
36 30 0.83
37 5 0.14
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.42
Consensus pattern (35 bp):
AAAAATTTCTAATAATCATTTTCACCAAATACTTA
Found at i:156019 original size:17 final size:16
Alignment explanation
Indices: 155974--156020 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
155964 GCAGGGCAGC
155974 AGAAAAGAAGAAAAGA
1 AGAAAAGAAGAAAAGA
* *
155990 AAAAAAGGGAGAAAAGA
1 AGAAAA-GAAGAAAAGA
156007 AGAAGAAGAAGAAA
1 AGAA-AAGAAGAAA
156021 TGAACATACC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 5 0.20
17 18 0.72
18 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AGAAAAGAAGAAAAGA
Found at i:162757 original size:21 final size:22
Alignment explanation
Indices: 162728--162774 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
162718 CAGAAGGAGT
*
162728 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
162750 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
162771 GAGT
1 GAGT
162775 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:165667 original size:30 final size:31
Alignment explanation
Indices: 165631--165693 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
165621 GTATTTTATA
*
165631 TTTTTTTGGTATAGATA-TTAGATGGAGATT
1 TTTTTTTCGTATAGATAGTTAGATGGAGATT
* *
165661 TTTTTTTCTTATGGATATGTTAGATGGAGATT
1 TTTTTTTCGTATAGATA-GTTAGATGGAGATT
165693 T
1 T
165694 AATTGGTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 14 0.50
32 14 0.50
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.52
Consensus pattern (31 bp):
TTTTTTTCGTATAGATAGTTAGATGGAGATT
Found at i:167064 original size:18 final size:20
Alignment explanation
Indices: 167017--167064 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 20
167007 AAATCATTGC
167017 AATATATGTAAATATAATTT
1 AATATATGTAAATATAATTT
* *
167037 AA-A-ATATAAAT-TTA-TT
1 AATATATGTAAATATAATTT
167053 AATATATGTAAA
1 AATATATGTAAA
167065 AACATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
16 4 0.17
17 3 0.13
18 13 0.57
19 1 0.04
20 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (20 bp):
AATATATGTAAATATAATTT
Found at i:167184 original size:20 final size:19
Alignment explanation
Indices: 167142--167185 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
167132 TCCAAACACC
*
167142 AGAAAAATAAATCATTTCT
1 AGAAAAATAAATCATTTCA
*
167161 AGAAAAGTAAATCATTTTCA
1 AGAAAAATAAATCA-TTTCA
167181 AGAAA
1 AGAAA
167186 TCATTTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (19 bp):
AGAAAAATAAATCATTTCA
Found at i:167831 original size:28 final size:28
Alignment explanation
Indices: 167795--167854 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
167785 AAATTATTAA
* * *
167795 AAATTAAAATTAAAAATTGTTTTAGTTG
1 AAATAAAAATTAAAAATTGCTTTAGTTC
167823 AAATAAAAATTAAAAATTGCTTTAGTTC
1 AAATAAAAATTAAAAATTGCTTTAGTTC
167851 AAAT
1 AAAT
167855 GTAAAGGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.38
Consensus pattern (28 bp):
AAATAAAAATTAAAAATTGCTTTAGTTC
Found at i:167865 original size:28 final size:28
Alignment explanation
Indices: 167806--167865 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
167796 AATTAAAATT
* * **
167806 AAAAATTGTTTTAGTTGAAATAAAAATT
1 AAAAATTGCTTTAGTTCAAATAAAAAGG
**
167834 AAAAATTGCTTTAGTTCAAATGTAAAGG
1 AAAAATTGCTTTAGTTCAAATAAAAAGG
167862 AAAA
1 AAAA
167866 GATTTATATG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.33
Consensus pattern (28 bp):
AAAAATTGCTTTAGTTCAAATAAAAAGG
Found at i:172878 original size:21 final size:21
Alignment explanation
Indices: 172840--172880 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
172830 TAAAATACTT
*
172840 TTCATATTATTTCATCTTATG
1 TTCAAATTATTTCATCTTATG
172861 TTCAAATT-TTTCATTCTTAT
1 TTCAAATTATTTCA-TCTTAT
172881 ACGAATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.15, G:0.02, T:0.59
Consensus pattern (21 bp):
TTCAAATTATTTCATCTTATG
Found at i:173244 original size:55 final size:56
Alignment explanation
Indices: 173171--173284 Score: 169
Period size: 60 Copynumber: 2.0 Consensus size: 56
173161 AATTCACTAG
173171 AATAATATAATCCTCCAAACACACC-AATATATCATAATCCTCCCAAACACACCAA
1 AATAATATAATCCTCCAAACACACCAAATATATCATAATCCTCCCAAACACACCAA
173226 AATAATAT-ATCCTCCCAAACACACCAGTATAATATATCATAATCCTCCCAAACACACCA
1 AATAATATAATCCT-CCAAACACACC---A-AATATATCATAATCCTCCCAAACACACCA
173285 GTAAGGCATT
Statistics
Matches: 53, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
54 5 0.09
55 19 0.36
60 29 0.55
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (56 bp):
AATAATATAATCCTCCAAACACACCAAATATATCATAATCCTCCCAAACACACCAA
Found at i:173285 original size:33 final size:32
Alignment explanation
Indices: 173177--173288 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 32
173167 CTAGAATAAT
173177 ATAATCCT-CCAAACACACC----AATATATC
1 ATAATCCTCCCAAACACACCAGTAAATATATC
173204 ATAATCCTCCCAAACACACCA--AAATA-AT-
1 ATAATCCTCCCAAACACACCAGTAAATATATC
173232 AT-ATCCTCCCAAACACACCAGTATAATATATC
1 ATAATCCTCCCAAACACACCAGTA-AATATATC
173264 ATAATCCTCCCAAACACACCAGTAA
1 ATAATCCTCCCAAACACACCAGTAA
173289 GGCATTAAAT
Statistics
Matches: 76, Mismatches: 0, Indels: 13
0.85 0.00 0.15
Matches are distributed among these distances:
27 26 0.34
28 13 0.17
29 3 0.04
30 8 0.11
31 2 0.03
32 3 0.04
33 21 0.28
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.21
Consensus pattern (32 bp):
ATAATCCTCCCAAACACACCAGTAAATATATC
Found at i:174747 original size:22 final size:22
Alignment explanation
Indices: 174717--174759 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
174707 ACACCAAAAC
* *
174717 AGGCTTTTAGTGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
174739 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
174760 AGCGCCGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:174799 original size:15 final size:15
Alignment explanation
Indices: 174776--174813 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
174766 GCAGGCTTTT
*
174776 AGCGGCGCTTTGAAA
1 AGCGCCGCTTTGAAA
174791 AGCGCCGCTTTGAAA
1 AGCGCCGCTTTGAAA
174806 AGCGCCGC
1 AGCGCCGC
174814 AACAGACGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.16
Consensus pattern (15 bp):
AGCGCCGCTTTGAAA
Found at i:175093 original size:86 final size:86
Alignment explanation
Indices: 175037--175267 Score: 257
Period size: 87 Copynumber: 2.7 Consensus size: 86
175027 TTTTTTTCTC
**
175037 AAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTAAT
1 AAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACAGAAT
*
175102 CTTTAGCGACGCTTTTCCCTA
66 ATTTAGCGACGCTTTTCCCTA
* * * * * **
175123 AAACACCGCTATAAACCCTGATCTATAGCGGCGCTTCGACCACAAAATGCCACTAAAGAACCTAA
1 AAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCAC-AAACGCCACTAAAGAACAGAA
* * * *
175188 TCTTTAGCGGCGCTTTCCCCAA
65 TATTTAGCGACGCTTTTCCCTA
* * * ** *
175210 AAACGCCGCTAA-AGACCATGATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGA
1 AAACGCCGC-AATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGA
175268 CCCTTATCTT
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
86 52 0.42
87 71 0.57
88 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (86 bp):
AAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACAGAAT
ATTTAGCGACGCTTTTCCCTA
Found at i:175298 original size:86 final size:86
Alignment explanation
Indices: 175037--175309 Score: 343
Period size: 86 Copynumber: 3.2 Consensus size: 86
175027 TTTTTTTCTC
*
175037 AAACGCCGC-AATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTAA
1 AAACGCCGCTAA-AGACCATGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTAA
* * *
175101 TCTTTAGCGACGCTTTTCCCTA
65 TCTTTAGCGGCGCTTTCCCCAA
* * * *
175123 AAACACCGCTATAA-ACCCTGATCTATAGCGGCGCTTCGACCACAAAATGCCACTAAAGAACCTA
1 AAACGCCGCTA-AAGACCATGATCTATAGCGGCGCTTTGACCAC-AAACGCCACTAAAGAACCTA
175187 ATCTTTAGCGGCGCTTTCCCCAA
64 ATCTTTAGCGGCGCTTTCCCCAA
* * ** * * *
175210 AAACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTAT
1 AAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTAAT
**
175275 CTTTAGCGGCGCTTTGACCAA
66 CTTTAGCGGCGCTTTCCCCAA
*
175296 AAACGCCACTAAAG
1 AAACGCCGCTAAAG
175310 GCCAACACCT
Statistics
Matches: 163, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
86 88 0.54
87 74 0.45
88 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTAAT
CTTTAGCGGCGCTTTCCCCAA
Found at i:175300 original size:43 final size:43
Alignment explanation
Indices: 174954--175309 Score: 286
Period size: 43 Copynumber: 8.3 Consensus size: 43
174944 TTAGTGGAAG
* * * *
174954 CGCCGCTAAAGACCCTGATCTTTAGCGGCG-TTTGTGCTAGAAG
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTG-ACCAAAAA
* * ** * * * *** **
174997 CGCCGTTAAAGATCAGGGTATTTAGCGGCGTTTTTTTCTCAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* *
175040 CGCCGC-AATAGACCCTGATCTATAGCGGCGCTTTGACCACAAA
1 CGCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* * * * ** *
175083 CGCCACTAAAGAACCTAATCTTTAGCGACGCTTTTCCCTAAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* * *
175126 CACCGCTATAA-ACCCTGATCTATAGCGGCGCTTCGACCACAAAA
1 CGCCGCTA-AAGACCCTGATCTTTAGCGGCGCTTTGACCA-AAAA
* * * * **
175170 TGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCAAAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* * ** *
175213 CGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCACAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
*
175256 CGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
*
175299 CGCCACTAAAG
1 CGCCGCTAAAG
175310 GCCAACACCT
Statistics
Matches: 238, Mismatches: 69, Indels: 12
0.75 0.22 0.04
Matches are distributed among these distances:
42 2 0.01
43 198 0.83
44 38 0.16
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
Found at i:175570 original size:21 final size:21
Alignment explanation
Indices: 175466--175567 Score: 123
Period size: 21 Copynumber: 4.9 Consensus size: 21
175456 TTTGACGCTG
175466 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
175487 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
175508 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
175529 CTGTACTTCTCTAGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
175550 CTCTGCTTCTCTTGCTGC
1 CTCTGCTTCCCTCGCTGC
175568 CGCATCTACT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.05, C:0.43, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:175633 original size:66 final size:66
Alignment explanation
Indices: 175549--175695 Score: 190
Period size: 66 Copynumber: 2.2 Consensus size: 66
175539 CTAGCTGCCG
* * *
175549 CCTCTGCTTCTCTTGCTGCCGCATCTACTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCCACATCTACTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
175612 GAA
64 GAA
* * * * *
175615 CCTCAGCTTCTCTCGCTGCTACATCTTCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCCACATCTACTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
175680 A
66 A
175681 CCTCAGCTTCTCTCG
1 CCTCAGCTTCTCTCG
175696 ATGTTGCCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
65 1 0.01
66 66 0.93
67 4 0.06
ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCCACATCTACTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:175717 original size:66 final size:66
Alignment explanation
Indices: 175588--175718 Score: 174
Period size: 66 Copynumber: 2.0 Consensus size: 66
175578 TTAAGCTGCT
* ** *
175588 GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCTACATCTTCTTTCAGTTGT
1 GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGCTACATCCGCTTTAAGTTGT
175653 A
66 A
* * * *
175654 GCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTG
1 GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATGCTACATCCGCTTTAAGTTG
175718 T
65 T
175719 GTAATTTGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 52 0.93
67 4 0.07
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.42
Consensus pattern (66 bp):
GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGCTACATCCGCTTTAAGTTGT
A
Found at i:191315 original size:41 final size:41
Alignment explanation
Indices: 191204--191481 Score: 235
Period size: 41 Copynumber: 6.8 Consensus size: 41
191194 TTTTGTTACT
* * *
191204 ATTAGCGGCGCTTCGGA-AAAAACGCCGCTAAATG---TAGC
1 ATTAGCGGCGC-TCAGATAAAAACGCCGCTAAAGGACAGAGC
* * * *
191242 ATTAGCGGCGCTTACATATAAAACGCCGCTAAAGGCCAGAGT
1 ATTAGCGGCGCTCAGATA-AAAACGCCGCTAAAGGACAGAGC
* * * *
191284 ATTAGTGGCGCTCAGATAAAAACGCCACTAAA-AACACGAAC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACA-GAGC
* * * * * *
191325 TTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACAAAGA
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAGC
* * * * * *
191366 ATTAGTGGCGCTCAGACAATAACGCCACT-AATGATACGAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACA-GAGC
* * *
191407 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGACAGAAC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAGC
*
191448 ATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGG
191482 TTTAAAAATC
Statistics
Matches: 188, Mismatches: 43, Indels: 15
0.76 0.17 0.06
Matches are distributed among these distances:
37 2 0.01
38 12 0.06
39 15 0.08
40 6 0.03
41 127 0.68
42 26 0.14
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAGC
Found at i:191370 original size:82 final size:82
Alignment explanation
Indices: 191241--191479 Score: 309
Period size: 82 Copynumber: 2.9 Consensus size: 82
191231 CTAAATGTAG
* * * * *
191241 CATTAGCGGCGCTTACATATAAAACGCCGCTAAAGGCCAGAGTATTAGTGGCGCTCAGATAAAAA
1 CATTAGCGGCGCTTAGA-AAAAAACGCCGCTAAAGGACAAAGAATTAGTGGCGCTCAGATAAAAA
191306 CGCCACTAAAAACACGAA
65 CGCCACTAAAAACACGAA
* * * *
191324 CTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACAAAGAATTAGTGGCGCTCAGACAATAAC
1 CATTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGGACAAAGAATTAGTGGCGCTCAGATAAAAAC
** * *
191389 GCCACTAATGATACGAG
66 GCCACTAAAAACACGAA
* *
191406 CATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGACAGAA-CATTAGTGGCGCTCAGATAAAAA
1 CATTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGGACA-AAGAATTAGTGGCGCTCAGATAAAAA
*
191470 CGCCGCTAAA
65 CGCCACTAAA
191480 GGTTTAAAAA
Statistics
Matches: 134, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
82 117 0.87
83 17 0.13
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.16
Consensus pattern (82 bp):
CATTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGGACAAAGAATTAGTGGCGCTCAGATAAAAAC
GCCACTAAAAACACGAA
Found at i:200205 original size:22 final size:22
Alignment explanation
Indices: 200179--200223 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
200169 TTTTTAAAAT
200179 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAA-TATAAAAATATA
*
200201 TAAATATTAATATAAACATATA
1 TAAATATTAATATAAAAATATA
200223 T
1 T
200224 TAATCAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAATATTAATATAAAAATATA
Found at i:200397 original size:13 final size:13
Alignment explanation
Indices: 200379--200404 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
200369 TATCCCTCAT
200379 TACAATTTTGAAA
1 TACAATTTTGAAA
200392 TACAATTTTGAAA
1 TACAATTTTGAAA
200405 ACATTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
TACAATTTTGAAA
Found at i:202189 original size:26 final size:28
Alignment explanation
Indices: 202154--202206 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
202144 GGTAATTTTC
202154 TTTCATTTGCTTAATCCATGAC-ATGCT
1 TTTCATTTGCTTAATCCATGACTATGCT
*
202181 TTTCA-TTGCTTAATTCATGACTATGC
1 TTTCATTTGCTTAATCCATGACTATGC
202207 AATGATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (28 bp):
TTTCATTTGCTTAATCCATGACTATGCT
Found at i:204890 original size:32 final size:34
Alignment explanation
Indices: 204835--204899 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 34
204825 ACTTGAATTC
204835 AATTTAAATAATAAAAGATA-TTTTTAAAATTTA
1 AATTTAAATAATAAAAGATATTTTTTAAAATTTA
* *
204868 AATTTAATTAA-AAAATATATTTTTTAAAATTT
1 AATTTAAATAATAAAAGATATTTTTTAAAATTT
204900 TATTATTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 7 0.24
33 22 0.76
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (34 bp):
AATTTAAATAATAAAAGATATTTTTTAAAATTTA
Found at i:206511 original size:89 final size:88
Alignment explanation
Indices: 206359--206600 Score: 274
Period size: 89 Copynumber: 2.7 Consensus size: 88
206349 TAAAAAGTCT
* * ** * * *
206359 TCAAAATTTTTCAAAAAAAGCCATTAAGCCCTTGATTTTATTTTGCACTCACTTTGGTACTTGAA
1 TCAAACTTTTTC--AAAAAGCAATTAAGCCCCAGATTTTATTTTTCACTCAATTGGGTACTTGAA
*
206424 CTTTCAAAATGTAT-CAAAAGGACCC
64 CTTTCAAAATGTATAAAAAAGG-CCC
*
206449 TCAAACTTTTTCAAAAATGCAATTAAGCCCCAGCTTTTATTTTTCACTCAATTGGGTACTTGAAC
1 TCAAACTTTTTCAAAAA-GCAATTAAGCCCCAGATTTTATTTTTCACTCAATTGGGTACTTGAAC
* *
206514 TTTCAAATTGTATAAAAAAGGCCT
65 TTTCAAAATGTATAAAAAAGGCCC
* * * *
206538 TCAAACTTTTTTAAAAA-AAATTAAGCCCCCGAATTTT-TTTTTGCACTCAATTGGGTATTTGAA
1 TCAAACTTTTTCAAAAAGCAATTAAGCCCCAG-ATTTTATTTTT-CACTCAATTGGGTACTTGAA
206601 TGGTCAACTG
Statistics
Matches: 132, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
87 17 0.13
88 28 0.21
89 70 0.53
90 17 0.13
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (88 bp):
TCAAACTTTTTCAAAAAGCAATTAAGCCCCAGATTTTATTTTTCACTCAATTGGGTACTTGAACT
TTCAAAATGTATAAAAAAGGCCC
Found at i:206647 original size:20 final size:21
Alignment explanation
Indices: 206602--206648 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
206592 GTATTTGAAT
206602 GGTCAACTGTTAAAGTTTAAC
1 GGTCAACTGTTAAAGTTTAAC
*
206623 AGTCAACTGTTAAAG-TTAAC
1 GGTCAACTGTTAAAGTTTAAC
206643 GGTCAA
1 GGTCAA
206649 ATGGTCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (21 bp):
GGTCAACTGTTAAAGTTTAAC
Found at i:209461 original size:40 final size:41
Alignment explanation
Indices: 209399--209515 Score: 98
Period size: 40 Copynumber: 2.9 Consensus size: 41
209389 GTTTGGAACA
* * *
209399 AAAGCGCCAC-AACAAATCGAGCATTAGCGGCGATTTA-GCC
1 AAAGCGCCGCTAA-AAATAGAGCATTAGCGGCGATTTATCCC
** * * *
209439 AAAGCGCCGCTAAAGGTAGAGCATCAGTGACGA-TTATCCC
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTATCCC
* * *
209479 GAAGCGCCGCTAAAAATAG-GAATTAGCGGCGTTTTAT
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTAT
209516 ATAAAGCGCC
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
39 11 0.19
40 45 0.78
41 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (41 bp):
AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTATCCC
Found at i:209701 original size:41 final size:41
Alignment explanation
Indices: 209641--209817 Score: 248
Period size: 41 Copynumber: 4.3 Consensus size: 41
209631 TCCTCGAGTC
* * *
209641 TTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCAGATAT
1 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGATCT
*
209682 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGGTCT
1 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGATCT
* *
209723 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTTGGGGTCT
1 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGC-TCGGATCT
* * *
209765 TTAGCGGCGTTTTTATAC-AAGCGCCGCCAATGCTCGGATCT
1 TTAGCGGCGTTTTT-TTCTATGCGCCGCTAATGCTCGGATCT
209806 TTAGCGGCGTTT
1 TTAGCGGCGTTT
209818 CTAACTGAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
41 88 0.71
42 34 0.27
43 2 0.02
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.37
Consensus pattern (41 bp):
TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGATCT
Found at i:209797 original size:83 final size:82
Alignment explanation
Indices: 209633--209817 Score: 248
Period size: 83 Copynumber: 2.3 Consensus size: 82
209623 CGTTTTTATC
*
209633 CTCGAGTC-TTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCAGATATTTAGCGGCGTTTTTT
1 CTCGGGTCTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCAGATATTTAGCGGCGTTTTTT
* * *
209697 TCTATGCGCCGCTAATG
66 ACTAAGCGCCGCCAATG
* ** * *
209714 CTCGGGTCTTTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTTGGGGTCTTTAGCGGCGTTTTT
1 CTCGGGTCTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGC-TCAGATATTTAGCGGCGTTTTT
209779 ATAC-AAGCGCCGCCAATG
65 -TACTAAGCGCCGCCAATG
*
209797 CTCGGATCTTTAGCGGCGTTT
1 CTCGGGTCTTTAGCGGCGTTT
209818 CTAACTGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
81 7 0.08
82 32 0.35
83 50 0.55
84 2 0.02
ACGTcount: A:0.14, C:0.24, G:0.26, T:0.36
Consensus pattern (82 bp):
CTCGGGTCTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCAGATATTTAGCGGCGTTTTTT
ACTAAGCGCCGCCAATG
Found at i:209829 original size:41 final size:41
Alignment explanation
Indices: 209641--209878 Score: 221
Period size: 41 Copynumber: 5.8 Consensus size: 41
209631 TCCTCGAGTC
** * *
209641 TTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCAGATAT
1 TTAGCGGCGTTTTTAACTATGCGCCGCTAATGCTCGGATCT
** *
209682 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGGTCT
1 TTAGCGGCGTTTTTAACTATGCGCCGCTAATGCTCGGATCT
** * *
209723 TTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTTGGGGTCT
1 TTAGCGGCGTTTTTAACTATGCGCCGCTAATGC-TCGGATCT
* *
209765 TTAGCGGCGTTTTTATAC-AAGCGCCGCCAATGCTCGGATCT
1 TTAGCGGCGTTTTTA-ACTATGCGCCGCTAATGCTCGGATCT
* * * *
209806 TTAGCGGCGTTTCTAACTGA-GCGCCACTAATTCTCTTG-TCT
1 TTAGCGGCGTTTTTAACT-ATGCGCCGCTAATGCTC-GGATCT
* * * * *
209847 TCAGCAGCGTTTGTATCTAAGCGCCGCTAATG
1 TTAGCGGCGTTTTTAACTATGCGCCGCTAATG
209879 TATTGACCTT
Statistics
Matches: 169, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
40 3 0.02
41 129 0.76
42 36 0.21
43 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAACTATGCGCCGCTAATGCTCGGATCT
Found at i:209871 original size:124 final size:124
Alignment explanation
Indices: 209641--209878 Score: 291
Period size: 124 Copynumber: 1.9 Consensus size: 124
209631 TCCTCGAGTC
* * * * **
209641 TTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCAGATATTTAGCGGCGTTTTTTTCTATGCGC
1 TTAGCGGCGTTTTTATCTAAGCGCCGCCAATGCTCAGATATTTAGCGGCGTTTCTAACTATGCGC
* * * * * *
209706 CGCTAATGCTCGGGTCTTTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTTGGGGTCT
66 CACTAATGCTCGGGTCTTCAGCAGCGTTTGTATCTAAGCGCCGCTAATGCTTGGGGTCT
* *
209765 TTAGCGGCGTTTTTATAC-AAGCGCCGCCAATGCTCGGATCTTTAGCGGCGTTTCTAACTGA-GC
1 TTAGCGGCGTTTTTAT-CTAAGCGCCGCCAATGCTCAGATATTTAGCGGCGTTTCTAACT-ATGC
* **
209828 GCCACTAATTCTCTTGTCTTCAGCAGCGTTTGTATCTAAGCGCCGCTAATG
64 GCCACTAATGCTCGGGTCTTCAGCAGCGTTTGTATCTAAGCGCCGCTAATG
209879 TATTGACCTT
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
124 93 0.98
125 2 0.02
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (124 bp):
TTAGCGGCGTTTTTATCTAAGCGCCGCCAATGCTCAGATATTTAGCGGCGTTTCTAACTATGCGC
CACTAATGCTCGGGTCTTCAGCAGCGTTTGTATCTAAGCGCCGCTAATGCTTGGGGTCT
Found at i:232158 original size:30 final size:30
Alignment explanation
Indices: 232082--232158 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 30
232072 TTAAAATGAG
* *
232082 GCAACATAGCAGCAACATGCAAGCAACCAA
1 GCAACACAGCAGCAGCATGCAAGCAACCAA
* * * * *
232112 GCAGCACAACATCAGCATGCAAGTAACCGA
1 GCAACACAGCAGCAGCATGCAAGCAACCAA
*
232142 GCAACTCAGCAGCAGCA
1 GCAACACAGCAGCAGCA
232159 GGCTAATGTC
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.42, C:0.31, G:0.19, T:0.08
Consensus pattern (30 bp):
GCAACACAGCAGCAGCATGCAAGCAACCAA
Found at i:247140 original size:12 final size:12
Alignment explanation
Indices: 247123--247147 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
247113 GTTTTAGAAC
247123 ACTTACAGTAAT
1 ACTTACAGTAAT
247135 ACTTACAGTAAT
1 ACTTACAGTAAT
247147 A
1 A
247148 GTTTTAGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ACTTACAGTAAT
Found at i:247617 original size:226 final size:227
Alignment explanation
Indices: 247223--247675 Score: 890
Period size: 226 Copynumber: 2.0 Consensus size: 227
247213 CAACTAAAAA
247223 TTTGATTAAGGTAAATGTACTTATCGATTAATAGTATAATTACGAGTAGCAAAGATATTGTTCCT
1 TTTGATTAAGGTAAATGTACTTATCGATTAATAGTATAATTACGAGTAGCAAAGATATTGTTCCT
247288 ACGAGGGCTAAAAGTATTAGTAATTATTGCCTTTCTATTATTTAACCAACAAATTGGAGTGATTG
66 ACGAGGGCTAAAAGTATTAGTAATTATTGCCTTTCTATTATTTAACCAACAAATTGGAGTGATTG
247353 ATTAAAACTAAAATTAACTAAATTAATTAACATTTTGTAAATATTGAGGGCCAACTTTATTGAAC
131 ATTAAAACTAAAATTAACTAAATTAATTAACATTTTGTAAATATTGAGGGCCAACTTTATTGAAC
247418 TTTTTAGAATTAGAACTAAAA-GACAAATTTT
196 TTTTTAGAATTAGAACTAAAATGACAAATTTT
247449 TTTGATTAAGGTAAATGTACTTATCGATTAATAGTATAATTACGAGTAGCAAAGATATTGTTCCT
1 TTTGATTAAGGTAAATGTACTTATCGATTAATAGTATAATTACGAGTAGCAAAGATATTGTTCCT
*
247514 ACGAGGGCTAAAAGTATTAGTAATTATTGTCTTTCTATTATTTAACCAACAAATTGGAGTGATTG
66 ACGAGGGCTAAAAGTATTAGTAATTATTGCCTTTCTATTATTTAACCAACAAATTGGAGTGATTG
247579 ATTAAAACTAAAATTAACTAAATTAATTAACATTTTGTAAATATTGAGGGCCAACTTTATTGAAC
131 ATTAAAACTAAAATTAACTAAATTAATTAACATTTTGTAAATATTGAGGGCCAACTTTATTGAAC
247644 TTTTTAGAATTAGAACTAAAATGACAAATTTT
196 TTTTTAGAATTAGAACTAAAATGACAAATTTT
247676 GTGAACACTG
Statistics
Matches: 225, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
226 215 0.96
227 10 0.04
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (227 bp):
TTTGATTAAGGTAAATGTACTTATCGATTAATAGTATAATTACGAGTAGCAAAGATATTGTTCCT
ACGAGGGCTAAAAGTATTAGTAATTATTGCCTTTCTATTATTTAACCAACAAATTGGAGTGATTG
ATTAAAACTAAAATTAACTAAATTAATTAACATTTTGTAAATATTGAGGGCCAACTTTATTGAAC
TTTTTAGAATTAGAACTAAAATGACAAATTTT
Found at i:262982 original size:147 final size:148
Alignment explanation
Indices: 262715--263017 Score: 590
Period size: 147 Copynumber: 2.1 Consensus size: 148
262705 CCATTGAAGA
262715 AGTTGGAGTGCTTAACCGGACATTTCGAAGACATCAGTGAATTCAATAAGTTCATCTCCTCAATG
1 AGTTGGAGTGCTTAACCGGACATTTCGAAGACATCAGTGAATTCAATAAGTTCATCTCCTCAATG
262780 CAACAAAGTAAGAAAAATCTCATCAAGTACTCTTTACAGGTGGGCTTATCTTTTATGCTTGCTAC
66 CAACAAAGTAAGAAAAATCTCATCAAGTACTCTTTACAGGTGGGCTTATCTTTTATGCTTGCTAC
262845 AAGAGAT-AAACAGTAAC
131 AAGAGATAAAACAGTAAC
262862 AGTTGGAGTGCTTAACCGGACATTTCGAAGACATCAGTGAATTCAATAAGTTCATCTCCTCAATG
1 AGTTGGAGTGCTTAACCGGACATTTCGAAGACATCAGTGAATTCAATAAGTTCATCTCCTCAATG
262927 CAACAAAGTAAGAAAAATCTCATCAAGTACTCTTTACAGGTGGGCTTATCTTTTATGCTTGCTAC
66 CAACAAAGTAAGAAAAATCTCATCAAGTACTCTTTACAGGTGGGCTTATCTTTTATGCTTGCTAC
262992 AAGAGATAAAACAGTAAC
131 AAGAGATAAAACAGTAAC
*
263010 AATTGGAG
1 AGTTGGAG
263018 GAGTCCAGAA
Statistics
Matches: 154, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
147 137 0.89
148 17 0.11
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (148 bp):
AGTTGGAGTGCTTAACCGGACATTTCGAAGACATCAGTGAATTCAATAAGTTCATCTCCTCAATG
CAACAAAGTAAGAAAAATCTCATCAAGTACTCTTTACAGGTGGGCTTATCTTTTATGCTTGCTAC
AAGAGATAAAACAGTAAC
Found at i:272116 original size:16 final size:16
Alignment explanation
Indices: 272088--272138 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 16
272078 TTATAATTGA
*
272088 TTAATATTAAAATATT
1 TTAATATTAAAATAAT
272104 TTAA-ATTATAAATAAT
1 TTAATATTA-AAATAAT
* *
272120 TTACTA-AAAAATAAT
1 TTAATATTAAAATAAT
272135 TTAA
1 TTAA
272139 ATAAAAGTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 14 0.48
16 14 0.48
17 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAATATTAAAATAAT
Found at i:275698 original size:61 final size:59
Alignment explanation
Indices: 275570--275751 Score: 168
Period size: 61 Copynumber: 3.0 Consensus size: 59
275560 TTATATGTTT
* * ** *
275570 AATTTTTAGAGTTAGAATTAAATTCACAAATTTTGTAAATTTTGAGGGTCAAATTTTTTGA
1 AATTTTTAGAATTAGAA-TAAATTGACAAATTTTGTAAACATTGAGGGT-AAATTTGTTGA
*
275631 AATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTGAGGGATAAATTTGTTGA
1 AATTTTTAGAATTAGAA-TAAATTGACAAATTTTGTAAACATTGAGGG-TAAATTTGTTGA
** * * * * *
275692 TTTTTTTATATTTAGGATCAAATTGATCAAA-TGTGTAAACATTAGAGGGCTAATTTTGTT
1 AATTTTTAGAATTAGAAT-AAATTGA-CAAATTTTGTAAACATT-GAGGG-TAAATTTGTT
275752 ACTAGACCAA
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
60 1 0.01
61 81 0.80
62 19 0.19
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (59 bp):
AATTTTTAGAATTAGAATAAATTGACAAATTTTGTAAACATTGAGGGTAAATTTGTTGA
Found at i:278830 original size:58 final size:58
Alignment explanation
Indices: 278759--278871 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 58
278749 GGACATTAGG
* * *
278759 GCCCTTCTATGAAC-CTTTTGGGCTCTCGATGGAGGTAAGATATATCTTCTACATTTCA
1 GCCCTTCTATGAACTC-CTTGGGCTCTCGACGGAGGTAAGACATATCTTCTACATTTCA
* *
278817 GCCCTT-TAGTGAACTCCTTGGGCTCTCGACGGAGGTGAGGCATATCTTCTACATT
1 GCCCTTCTA-TGAACTCCTTGGGCTCTCGACGGAGGTAAGACATATCTTCTACATT
278872 CGGCCCCTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 2 0.04
58 45 0.94
59 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (58 bp):
GCCCTTCTATGAACTCCTTGGGCTCTCGACGGAGGTAAGACATATCTTCTACATTTCA
Found at i:278887 original size:58 final size:58
Alignment explanation
Indices: 278776--278888 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 58
278766 TATGAACCTT
* * *
278776 TTGGGCTCTCGATGGAGGTAAGATATATCTTCTACATTTCAGCCCTTTAGTGAACTCC
1 TTGGGCTCTCGACGGAGGTAAGACATATCTTCTACATTTCAGCCCTTCAGTGAACTCC
* * * *
278834 TTGGGCTCTCGACGGAGGTGAGGCATATCTTCTACA-TTCGGCCCCTTCCGTGAAC
1 TTGGGCTCTCGACGGAGGTAAGACATATCTTCTACATTTCAG-CCCTTCAGTGAAC
278889 CCTATAATGA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
57 4 0.09
58 43 0.91
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (58 bp):
TTGGGCTCTCGACGGAGGTAAGACATATCTTCTACATTTCAGCCCTTCAGTGAACTCC
Found at i:280653 original size:14 final size:14
Alignment explanation
Indices: 280634--280665 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
280624 TAACGTAAAC
*
280634 TATATTCGGAATTT
1 TATATTCAGAATTT
280648 TATATTCAGAATTT
1 TATATTCAGAATTT
280662 TATA
1 TATA
280666 GTTTTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.50
Consensus pattern (14 bp):
TATATTCAGAATTT
Found at i:284680 original size:68 final size:68
Alignment explanation
Indices: 284582--284710 Score: 213
Period size: 68 Copynumber: 1.9 Consensus size: 68
284572 TTTTAGATTT
*
284582 TAAGACAGGATGATCAGCAGACATAATCTACTATAGATACAAATTAATACGAAAACAGCTATGCT
1 TAAGACAGGATGATCAGCAGACATAATCTACTATAGATAAAAATTAATACGAAAACAGCTATGCT
284647 TTG
66 TTG
* * * *
284650 TAAGACAGTATGTTCAGCAGACATAGTCTACTATAGATAAAAATTAATACGAAAAGAGCTA
1 TAAGACAGGATGATCAGCAGACATAATCTACTATAGATAAAAATTAATACGAAAACAGCTA
284711 CTAAAAAAGC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (68 bp):
TAAGACAGGATGATCAGCAGACATAATCTACTATAGATAAAAATTAATACGAAAACAGCTATGCT
TTG
Found at i:297859 original size:14 final size:14
Alignment explanation
Indices: 297824--297853 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
297814 AAAGAAGAAT
*
297824 AAAATTAAAATTAA
1 AAAATTAAAAATAA
297838 AAAATTAAAAATAA
1 AAAATTAAAAATAA
297852 AA
1 AA
297854 TTTTAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATTAAAAATAA
Found at i:304954 original size:67 final size:66
Alignment explanation
Indices: 304883--305037 Score: 154
Period size: 66 Copynumber: 2.3 Consensus size: 66
304873 CTTTCTACGA
* ** * *
304883 AGGTGAGACATATCTCCAAAAATT-AGCAGTCAAGGCCCTTCATGAACTGTCCAA-CAGCTCTCC
1 AGGTGAGACATATCTCCAAAAATTCA-CAATCAA-GCCCCCCATAAACCGTCCAATCA-CTCTCC
304946 ATAG
63 ATAG
* * * **
304950 AGGTGAGGCATAACACCAAAAATTCACAATCAAGCCCCCCATAAACCGTTTAATCACTCTCCATA
1 AGGTGAGACATATCTCCAAAAATTCACAATCAAGCCCCCCATAAACCGTCCAATCACTCTCCATA
305015 G
66 G
*
305016 AGATGA-AGCATATCTCCAAAAA
1 AGGTGAGA-CATATCTCCAAAAA
305038 ACGACAGTAG
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
66 41 0.58
67 29 0.41
68 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (66 bp):
AGGTGAGACATATCTCCAAAAATTCACAATCAAGCCCCCCATAAACCGTCCAATCACTCTCCATA
G
Found at i:307656 original size:16 final size:16
Alignment explanation
Indices: 307635--307666 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
307625 ATAATCTATA
307635 ATATAGAAAAAAATTC
1 ATATAGAAAAAAATTC
307651 ATATAGAAAAAAATTC
1 ATATAGAAAAAAATTC
307667 GCTAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (16 bp):
ATATAGAAAAAAATTC
Done.