Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold141
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1073719
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.32
Warning! 46264 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:416811 original size:7 final size:7
Alignment explanation
Indices: 416799--416877 Score: 54
Period size: 7 Copynumber: 10.9 Consensus size: 7
416789 TTTTTTAATT
416799 AAATTAA
1 AAATTAA
416806 AAATTAA
1 AAATTAA
416813 AAATTAAAAA
1 AAATT---AA
416823 AAATTAA
1 AAATTAA
*
416830 AAA-GAA
1 AAATTAA
*
416836 ATAAGATAA
1 A-AA-TTAA
*
416845 AAATAAA
1 AAATTAA
*
416852 AAAATAA
1 AAATTAA
*
416859 ATATTAA
1 AAATTAA
416866 AAA-TAA
1 AAATTAA
416872 AAATTA
1 AAATTA
416878 TCATTATGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
6 9 0.16
7 35 0.62
8 2 0.04
9 3 0.05
10 7 0.12
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (7 bp):
AAATTAA
Found at i:417208 original size:29 final size:31
Alignment explanation
Indices: 417171--417236 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 31
417161 TCTTTACAAA
* *
417171 TTAAGAATTTAGTCTATATA-TTTTCAT-TT
1 TTAAAAATTTAATCTATATATTTTTCATATT
* *
417200 TTAAAAATTTAATCTTTTTATTTTTCATATT
1 TTAAAAATTTAATCTATATATTTTTCATATT
417231 TTAAAA
1 TTAAAA
417237 TTTTGGTCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.52
30 7 0.23
31 8 0.26
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (31 bp):
TTAAAAATTTAATCTATATATTTTTCATATT
Found at i:421182 original size:12 final size:12
Alignment explanation
Indices: 421165--421190 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
421155 CATCTCACTT
421165 ACAACATATTTA
1 ACAACATATTTA
421177 ACAACATATTTA
1 ACAACATATTTA
421189 AC
1 AC
421191 TTAATATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (12 bp):
ACAACATATTTA
Found at i:421536 original size:23 final size:22
Alignment explanation
Indices: 421504--421546 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
421494 ACTACCATTT
421504 TCTAATAAAATAATAATAAATA
1 TCTAATAAAATAATAATAAATA
*
421526 TCTAAGTAAAATATTAATAAA
1 TCTAA-TAAAATAATAATAAA
421547 ATAATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (22 bp):
TCTAATAAAATAATAATAAATA
Found at i:421539 original size:13 final size:11
Alignment explanation
Indices: 421506--421549 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
421496 TACCATTTTC
*
421506 TAATAAAATAA
1 TAATAAAATAT
421517 TAAT-AAATAT
1 TAATAAAATAT
421527 CTAAGTAAAATAT
1 -TAA-TAAAATAT
421540 TAATAAAATA
1 TAATAAAATA
421550 ATATTTAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 5 0.17
11 14 0.48
12 4 0.14
13 6 0.21
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:425175 original size:19 final size:19
Alignment explanation
Indices: 425151--425196 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
425141 AATGTTAAAT
425151 AATATTTTTATAAATTTTA
1 AATATTTTTATAAATTTTA
* *
425170 AATATTTTTTTAGATTTTA
1 AATATTTTTATAAATTTTA
*
425189 TATATTTT
1 AATATTTT
425197 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
AATATTTTTATAAATTTTA
Found at i:425253 original size:19 final size:20
Alignment explanation
Indices: 425231--425269 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
425221 TTTTAATATT
425231 TTATTAAAAAAT-TTAAAAA
1 TTATTAAAAAATATTAAAAA
425250 TTATTAAAAAATATTAAAAA
1 TTATTAAAAAATATTAAAAA
425270 ATATGCCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TTATTAAAAAATATTAAAAA
Found at i:425256 original size:10 final size:10
Alignment explanation
Indices: 425232--425273 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
425222 TTTAATATTT
425232 TATTAAAAAA
1 TATTAAAAAA
*
425242 T-TTAAAAAT
1 TATTAAAAAA
425251 TATTAAAAAA
1 TATTAAAAAA
425261 TATTAAAAAA
1 TATTAAAAAA
425271 TAT
1 TAT
425274 GCCTAGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 8 0.28
10 21 0.72
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TATTAAAAAA
Found at i:431231 original size:3 final size:3
Alignment explanation
Indices: 431225--431264 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
431215 TAATAATTGT
431225 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
431265 TATCCTGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:437812 original size:21 final size:19
Alignment explanation
Indices: 437786--437836 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
437776 GATTAAAATG
437786 ATTAAAGTTAGAATTTTATAT
1 ATTAAA-TTAGAATTTTAT-T
* *
437807 ATTAAAAATAAAATTTTATT
1 ATT-AAATTAGAATTTTATT
437827 ATTAAATTAG
1 ATTAAATTAG
437837 TTGAGATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 5 0.20
20 4 0.16
21 13 0.52
22 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (19 bp):
ATTAAATTAGAATTTTATT
Found at i:438056 original size:204 final size:205
Alignment explanation
Indices: 437832--438241 Score: 813
Period size: 204 Copynumber: 2.0 Consensus size: 205
437822 TTATTATTAA
437832 ATTAGTTGAGATATTTTGATGAAGAAATGAAGAAACTTCTTTATCTTTTATATAAGCGGTTCACG
1 ATTAGTTGAGATATTTTGATGAAGAAATGAAGAAACTTCTTTATCTTTTATATAAGCGGTTCACG
437897 CCACTTTCAAGAAAAAAAAAAAGGGGAGAGAAACTTTAATTTTTATACAATTTGGTCCTTTGTCA
66 CCACTTTCAAGAAAAAAAAAAAGGGGAGAGAAACTTTAATTTTTATACAATTTGGTCCTTTGTCA
437962 TAAAATTTCACTATTTCACCTCAAAACCTTGAAAATTTTCATAGCCATCAAAGAGATAAGATGAA
131 TAAAATTTCACTATTTCACCTCAAAACCTTGAAAATTTTCATAGCCATCAAAGAGATAAGATGAA
438027 GTACAGGTCT
196 GTACAGGTCT
438037 ATTAGTTGAG-TATTTTGATGAAGAAATGAAGAAACTTCTTTATCTTTTATATAAGCGGTTCACG
1 ATTAGTTGAGATATTTTGATGAAGAAATGAAGAAACTTCTTTATCTTTTATATAAGCGGTTCACG
438101 CCACTTTCAAGAAAAAAAAAAAGGGGAGAGAAACTTTAATTTTTATACAATTTGGTCCTTTGTCA
66 CCACTTTCAAGAAAAAAAAAAAGGGGAGAGAAACTTTAATTTTTATACAATTTGGTCCTTTGTCA
438166 TAAAATTTCACTATTTCACCTCAAAACCTTGAAAATTTTCATAGCCATCAAAGAGATAAGATGAA
131 TAAAATTTCACTATTTCACCTCAAAACCTTGAAAATTTTCATAGCCATCAAAGAGATAAGATGAA
438231 GTACAGGTCT
196 GTACAGGTCT
438241 A
1 A
438242 GAAGAGTTTG
Statistics
Matches: 205, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
204 195 0.95
205 10 0.05
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (205 bp):
ATTAGTTGAGATATTTTGATGAAGAAATGAAGAAACTTCTTTATCTTTTATATAAGCGGTTCACG
CCACTTTCAAGAAAAAAAAAAAGGGGAGAGAAACTTTAATTTTTATACAATTTGGTCCTTTGTCA
TAAAATTTCACTATTTCACCTCAAAACCTTGAAAATTTTCATAGCCATCAAAGAGATAAGATGAA
GTACAGGTCT
Found at i:439889 original size:24 final size:24
Alignment explanation
Indices: 439854--439908 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
439844 GTTTTGAAAA
439854 AGAAAA-ATGGTGTTTGGTAAGAG
1 AGAAAATATGGTGTTTGGTAAGAG
439877 AGAAAATATGGTGTTTGGTAAGAG
1 AGAAAATATGGTGTTTGGTAAGAG
439901 AGAAAATA
1 AGAAAATA
439909 AGAGAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 6 0.19
24 25 0.81
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (24 bp):
AGAAAATATGGTGTTTGGTAAGAG
Found at i:442061 original size:36 final size:36
Alignment explanation
Indices: 442018--442139 Score: 115
Period size: 36 Copynumber: 3.3 Consensus size: 36
442008 TTTTTATCAT
442018 ATATATATATATCTCACACATATGATTTTTGAAGAG
1 ATATATATATATCTCACACATATGATTTTTGAAGAG
* * * * ** *
442054 ATATATATATATAAAAAT-AAACCT-TAAATTTTT-ATCAT
1 ATATATATATAT----CTCACACATAT-GATTTTTGAAGAG
442092 ATATATATATATCTCACACATATGATTTTTGAAGAG
1 ATATATATATATCTCACACATATGATTTTTGAAGAG
442128 ATATATATATAT
1 ATATATATATAT
442140 ATATATATAT
Statistics
Matches: 64, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
34 1 0.02
35 10 0.16
36 27 0.42
38 15 0.23
39 10 0.16
40 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (36 bp):
ATATATATATATCTCACACATATGATTTTTGAAGAG
Found at i:442061 original size:38 final size:38
Alignment explanation
Indices: 442016--442141 Score: 127
Period size: 38 Copynumber: 3.4 Consensus size: 38
442006 AATTTTTATC
442016 ATATATATATATATCTCACACATATGATTTTTGAAGAG
1 ATATATATATATATCTCACACATATGATTTTTGAAGAG
** * * * **
442054 ATATATATATATAAAAAT-AAACCT-TAAATTTTT--A-TC
1 ATATATATATAT--ATCTCACACATAT-GATTTTTGAAGAG
442090 ATATATATATATATCTCACACATATGATTTTTGAAGAG
1 ATATATATATATATCTCACACATATGATTTTTGAAGAG
442128 ATATATATATATAT
1 ATATATATATATAT
442142 ATATATATAA
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
34 2 0.03
35 10 0.15
36 13 0.20
37 2 0.03
38 27 0.41
39 10 0.15
40 2 0.03
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (38 bp):
ATATATATATATATCTCACACATATGATTTTTGAAGAG
Found at i:442089 original size:74 final size:75
Alignment explanation
Indices: 441987--442140 Score: 301
Period size: 74 Copynumber: 2.1 Consensus size: 75
441977 AGTTTTTTAA
441987 ATATAAAAACTAAACCTTAAATTTTTATCATATATATATATATCTCACACATATGATTTTTGAAG
1 ATATAAAAACTAAACCTTAAATTTTTATCATATATATATATATCTCACACATATGATTTTTGAAG
442052 AGATATATAT
66 AGATATATAT
442062 ATATAAAAA-TAAACCTTAAATTTTTATCATATATATATATATCTCACACATATGATTTTTGAAG
1 ATATAAAAACTAAACCTTAAATTTTTATCATATATATATATATCTCACACATATGATTTTTGAAG
442126 AGATATATAT
66 AGATATATAT
442136 ATATA
1 ATATA
442141 TATATATATA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 70 0.89
75 9 0.11
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (75 bp):
ATATAAAAACTAAACCTTAAATTTTTATCATATATATATATATCTCACACATATGATTTTTGAAG
AGATATATAT
Found at i:443868 original size:26 final size:27
Alignment explanation
Indices: 443815--443868 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
443805 ATTAAAATTT
* *
443815 AAAAAGTAGAAGGACTAAATTTCTAAA
1 AAAAAGTAGAAGGAATAAATTTCCAAA
* *
443842 AAAAAGTATAGGGAATAAA-TTCCAAA
1 AAAAAGTAGAAGGAATAAATTTCCAAA
443868 A
1 A
443869 CTACAAAGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.20
Consensus pattern (27 bp):
AAAAAGTAGAAGGAATAAATTTCCAAA
Found at i:456450 original size:6 final size:6
Alignment explanation
Indices: 456441--456478 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
456431 TGCACCACCT
*
456441 CCTCTG CCTCTC CCTCTC CCTCTC CCTCT- CCTCTC CCT
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCT
456479 TCTCTCCTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.00, C:0.63, G:0.03, T:0.34
Consensus pattern (6 bp):
CCTCTC
Found at i:460407 original size:32 final size:33
Alignment explanation
Indices: 460362--460427 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
460352 TAATTTTATC
* * *
460362 AAGTTCGGATTAAATTTGAAATTAAATTAAATT
1 AAGTTCGGATTAAATTTAAAATCAAATCAAATT
460395 AAGTTC-GATTAAATTTAAAATCAAATCAAATT
1 AAGTTCGGATTAAATTTAAAATCAAATCAAATT
460427 A
1 A
460428 GACTTCTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 24 0.80
33 6 0.20
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (33 bp):
AAGTTCGGATTAAATTTAAAATCAAATCAAATT
Found at i:467227 original size:41 final size:41
Alignment explanation
Indices: 467161--467305 Score: 195
Period size: 40 Copynumber: 3.5 Consensus size: 41
467151 ATTATTTTTT
* *
467161 ATTTTTTTAATTTTCAAATAATTTTAAAATACTTTTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
* *
467202 ATTTTTTAAATTTTAAAATTTTTTTAAAATAC-TTTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
*
467242 CTTTTTTTAATTTTAAAATATTTTTAAAATA-TTTTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
467282 ATTTTAATTTTAATTTTTAAAATA
1 A-TTT--TTTTAA-TTTTAAAATA
467306 AATTTTTGGT
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
40 44 0.48
41 31 0.34
43 6 0.07
44 10 0.11
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (41 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
Found at i:467240 original size:13 final size:11
Alignment explanation
Indices: 467212--467286 Score: 54
Period size: 11 Copynumber: 7.1 Consensus size: 11
467202 ATTTTTTAAA
467212 TTTTAAAATTT
1 TTTTAAAATTT
467223 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
467236 TTTT-AACTTT
1 TTTTAAAATTT
467246 TTTT--AA---
1 TTTTAAAATTT
*
467252 TTTTAAAATAT
1 TTTTAAAATTT
467263 TTTTAAAATATT
1 TTTTAAAAT-TT
*
467275 TTTTTAAATTT
1 TTTTAAAATTT
467286 T
1 T
467287 AATTTTAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
6 4 0.08
8 2 0.04
9 1 0.02
10 6 0.12
11 21 0.40
12 12 0.23
13 6 0.12
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:478657 original size:21 final size:21
Alignment explanation
Indices: 478633--478674 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
478623 TGTAATTGAA
478633 TTAAATATAAATTACAAATAT
1 TTAAATATAAATTACAAATAT
* * *
478654 TTAATTATTAATTGCAAATAT
1 TTAAATATAAATTACAAATAT
478675 AAGATTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (21 bp):
TTAAATATAAATTACAAATAT
Found at i:482257 original size:34 final size:34
Alignment explanation
Indices: 482209--482276 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
482199 CACCACCCCT
482209 CCCCAAAAAAAAAAAAAAAAATTGGTAGGGTGAC
1 CCCCAAAAAAAAAAAAAAAAATTGGTAGGGTGAC
* *
482243 CCCCCAAAAAAAAAAAAAAAATTGGTAGTGTGAC
1 CCCCAAAAAAAAAAAAAAAAATTGGTAGGGTGAC
482277 TAGTGCTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.54, C:0.16, G:0.16, T:0.13
Consensus pattern (34 bp):
CCCCAAAAAAAAAAAAAAAAATTGGTAGGGTGAC
Found at i:482732 original size:22 final size:22
Alignment explanation
Indices: 482689--482732 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
482679 CTAGTTTCAT
* *
482689 TTAAAAGAAGGAAATGAGAAAA
1 TTAAAAGAAGGAAAGGAAAAAA
482711 TTAAAAGAAGGAAAGGAAAAAA
1 TTAAAAGAAGGAAAGGAAAAAA
482733 AATAGGGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.23, T:0.11
Consensus pattern (22 bp):
TTAAAAGAAGGAAAGGAAAAAA
Found at i:490669 original size:2 final size:2
Alignment explanation
Indices: 490664--490691 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
490654 GACACACACA
490664 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
490692 TATGTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:491575 original size:18 final size:18
Alignment explanation
Indices: 491552--491586 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
491542 TTGAAAAGTC
491552 AAATAAA-AAAATTAAAAT
1 AAATAAATAAAA-TAAAAT
491570 AAATAAATAAAATAAAA
1 AAATAAATAAAATAAAA
491587 CAATAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAATAAATAAAATAAAAT
Found at i:491580 original size:13 final size:14
Alignment explanation
Indices: 491552--491586 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
491542 TTGAAAAGTC
491552 AAATAAAAAAATTA
1 AAATAAAAAAATTA
*
491566 AAATAAATAAA-TA
1 AAATAAAAAAATTA
491579 AAATAAAA
1 AAATAAAA
491587 CAATAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAAAATTA
Found at i:493603 original size:18 final size:18
Alignment explanation
Indices: 493580--493614 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
493570 TTGAAAAGTC
493580 AAATAAA-AAAATTAAAAT
1 AAATAAATAAAA-TAAAAT
493598 AAATAAATAAAATAAAA
1 AAATAAATAAAATAAAA
493615 CAATAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAATAAATAAAATAAAAT
Found at i:493608 original size:13 final size:14
Alignment explanation
Indices: 493580--493614 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
493570 TTGAAAAGTC
493580 AAATAAAAAAATTA
1 AAATAAAAAAATTA
*
493594 AAATAAATAAA-TA
1 AAATAAAAAAATTA
493607 AAATAAAA
1 AAATAAAA
493615 CAATAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAAAATTA
Found at i:493990 original size:55 final size:56
Alignment explanation
Indices: 493909--494020 Score: 217
Period size: 55 Copynumber: 2.0 Consensus size: 56
493899 ACTAAATAAA
493909 TCTAAATAAAATTTTTAAATATACTAGAACTCTAATTTAATCTAAATAAGAAGTAG
1 TCTAAATAAAATTTTTAAATATACTAGAACTCTAATTTAATCTAAATAAGAAGTAG
493965 TCTAAATAAAA-TTTTAAATATACTAGAACTCTAATTTAATCTAAATAAGAAGTAG
1 TCTAAATAAAATTTTTAAATATACTAGAACTCTAATTTAATCTAAATAAGAAGTAG
494020 T
1 T
494021 TTTAAACTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 45 0.80
56 11 0.20
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (56 bp):
TCTAAATAAAATTTTTAAATATACTAGAACTCTAATTTAATCTAAATAAGAAGTAG
Found at i:495308 original size:18 final size:18
Alignment explanation
Indices: 495285--495319 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
495275 TTGAAAAGTC
495285 AAATAAA-AAAATTAAAAT
1 AAATAAATAAAA-TAAAAT
495303 AAATAAATAAAATAAAA
1 AAATAAATAAAATAAAA
495320 CAATAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAATAAATAAAATAAAAT
Found at i:495313 original size:13 final size:14
Alignment explanation
Indices: 495285--495319 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
495275 TTGAAAAGTC
495285 AAATAAAAAAATTA
1 AAATAAAAAAATTA
*
495299 AAATAAATAAA-TA
1 AAATAAAAAAATTA
495312 AAATAAAA
1 AAATAAAA
495320 CAATAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAAAATTA
Found at i:507034 original size:27 final size:28
Alignment explanation
Indices: 506984--507039 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
506974 AAAAATTACA
*
506984 AAAATATTCAAAATAAATTTTAAAATTT
1 AAAATATTCAAAATAAATTCTAAAATTT
* *
507012 AAAATATTTATAA-AAATTCTAAAATTT
1 AAAATATTCAAAATAAATTCTAAAATTT
507039 A
1 A
507040 TATTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (28 bp):
AAAATATTCAAAATAAATTCTAAAATTT
Found at i:519555 original size:28 final size:28
Alignment explanation
Indices: 519523--519593 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 28
519513 ATAAAAAATA
* *
519523 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAATTTTATTTATTT
519551 ACCAAAATATTATAAATTTTATTTATTT
1 ACCAAAATATTATAAATTTTATTTATTT
519579 ACCAAAATA-TATAAA
1 ACCAAAATATTATAAA
519594 AAAACAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 6 0.15
28 35 0.85
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (28 bp):
ACCAAAATATTATAAATTTTATTTATTT
Found at i:519674 original size:22 final size:22
Alignment explanation
Indices: 519646--519687 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
519636 GGCTAATCAC
519646 ATTGGCGGCACCAAAGGTGCTG
1 ATTGGCGGCACCAAAGGTGCTG
*
519668 ATTGGCGGCACCAATGGTGC
1 ATTGGCGGCACCAAAGGTGC
519688 CAAAGGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.19
Consensus pattern (22 bp):
ATTGGCGGCACCAAAGGTGCTG
Found at i:520785 original size:9 final size:9
Alignment explanation
Indices: 520771--520845 Score: 107
Period size: 9 Copynumber: 8.2 Consensus size: 9
520761 TTTGGTTAAA
520771 AATTACCCG
1 AATTACCCG
520780 AATTACCCG
1 AATTACCCG
520789 AATTACCC-
1 AATTACCCG
*
520797 AATTAACCG
1 AATTACCCG
*
520806 AATTAACCG
1 AATTACCCG
520815 AATTACCCG
1 AATTACCCG
520824 AAAATTACCCG
1 --AATTACCCG
520835 AATTACCCG
1 AATTACCCG
520844 AA
1 AA
520846 AATTACCCAA
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
8 7 0.11
9 45 0.74
11 9 0.15
ACGTcount: A:0.40, C:0.29, G:0.09, T:0.21
Consensus pattern (9 bp):
AATTACCCG
Found at i:520835 original size:20 final size:20
Alignment explanation
Indices: 520769--520853 Score: 117
Period size: 20 Copynumber: 4.5 Consensus size: 20
520759 TTTTTGGTTA
520769 AAAATTACCCGAATTACCCG
1 AAAATTACCCGAATTACCCG
*
520789 --AATTACCC-AATTAACCG
1 AAAATTACCCGAATTACCCG
*
520806 --AATTAACCGAATTACCCG
1 AAAATTACCCGAATTACCCG
520824 AAAATTACCCGAATTACCCG
1 AAAATTACCCGAATTACCCG
520844 AAAATTACCC
1 AAAATTACCC
520854 AAAAAGTTCG
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
17 15 0.26
18 16 0.28
20 27 0.47
ACGTcount: A:0.41, C:0.29, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAATTACCCGAATTACCCG
Found at i:520858 original size:11 final size:11
Alignment explanation
Indices: 520815--520857 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
520805 GAATTAACCG
520815 AATTACCCGAA
1 AATTACCCGAA
520826 AATTACCCG--
1 AATTACCCGAA
520835 AATTACCCGAA
1 AATTACCCGAA
520846 AATTACCC-AA
1 AATTACCCGAA
520856 AA
1 AA
520858 AGTTCGGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.30
10 4 0.13
11 17 0.57
ACGTcount: A:0.47, C:0.28, G:0.07, T:0.19
Consensus pattern (11 bp):
AATTACCCGAA
Found at i:521311 original size:28 final size:28
Alignment explanation
Indices: 521278--521340 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
521268 TTTTTTGGGC
**
521278 ATATTTTGGTAAATAAAAAAATTTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
521306 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
521334 ATATTTT
1 ATATTTT
521341 AGTTATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:526905 original size:14 final size:14
Alignment explanation
Indices: 526886--526925 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
526876 TTGATTGCCA
526886 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
526900 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
526914 GGAAAATGTTTT
1 GTAAAATGTTTT
526926 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:526934 original size:20 final size:20
Alignment explanation
Indices: 526909--526948 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
526899 CGTAAAATGA
*
526909 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
526929 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
526949 AGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:526938 original size:34 final size:35
Alignment explanation
Indices: 526894--526960 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
526884 CAGTAAAATG
* *
526894 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
*
526928 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTT
526961 CTACTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:527030 original size:20 final size:20
Alignment explanation
Indices: 527005--527056 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 20
526995 GAAAAAGTTG
527005 TTTTTACATATATT-AATAAA
1 TTTTTACATATATTAAAT-AA
* *
527025 TTTTT--ATATTTTAAATTA
1 TTTTTACATATATTAAATAA
527043 TTTTTACATATATT
1 TTTTTACATATATT
527057 GCAATGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 12 0.46
19 3 0.12
20 11 0.42
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTACATATATTAAATAA
Found at i:529968 original size:21 final size:20
Alignment explanation
Indices: 529931--529969 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
529921 TTTCAAGTAA
529931 TAAAAAATAAAAGTAAAAAG
1 TAAAAAATAAAAGTAAAAAG
529951 TAAAAATATATAAA-TAAAA
1 TAAAAA-ATA-AAAGTAAAA
529970 CACTTTGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 8 0.47
22 3 0.18
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (20 bp):
TAAAAAATAAAAGTAAAAAG
Found at i:538059 original size:28 final size:28
Alignment explanation
Indices: 538022--538077 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
538012 CACATAATCT
*
538022 TCATTTTACTTCTTTTAACCCATCATCA
1 TCATTTTACTTCTCTTAACCCATCATCA
538050 TCATTTTACTTCTCTTAACCCATCATCA
1 TCATTTTACTTCTCTTAACCCATCATCA
538078 GAAACAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.30, G:0.00, T:0.45
Consensus pattern (28 bp):
TCATTTTACTTCTCTTAACCCATCATCA
Found at i:539255 original size:30 final size:30
Alignment explanation
Indices: 539219--539283 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
539209 TAGCAAAAAA
539219 CTCTCAAATTTCT-CTCTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCT-TAAATTTCTCAAAG
539249 CTCTCAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCTTAAATTTCTCAAAG
539279 CTCTC
1 CTCTC
539284 TTTAATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.28, C:0.29, G:0.03, T:0.40
Consensus pattern (30 bp):
CTCTCAAATTTCTCCTTAAATTTCTCAAAG
Found at i:545607 original size:33 final size:32
Alignment explanation
Indices: 545532--545610 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 32
545522 GAAGTGTTTA
*
545532 AATGTAAGACCATAACTAGGCTATGGAATTTT
1 AATGTAAGACCATAACTAGGCTATGGAATTTG
* *
545564 AATGAAAAGACCATAACTAGGTTAT-GACACTTTG
1 AATG-TAAGACCATAACTAGGCTATGGA-A-TTTG
545598 AATGTAAGACCAT
1 AATGTAAGACCAT
545611 GGTTGGACCA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 6 0.15
33 27 0.68
34 7 0.17
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (32 bp):
AATGTAAGACCATAACTAGGCTATGGAATTTG
Found at i:545680 original size:101 final size:101
Alignment explanation
Indices: 545501--545712 Score: 264
Period size: 101 Copynumber: 2.1 Consensus size: 101
545491 AATTGATGGA
* * *
545501 TAAGACCATGGTTAGACCATGGAAGTGTTTAAATGTAAGACCATAACTAGGCTATGGAATTTTAA
1 TAAGACCATGGTTAGACCATGGAAGTATATAAATGTAAGACCATAACTAGGCTATGGAATTCTAA
***
545566 TGAAAAGACCATAACTAGGTTATGACACTTTGAATG
66 TGAAAAGACCATAACTAGGTTATGACACTACAAATG
* * * * * *
545602 TAAGACCATGGTTGGACCAT-GACAGTATATATATGTAAGACCATAGCTGGGCTATGGCATTCTG
1 TAAGACCATGGTTAGACCATGGA-AGTATATAAATGTAAGACCATAACTAGGCTATGGAATTCTA
* * * *
545666 ATGATAATATCATAACTGGGTTATGACACTACAAATG
65 ATGAAAAGACCATAACTAGGTTATGACACTACAAATG
545703 TAAGACCATG
1 TAAGACCATG
545713 CCAGGGCCAT
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
100 2 0.02
101 92 0.98
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTAGACCATGGAAGTATATAAATGTAAGACCATAACTAGGCTATGGAATTCTAA
TGAAAAGACCATAACTAGGTTATGACACTACAAATG
Found at i:547570 original size:34 final size:32
Alignment explanation
Indices: 547516--547594 Score: 95
Period size: 34 Copynumber: 2.4 Consensus size: 32
547506 AAACACAAAC
* * * *
547516 TTATTTTTAAAAAACTCTAAACCCTAATTTAA
1 TTATTTTTTAAAACCCCTAAAACCTAATTTAA
*
547548 TTAATTTATTTAAAACCCCTAAAATCTAATTTAA
1 TT-ATTT-TTTAAAACCCCTAAAACCTAATTTAA
547582 TTATTTTTTAAAA
1 TTATTTTTTAAAA
547595 AACACATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 9 0.22
33 8 0.20
34 23 0.57
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.44
Consensus pattern (32 bp):
TTATTTTTTAAAACCCCTAAAACCTAATTTAA
Found at i:561838 original size:46 final size:46
Alignment explanation
Indices: 561771--561955 Score: 298
Period size: 46 Copynumber: 4.0 Consensus size: 46
561761 ACATTGCTAT
*
561771 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCAC
561817 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCAC
* * * *
561863 AACTCAATATAGTTTTCTTCACTGAAACACCATACCTACTTTTCAT
1 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCAC
* * *
561909 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCAC
561955 A
1 A
561956 CTTTTCCATG
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCAC
Found at i:564577 original size:445 final size:446
Alignment explanation
Indices: 563737--564627 Score: 1766
Period size: 445 Copynumber: 2.0 Consensus size: 446
563727 AACACTAAGA
*
563737 TAGGTGCAACTTAACAAGTAAATGCCTCTAAAATAGTACCAAAATTAACATTAAAATAAGAGTTA
1 TAGGTGCAACTTAACAAGTAAATGCCTCTAAAATAGTACCAAAATTAACAATAAAATAAGAGTTA
563802 TACAATATCTAACCAATAACAACAAAATAGCAACAACATAATAGTGAAATGAAAGCAAAATACTG
66 TACAATATCTAACCAATAACAACAAAATAGCAACAACATAATAGTGAAATGAAAGCAAAATACTG
563867 AGAAAATAGCAAGAAACAACAGTAAAATAATGGGAAAACAATAAGAAAACAACAAATTTTTTTCT
131 AGAAAATAGCAAGAAACAACAGTAAAATAATGGGAAAACAATAAGAAAACAACAAATTTTTTTCT
563932 TTTTGCAAATTCGAGTGGGGCTAGACTGGGCAAAAAAAGCCTTACATGAGGCCCAACCTGTTTTT
196 TTTTGCAAATTCGAGTGGGGCTAGACTGGGCAAAAAAAGCCTTACATGAGGCCCAACCTGTTTTT
563997 TAAATGAGCCTTGTTTTTTTTTTTTCCAAACCCATTTTTTAGGTTTATACATTTAGCTTCTTTAT
261 TAAATGAGCCTTGTTTTTTTTTTTTCCAAACCCATTTTTTAGGTTTATACATTTAGCTTCTTTAT
564062 TTATCACTATTATTTATATTAAATGTGTGAAATAAAATGTTTTAATAAAGAATAAAAAACAGAAA
326 TTATCACTATTATTTATATTAAATGTGTGAAATAAAATGTTTTAATAAAGAATAAAAAACAGAAA
564127 GAACTAATTATTAAAAAGGAAAATAGTTTTTATAAACATATAAAGTCCCGAGTGGT
391 GAACTAATTATTAAAAAGGAAAATAGTTTTTATAAACATATAAAGTCCCGAGTGGT
564183 TAGGTGCAAC-TAACAAGTAAATGCCTCTAAAATAGTACCAAAATTAACAATAAAATAAGAGTTA
1 TAGGTGCAACTTAACAAGTAAATGCCTCTAAAATAGTACCAAAATTAACAATAAAATAAGAGTTA
564247 TACAATATCTAACCAATAACAACAAAATAGCAACAACATAATAGTGAAATGAAAGCAAAATACTG
66 TACAATATCTAACCAATAACAACAAAATAGCAACAACATAATAGTGAAATGAAAGCAAAATACTG
564312 AGAAAATAGCAAGAAACAACAGTAAAATAATGGGAAAACAATAAGAAAACAACAAATTTTTTTCT
131 AGAAAATAGCAAGAAACAACAGTAAAATAATGGGAAAACAATAAGAAAACAACAAATTTTTTTCT
564377 TTTTGCAAATTCGAGTGGGGCTAGACTGGGCAAAAAAAGCCTTACATGAGGCCCAACCTGTTTTT
196 TTTTGCAAATTCGAGTGGGGCTAGACTGGGCAAAAAAAGCCTTACATGAGGCCCAACCTGTTTTT
564442 TAAATGAGCCTTGTTTTTTTTTTTTCCAAACCCATTTTTTAGGTTTATACATTTAGCTTCTTTAT
261 TAAATGAGCCTTGTTTTTTTTTTTTCCAAACCCATTTTTTAGGTTTATACATTTAGCTTCTTTAT
564507 TTATCACTATTATTTATATTAAATGTGTGAAATAAAATGTTTTAATAAAGAATAAAAAACAGAAA
326 TTATCACTATTATTTATATTAAATGTGTGAAATAAAATGTTTTAATAAAGAATAAAAAACAGAAA
564572 GAACTAATTATTAAAAAGGAAAATAGTTTTTATAAACATATAAAGTCCCGAGTGGT
391 GAACTAATTATTAAAAAGGAAAATAGTTTTTATAAACATATAAAGTCCCGAGTGGT
564628 GGGCTGGGCA
Statistics
Matches: 444, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
445 434 0.98
446 10 0.02
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (446 bp):
TAGGTGCAACTTAACAAGTAAATGCCTCTAAAATAGTACCAAAATTAACAATAAAATAAGAGTTA
TACAATATCTAACCAATAACAACAAAATAGCAACAACATAATAGTGAAATGAAAGCAAAATACTG
AGAAAATAGCAAGAAACAACAGTAAAATAATGGGAAAACAATAAGAAAACAACAAATTTTTTTCT
TTTTGCAAATTCGAGTGGGGCTAGACTGGGCAAAAAAAGCCTTACATGAGGCCCAACCTGTTTTT
TAAATGAGCCTTGTTTTTTTTTTTTCCAAACCCATTTTTTAGGTTTATACATTTAGCTTCTTTAT
TTATCACTATTATTTATATTAAATGTGTGAAATAAAATGTTTTAATAAAGAATAAAAAACAGAAA
GAACTAATTATTAAAAAGGAAAATAGTTTTTATAAACATATAAAGTCCCGAGTGGT
Found at i:574480 original size:18 final size:19
Alignment explanation
Indices: 574444--574486 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
574434 ACGGTTAAAA
574444 TATATATTTTTTATGAATTT
1 TATA-ATTTTTTATGAATTT
*
574464 TATAATTTTTTCT-AATTT
1 TATAATTTTTTATGAATTT
574482 T-TAAT
1 TATAAT
574487 AAATTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 6 0.27
19 8 0.36
20 4 0.18
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TATAATTTTTTATGAATTT
Found at i:583565 original size:27 final size:28
Alignment explanation
Indices: 583506--583570 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
583496 AATTTAAGAC
583506 GAGATTTGGGGATTTTTTTTATTATTTA
1 GAGATTTGGGGATTTTTTTTATTATTTA
* *
583534 AAGATTTGGGG-TTTTTTTTTTTAATTT-
1 GAGATTTGGGGATTTTTTTTATT-ATTTA
583561 GAGATTTGGG
1 GAGATTTGGG
583571 AATGTGAGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.58
28 14 0.42
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (28 bp):
GAGATTTGGGGATTTTTTTTATTATTTA
Found at i:588330 original size:30 final size:28
Alignment explanation
Indices: 588295--588373 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 28
588285 TGATTCATCC
588295 ATGGAAAATAAAATAAAAAAAATGATGAA
1 ATGGAAAATAAAATAAAAAAAATGAT-AA
* * *
588324 ATTGGAAAGTGAAATAATAAAAGATGATAA
1 A-TGGAAAATAAAATAA-AAAAAATGATAA
588354 AT-GATAAATAAAAATAAAAA
1 ATGGA-AAAT-AAAATAAAAA
588374 TATCATCATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
28 2 0.05
29 8 0.20
30 22 0.54
31 9 0.22
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.20
Consensus pattern (28 bp):
ATGGAAAATAAAATAAAAAAAATGATAA
Found at i:589437 original size:25 final size:25
Alignment explanation
Indices: 589405--589463 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
589395 GAGCGTCTTG
*
589405 ATATGGCTCGCTTGAACTTCCCAAT
1 ATATGGCTAGCTTGAACTTCCCAAT
*
589430 ATATGGCTAGCTTGAACTTCCCGAT
1 ATATGGCTAGCTTGAACTTCCCAAT
589455 ATATGGCTA
1 ATATGGCTA
589464 TCCGAAGCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (25 bp):
ATATGGCTAGCTTGAACTTCCCAAT
Found at i:590208 original size:15 final size:15
Alignment explanation
Indices: 590188--590226 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
590178 GGAAAACAAA
590188 AGAGAAAGAAGAAAC
1 AGAGAAAGAAGAAAC
* *
590203 AGAGAAAGACGAAAG
1 AGAGAAAGAAGAAAC
590218 AGA-AAAGAA
1 AGAGAAAGAA
590227 AAAGGGCGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.67, C:0.05, G:0.28, T:0.00
Consensus pattern (15 bp):
AGAGAAAGAAGAAAC
Found at i:594215 original size:22 final size:22
Alignment explanation
Indices: 594189--594263 Score: 89
Period size: 22 Copynumber: 3.3 Consensus size: 22
594179 CAAATTATGC
594189 TCAAAATGGACAGCATTATACA
1 TCAAAATGGACAGCATTATACA
* *
594211 TCAAATTGGACAGCATCAATATGC-
1 TCAAAATGGACAGCAT---TATACA
594235 TCAAAATGGACAGCATTATACA
1 TCAAAATGGACAGCATTATACA
594257 TCTAAAA
1 TC-AAAA
594264 ACAACCACAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
21 4 0.09
22 17 0.39
23 4 0.09
24 15 0.34
25 4 0.09
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (22 bp):
TCAAAATGGACAGCATTATACA
Found at i:594244 original size:24 final size:21
Alignment explanation
Indices: 594182--594253 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 21
594172 TATACATCAA
594182 ATTATGCTCAAAATGGACAGC
1 ATTATGCTCAAAATGGACAGC
* *
594203 ATTATACATCAAATTGGACAGC
1 ATTATGC-TCAAAATGGACAGC
594225 ATCAATATGCTCAAAATGGACAGC
1 AT---TATGCTCAAAATGGACAGC
594249 ATTAT
1 ATTAT
594254 ACATCTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
21 9 0.21
22 15 0.35
24 15 0.35
25 4 0.09
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (21 bp):
ATTATGCTCAAAATGGACAGC
Found at i:594264 original size:24 final size:23
Alignment explanation
Indices: 594191--594263 Score: 87
Period size: 24 Copynumber: 3.2 Consensus size: 23
594181 AATTATGCTC
594191 AAAATGGACAGCATTATACATC-
1 AAAATGGACAGCATTATACATCT
* * *
594213 AAATTGGACAGCATCA-ATATGCT
1 AAAATGGACAGCATTATACAT-CT
594236 CAAAATGGACAGCATTATACATCT
1 -AAAATGGACAGCATTATACATCT
594260 AAAA
1 AAAA
594264 ACAACCACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.07
22 15 0.37
23 4 0.10
24 16 0.39
25 3 0.07
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (23 bp):
AAAATGGACAGCATTATACATCT
Found at i:594966 original size:42 final size:41
Alignment explanation
Indices: 594919--595077 Score: 139
Period size: 41 Copynumber: 3.9 Consensus size: 41
594909 AATGTTTTGT
* *
594919 ACACTAATTGCCAT-CGTATAGCCGAAGCTAT-TATAATCTCGC
1 ACACTAAGTGCCATAC--ATAGCCGAAGCTATCT-CAATCTCGC
* *
594961 ACACTAAGTGCCTTACATAGCCGAAGCTATCTCAGTCTCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCAATCTCGC
* * * *
595002 ACACTAAGTGCATATATATAACCGAAGCTAT-TCCAA-ATCGC
1 ACACTAAGTGC-CATACATAGCCGAAGCTATCT-CAATCTCGC
* *
595043 ACACTAACTGTCATA-ATTAGCCGAAGCTATCTCAA
1 ACACTAAGTGCCATACA-TAGCCGAAGCTATCTCAA
595078 ATTTCATACT
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
39 1 0.01
40 18 0.19
41 47 0.48
42 30 0.31
43 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (41 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATCTCAATCTCGC
Found at i:595249 original size:94 final size:94
Alignment explanation
Indices: 595088--595278 Score: 337
Period size: 94 Copynumber: 2.0 Consensus size: 94
595078 ATTTCATACT
**
595088 AAGTGCTAAACATAGCCGATTTATCGTTAAACATGATTGTATTCTCGTGTATACAATTTATGCAA
1 AAGTGCTAAACATAGCCGATTTATCGTTAAACATGACCGTATTCTCGTGTATACAATTTATGCAA
595153 TAACAAAGCATTAAAAGCATAATTGTAAC
66 TAACAAAGCATTAAAAGCATAATTGTAAC
**
595182 AAGTGCTAAACATAGTTGATTTATCGTTAAACATGACCGTATTCTCGTGTATACAATTTATGCAA
1 AAGTGCTAAACATAGCCGATTTATCGTTAAACATGACCGTATTCTCGTGTATACAATTTATGCAA
*
595247 TAACAAAGCATTAAAATCATAATTGTAAC
66 TAACAAAGCATTAAAAGCATAATTGTAAC
595276 AAG
1 AAG
595279 GTTTATTGCG
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.32
Consensus pattern (94 bp):
AAGTGCTAAACATAGCCGATTTATCGTTAAACATGACCGTATTCTCGTGTATACAATTTATGCAA
TAACAAAGCATTAAAAGCATAATTGTAAC
Found at i:598950 original size:89 final size:89
Alignment explanation
Indices: 598799--598970 Score: 326
Period size: 89 Copynumber: 1.9 Consensus size: 89
598789 TTCTCATATC
598799 GTACACGTAGACAAATAAAACATTTGTTAATTAAACACATTTAAAGAATGGAATGATTGTACAGG
1 GTACACGTAGACAAATAAAACATTTGTTAATTAAACACATTTAAAGAATGGAATGATTGTACAGG
598864 GTTAACCTGTATTTAGGAATGATT
66 GTTAACCTGTATTTAGGAATGATT
* *
598888 GTACACGTAGATAAATAAAACATTTGTTAATTAAACACATTTAAAGAATGTAATGATTGTACAGG
1 GTACACGTAGACAAATAAAACATTTGTTAATTAAACACATTTAAAGAATGGAATGATTGTACAGG
598953 GTTAACCTGTATTTAGGA
66 GTTAACCTGTATTTAGGA
598971 TTTGAATCCA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (89 bp):
GTACACGTAGACAAATAAAACATTTGTTAATTAAACACATTTAAAGAATGGAATGATTGTACAGG
GTTAACCTGTATTTAGGAATGATT
Found at i:610915 original size:31 final size:29
Alignment explanation
Indices: 610846--610919 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
610836 ACAAAACAAT
**
610846 AACATAAGTGACTAAAACGTAATATTTCA
1 AACATAAGTGACTAAAACGTAATATGGCA
*
610875 AACATAAGTGACTAAAATGTAATATGAGGCA
1 AACATAAGTGACTAAAACGTAATAT--GGCA
*
610906 AACAAAAGTGACTA
1 AACATAAGTGACTA
610920 TTTTTTTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAATATGGCA
Found at i:627548 original size:31 final size:29
Alignment explanation
Indices: 627510--627608 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 29
627500 CTAACGGCTC
* *
627510 AGTGACTAAAATGTTACAACGTGATAACATA
1 AGTGACTAAAATGTAAC-ACGTCA-AACATA
* **
627541 AGTGACTAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACACGTCAAACATA
*
627570 AGTGACTAAAATGTAAC-CTGTGCCAAACAAA
1 AGTGACTAAAATGTAACAC-GT--CAAACATA
627601 AGTGACTA
1 AGTGACTA
627609 TTTTGGTAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
29 23 0.41
30 3 0.05
31 30 0.54
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.23
Consensus pattern (29 bp):
AGTGACTAAAATGTAACACGTCAAACATA
Found at i:636416 original size:14 final size:14
Alignment explanation
Indices: 636393--636423 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
636383 TGTCTCGTTC
*
636393 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
636407 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
636421 TTA
1 TTA
636424 AAACAATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:637181 original size:92 final size:92
Alignment explanation
Indices: 637017--637203 Score: 313
Period size: 92 Copynumber: 2.0 Consensus size: 92
637007 AATTTGTCAT
** *
637017 TTTTTAGGTGAAGGTGAAGTCTTTTTTGTTTGGGTTAATCATAGTATGGTTAATGATTACTTTGA
1 TTTTTAGGCAAAGGTGAAGTCTTTGTTGTTTGGGTTAATCATAGTATGGTTAATGATTACTTTGA
*
637082 GGTTATTTCAATGTACAAAATGACATC
66 GGCTATTTCAATGTACAAAATGACATC
*
637109 TTTTTAGGCAAAGGTGAAGTCTTTGTTGTTTGGGTTAATCATTGTATGGTTAATGATTACTTTGT
1 TTTTTAGGCAAAGGTGAAGTCTTTGTTGTTTGGGTTAATCATAGTATGGTTAATGATTACTTTG-
637174 A-GCTATTTCAATGTACAAAATGACATC
65 AGGCTATTTCAATGTACAAAATGACATC
637201 TTT
1 TTT
637204 AATTAATATT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 88 0.99
93 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.44
Consensus pattern (92 bp):
TTTTTAGGCAAAGGTGAAGTCTTTGTTGTTTGGGTTAATCATAGTATGGTTAATGATTACTTTGA
GGCTATTTCAATGTACAAAATGACATC
Found at i:651435 original size:17 final size:18
Alignment explanation
Indices: 651413--651447 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
651403 TAATTTGCTT
651413 TTTTTTTTTG-GGGGGGG
1 TTTTTTTTTGTGGGGGGG
651430 TTTTTTTTTGTGGGGGGG
1 TTTTTTTTTGTGGGGGGG
651448 GGGGGGGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (18 bp):
TTTTTTTTTGTGGGGGGG
Found at i:651435 original size:19 final size:19
Alignment explanation
Indices: 651411--651448 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
651401 ACTAATTTGC
*
651411 TTTTTTTTTTTGGGGGGGG
1 TTTTTTTTTGTGGGGGGGG
651430 TTTTTTTTTGTGGGGGGGG
1 TTTTTTTTTGTGGGGGGGG
651449 GGGGGGGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.45, T:0.55
Consensus pattern (19 bp):
TTTTTTTTTGTGGGGGGGG
Found at i:656115 original size:9 final size:9
Alignment explanation
Indices: 656101--656132 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
656091 TTCTTTCCCT
656101 TTTCTTTTC
1 TTTCTTTTC
656110 TTTCTTTTC
1 TTTCTTTTC
656119 TTTCTTTTTC
1 TTTC-TTTTC
656129 TTTC
1 TTTC
656133 CGTTTCGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:656131 original size:29 final size:33
Alignment explanation
Indices: 656090--656160 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
656080 TTCTCCTTCA
* * * *
656090 TTTCTTTCCCTTTTCTTTTCTTTCTTTTCTTTCTT
1 TTTCTTT-CCGTTTCGTTTCTATC-TTGCTTTCTT
656125 TTTCTTTCCGTTTCGTTTCTATCTTGCTTTCTT
1 TTTCTTTCCGTTTCGTTTCTATCTTGCTTTCTT
656158 TTT
1 TTT
656161 ATTTATAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 12 0.38
34 13 0.41
35 7 0.22
ACGTcount: A:0.01, C:0.24, G:0.04, T:0.70
Consensus pattern (33 bp):
TTTCTTTCCGTTTCGTTTCTATCTTGCTTTCTT
Found at i:658832 original size:19 final size:20
Alignment explanation
Indices: 658780--658838 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
658770 TAAATATGAG
*
658780 TTTATTAATATTTTAATTTGAT
1 TTTATTATTATTTT-A-TTGAT
*
658802 TTTAAATATTATTTTATT-AT
1 TTT-ATTATTATTTTATTGAT
658822 TTTATTATTATTTTATT
1 TTTATTATTATTTTATT
658839 TAGTATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 13 0.39
20 5 0.15
21 2 0.06
22 4 0.12
23 9 0.27
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTATTATTATTTTATTGAT
Found at i:662808 original size:22 final size:21
Alignment explanation
Indices: 662783--662840 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
662773 AAAAGTAATG
662783 ATTAATTAGTTAAGAAAACATA
1 ATTAATTA-TTAAGAAAACATA
* * *
662805 ATTAATTAATTAATTAAAGCTTA
1 ATTAATT-ATTAA-GAAAACATA
662828 ATTAATTATTAAG
1 ATTAATTATTAAG
662841 TCATGTATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 16 0.53
23 14 0.47
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (21 bp):
ATTAATTATTAAGAAAACATA
Found at i:668602 original size:43 final size:43
Alignment explanation
Indices: 668555--668733 Score: 286
Period size: 43 Copynumber: 4.2 Consensus size: 43
668545 GTCTTATATG
** * * *
668555 GAAATCTCGTATCGATGCTAATAGTCCAACTATGGTCTTACAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACAC
*
668598 GAAATCTCAAATCGATGCCAATAGCCGAGCTATGGTCTTACAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACAC
*
668641 GAAATCTCAAATTGATGCCAATAGCCCAGCTATGGTCTTACAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACAC
*
668684 GAAATCTCAAATTGATGCCAATAGCCCAGCTATGGTCTTACAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACAC
668727 GAAATCT
1 GAAATCT
668734 AACCTCGGAA
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 128 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACAC
Found at i:668891 original size:31 final size:30
Alignment explanation
Indices: 668850--668932 Score: 121
Period size: 31 Copynumber: 2.7 Consensus size: 30
668840 ATCCAATGCT
* *
668850 CAAATCAATTCGGCAATATATATCCATATA
1 CAAATCAATTCGGCAATGTATATCCACATA
* *
668880 CGAATCAAATTCGGCAATGTATATCTACATA
1 CAAATC-AATTCGGCAATGTATATCCACATA
668911 CAAATCAATTCGGCAATGTATA
1 CAAATCAATTCGGCAATGTATA
668933 AAACATATAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 21 0.45
31 26 0.55
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATATCCACATA
Found at i:668943 original size:31 final size:30
Alignment explanation
Indices: 668850--668943 Score: 100
Period size: 31 Copynumber: 3.1 Consensus size: 30
668840 ATCCAATGCT
* **
668850 CAAATCAATTCGGCAATATATATCCATATA
1 CAAATCAATTCGGCAATGTATAAACATATA
* * *
668880 CGAATCAAATTCGGCAATGTAT-ATCTACATA
1 CAAATC-AATTCGGCAATGTATAAAC-ATATA
668911 CAAATCAATTCGGCAATGTATAAAACATATA
1 CAAATCAATTCGGCAATGTAT-AAACATATA
668942 CA
1 CA
668944 TTTAAATTCA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
30 21 0.40
31 29 0.56
32 2 0.04
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.28
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATAAACATATA
Found at i:671158 original size:27 final size:27
Alignment explanation
Indices: 671117--671171 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
671107 TAAGAATTAG
671117 ATAGTACTAGGAGTTAACAATGCTAAA
1 ATAGTACTAGGAGTTAACAATGCTAAA
*
671144 ATAGTACTAGTAGTTAACAATGCTAAA
1 ATAGTACTAGGAGTTAACAATGCTAAA
671171 A
1 A
671172 CTTGCATGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.27
Consensus pattern (27 bp):
ATAGTACTAGGAGTTAACAATGCTAAA
Found at i:672245 original size:25 final size:25
Alignment explanation
Indices: 672209--672263 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
672199 TAAACTAATT
**
672209 TAATTTTCTATTTTTTAAATTTTGTA
1 TAATTTTCTATTCATTAAATTTTG-A
672235 TAATTTT-TATTCATTAAATTTTGA
1 TAATTTTCTATTCATTAAATTTTGA
672259 TAATT
1 TAATT
672264 CTCCTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 6 0.22
25 14 0.52
26 7 0.26
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (25 bp):
TAATTTTCTATTCATTAAATTTTGA
Found at i:674445 original size:2 final size:2
Alignment explanation
Indices: 674438--674476 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
674428 CACTTTCTTT
* *
674438 TA TA TA TA TA TA TA TA TA TA TA TT TA TA AA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
674477 GTGTGTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:691351 original size:26 final size:22
Alignment explanation
Indices: 691304--691347 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
691294 ATCACGAAAG
691304 TTGCAAGAAAGAAGTTGTCTTT
1 TTGCAAGAAAGAAGTTGTCTTT
691326 TTGCAAGAAAGAAGTTGTCTTT
1 TTGCAAGAAAGAAGTTGTCTTT
691348 CTTTACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (22 bp):
TTGCAAGAAAGAAGTTGTCTTT
Found at i:691820 original size:15 final size:14
Alignment explanation
Indices: 691796--691825 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
691786 AAAACAAAAC
691796 AAATAAGAAAGAAA
1 AAATAAGAAAGAAA
691810 AAATAAAGAAAGAAA
1 AAAT-AAGAAAGAAA
691825 A
1 A
691826 GAAAATGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (14 bp):
AAATAAGAAAGAAA
Found at i:701751 original size:19 final size:21
Alignment explanation
Indices: 701729--701774 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
701719 AAATTTTCAT
701729 ATTTAAAGTT-TT-AAAAATA
1 ATTTAAAGTTCTTGAAAAATA
*
701748 ATTTAAAAGTTCTTGAAAAATT
1 ATTT-AAAGTTCTTGAAAAATA
701770 ATTTA
1 ATTTA
701775 TTTTTAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 4 0.17
20 6 0.26
21 3 0.13
22 10 0.43
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (21 bp):
ATTTAAAGTTCTTGAAAAATA
Found at i:704594 original size:39 final size:39
Alignment explanation
Indices: 704536--704620 Score: 143
Period size: 39 Copynumber: 2.2 Consensus size: 39
704526 GTGTCTTAGC
* *
704536 CACCATCTGTGCCTGCTGCATATGTATCTAGTCAGAGTT
1 CACCATCTGTGCCTACTGCATATGTACCTAGTCAGAGTT
704575 CACCATCTGTGCCTACTGCATATGTACCTAGTCAGAGTT
1 CACCATCTGTGCCTACTGCATATGTACCTAGTCAGAGTT
*
704614 CATCATC
1 CACCATC
704621 GGGTTGGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (39 bp):
CACCATCTGTGCCTACTGCATATGTACCTAGTCAGAGTT
Found at i:704764 original size:7 final size:7
Alignment explanation
Indices: 704752--704781 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
704742 TAACTAATAT
704752 CTGCTAA
1 CTGCTAA
704759 CTGCTAA
1 CTGCTAA
704766 CTGCTAA
1 CTGCTAA
704773 CTGCTAA
1 CTGCTAA
704780 CT
1 CT
704782 ACTATTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (7 bp):
CTGCTAA
Found at i:704767 original size:21 final size:21
Alignment explanation
Indices: 704742--704781 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
704732 CTAACCAACT
*
704742 TAACTAATATCTGCTAACTGC
1 TAACTAATAACTGCTAACTGC
**
704763 TAACTGCTAACTGCTAACT
1 TAACTAATAACTGCTAACT
704782 ACTATTAACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (21 bp):
TAACTAATAACTGCTAACTGC
Found at i:708608 original size:25 final size:25
Alignment explanation
Indices: 708580--708629 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
708570 AGTTTAAAAT
*
708580 GTATTGGATCACCACTGAGTTGTAA
1 GTATTGAATCACCACTGAGTTGTAA
* *
708605 GTATTGAATCATCATTGAGTTGTAA
1 GTATTGAATCACCACTGAGTTGTAA
708630 AAAGCTCAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (25 bp):
GTATTGAATCACCACTGAGTTGTAA
Found at i:708913 original size:27 final size:27
Alignment explanation
Indices: 708883--708935 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
708873 AAGCATGCTT
* *
708883 TTTTAATTTTTA-ATTTTTATTTGTATG
1 TTTT-ATTTTTATATTTTGATGTGTATG
708910 TTTTATTTTTATATTTTGATGTGTAT
1 TTTTATTTTTATATTTTGATGTGTAT
708936 TAAATAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (27 bp):
TTTTATTTTTATATTTTGATGTGTATG
Found at i:709745 original size:274 final size:275
Alignment explanation
Indices: 709332--709881 Score: 1084
Period size: 274 Copynumber: 2.0 Consensus size: 275
709322 TTAGCCACAA
709332 AAATAATAGTAGTAGTTATTTAATAAAAATGTATATTAATCATTTCCTAATTAACTTAGTATCCG
1 AAATAATAGTA-TAGTTATTTAATAAAAATGTATATTAATCATTTCCTAATTAACTTAGTATCCG
709397 GTTAATTTGTGACCCTAACTCAATAAAATTTTTAATTTAAATAAATTTTTTTAAACTTATTTTAA
65 GTTAATTTGTGACCCTAACTCAATAAAATTTTTAATTTAAATAAATTTTTTTAAACTTATTTTAA
709462 TCTTTGTATAACTGTTATAAATAATTCAATCACTTTAAAGTAAAATTTTCTAATCAAAACTGTAT
130 TCTTTGTATAACTGTTATAAATAATTCAATCACTTTAAAGTAAAATTTTCTAATCAAAACTGTAT
709527 TGATATATAAGTTTCAAATTCTGCTTTAAAAAATCTTTAATATTAATTCTGTTTTATTTGAAAAA
195 TGATATATAAGTTTCAAATTCTGCTTTAAAAAATCTTTAATATTAATTCTGTTTTATTTGAAAAA
709592 TAATAATTTAAATTAT
260 TAATAATTTAAATTAT
709608 AAATAATAGT-TAGTTATTTAATAAAAATGTATATTAATCATTTCCTAATTAACTTAGTATCCGG
1 AAATAATAGTATAGTTATTTAATAAAAATGTATATTAATCATTTCCTAATTAACTTAGTATCCGG
709672 TTAATTTGTGACCCTAACTCAATAAAATTTTTAATTTAAATAAATTTTTTTAAACTTATTTTAAT
66 TTAATTTGTGACCCTAACTCAATAAAATTTTTAATTTAAATAAATTTTTTTAAACTTATTTTAAT
709737 CTTTGTATAACTGTTATAAATAATTCAATCACTTTAAAGTAAAATTTTCTAATCAAAACTGTATT
131 CTTTGTATAACTGTTATAAATAATTCAATCACTTTAAAGTAAAATTTTCTAATCAAAACTGTATT
709802 GATATATAAGTTTCAAATTCTGCTTTAAAAAATCTTTAATATTAATTCTGTTTTATTTGAAAAAT
196 GATATATAAGTTTCAAATTCTGCTTTAAAAAATCTTTAATATTAATTCTGTTTTATTTGAAAAAT
709867 AATAATTTAAATTAT
261 AATAATTTAAATTAT
709882 GATAATAAGT
Statistics
Matches: 274, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
274 264 0.96
276 10 0.04
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.44
Consensus pattern (275 bp):
AAATAATAGTATAGTTATTTAATAAAAATGTATATTAATCATTTCCTAATTAACTTAGTATCCGG
TTAATTTGTGACCCTAACTCAATAAAATTTTTAATTTAAATAAATTTTTTTAAACTTATTTTAAT
CTTTGTATAACTGTTATAAATAATTCAATCACTTTAAAGTAAAATTTTCTAATCAAAACTGTATT
GATATATAAGTTTCAAATTCTGCTTTAAAAAATCTTTAATATTAATTCTGTTTTATTTGAAAAAT
AATAATTTAAATTAT
Found at i:715485 original size:6 final size:7
Alignment explanation
Indices: 715471--715496 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
715461 CATTAAATTT
715471 AAATAAA
1 AAATAAA
715478 AAATAAA
1 AAATAAA
715485 AAATAAA
1 AAATAAA
715492 AAATA
1 AAATA
715497 TATATTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:721068 original size:2 final size:2
Alignment explanation
Indices: 721063--721087 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
721053 TGCAAAAAAA
721063 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
721088 AAATATGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:721231 original size:21 final size:21
Alignment explanation
Indices: 721205--721246 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
721195 TTTATCTGTT
721205 AAATTTAGAGTATGAATTTTG
1 AAATTTAGAGTATGAATTTTG
721226 AAATTTAGAGTATGAATTTTG
1 AAATTTAGAGTATGAATTTTG
721247 GTTAAGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
AAATTTAGAGTATGAATTTTG
Found at i:736223 original size:1 final size:1
Alignment explanation
Indices: 736217--736244 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
736207 AGAAATAGAA
736217 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
736245 ACTAATATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:737277 original size:63 final size:63
Alignment explanation
Indices: 737170--737358 Score: 308
Period size: 63 Copynumber: 3.0 Consensus size: 63
737160 GAAATAATAG
*
737170 AAAGAGACAAAGGAA-CAGTATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
1 AAAGAGAGAAAGGAACCA-TATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
* *
737233 AATGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTAGT
1 AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
* * *
737296 AAAGAGAGAAAGGAACCATCTGCACAGTAAGAGGTCATCAAATAAACGAGAAGGTTCTGTATT
1 AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
737359 TGCTGTTTGC
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
63 115 0.98
64 2 0.02
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (63 bp):
AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
Found at i:739528 original size:2 final size:2
Alignment explanation
Indices: 739521--739564 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
739511 CATTAGGTTC
739521 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
739563 CT
1 CT
739565 TTATATTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:743591 original size:18 final size:18
Alignment explanation
Indices: 743568--743606 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
743558 CAAGGAGGTC
743568 CTAAAAAGGACCATGATG
1 CTAAAAAGGACCATGATG
*
743586 CTAAAATGGACCATGATG
1 CTAAAAAGGACCATGATG
743604 CTA
1 CTA
743607 TCTTTGCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.21
Consensus pattern (18 bp):
CTAAAAAGGACCATGATG
Found at i:746987 original size:33 final size:34
Alignment explanation
Indices: 746945--747009 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
746935 CAAACACCAA
* *
746945 AAAATATTTTCCAGTAA-AATTTTACAGAAAAGT
1 AAAACATTTTCCAGAAATAATTTTACAGAAAAGT
*
746978 AAAACATTTTCCAGAAATAATTTTACGGAAAA
1 AAAACATTTTCCAGAAATAATTTTACAGAAAA
747010 TATTTTACTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 15 0.54
34 13 0.46
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (34 bp):
AAAACATTTTCCAGAAATAATTTTACAGAAAAGT
Found at i:755335 original size:61 final size:62
Alignment explanation
Indices: 755220--755343 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 62
755210 TGTACTCATG
755220 TATGAATATAAAACAGGTAAGCCCTTTTTTTTCATATATTTGGAGGTTCATACCTGTGCTCA
1 TATGAATATAAAACAGGTAAGCCCTTTTTTTTCATATATTTGGAGGTTCATACCTGTGCTCA
*
755282 TATGAATATGAAACAGGTAAGCCC-TTTTTTTCATATATTTGGAGGTTCATACCTGTGCTCA
1 TATGAATATAAAACAGGTAAGCCCTTTTTTTTCATATATTTGGAGGTTCATACCTGTGCTCA
755343 T
1 T
755344 GTTTGAATAT
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
61 38 0.62
62 23 0.38
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (62 bp):
TATGAATATAAAACAGGTAAGCCCTTTTTTTTCATATATTTGGAGGTTCATACCTGTGCTCA
Found at i:756973 original size:4 final size:4
Alignment explanation
Indices: 756966--757009 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
756956 TGCATGCATG
756966 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
757010 TTAACTGACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:760496 original size:28 final size:28
Alignment explanation
Indices: 760464--760518 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
760454 AAATTATATA
760464 TATTTATATTTATAAATTTTAATTTTTT
1 TATTTATATTTATAAATTTTAATTTTTT
* * **
760492 TATTTTTATTTGTATTTTTTAATTTTT
1 TATTTATATTTATAAATTTTAATTTTT
760519 GTCACATGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (28 bp):
TATTTATATTTATAAATTTTAATTTTTT
Found at i:781932 original size:131 final size:128
Alignment explanation
Indices: 781691--781940 Score: 320
Period size: 131 Copynumber: 1.9 Consensus size: 128
781681 TGGGACATGC
* ** * * * * *
781691 AATATTAAATTGGAATGAAAACTAATTTGGTATGTCAAGATTTTTTTTTTTTTCGGTCATTCTCT
1 AATATTAAATTGGAATGAAAACAAATTTGGTATGTCAAGAGCTCTTTTATGTTCAGTCATTCCCT
* * * *
781756 AGATCATTCACATATGCAGAAAACATTCTTAATTTGTTTGGTCCTACTATACTTTTTGTTTAT
66 AGATCATTCACAAATGCAGAAAACATTCTTAAATCGTTTGGTCCTACCATACTTTTTGTTTAT
781819 AATATTAAATTGGAATGAAAACAAATTTGGTATGTCAAGAAAAGCTCTTTTATGTTCAGTCATTC
1 AATATTAAATTGGAATGAAAACAAATTTGGTATGTCAAG---AGCTCTTTTATGTTCAGTCATTC
* * * * *
781884 CCTATATGATTCATAAATGCAGAGAGCATTCTTAAATCGTTTGGTCCTACCATACTT
63 CCTAGATCATTCACAAATGCAGAAAACATTCTTAAATCGTTTGGTCCTACCATACTT
781941 CATGTATATT
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
128 38 0.37
131 64 0.63
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (128 bp):
AATATTAAATTGGAATGAAAACAAATTTGGTATGTCAAGAGCTCTTTTATGTTCAGTCATTCCCT
AGATCATTCACAAATGCAGAAAACATTCTTAAATCGTTTGGTCCTACCATACTTTTTGTTTAT
Found at i:786685 original size:8 final size:8
Alignment explanation
Indices: 786672--786696 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
786662 CATCGTTGCC
786672 TTAGCACG
1 TTAGCACG
786680 TTAGCACG
1 TTAGCACG
786688 TTAGCACG
1 TTAGCACG
786696 T
1 T
786697 CCACCCTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (8 bp):
TTAGCACG
Found at i:793743 original size:20 final size:20
Alignment explanation
Indices: 793720--793760 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
793710 TTTATAAATT
793720 AATAAATA-ATTATAAAATAA
1 AATAAATATATTA-AAAATAA
*
793740 AATAATTATATTAAAAATAA
1 AATAAATATATTAAAAATAA
793760 A
1 A
793761 TCTATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AATAAATATATTAAAAATAA
Found at i:793761 original size:19 final size:17
Alignment explanation
Indices: 793720--793761 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
793710 TTTATAAATT
793720 AATAAATAATTATAAAA
1 AATAAATAATTATAAAA
*
793737 TA-AAATAATTATATTAAA
1 AATAAATAATTATA--AAA
793755 AATAAAT
1 AATAAAT
793762 CTATAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
16 11 0.55
17 1 0.05
18 4 0.20
19 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAAATAATTATAAAA
Found at i:794797 original size:31 final size:29
Alignment explanation
Indices: 794725--794805 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
794715 ATTAGCATGG
*
794725 AGGATTTAATTGACTTTTTATTATTTTACA
1 AGGACTTAATTGA-TTTTTATTATTTTACA
*
794755 ATGACTTAATTGATTTATTATTATTTTACGA
1 AGGACTTAATTGATTT-TTATTATTTTAC-A
* *
794786 GGGGCTTAATTGATTCTTTA
1 AGGACTTAATTGATT-TTTA
794806 AGTTAAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 3 0.07
30 23 0.53
31 16 0.37
32 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (29 bp):
AGGACTTAATTGATTTTTATTATTTTACA
Found at i:794896 original size:17 final size:19
Alignment explanation
Indices: 794854--794898 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
794844 TTAAAAATAT
794854 AAATTATAAAATTCATAAAA
1 AAATTA-AAAATTCATAAAA
*
794874 ATATTAAAAATT-A-AAAA
1 AAATTAAAAATTCATAAAA
794891 AAATTAAA
1 AAATTAAA
794899 TGTTATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 11 0.48
18 1 0.04
19 6 0.26
20 5 0.22
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATTAAAAATTCATAAAA
Found at i:795569 original size:29 final size:30
Alignment explanation
Indices: 795506--795570 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
795496 AAACTTTCTA
* * *
795506 TAATTTTTAGTAATTTTTCTAATTATTTAT
1 TAATTTCTAATAATTTTTCTAATGATTTAT
* *
795536 AAATTTCTAATAATTTTT-TAATGATTTTT
1 TAATTTCTAATAATTTTTCTAATGATTTAT
795565 TAATTT
1 TAATTT
795571 ATATTTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (30 bp):
TAATTTCTAATAATTTTTCTAATGATTTAT
Found at i:795569 original size:40 final size:40
Alignment explanation
Indices: 795490--795569 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
795480 AAATTAAAAC
*
795490 ATTTAAAAACTTTCTATAATTTTTAGTAATTTTTCTAATT
1 ATTTAAAAACTTTCTATAATTTTTAATAATTTTTCTAATT
* *
795530 ATTTATAAA-TTTCTAATAATTTTTTAATGATTTTT-TAATT
1 ATTTAAAAACTTTCT-ATAA-TTTTTAATAATTTTTCTAATT
795570 TATATTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 5 0.14
40 17 0.49
41 13 0.37
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (40 bp):
ATTTAAAAACTTTCTATAATTTTTAATAATTTTTCTAATT
Found at i:795806 original size:31 final size:31
Alignment explanation
Indices: 795771--795840 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
795761 AAGGGACTTT
*
795771 ATTGGGTAGAAATCATGATTCAAATGGCTCA
1 ATTGGGTAGAAATAATGATTCAAATGGCTCA
*
795802 ATTGGGTAGAAATAATGATTCAATTGGCTCA
1 ATTGGGTAGAAATAATGATTCAAATGGCTCA
795833 ATTGGGTA
1 ATTGGGTA
795841 CACTTTTCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (31 bp):
ATTGGGTAGAAATAATGATTCAAATGGCTCA
Found at i:804405 original size:1 final size:1
Alignment explanation
Indices: 804401--804441 Score: 73
Period size: 1 Copynumber: 41.0 Consensus size: 1
804391 AAATTCCTTC
*
804401 TTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
804442 ACCGTGAGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.02, G:0.00, T:0.98
Consensus pattern (1 bp):
T
Found at i:808795 original size:23 final size:23
Alignment explanation
Indices: 808768--808839 Score: 58
Period size: 24 Copynumber: 3.1 Consensus size: 23
808758 TTAAAATTAG
808768 TTAATTAAAATCCAAATTTAAAT
1 TTAATTAAAATCCAAATTTAAAT
** *
808791 TTAA-TACTATCCAAATAATAAAT
1 TTAATTAAAATCCAAAT-TTAAAT
* *
808814 TTAGATT-AATTCAAAATTGTAAAT
1 TTA-ATTAAAATCCAAATT-TAAAT
808838 TT
1 TT
808840 CAAATATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
22 10 0.27
23 12 0.32
24 14 0.38
25 1 0.03
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (23 bp):
TTAATTAAAATCCAAATTTAAAT
Found at i:813253 original size:21 final size:20
Alignment explanation
Indices: 813228--813292 Score: 60
Period size: 21 Copynumber: 3.2 Consensus size: 20
813218 ATATTAAAAA
*
813228 TTTAAATATATATTTATACTT
1 TTTAAATA-ATATTTATAATT
* *
813249 TTT-AATAATATTAATAGTT
1 TTTAAATAATATTTATAATT
* *
813268 TATTTAATAATTTTTATAATT
1 T-TTAAATAATATTTATAATT
813289 TTTA
1 TTTA
813293 TTTTTAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
19 11 0.31
20 8 0.22
21 17 0.47
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTAAATAATATTTATAATT
Found at i:814208 original size:25 final size:25
Alignment explanation
Indices: 814180--814228 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
814170 ATATTTTCTA
*
814180 CTTAAATCA-AATATAAATAATTAAT
1 CTTAAAT-AGAATAAAAATAATTAAT
*
814205 CTTAAATAGTATAAAAATAATTAA
1 CTTAAATAGAATAAAAATAATTAA
814229 CTAGAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (25 bp):
CTTAAATAGAATAAAAATAATTAAT
Found at i:814228 original size:19 final size:19
Alignment explanation
Indices: 814206--814248 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
814196 ATAATTAATC
*
814206 TTAAATAGTATAAAAAT-AA
1 TTAAATAGAAT-AAAATGAA
*
814225 TTAACTAGAATAAAATGAA
1 TTAAATAGAATAAAATGAA
814244 TTAAA
1 TTAAA
814249 AATAAATAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
TTAAATAGAATAAAATGAA
Found at i:815157 original size:43 final size:43
Alignment explanation
Indices: 815109--815370 Score: 273
Period size: 43 Copynumber: 6.1 Consensus size: 43
815099 GCATCGCTAA
*
815109 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATAAC
*
815152 CTTTAGCGGCGCTTTTC-CAACAAACGCCGCTAAAGACCA-AGAG
1 CTTTAGCGGCGCTTTTCTC-ACAAACGCCGCTAAAGACCATA-AC
* * * *
815195 CATTAGTGGCGCTTTTCTCACAAACGCTGCTAAAGA-CAAAGAC
1 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATA-AC
* * *
815238 CTTTAGCGGCACTTTCCCCACAAACGCCGCTAAAGACCATAAC
1 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATAAC
* * * * *
815281 CTTTAGCGACGTTTTTTGTCACAAACGCCGCTATAGATCA-AAC
1 CTTTAGCGGCG-CTTTTCTCACAAACGCCGCTAAAGACCATAAC
* * * * * *
815324 CTTTAGCAGCGCTTCTCGCAAAAACGCCACTAAA-AACATAAC
1 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATAAC
815366 CTTTA
1 CTTTA
815371 AAAAAAATTA
Statistics
Matches: 181, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
41 3 0.02
42 27 0.15
43 125 0.69
44 26 0.14
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATAAC
Found at i:815349 original size:129 final size:129
Alignment explanation
Indices: 815109--815350 Score: 308
Period size: 129 Copynumber: 1.9 Consensus size: 129
815099 GCATCGCTAA
* * * * *
815109 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCAACA
1 CTTTAGCGGCACTTTCCCCACAAACGCCGCTAAAGACCATAACCTTTAGCGACGCTTTTCCAACA
* ** * * *
815174 AACGCCGCTAAAGACCAAGAGCATTAGTGGCGCTTTTCTCACAAACGCTGCTAAAGACAAAGAC
66 AACGCCGCTAAAGACCAAGACCATTAGCAGCGCTTCTCGCAAAAACGCTGCTAAAGACAAAGAC
* *
815238 CTTTAGCGGCACTTTCCCCACAAACGCCGCTAAAGACCATAACCTTTAGCGACGTTTTTTGTC-A
1 CTTTAGCGGCACTTTCCCCACAAACGCCGCTAAAGACCATAACCTTTAGCGACG-CTTTT-CCAA
* * *
815302 CAAACGCCGCTATAGATCAA-ACCTTTAGCAGCGCTTCTCGCAAAAACGC
64 CAAACGCCGCTAAAGACCAAGACCATTAGCAGCGCTTCTCGCAAAAACGC
815351 CACTAAAAAC
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
129 71 0.75
130 23 0.24
131 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (129 bp):
CTTTAGCGGCACTTTCCCCACAAACGCCGCTAAAGACCATAACCTTTAGCGACGCTTTTCCAACA
AACGCCGCTAAAGACCAAGACCATTAGCAGCGCTTCTCGCAAAAACGCTGCTAAAGACAAAGAC
Found at i:819397 original size:146 final size:148
Alignment explanation
Indices: 819187--819507 Score: 504
Period size: 146 Copynumber: 2.2 Consensus size: 148
819177 CGGCGTTTAT
*
819187 AAAACGCCGCTATTGCTTATCTATTGCGGCGTTTTTATAAAAAACGCCGCAAAAAATTATTTTAT
1 AAAACGCCGCTATTGCTTATCTTTTGCGGCGTTTTTATAAAAAACGCCGCAAAAAATTATTTTAT
* * * *
819252 TTGGAATAAAACGACGCTGTTTTGCTAT-ATAAAATGGCGCTA-TTTTTTAAAATAAAATTATTT
66 TTAGAATAAAACGACACTATTTTGCTATGATAAAAGGGCGCTATTTTTTTAAAATAAAATTATTT
819315 TTTGTGGCGTTTTTTAAA
131 TTTGTGGCGTTTTTTAAA
* *
819333 AAAACGCCGCTATTGATTAACTTTTGCGGCGTTTTTCAT-AAAAACGCCGCAAAAAATTATTTTA
1 AAAACGCCGCTATTGCTTATCTTTTGCGGCGTTTTT-ATAAAAAACGCCGCAAAAAATTATTTTA
* * * *
819397 TTTAGAATAAAACGACACTATTTTGCTATGCTAAGAGGGCGCTATTTTTTTTAAGTAAAATTATT
65 TTTAGAATAAAACGACACTATTTTGCTATGATAAAAGGGCGCTATTTTTTTAAAATAAAATTATT
*
819462 TTTTGTGGCGTTTTTTATA
130 TTTTGTGGCGTTTTTTAAA
819481 AAAACGCCGCTATTGCTTATCTTTTGC
1 AAAACGCCGCTATTGCTTATCTTTTGC
819508 TAAAAATCTT
Statistics
Matches: 158, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
146 84 0.53
147 13 0.08
148 61 0.39
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (148 bp):
AAAACGCCGCTATTGCTTATCTTTTGCGGCGTTTTTATAAAAAACGCCGCAAAAAATTATTTTAT
TTAGAATAAAACGACACTATTTTGCTATGATAAAAGGGCGCTATTTTTTTAAAATAAAATTATTT
TTTGTGGCGTTTTTTAAA
Found at i:819541 original size:148 final size:144
Alignment explanation
Indices: 819228--819512 Score: 390
Period size: 148 Copynumber: 1.9 Consensus size: 144
819218 TTTTTATAAA
* * * *
819228 AAACGCCGCAAAAAATTATTTTATTTGGAATAAAACGACGCTGTTTTGCTATATAAAATGGCGCT
1 AAACGCCGCAAAAAATTATTTTATTTAGAATAAAACGACACTATTTTGCTATATAAAAGGGCGCT
819293 ATTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTAAAAAAACGCCGCTATTGATTAACTTTT
66 ATTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTAAAAAAACGCCGCTATTGATTAACTTTT
****
819358 GCGGCGTTTTTCAT
131 GCAAAATTTTTCAT
* *
819372 AAAAACGCCGCAAAAAATTATTTTATTTAGAATAAAACGACACTATTTTGCTATGCTAAGAGGGC
1 --AAACGCCGCAAAAAATTATTTTATTTAGAATAAAACGACACTATTTTGCTAT-ATAAAAGGGC
* * * * *
819437 GCTATTTTTTTTAAGTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTATC
63 GCTA-TTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTAAAAAAACGCCGCTATTGATTAAC
819502 TTTTGCTAAAA
127 TTTTGC-AAAA
819513 ATCTTTTATT
Statistics
Matches: 121, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
146 49 0.40
147 11 0.09
148 61 0.50
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (144 bp):
AAACGCCGCAAAAAATTATTTTATTTAGAATAAAACGACACTATTTTGCTATATAAAAGGGCGCT
ATTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTAAAAAAACGCCGCTATTGATTAACTTTT
GCAAAATTTTTCAT
Found at i:820755 original size:19 final size:19
Alignment explanation
Indices: 820731--820791 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
820721 AAATTCTAAA
820731 CCCTAACCCGACCCAGAAT
1 CCCTAACCCGACCCAGAAT
* * *
820750 CCCTAA-TC--TCTA-AA-
1 CCCTAACCCGACCCAGAAT
820764 CCCTAACCCGACCCAGAAT
1 CCCTAACCCGACCCAGAAT
820783 CCCTAACCC
1 CCCTAACCC
820792 CTAAACATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
14 6 0.19
15 3 0.10
16 2 0.06
17 2 0.06
18 3 0.10
19 15 0.48
ACGTcount: A:0.31, C:0.48, G:0.07, T:0.15
Consensus pattern (19 bp):
CCCTAACCCGACCCAGAAT
Found at i:820767 original size:33 final size:33
Alignment explanation
Indices: 820725--820797 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
820715 TAATCTAAAT
*
820725 TCTAAACCCTAACCCGACCCAGAATCCCTAATC
1 TCTAAACCCTAACCCGACCCAGAATCCCTAACC
820758 TCTAAACCCTAACCCGACCCAGAATCCCTAACC
1 TCTAAACCCTAACCCGACCCAGAATCCCTAACC
*
820791 CCTAAAC
1 TCTAAAC
820798 ATTATTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.34, C:0.44, G:0.05, T:0.16
Consensus pattern (33 bp):
TCTAAACCCTAACCCGACCCAGAATCCCTAACC
Found at i:820851 original size:7 final size:7
Alignment explanation
Indices: 820839--820864 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
820829 TTAATCTAAA
820839 CCTAACC
1 CCTAACC
820846 CCTAACC
1 CCTAACC
820853 CCTAACC
1 CCTAACC
820860 CCTAA
1 CCTAA
820865 ATCCATAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15
Consensus pattern (7 bp):
CCTAACC
Found at i:820978 original size:7 final size:7
Alignment explanation
Indices: 820966--820996 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
820956 ATTAAATTAG
820966 AATCCCT
1 AATCCCT
820973 AATCCCT
1 AATCCCT
820980 AATCCCT
1 AATCCCT
820987 AATCCCT
1 AATCCCT
820994 AAT
1 AAT
820997 TTCATAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.29
Consensus pattern (7 bp):
AATCCCT
Found at i:821538 original size:41 final size:41
Alignment explanation
Indices: 821481--821722 Score: 313
Period size: 41 Copynumber: 5.9 Consensus size: 41
821471 AGATTTTATT
* **
821481 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCTAGAGC
1 ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGAGC
* * **
821522 ATTAGCGGCGCTTTTTCAAAAACGCCGCCAAAGATCCGAGC
1 ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGAGC
* * * *
821563 ATCAGCGGCACTTCTTAAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGAGC
* * * *
821604 ATTAGCGACGCTTATTCGAAAACACCGCTAAAGGCCCCAGC
1 ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
821645 ATTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGAGC
*
821686 ATTAGCGACGCTTATTCAAAAACGCCGCTAAAGGCCC
1 ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCC
821723 CAAAAACTCA
Statistics
Matches: 170, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 170 1.00
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.18
Consensus pattern (41 bp):
ATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGAGC
Done.