Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold306
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 585619
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 41328 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:288898 original size:16 final size:14
Alignment explanation
Indices: 288871--288907 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
288861 TTGGTTGAAT
288871 AATATTTGATTTTG
1 AATATTTGATTTTG
288885 ATATATTATGATTTTG
1 A-ATATT-TGATTTTG
288901 AATATTT
1 AATATTT
288908 AGTTAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 2 0.10
15 10 0.48
16 9 0.43
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (14 bp):
AATATTTGATTTTG
Found at i:290920 original size:13 final size:13
Alignment explanation
Indices: 290904--290962 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
290894 TAATGCTTTT
290904 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
290917 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
* *
290930 GAAAAGTGCTTTT
1 GAAAAGTGCTGTG
* * *
290943 GAGAAGTGCTTTT
1 GAAAAGTGCTGTG
290956 GAAAAGT
1 GAAAAGT
290963 TTTGTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (13 bp):
GAAAAGTGCTGTG
Found at i:295472 original size:50 final size:50
Alignment explanation
Indices: 295401--295683 Score: 194
Period size: 50 Copynumber: 5.7 Consensus size: 50
295391 GTCGGGAAAC
* ** *
295401 AAGATTCGCCATCGTATCTTCAATATGTTCCACTACACCGCCAGGAAAGT
1 AAGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCGCCAGGAAAGT
* * * * * ** * **
295451 AAGATTCGTCATTGTGGCTTCAATCTTTTCAATTGCAATGTC-GGAAAAC
1 AAGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCGCCAGGAAAGT
* * *
295500 AAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAAGG-AAGT
1 AAGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCGCC-AGGAAAGT
* * ** * * ** ** *
295550 AAGATTCGCCATTGTAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAA-C
1 AAGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCG-CCAGGAAAGT
* * * * * *
295600 AAGATCCGCCGTCGTGGTTTCAATCTGTTCCACTACACCACCAGGGAAGT
1 AAGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCGCCAGGAAAGT
* * *
295650 AAGATTCACCGTTGTGGCTTCAATCTATTCCACT
1 AAGATTCGCCATTGTGGCTTCAATCTGTTCCACT
295684 GTAATGCCAA
Statistics
Matches: 165, Mismatches: 63, Indels: 10
0.69 0.26 0.04
Matches are distributed among these distances:
49 41 0.25
50 119 0.72
51 5 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (50 bp):
AAGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCGCCAGGAAAGT
Found at i:295563 original size:99 final size:99
Alignment explanation
Indices: 295389--295675 Score: 423
Period size: 99 Copynumber: 2.9 Consensus size: 99
295379 TTTAACTGCG
* * ** *
295389 ATGTCGGGAAACAAGATTCGCCATCGTATCTTCAATATGTTCCACTACACCGCC-AGGAAAGTAA
1 ATGTCGGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAAGG-AAGTAA
*
295453 GATTCGTCATTGTGGCTTCAATCTTTTCAATTGCA
65 GATTCGCCATTGTGGCTTCAATCTTTTCAATTGCA
*
295488 ATGTCGGAAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAAGGAAGTAAG
1 ATGTCGGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAAGGAAGTAAG
* *
295553 ATTCGCCATTGTAGCTTCAATCTTTTTAATTGCA
66 ATTCGCCATTGTGGCTTCAATCTTTTCAATTGCA
* * *
295587 ATGTCGGGGAAACAAGATCCGCCGTCGTGGTTTCAATCTGTTCCACTACACCACCAGGGAAGTAA
1 ATGTC-GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAAGGAAGTAA
* *
295652 GATTCACCGTTGTGGCTTCAATCT
65 GATTCGCCATTGTGGCTTCAATCT
295676 ATTCCACTGT
Statistics
Matches: 170, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
99 91 0.54
100 79 0.46
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (99 bp):
ATGTCGGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAAGGAAGTAAG
ATTCGCCATTGTGGCTTCAATCTTTTCAATTGCA
Found at i:295980 original size:88 final size:88
Alignment explanation
Indices: 295871--296049 Score: 259
Period size: 88 Copynumber: 2.0 Consensus size: 88
295861 GGCGATAAGA
* * * ** * *
295871 CTGGTGTCCTCGATCTGCTTCGCTGCCAGTACAGGAAGGTAAGATCTGCTATTTTCAACCTACTC
1 CTGGTATCCTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTACTAGTTTCAACCTACTC
*
295936 CACTGCTGCGCAGGGAGACAAGG
66 CACGGCTGCGCAGGGAGACAAGG
*
295959 CTGGTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTACTAGTTTCAACCTACTC
1 CTGGTATCCTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTACTAGTTTCAACCTACTC
* *
296024 CACGGCTGCTCAGGGAGATAAGG
66 CACGGCTGCGCAGGGAGACAAGG
296047 CTG
1 CTG
296050 AAGTTTCACC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 80 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (88 bp):
CTGGTATCCTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTACTAGTTTCAACCTACTC
CACGGCTGCGCAGGGAGACAAGG
Found at i:297234 original size:18 final size:18
Alignment explanation
Indices: 297207--297251 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
297197 TCGCCTTGGC
*
297207 CTCTTCTTTTCTTTTTCT
1 CTCTTCTTTTCTTCTTCT
*
297225 CTCTTTTTTTTCTTCTTCT
1 CTC-TTCTTTTCTTCTTCT
297244 -TCTTCTTT
1 CTCTTCTTT
297252 CATTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 5 0.22
18 5 0.22
19 13 0.57
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (18 bp):
CTCTTCTTTTCTTCTTCT
Found at i:297243 original size:25 final size:25
Alignment explanation
Indices: 297210--297261 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
297200 CCTTGGCCTC
*
297210 TTCTTTTCTTTTTCTCTC-TTTTTT
1 TTCTTTTCTTCTTCTCTCATTTTTT
*
297234 TTCTTCTTCTTCTTCTTTCATTTTTT
1 TTCTT-TTCTTCTTCTCTCATTTTTT
297260 TT
1 TT
297262 AAGAAAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 11 0.46
26 8 0.33
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (25 bp):
TTCTTTTCTTCTTCTCTCATTTTTT
Found at i:307317 original size:10 final size:10
Alignment explanation
Indices: 307219--307327 Score: 54
Period size: 10 Copynumber: 11.6 Consensus size: 10
307209 TAGTGTATGA
*
307219 ATATATATAT
1 ATATATAAAT
*
307229 ATATATACAT
1 ATATATAAAT
*
307239 AT-TATAAAAA
1 ATATAT-AAAT
* *
307249 ATGTATAAAC
1 ATATATAAAT
* *
307259 ATATATATAG
1 ATATATAAAT
307269 AT-TATAAA-
1 ATATATAAAT
**
307277 ATATGGAAA-
1 ATATATAAAT
*
307286 ATGTATAAAT
1 ATATATAAAT
307296 AT-TAT-AA-
1 ATATATAAAT
307303 A-ATATAAAT
1 ATATATAAAT
*
307312 ATATATACAT
1 ATATATAAAT
307322 ATATAT
1 ATATAT
307328 GCGTATAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
7 4 0.05
8 6 0.08
9 22 0.29
10 42 0.55
11 3 0.04
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (10 bp):
ATATATAAAT
Found at i:307335 original size:33 final size:35
Alignment explanation
Indices: 307298--307386 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 35
307288 GTATAAATAT
307298 TATAAAATATAAATATATATAC-ATATATATGC-G
1 TATAAAATATAAATATATATACGATATATATGCAG
* * *
307331 TATAAAA-ACTAAATACATATGCGTGTATATATGCAGG
1 TATAAAATA-TAAATATATATACG-ATATATATGCA-G
307368 TATAATAATATATAATATA
1 TATAA-AATATA-AATATA
307387 ATAATGATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
32 1 0.02
33 18 0.41
35 9 0.20
37 6 0.14
38 4 0.09
39 6 0.14
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (35 bp):
TATAAAATATAAATATATATACGATATATATGCAG
Found at i:307377 original size:3 final size:3
Alignment explanation
Indices: 307369--307427 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
307359 ATATGCAGGT
* *
307369 ATA ATA ATA TATA AT- ATA ATA ATG ATA ATA AT- ATA ATA ATA ACA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
307413 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
307428 ACTTGAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 6 0.13
3 37 0.80
4 3 0.07
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:315191 original size:26 final size:27
Alignment explanation
Indices: 315137--315192 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
315127 TTCTTCCCTA
* *
315137 TTTTACCCCTAGTAAAATTTTAGCGAT
1 TTTTACCCCGAGTAAAATTTTAGCAAT
315164 TTTTACCCCGA-TAAAATTTT-GACAAT
1 TTTTACCCCGAGTAAAATTTTAG-CAAT
315190 TTT
1 TTT
315193 ACCTTTGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.04
26 15 0.58
27 10 0.38
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (27 bp):
TTTTACCCCGAGTAAAATTTTAGCAAT
Found at i:322267 original size:20 final size:21
Alignment explanation
Indices: 322244--322282 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
322234 TTAAATAATT
*
322244 TATATCATATGA-AAATTAAA
1 TATATCAAATGAGAAATTAAA
*
322264 TATATTAAATGAGAAATTA
1 TATATCAAATGAGAAATTA
322283 TATTATTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (21 bp):
TATATCAAATGAGAAATTAAA
Found at i:322685 original size:31 final size:31
Alignment explanation
Indices: 322649--322716 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
322639 AAAATATGCT
322649 AAGTTGTTTAAATTTAAAATTTTAATAAAAG
1 AAGTTGTTTAAATTTAAAATTTTAATAAAAG
322680 AAGTTGTTTAAATTTAAAATTTTAATAAAAG
1 AAGTTGTTTAAATTTAAAATTTTAATAAAAG
322711 AAGTTG
1 AAGTTG
322717 ATTGAGTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (31 bp):
AAGTTGTTTAAATTTAAAATTTTAATAAAAG
Found at i:323459 original size:24 final size:22
Alignment explanation
Indices: 323432--323479 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
323422 TAAATTAGTG
323432 TTTAACCAAGTCCTTAACATGCAA
1 TTTAACCAAG-CCTTAA-ATGCAA
* *
323456 TTTACCCAAGCCTTAAGTGCAA
1 TTTAACCAAGCCTTAAATGCAA
323478 TT
1 TT
323480 CCACCATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
24 9 0.41
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.31
Consensus pattern (22 bp):
TTTAACCAAGCCTTAAATGCAA
Found at i:332592 original size:29 final size:29
Alignment explanation
Indices: 332558--332641 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
332548 CTCTTTCATT
*
332558 TTCCTTCAATGTTGTTCATAATCCGTTGA
1 TTCCTTCAATCTTGTTCATAATCCGTTGA
* * *
332587 TTCCTTTCATTCCT-TTCATAATTCGTTGA
1 TTCC-TTCAATCTTGTTCATAATCCGTTGA
*
332616 TTCCTTCAATTTTGTTCATAATCCGT
1 TTCCTTCAATCTTGTTCATAATCCGT
332642 GGTTAAGGTA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 6 0.13
29 33 0.73
30 6 0.13
ACGTcount: A:0.19, C:0.23, G:0.10, T:0.49
Consensus pattern (29 bp):
TTCCTTCAATCTTGTTCATAATCCGTTGA
Found at i:346062 original size:27 final size:26
Alignment explanation
Indices: 346023--346073 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
346013 GTTCAGGATA
*
346023 GTTTTTTGTTTTTATATTAATTTTTT
1 GTTTTTTGTTTTTAAATTAATTTTTT
*
346049 GTTTTTTGATTTTTAAATTTATTTT
1 GTTTTTTG-TTTTTAAATTAATTTT
346074 GATAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.75
Consensus pattern (26 bp):
GTTTTTTGTTTTTAAATTAATTTTTT
Found at i:351786 original size:143 final size:144
Alignment explanation
Indices: 351528--351805 Score: 380
Period size: 143 Copynumber: 1.9 Consensus size: 144
351518 TGTTTGTAAG
* * *
351528 TTTTTTCATTTAGGTTCACACGGCTTTAGTAAGTTACACAGCCTAGACACACAACCGTGTGGCTC
1 TTTTTGCATTTAGGTCCACACGGCTTCAGTAAGTTACACAGCCTAGACACACAACCGTGTGGCTC
* * * *
351593 CAGTTTCAAACTATCATCCTTTCTAACACGACTTATGCACATGACCGTGTGACCCT-ATTTGAAA
66 CAGTTTCAAACGATCATCCTTTCTAAAACGACCTATGCACACGACCGTGTGACCCTGATTTGAAA
351657 ATTTTTCAATTTAA
131 ATTTTTCAATTTAA
* * * *
351671 TTTTTGCATTTAGGTCCACACGGCTTCAGTGAGTTACTCAGCCTGGACACACAACTGTGTGGCTC
1 TTTTTGCATTTAGGTCCACACGGCTTCAGTAAGTTACACAGCCTAGACACACAACCGTGTGGCTC
* * * * * *
351736 CAGTTTCACACGATCA-CTCTTTGTAAAACGGCCTATGCATACGATCGTGTGACCCTGTTTTGAA
66 CAGTTTCAAACGATCATC-CTTTCTAAAACGACCTATGCACACGACCGTGTGACCCTGATTTGAA
351800 AATTTT
130 AATTTT
351806 CCTGTTTGTG
Statistics
Matches: 116, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
142 1 0.01
143 103 0.89
144 12 0.10
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (144 bp):
TTTTTGCATTTAGGTCCACACGGCTTCAGTAAGTTACACAGCCTAGACACACAACCGTGTGGCTC
CAGTTTCAAACGATCATCCTTTCTAAAACGACCTATGCACACGACCGTGTGACCCTGATTTGAAA
ATTTTTCAATTTAA
Found at i:354778 original size:22 final size:22
Alignment explanation
Indices: 354753--354820 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
354743 AATTTCTTTG
354753 AATTATTAATAGAAGACTTAGT
1 AATTATTAATAGAAGACTTAGT
*** *
354775 AATTA--AATTA-ATTTCTTTG-
1 AATTATTAA-TAGAAGACTTAGT
354794 AATTATTAATAGAAGACTTAGT
1 AATTATTAATAGAAGACTTAGT
354816 AATTA
1 AATTA
354821 AATTAATTTC
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
19 5 0.15
20 9 0.27
21 9 0.27
22 10 0.30
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.41
Consensus pattern (22 bp):
AATTATTAATAGAAGACTTAGT
Found at i:354864 original size:41 final size:41
Alignment explanation
Indices: 354719--354842 Score: 248
Period size: 41 Copynumber: 3.0 Consensus size: 41
354709 CACCATAAAC
354719 AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
1 AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
354760 AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
1 AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
354801 AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
1 AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
354842 A
1 A
354843 TTTAATTAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 83 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.44
Consensus pattern (41 bp):
AATAGAAGACTTAGTAATTAAATTAATTTCTTTGAATTATT
Found at i:356615 original size:22 final size:23
Alignment explanation
Indices: 356582--356624 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
356572 GTTTTCAGTC
356582 TTTATATTTTTATACATTTAAAA
1 TTTATATTTTTATACATTTAAAA
*
356605 TTTA-ATTTTTATACTTTTAA
1 TTTATATTTTTATACATTTAA
356625 TTCTAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTATATTTTTATACATTTAAAA
Found at i:376950 original size:6 final size:6
Alignment explanation
Indices: 376939--376967 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
376929 TCATTCTTCA
376939 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
376968 CTTAATAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:379402 original size:18 final size:18
Alignment explanation
Indices: 379379--379415 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
379369 ATGCCAGGTG
* *
379379 TGTATCCTAGCCTTTATA
1 TGTATCCTAACCCTTATA
379397 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
379415 T
1 T
379416 ATTTCCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.43
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:379691 original size:21 final size:21
Alignment explanation
Indices: 379667--379710 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
379657 CACCCACAAT
*
379667 CGGAGCAACCACAACCCTCAC
1 CGGAGCAACCACAACCCCCAC
*
379688 CGGAGCAACCCCAACCCCCAC
1 CGGAGCAACCACAACCCCCAC
379709 CG
1 CG
379711 AAAGCTGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.52, G:0.16, T:0.02
Consensus pattern (21 bp):
CGGAGCAACCACAACCCCCAC
Found at i:381132 original size:125 final size:126
Alignment explanation
Indices: 380890--381222 Score: 490
Period size: 125 Copynumber: 2.7 Consensus size: 126
380880 GTGCATGTCC
* * * * * *
380890 CATCATGCTTGAAGCGTTTTTAACATTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTTCAT
1 CATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
* * *
380955 GAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCTTCAATTTTGCT-GTCAATG
66 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTAAT-AATG
*
381016 CATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCACAAAATTA-TTTTTCAG
1 CATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
* * *
381080 GAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCATCATTTTTGCTAATAGTG
66 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTAATAATG
* * * *
381141 CATTCTACTTGAAGCATTTTTGACACTATTTGTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
1 CATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
381206 GAACTACTGTAGAAAAA
66 GAACTACTGTAGAAAAA
381223 AACTAAAATC
Statistics
Matches: 187, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
125 111 0.59
126 76 0.41
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (126 bp):
CATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTAATAATG
Found at i:381321 original size:34 final size:34
Alignment explanation
Indices: 381282--381387 Score: 126
Period size: 33 Copynumber: 3.2 Consensus size: 34
381272 ACACAATATT
*
381282 ATTTTTTTAAAAA-AATAAACCCAAATTTAATTA
1 ATTTTTTTAAAAACAATAAACCCAAAATTAATTA
*
381315 ATTTTTTTAAAAACACTAAACCCAAAATTAATTA
1 ATTTTTTTAAAAACAATAAACCCAAAATTAATTA
* ** * * *
381349 A-TTTTTTAAAACCCTTAAACTCTAATTTAATTA
1 ATTTTTTTAAAAACAATAAACCCAAAATTAATTA
381382 ATTTTT
1 ATTTTT
381388 AAAAAAAGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
33 40 0.63
34 23 0.37
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (34 bp):
ATTTTTTTAAAAACAATAAACCCAAAATTAATTA
Found at i:381468 original size:21 final size:21
Alignment explanation
Indices: 381439--381509 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 21
381429 TAAAACCTAG
*
381439 AACCTTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
** *** **
381460 AACCCTAAACCATACAAACCT
1 AACCCTAAATTATTTTAACAA
* *
381481 AATCTTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
381502 AACCCTAA
1 AACCCTAA
381510 CCCTAAAAAA
Statistics
Matches: 31, Mismatches: 19, Indels: 0
0.62 0.38 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (21 bp):
AACCCTAAATTATTTTAACAA
Found at i:381521 original size:42 final size:42
Alignment explanation
Indices: 381442--381524 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
381432 AACCTAGAAC
*
381442 CTTAAATTATTTTAACAAAACCCTAAACCATACAAACCTAAT
1 CTTAAATTATTTTAACAAAACCCTAAACCATAAAAACCTAAT
*
381484 CTTAAATTATTTTAACAAAACCCT-AACCCTAAAAAACCTAA
1 CTTAAATTATTTTAACAAAACCCTAAACCAT-AAAAACCTAA
381525 ACCAAAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 5 0.13
42 33 0.87
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (42 bp):
CTTAAATTATTTTAACAAAACCCTAAACCATAAAAACCTAAT
Found at i:381538 original size:15 final size:16
Alignment explanation
Indices: 381500--381538 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
381490 TTATTTTAAC
*
381500 AAAACCCTAACCCTAA
1 AAAACCCTAAACCTAA
381516 AAAA-CCTAAACC-AA
1 AAAACCCTAAACCTAA
381530 AAAACCCTA
1 AAAACCCTA
381539 GGGACTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 11 0.52
16 4 0.19
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.10
Consensus pattern (16 bp):
AAAACCCTAAACCTAA
Found at i:381948 original size:25 final size:25
Alignment explanation
Indices: 381911--381963 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
381901 TGAACATGTT
*
381911 TATTCTTTAAATTTATTAA-ATAGTA
1 TATTCTTTAAATTT-TTAAGATAATA
381936 TATT-TTTATAATTTTTAAGATAATA
1 TATTCTTTA-AATTTTTAAGATAATA
381961 TAT
1 TAT
381964 ATATGCTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (25 bp):
TATTCTTTAAATTTTTAAGATAATA
Found at i:385645 original size:418 final size:418
Alignment explanation
Indices: 384868--385708 Score: 1172
Period size: 418 Copynumber: 2.0 Consensus size: 418
384858 TTACAGAGAG
* *
384868 TTGTTTCTTTTGTAACAAGTTTGGACATGTGAAGAAAGAATGTTCCAAATATCACACCTAGCCTG
1 TTGTTTCTTTTGTAACAAGTCTAGACATGTGAAGAAAGAATGTTCCAAATATCACACCTAGCCTG
** * * *
384933 CAAATAAATTTATAATTCTTACTTTGGCCTGTTCTGAAATTAAGTTAGTTTCAGTGCCTAGAAAC
66 CAAATAAAGGTATAATTCTTACTTTAGCATGTTCTGAAATTAAGTTAGTTTCAGTACCTAGAAAC
* * * *
384998 ACTTGGTGGATAACTTTTAGTTCTACTACTCACATAAGTGTTCCTATGCAAGGTTGCCTGAGCTA
131 ACCTGGTGGATAACTTCTAGTTCTACTACTCACATAAGTGTTCCTATGCAAGGCTGCCTAAGCTA
* * * *
385063 CCGAAAGCCAAGTGGTGTTAAAAGACACATCTTTGTGGGCAATGAAAAATCGGTAGAAATGGAAG
196 CCGAAAGCCAAGTGATGGTAAAAGACACATCTTCGTGGGCAATGAAAAATCGATAGAAATGGAAG
*
385128 CAATATGGGCATTTTAGGTTGCTATTAGGAATTTATTTAATTTTTATTTAGATTTAAAAGACAAT
261 CAATATGGGCATTTTAGGTTGCTATTAGGAATTTATTTAATTTTCATTTAGATTTAAAAGACAAT
* *
385193 TTTGTTGTATCGTCTTTTAGACGGAGTTTAGTTTATGTTTCTTTGTTGGA-AAATTTTGGATATT
326 TTTGTTGTATCGTCTTTTAGACGCAATTTAGTTTATGTTTCTTTGTTGGACAAA-TTTGGATATT
* *
385257 ATTGTTCATTCGAAAACAATCAGTTTAGT
390 ATTATTCATTCGAAAACAATCAATTTAGT
* * * * *
385286 TTGTTTCTTTTGTAACGAGTCTAGACATGTGAAGAAAGAATGTGT-TAAATATCACACTTGGCGT
1 TTGTTTCTTTTGTAACAAGTCTAGACATGTGAAGAAAGAATGT-TCCAAATATCACACCTAGCCT
* * * * *
385350 GCAAATAAAGGTGTAATTCTTACTTTAGTATGTTCT-AAGGTTAATTTAGTTTCAGTATCTAGAA
65 GCAAATAAAGGTATAATTCTTACTTTAGCATGTTCTGAA-ATTAAGTTAGTTTCAGTACCTAGAA
* * *
385414 ACACCTGGTGGATAGA-TTCTGGTTCTACTACTCACATAAGTGTTTCTATGCAAGGCTGTCTAAG
129 ACACCTGGTGGATA-ACTTCTAGTTCTACTACTCACATAAGTGTTCCTATGCAAGGCTGCCTAAG
* * * * * *
385478 CTACCGAAAGTCAAGTGATGGTGAAAGACACATCTTCGTGGGCGATGGAAAATCGATGGAAGTGG
193 CTACCGAAAGCCAAGTGATGGTAAAAGACACATCTTCGTGGGCAATGAAAAATCGATAGAAATGG
* *
385543 AAGCAAT-TGGGCATTTTAGGTTGTTATTAGGAACTTTTTTTAATTTTCATTTAGATTTAAAAGA
258 AAGCAATATGGGCATTTTAGGTTGCTATTAGGAA-TTTATTTAATTTTCATTTAGATTTAAAAGA
* * *
385607 CAGTTTTGTTGTA-CTGTCTTTTAGATGCAATTTAGTTTATGTTTTTTTGTTGGACAAATTTGGA
322 CAATTTTGTTGTATC-GTCTTTTAGACGCAATTTAGTTTATGTTTCTTTGTTGGACAAATTTGGA
* *
385671 TATTATTATTCATTTGGAAACAATCAATTTAGT
386 TATTATTATTCATTCGAAAACAATCAATTTAGT
385704 TTGTT
1 TTGTT
385709 ATTAAATTCA
Statistics
Matches: 371, Mismatches: 46, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
417 28 0.08
418 338 0.91
419 5 0.01
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (418 bp):
TTGTTTCTTTTGTAACAAGTCTAGACATGTGAAGAAAGAATGTTCCAAATATCACACCTAGCCTG
CAAATAAAGGTATAATTCTTACTTTAGCATGTTCTGAAATTAAGTTAGTTTCAGTACCTAGAAAC
ACCTGGTGGATAACTTCTAGTTCTACTACTCACATAAGTGTTCCTATGCAAGGCTGCCTAAGCTA
CCGAAAGCCAAGTGATGGTAAAAGACACATCTTCGTGGGCAATGAAAAATCGATAGAAATGGAAG
CAATATGGGCATTTTAGGTTGCTATTAGGAATTTATTTAATTTTCATTTAGATTTAAAAGACAAT
TTTGTTGTATCGTCTTTTAGACGCAATTTAGTTTATGTTTCTTTGTTGGACAAATTTGGATATTA
TTATTCATTCGAAAACAATCAATTTAGT
Found at i:385965 original size:172 final size:172
Alignment explanation
Indices: 385673--386021 Score: 680
Period size: 172 Copynumber: 2.0 Consensus size: 172
385663 AATTTGGATA
385673 TTATTATTCATTTGGAAACAATCAATTTAGTTTGTTATTAAATTCAAATGTTATTGGAACTGGTT
1 TTATTATTCATTTGGAAACAATCAATTTAGTTTGTTATTAAATTCAAATGTTATTGGAACTGGTT
385738 ATTTAAATATTTATGACAACCTTTTATTTGCTAGAAACATTTGCATCCTAAAATGAAACCTTACA
66 ATTTAAATATTTATGACAACCTTTTATTTGCTAGAAACATTTGCATCCTAAAATGAAACCTTACA
385803 TGTGGAAACATTTGGTATTACAATATTTACCAAGTGATTATC
131 TGTGGAAACATTTGGTATTACAATATTTACCAAGTGATTATC
*
385845 TTATTGTTCATTTGGAAACAATCAATTTAGTTTGTTATTAAATTCAAATGTTATTGGAACTGGTT
1 TTATTATTCATTTGGAAACAATCAATTTAGTTTGTTATTAAATTCAAATGTTATTGGAACTGGTT
*
385910 ATTTAAATATTTATGACAACCTTTTATTTGCTAGAAACATTTGCATCCTAAAATGAAACCTTGCA
66 ATTTAAATATTTATGACAACCTTTTATTTGCTAGAAACATTTGCATCCTAAAATGAAACCTTACA
385975 TGTGGAAACATTTGGTATTACAATATTTACCAAGTGATTATC
131 TGTGGAAACATTTGGTATTACAATATTTACCAAGTGATTATC
386017 TTATT
1 TTATT
386022 TGGTTTCGAG
Statistics
Matches: 175, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 175 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (172 bp):
TTATTATTCATTTGGAAACAATCAATTTAGTTTGTTATTAAATTCAAATGTTATTGGAACTGGTT
ATTTAAATATTTATGACAACCTTTTATTTGCTAGAAACATTTGCATCCTAAAATGAAACCTTACA
TGTGGAAACATTTGGTATTACAATATTTACCAAGTGATTATC
Found at i:403698 original size:15 final size:15
Alignment explanation
Indices: 403674--403712 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
403664 TAACTCTATT
*
403674 TTACTGTTCCCTTGA
1 TTACTGTTCCATTGA
*
403689 TTATTGTTCCATTGA
1 TTACTGTTCCATTGA
403704 TTACTGTTC
1 TTACTGTTC
403713 ATATATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.15, C:0.21, G:0.13, T:0.51
Consensus pattern (15 bp):
TTACTGTTCCATTGA
Found at i:408348 original size:101 final size:99
Alignment explanation
Indices: 408164--408348 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 99
408154 TGTCCTAATT
408164 ATATAAACATAAAAATTAAAAAAAATTAAAAATTATTAACAACTTAATAATGATATTAACAAAAA
1 ATATAAACATAAAAATTAAAAAAAATTAAAAATTATTAACAACTTAATAATGATATTAACAAAAA
** *
408229 TAAAATATTTAATCATATTAACAATTTAATAAGG
66 TAAAATATAAAATAATATTAACAATTTAATAAGG
* * *
408263 ATATAAACATAAAAAATTAAAAAAGTATATAAAAA-TATTAACAACTTAATAATGGTATTAACTA
1 ATATAAACAT-AAAAATTAAAAAA-AAT-TAAAAATTATTAACAACTTAATAATGATATTAACAA
408327 AAATAAAA-ATAAAAATAATATT
63 AAATAAAATAT-AAAATAATATT
408349 TTCTTACCAT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
99 10 0.13
100 15 0.20
101 45 0.59
102 6 0.08
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.30
Consensus pattern (99 bp):
ATATAAACATAAAAATTAAAAAAAATTAAAAATTATTAACAACTTAATAATGATATTAACAAAAA
TAAAATATAAAATAATATTAACAATTTAATAAGG
Found at i:413664 original size:19 final size:20
Alignment explanation
Indices: 413622--413659 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
413612 AAAAAAAATC
* *
413622 ATTTTTAGATTTTTTCTTGA
1 ATTTTAAGATTTTTTATTGA
413642 ATTTTAAGATTTTTTATT
1 ATTTTAAGATTTTTTATT
413660 TATTTCAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.66
Consensus pattern (20 bp):
ATTTTAAGATTTTTTATTGA
Found at i:419401 original size:1 final size:1
Alignment explanation
Indices: 419397--419460 Score: 110
Period size: 1 Copynumber: 64.0 Consensus size: 1
419387 CAAAAAACAG
* *
419397 AAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
419461 GCACACAATT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.97, C:0.02, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:419428 original size:37 final size:37
Alignment explanation
Indices: 419387--419458 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
419377 GAAACTATTC
* *
419387 CAAAAAACAGAAAAAAAAAAAAAAAAAAAAAAAAATA
1 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
419424 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
419459 AAGCACACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.93, C:0.04, G:0.01, T:0.01
Consensus pattern (37 bp):
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
Found at i:419429 original size:36 final size:36
Alignment explanation
Indices: 419387--419457 Score: 124
Period size: 36 Copynumber: 1.9 Consensus size: 36
419377 GAAACTATTC
*
419387 CAAAAAACAGAAAAAAAAAAAAAAAAAAAAAAAAATA
1 CAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAAATA
419424 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
419458 AAAGCACACA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 26 0.79
37 7 0.21
ACGTcount: A:0.93, C:0.04, G:0.01, T:0.01
Consensus pattern (36 bp):
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
Found at i:422057 original size:16 final size:15
Alignment explanation
Indices: 422038--422069 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
422028 AATTTGAGAG
422038 AGGATTAGTTTGTGAA
1 AGGATTAGTTTG-GAA
422054 AGGATTAGTTTGGAA
1 AGGATTAGTTTGGAA
422069 A
1 A
422070 AAAAAAGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (15 bp):
AGGATTAGTTTGGAA
Found at i:423627 original size:107 final size:107
Alignment explanation
Indices: 423441--423758 Score: 528
Period size: 107 Copynumber: 3.0 Consensus size: 107
423431 CCATACTTTG
* * * *
423441 AAGTTTTAAGAGGATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTCGGGCAC
1 AAGTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
*
423506 ATTTCCTCGATTTTCCAAACGCGAAGTATTGCCTTATTTTAA
66 ATTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTTTAA
* *
423548 AAGTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAGTCGAAACCCAACACGTTAGGGCAC
1 AAGTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
*
423613 ATTTCCTCGATTTTCCAAACGCGAAATATTGTCTTATTTTAA
66 ATTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTTTAA
* *
423655 AAGTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGACAC
1 AAGTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
* *
423720 GTTTTCTCGATTTTCCAAACGCGAAATATTGCCTTATTT
66 ATTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTT
423759 AGAAAAAATT
Statistics
Matches: 196, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
107 196 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (107 bp):
AAGTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
ATTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTTTAA
Found at i:426440 original size:54 final size:54
Alignment explanation
Indices: 426376--426879 Score: 305
Period size: 54 Copynumber: 9.4 Consensus size: 54
426366 TATGCAGCAA
* * * *
426376 GTCGTGATTGTAAATCAACGGGCCGCGAGATTTGTAAAATCCCGTAAGTAGAAG
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* * * * * * * * * *
426430 GTCGTGATTGTCAATCAGCGAACCATGAGATTCATAAATTCTCGTAAGTAAAAT
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* ** * * *
426484 GTCATGA-CTGTAAATCAACATACCACAATATTTGTAAAA-CCACGTAAGTAGAAG
1 GTCGTGATC-GTAAATCAACGGACCACGAGATTCGTAAAATCC-CGTAAGTAGAAG
* * * * *** *** * * *
426538 GCCATGCTCCTAAATCAATATACCGTAAGACTCGTAAAATCCCATAAGTAAAAG
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* * * ** * * * *
426592 GTCGTCAACGTAAAT-AGCGGGTCGCAAGATTCGTAAAATCACATAAGTAGAAG
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* * * * * *
426645 GTCGTGATCGTAAATCAATGAAGCATGAGATTCATAAAATCCCATAAGTAGAAG
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* * * * * * ** *
426699 ATTGTGATTGTAAAT-AAGTGGCCCATGAGATTTTTAAAATCCCGTAAGTAAAAG
1 GTCGTGATCGTAAATCAA-CGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* ** * * *
426753 GTCGTGATCGTAAATCAAAGGACCACGAGATTAATAAAACCCCGTACGTAGAAA
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
* ** * ** * *
426807 GTTGTGATCGTAAATCAGTGGACCGCGAGATTCGTAAAATCCTATAACTAAAAG
1 GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
*
426861 GTCGTGATTGTAAATCAAC
1 GTCGTGATCGTAAATCAAC
426880 TGAAGCTCTT
Statistics
Matches: 338, Mismatches: 105, Indels: 14
0.74 0.23 0.03
Matches are distributed among these distances:
53 44 0.13
54 289 0.86
55 5 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (54 bp):
GTCGTGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCGTAAGTAGAAG
Found at i:427462 original size:348 final size:348
Alignment explanation
Indices: 426795--427575 Score: 902
Period size: 348 Copynumber: 2.2 Consensus size: 348
426785 AATAAAACCC
* * *
426795 CGTACGTAGAAAGTTGTGATCGTAAATCAGTGGACCGCGAGATTCGTAAAATCCTATAACTAAAA
1 CGTAAGTAGAAAGTTGTGATCGTAAATCAGTGGACCGCGAGATTCGAAAAATCCTATAAATAAAA
* *
426860 GGTCGTGATTGTAAATCAACTGAAGCTCTTTAGAAAGTTCCTTGTTTTTCTGAGAAGATCGATCC
66 GGTCGTGATTGTAAATCAACTGAAGCTCTTTAGAAAGTTCCTTGTTTTTCTGAGAAGATCAATCA
* ** *
426925 ATTTCAAGCCACATTTCAGAAGTATAGTGAAAAGAACTAGCTTCAGCCACACAAAGGAATTGTAA
131 AATAAAAGCCACATATCAGAAGTATAGTGAAAAGAACTAGCTTCAGCCACACAAAGGAATTGTAA
* * * **
426990 CAAAGTTGATTCATCTATTCTCCTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACATGGCTAT
196 CAAAATTAATTCATCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACATCACTAT
* * *
427055 ATGCATAATCTCTAACATCTAACTTGCTCTGAAAGGTAGAGTGGTCAGTTTTGAGTTCTT-CTTA
261 ATGCATAATCTCTAACATATAACTTGCTCTGAAAGGCAGAGTGGTCAGTTTTAAGTTCTTCCTTA
427119 A-ACACGACTAGATTCGTAAAATCA
326 ACACAC--CTAGATTCGTAAAATCA
* * * *
427143 CGTATGTAG-AAGATTGTGATTGTAAATCAGTGGATCGCGAGATTCGAAAAATTCTGA-AAGAT-
1 CGTAAGTAGAAAG-TTGTGATCGTAAATCAGTGGACCGCGAGATTCGAAAAATCCT-ATAA-ATA
**
427205 AAAGGTCGTGATTGTAAATCAACTGAAGCT-TTTCA-ATATTTTCCTTGTTTTTCTGA-ACAGAT
63 AAAGGTCGTGATTGTAAATCAACTGAAGCTCTTT-AGA-AAGTTCCTTGTTTTTCTGAGA-AGAT
* * * * **
427267 CAATCAAATAAAAGCCACATATCAGATGTATGGTGAAGAGAACTAGCTTCTGCTTCACAAAGGTA
125 CAATCAAATAAAAGCCACATATCAGAAGTATAGTGAAAAGAACTAGCTTCAGCCACACAAAGG-A
* *
427332 A-TGTAACAAAATTAATTCCA-CTATCCTCTTTCTTTCAAGGTTAGTTTTGAGTTCTTCCTCAAC
189 ATTGTAACAAAATTAATT-CATCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAAC
* * * * * *
427395 A-CACATATATTCATTATCTCTAGCATATAACTTGCTTTGAAGGGCAGA-TAGGTTAGTTTTAAG
253 ATCAC-TATATGCATAATCTCTAACATATAACTTGCTCTGAAAGGCAGAGT-GGTCAGTTTTAAG
*
427458 TTCTTCCTTAACACACCTAGATTCGTAAAATCC
316 TTCTTCCTTAACACACCTAGATTCGTAAAATCA
* * * * *** * * * *
427491 CGTAAGTAGGAGGTCGCGATCGTAAATCAACAGACCGTGAGATTCGTAAAATCCTGTAAGTAAAA
1 CGTAAGTAGAAAGTTGTGATCGTAAATCAGTGGACCGCGAGATTCGAAAAATCCTATAAATAAAA
* * *
427556 TGTCATGATCGTAAATCAAC
66 GGTCGTGATTGTAAATCAAC
427576 GGACTACAAG
Statistics
Matches: 364, Mismatches: 54, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
347 11 0.03
348 336 0.92
349 13 0.04
350 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (348 bp):
CGTAAGTAGAAAGTTGTGATCGTAAATCAGTGGACCGCGAGATTCGAAAAATCCTATAAATAAAA
GGTCGTGATTGTAAATCAACTGAAGCTCTTTAGAAAGTTCCTTGTTTTTCTGAGAAGATCAATCA
AATAAAAGCCACATATCAGAAGTATAGTGAAAAGAACTAGCTTCAGCCACACAAAGGAATTGTAA
CAAAATTAATTCATCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACATCACTAT
ATGCATAATCTCTAACATATAACTTGCTCTGAAAGGCAGAGTGGTCAGTTTTAAGTTCTTCCTTA
ACACACCTAGATTCGTAAAATCA
Found at i:427566 original size:54 final size:53
Alignment explanation
Indices: 427476--427652 Score: 167
Period size: 54 Copynumber: 3.3 Consensus size: 53
427466 TAACACACCT
* ** ** *
427476 AGATTCGTAAAATCCCGTAAGTAGGAGGTCGCGATCGTAAATCAACAGACCGTG
1 AGATTCGTAAAATCCTGTAAGTAAAAGGTCATGATCGTAAATCAAC-GACCATG
* * **
427530 AGATTCGTAAAATCCTGTAAGTAAAATGTCATGATCGTAAATCAACGGACTACA
1 AGATTCGTAAAATCCTGTAAGTAAAAGGTCATGATCGTAAATCAAC-GACCATG
* * **
427584 AGATTCATAAAATCCCT-TAAGTATAAGGTCATGATAATAAATCAACGACCCATG
1 AGATTCGTAAAAT-CCTGTAAGTAAAAGGTCATGATCGTAAATCAACGA-CCATG
* *
427638 AGATTTGTTAAATCC
1 AGATTCGTAAAATCC
427653 CATAAGTAGA
Statistics
Matches: 99, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
53 4 0.04
54 92 0.93
55 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (53 bp):
AGATTCGTAAAATCCTGTAAGTAAAAGGTCATGATCGTAAATCAACGACCATG
Found at i:427815 original size:54 final size:54
Alignment explanation
Indices: 427739--427871 Score: 142
Period size: 54 Copynumber: 2.5 Consensus size: 54
427729 CATATAATCC
* ** * *
427739 AGTAAAAGGTCGTCATCATAAATCAACT-GACCGCGAGTTTCGTAAAACCCCGTA
1 AGTAAAAGGTCGTGATTGTAAATCAA-TAGACCGCGAGATTCGTAAAACCCCGAA
* * * * * * *
427793 AGTAGAAGGTTGTTATTGTAAATCAATAGATCGTGAGATTCGTAAAATCCTGAA
1 AGTAAAAGGTCGTGATTGTAAATCAATAGACCGCGAGATTCGTAAAACCCCGAA
427847 AGTAAAAGGTCGTGATTGTAAATCA
1 AGTAAAAGGTCGTGATTGTAAATCA
427872 GTTAAAGCTT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.02
54 63 0.98
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (54 bp):
AGTAAAAGGTCGTGATTGTAAATCAATAGACCGCGAGATTCGTAAAACCCCGAA
Found at i:428989 original size:15 final size:15
Alignment explanation
Indices: 428969--428998 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
428959 TTGCATAAAG
428969 GGCGAAAAATTGCTC
1 GGCGAAAAATTGCTC
428984 GGCGAAAAATTGCTC
1 GGCGAAAAATTGCTC
428999 AGCAAACACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
GGCGAAAAATTGCTC
Found at i:430190 original size:182 final size:181
Alignment explanation
Indices: 429860--430226 Score: 608
Period size: 182 Copynumber: 2.0 Consensus size: 181
429850 TTGCATTTCG
* * *
429860 TCTACTGGAGTTATTAATTTTTTTTTGTGTTGTTATAGGCCTCGGTAAAATGTTTGATTAAGTAA
1 TCTACTGGAGTTATTAAATTGTGTTTGTGTTGTTATAGGCCTCGGTAAAATGTTTGATTAAGTAA
* *
429925 AACCATGACTAAGTTATTCTTGCATTACAATTGTAAGGTAACTAATAAATTAATTATTTAAACGG
66 AACCATGACTAAGTTATTCTTGCATTACAATTGTAAGGAAACTAATAAACTAATTATTTAAACGG
*
429990 ATTGAAATTGTAATTAATTGACACGATACTCAATAAGTGCATGTTTAATCA
131 ATTGAAATTATAATTAATTGACACGATACTCAATAAGTGCATGTTTAATCA
* *
430041 TCTACTTGAGTTATTAAAATTGTGTTTGTGTTGTTATAGGCCTCGGTAAGATGTTTGATTAAGTA
1 TCTACTGGAGTTATT-AAATTGTGTTTGTGTTGTTATAGGCCTCGGTAAAATGTTTGATTAAGTA
* * *
430106 AAACCATGACTAAGTTATTCTTTCATTGCAATTGTAAGGAAACTAATGAACTAATTATTTAAACG
65 AAACCATGACTAAGTTATTCTTGCATTACAATTGTAAGGAAACTAATAAACTAATTATTTAAACG
* *
430171 GATTGAAATTATAATTAATTGACATGATACTCAATCAGTGCATGTTTAATCA
130 GATTGAAATTATAATTAATTGACACGATACTCAATAAGTGCATGTTTAATCA
430223 TCTA
1 TCTA
430227 AGGTAGCTGA
Statistics
Matches: 172, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
181 14 0.08
182 158 0.92
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (181 bp):
TCTACTGGAGTTATTAAATTGTGTTTGTGTTGTTATAGGCCTCGGTAAAATGTTTGATTAAGTAA
AACCATGACTAAGTTATTCTTGCATTACAATTGTAAGGAAACTAATAAACTAATTATTTAAACGG
ATTGAAATTATAATTAATTGACACGATACTCAATAAGTGCATGTTTAATCA
Found at i:430932 original size:8 final size:8
Alignment explanation
Indices: 430919--430946 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
430909 AAAAGTCATT
430919 ATTTGTGA
1 ATTTGTGA
430927 ATTTGTGA
1 ATTTGTGA
430935 ATTTGTGA
1 ATTTGTGA
430943 ATTT
1 ATTT
430947 TGCATTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (8 bp):
ATTTGTGA
Found at i:433462 original size:5 final size:5
Alignment explanation
Indices: 433452--433478 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
433442 TGGAATTCGC
433452 ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA AT
433479 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:437531 original size:22 final size:19
Alignment explanation
Indices: 437506--437547 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
437496 TGATAATCAT
437506 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
437528 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
437547 T
1 T
437548 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:438145 original size:24 final size:23
Alignment explanation
Indices: 438116--438174 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
438106 AATTTTCTCC
*
438116 TAAATTTTAATTTTATTTAATTATT
1 TAAATTTTAA-TTTATTAAATTA-T
*
438141 TAATTTTTCAATTTATTAAATTAT
1 TAAATTTT-AATTTATTAAATTAT
438165 TAATATTTTA
1 TAA-ATTTTA
438175 TACTAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.17
25 22 0.76
26 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TAAATTTTAATTTATTAAATTAT
Found at i:438275 original size:49 final size:49
Alignment explanation
Indices: 438198--438295 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
438188 TTTGAGAAAA
438198 TATTTGTTTCCATCTTATGTTCAGGTTAATCATGCCTCGCAAGAGAACT
1 TATTTGTTTCCATCTTATGTTCAGGTTAATCATGCCTCGCAAGAGAACT
438247 TATTTGTTTCCATCCTTATGTTCA-GTTAATCATGCCTCGCAAGAGAACT
1 TATTTGTTTCCAT-CTTATGTTCAGGTTAATCATGCCTCGCAAGAGAACT
438296 CATGCCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 38 0.79
50 10 0.21
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (49 bp):
TATTTGTTTCCATCTTATGTTCAGGTTAATCATGCCTCGCAAGAGAACT
Found at i:443600 original size:41 final size:41
Alignment explanation
Indices: 443503--443622 Score: 136
Period size: 41 Copynumber: 3.0 Consensus size: 41
443493 CATGAAATTC
* * * **
443503 GAGATAGCTTCAGCTATTTATGGCACTTATTGTGTGA-TTT
1 GAGATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGACT
*
443543 G-GAATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGACT
1 GAG-ATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGACT
* * *
443584 GAGATAGCTTCAGCTATGTAAGGCAGTTAGTGTGCGAGA
1 GAGATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGA
443623 TTATAATAGC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 31 0.46
41 34 0.51
42 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (41 bp):
GAGATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGACT
Found at i:443632 original size:41 final size:41
Alignment explanation
Indices: 443545--443642 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
443535 TGTGATTTGG
* *
443545 AATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGACTGA
1 AATAGCTTCGGCTATGTAAGGCACTTAGTGTGCGAGACTGA
* * * *
443586 GATAGCTTCAGCTATGTAAGGCAGTTAGTGTGCGAGA-TTA
1 AATAGCTTCGGCTATGTAAGGCACTTAGTGTGCGAGACTGA
443626 TAATAGCTTCGGCTATG
1 -AATAGCTTCGGCTATG
443643 CGATGGCAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 2 0.04
41 46 0.96
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (41 bp):
AATAGCTTCGGCTATGTAAGGCACTTAGTGTGCGAGACTGA
Found at i:444382 original size:46 final size:46
Alignment explanation
Indices: 444329--444665 Score: 548
Period size: 46 Copynumber: 7.3 Consensus size: 46
444319 TTTTATATGT
* * *
444329 TATAATGCTGTCCACTTTGAGCATATTGATACTGTCCAATTTAATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
*
444375 TATAATGCTGTCCATTTTGAGTATATTGATGCTGTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
444421 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
* * *
444467 TATAATGCTGTCCAATTTGAGCATATTAAAGCTGTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
* * *
444513 TATAATGCTGTCCAATTTGAGCATATTAAAGCTGTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
*
444559 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGAAG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
*
444605 TATAATGCTGTCCATTTTGAGCATATTCATGCTGTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
*
444651 TATAAATGTTGTCCA
1 TAT-AATGCTGTCCA
444666 AAACAGGGTA
Statistics
Matches: 275, Mismatches: 15, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
46 265 0.96
47 10 0.04
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (46 bp):
TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
Found at i:445634 original size:54 final size:54
Alignment explanation
Indices: 445543--445907 Score: 283
Period size: 54 Copynumber: 6.8 Consensus size: 54
445533 TAACACGCCA
* * * * * * * *
445543 AGATTCGTAAAAT-TACGTCAGTAGAAGTTTGTCATCGTAAATCAACGAACCGCG
1 AGATTCATAAAATCT-CGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
* *
445597 AGATTCATAAAATCTCGTAAGTAGAAGGTCATGATCGTAAATCAGTGGACCACG
1 AGATTCATAAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
* * * * * * *
445651 AGATTCATAAAATTTCTTAAGTAGAAGGTTGTGATCGTAAATCAGTGCACCGCA
1 AGATTCATAAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
* * * *
445705 AGATT-AGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATTAGCGGACCACG
1 AGATTCA-TAAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
* * * * *
445759 AGATTCATAAAATCTC--AA-AAGTAGGTCGTGATCGTAAATCAGCAGACTATG
1 AGATTCATAAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
* * ** * * * * * *
445810 AGTTTCATAAAATCCCAAAAGTCGAAGGTCATCATCGTAAATTAGCAGACCTCG
1 AGATTCATAAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
* * * * * *
445864 AGAGTCGTGATAA-CCCGTAAGTAAAAGGTCGTGATTGTAAATCA
1 AGATTCAT-AAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCA
445908 ACTAAAGCTT
Statistics
Matches: 244, Mismatches: 60, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
51 39 0.16
52 2 0.01
53 3 0.01
54 195 0.80
55 5 0.02
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (54 bp):
AGATTCATAAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGCGGACCACG
Found at i:445854 original size:105 final size:107
Alignment explanation
Indices: 445597--445866 Score: 287
Period size: 105 Copynumber: 2.5 Consensus size: 107
445587 ACGAACCGCG
* * *
445597 AGATTCATAAAATCTCGTAAGTAGAAGGTCATGATCGTAAATCAGTGGACCACGAGATTCATAAA
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCGTAAATTAGCGGACCACGAGATTCATAAA
* * * * *
445662 ATTTCTTAAGTAGAAGGTTGTGATCGTAAATCAGTGCACCGCA
66 A-TTCTCAAGAAGAAGGTCGTGATCGTAAATCAGAGCACCACA
* * *
445705 AGATT-AGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATTAGCGGACCACGAGATTCATAA
1 AGATTCA-TAAAATCCCGTAAGTAGAAGGTCATGATCGTAAATTAGCGGACCACGAGATTCATAA
* * **
445769 AA-TCTCAA-AAGTAGGTCGTGATCGTAAATCAGCAG-ACTATG
65 AATTCTCAAGAAGAAGGTCGTGATCGTAAATCAG-AGCACCACA
* ** * * * *
445810 AGTTTCATAAAATCCCAAAAGTCGAAGGTCATCATCGTAAATTAGCAGACCTCGAGA
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCGTAAATTAGCGGACCACGAGA
445867 GTCGTGATAA
Statistics
Matches: 134, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
105 68 0.51
106 7 0.05
107 1 0.01
108 58 0.43
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (107 bp):
AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCGTAAATTAGCGGACCACGAGATTCATAAA
ATTCTCAAGAAGAAGGTCGTGATCGTAAATCAGAGCACCACA
Found at i:446243 original size:54 final size:53
Alignment explanation
Indices: 446176--446522 Score: 304
Period size: 54 Copynumber: 6.4 Consensus size: 53
446166 ATTACGTCAC
**
446176 TAGAAGGTCGTGATCGTAAATCAGTGGACCACGAGATTCGTAAAATCTGATAAG
1 TAGAAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCT-ATAAG
* * * * *
446230 CAAAAGGTAGTGATCGTAAATCAGCAGACCACAAGATTTGTAAAATTCCT-TAAG
1 TAGAAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAA-T-CTATAAG
* * * ** * *
446284 TAGAAGATCATGATCATAAA-CTAGTGGACCGCGAGATTCGTAAAATCCTGTAAG
1 TAGAAGGTCGTGATCGTAAATC-AGCAGACCACGAGATTCGTAAAAT-CTATAAG
* *
446338 TAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTTGTAAAATCTAGTAAG
1 TAGAAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTA-TAAG
* * * *
446392 TAGAAGGTCGTGATCATAAATTAGCAGACCATGAGATT-GTTAAAATCCCATAAG
1 TAGAAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCG-TAAAAT-CTATAAG
* * ** ** ** *
446446 TAGAAGGTCGTGATCATAAATAAATAGACCTTGAGATTCAAAAAATCCCATAAG
1 TAGAAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAAT-CTATAAG
* * *
446500 TAAAAGGTTGTGATTGTAAATCA
1 TAGAAGGTCGTGATCGTAAATCA
446523 ACTAAAACTC
Statistics
Matches: 241, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
53 8 0.03
54 227 0.94
55 4 0.02
56 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (53 bp):
TAGAAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTATAAG
Found at i:446448 original size:162 final size:162
Alignment explanation
Indices: 446176--446522 Score: 421
Period size: 162 Copynumber: 2.1 Consensus size: 162
446166 ATTACGTCAC
* **
446176 TAGAAGGTCGTGATCGTAAATCAGTGGACCACGAGATTCGTAAAATCTGATAAGCAAAAGGTAGT
1 TAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTGATAAGCAAAAGGTAGT
* * *
446241 GATCGTAAATCAGCAGACCACAAGATTTGTAAAATTCCTTAAGTAGAAGATCATGATCATAAACT
66 GATCATAAATCAGCAGACCACAAGATTTGTAAAATCCCATAAGTAGAAGATCATGATCATAAA-T
* * ** **
446306 -AGTGGACCGCGAGATTCGTAAAATCCTGTAAG
130 AAATAGACCGCGAGATTCAAAAAATCCCATAAG
* * * *
446338 TAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTTGTAAAATCT-AGTAAGTAGAAGGTCG
1 TAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTGA-TAAGCAAAAGGTAG
* ** * *
446402 TGATCATAAATTAGCAGACCATGAGA-TTGTTAAAATCCCATAAGTAGAAGGTCGTGATCATAAA
65 TGATCATAAATCAGCAGACCACAAGATTTG-TAAAATCCCATAAGTAGAAGATCATGATCATAAA
**
446466 TAAATAGACCTTGAGATTCAAAAAATCCCATAAG
129 TAAATAGACCGCGAGATTCAAAAAATCCCATAAG
* *
446500 TAAAAGGTTGTGATTGTAAATCA
1 TAGAAGGTTGTGATCGTAAATCA
446523 ACTAAAACTC
Statistics
Matches: 157, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
161 5 0.03
162 152 0.97
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (162 bp):
TAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTGATAAGCAAAAGGTAGT
GATCATAAATCAGCAGACCACAAGATTTGTAAAATCCCATAAGTAGAAGATCATGATCATAAATA
AATAGACCGCGAGATTCAAAAAATCCCATAAG
Found at i:446483 original size:108 final size:108
Alignment explanation
Indices: 446176--446466 Score: 363
Period size: 108 Copynumber: 2.7 Consensus size: 108
446166 ATTACGTCAC
* * ** * *
446176 TAGAAGGTCGTGATCGTAAATCAGTGGACCACGAGATTCGTAAAATCTGATAAGCAAAAGGTAGT
1 TAGAAGGTCGTGATCATAAATTAGTGGACCACGAGATTCGTAAAATCCCATAAGTAGAAGGTAGT
*
446241 GATCGTAAATCAGCAGACCACAAGATTTGTAAAATTCCTTAAG
66 GATCGTAAATCAGCAGACCACGAGATTTGTAAAATTCCTTAAG
* * * * ** *
446284 TAGAAGATCATGATCATAAACTAGTGGACCGCGAGATTCGTAAAATCCTGTAAGTAGAAGGTTGT
1 TAGAAGGTCGTGATCATAAATTAGTGGACCACGAGATTCGTAAAATCCCATAAGTAGAAGGTAGT
446349 GATCGTAAATCAGCAGACCACGAGATTTGTAAAA-T-CTAGTAAG
66 GATCGTAAATCAGCAGACCACGAGATTTGTAAAATTCCT--TAAG
** * *
446392 TAGAAGGTCGTGATCATAAATTAGCAGACCATGAGATT-GTTAAAATCCCATAAGTAGAAGGTCG
1 TAGAAGGTCGTGATCATAAATTAGTGGACCACGAGATTCG-TAAAATCCCATAAGTAGAAGGTAG
*
446456 TGATCATAAAT
65 TGATCGTAAAT
446467 AAATAGACCT
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
106 2 0.01
107 2 0.01
108 152 0.97
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (108 bp):
TAGAAGGTCGTGATCATAAATTAGTGGACCACGAGATTCGTAAAATCCCATAAGTAGAAGGTAGT
GATCGTAAATCAGCAGACCACGAGATTTGTAAAATTCCTTAAG
Found at i:446837 original size:615 final size:611
Alignment explanation
Indices: 445392--446890 Score: 1498
Period size: 612 Copynumber: 2.4 Consensus size: 611
445382 GTTTTAGCGT
* * * * * * * * *
445392 CACAATGGCAATGTAACAAATTTAATTCCTCT-ATCCTCATTTTAAGATTAGTTTTGAGTTCTTC
1 CACAAAGGCAAGGTAACAAAATTGATTCATCTAAT-CTCCTTTCAAGGTCAGTTTTGAGTTCTTC
* * * * * * *
445456 CTCAACACGCC-AATATTAATCATCTCTCGA-ATCAAACTTGCTCTG-AAGGGATGATAGG-CTA
65 CTCAACACGCCTAA-ATGAATAATCTCT-AACATCTAACTTGCTCTGAAAAGCA-GAGAGGTC-A
* * * * * * * * * * * * * * *
445517 ATTTTTAGTTCTTCTTTAACACGCCAAGATTCGTAAAATTACGTCAGTAGAAGTTTGTCATCGTA
126 GTTTTGAGTTATTCCTCAACACGACTAGATTCATAAAATCACGTAACTAGAAGGTCGTGATCATA
** * * * * * * **
445582 AATCAACGAACCGCGAGATTCATAAAATCTCGTAAGTAGAAGGTCA-TGATCGTAAATCAGTGGA
191 AATCAGTGGA-CACGAGATTCGTAAAATCCCGTAAGCAAAAGGT-AGTGATCGTAAATCAGCAGA
* * * ** *
445646 CCACGAGATTCATAAAATTTCTTAAGTAGAAGGTTGTGATCGTAAATCAGTGCACCGCAAGATTA
254 CCACGAGATTCGTAAAATTCCTTAAGTAGAAGATCATGATCATAAATCAGTGCACCGCAAGATTA
* *
445711 GTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATTAGCGGACCACGAGATTCATAAAATCTCA
319 GTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATCAGCAGACCACGAGATTCATAAAATCTCA
* * * * *
445776 AAAGTAGGTCGTGATCGTAAATCAGCAGACTATGAGTTTCATAAAATCCCAAAAGTCGAAGGTCA
384 AAAGAAGGTCGTGATCATAAATCAGCAGACCATGAGATTCATAAAATCCCAAAAGTAGAAGGTCA
* * * ** * *
445841 TCATCGTAAATTAGCAGACCTCGAGAGTCGTGATAACCCGTAAGTAAAAGGTCGTGATTGTAAAT
449 TCATCATAAATAAACAGACCTCGAGAGTCGAAAAAACCCATAAGTAAAAGGTCGTGATTGTAAAT
* * * * *
445906 CAACTAAAGCTTTTCAGAAAGTTCCTTGTTTTTCTGTGCAAATCAATCCATTTCAAGCCTCATTT
514 CAACTAAAACTCTTCAAAAAATTCCTTGTTTTTCTGAGCAAATCAATCCATTTCAAGCCTCATTT
** *
445971 CAGACGTATGGTGAAGAGAACTAGCTTCAGCCT
579 CAGAAATATGGTGAAGAGAACTAGCTTCAGCCA
* * *
446004 CACAAAGGCAAGGTAACAAATTTGATTCCTCTAATCTCCTTTTAAGGTCAGTTTTGAGTTCTTCC
1 CACAAAGGCAAGGTAACAAAATTGATTCATCTAATCTCCTTTCAAGGTCAGTTTTGAGTTCTTCC
* * * *
446069 TCAACACGCCTAAATTAATCATCTCTAGCATCTAACTTGCTCTGAAAAGCAGAGAGGTTAGTTTT
66 TCAACACGCCTAAATGAATAATCTCTAACATCTAACTTGCTCTGAAAAGCAGAGAGGTCAGTTTT
* * * * * * * * *
446134 TAGTTCTTCTTCAACATGCCTAGATTCATTAAATTACGTCACTAGAAGGTCGTGATCGTAAATCA
131 GAGTTATTCCTCAACACGACTAGATTCATAAAATCACGTAACTAGAAGGTCGTGATCATAAATCA
* *
446199 GTGGACCACGAGATTCGTAAAAT-CTGATAAGCAAAAGGTAGTGATCGTAAATCAGCAGACCACA
196 GTGGA-CACGAGATTCGTAAAATCCCG-TAAGCAAAAGGTAGTGATCGTAAATCAGCAGACCACG
* * * *
446263 AGATTTGTAAAATTCCTTAAGTAGAAGATCATGATCATAAA-CTAGTGGACCGCGAGATTCGTAA
259 AGATTCGTAAAATTCCTTAAGTAGAAGATCATGATCATAAATC-AGTGCACCGCAAGATTAGTAA
* * * * **
446327 AATCCTGTAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTTGTAAAATCT-AGTAA
323 AATCCCGTAAGTAGAAAGTCGTGATCATAAATCAGCAGACCACGAGATTCATAAAATCTCA--AA
* ** * *
446391 GTAGAAGGTCGTGATCATAAATTAGCAGACCATGAGATTGTTAAAATCCCATAAGTAGAAGGTCG
386 --AGAAGGTCGTGATCATAAATCAGCAGACCATGAGATTCATAAAATCCCAAAAGTAGAAGGTCA
* * * * *
446456 TGATCATAAATAAATAGACCTTGAGATTC-AAAAAATCCCATAAGTAAAAGGTTGTGATTGTAAA
449 TCATCATAAATAAACAGACCTCGAGAGTCGAAAAAA-CCCATAAGTAAAAGGTCGTGATTGTAAA
* * *
446520 TCAACTAAAACTCTTCAAAAAATTCCTTG-TTTTCTGAG-AAGATCAATCTATTTCAAGCTTCGT
513 TCAACTAAAACTCTTCAAAAAATTCCTTGTTTTTCTGAGCAA-ATCAATCCATTTCAAGCCTCAT
* * *
446583 TTCAGAAATATGGTGAAGAGAACTAGTTTTAGTCA
577 TTCAGAAATATGGTGAAGAGAACTAGCTTCAGCCA
* * *
446618 CACAAAGG-AATTGTAAGAAAATTGATTCATCTATTCTTCTTCTTTCAAGGTCAGTTTTGAGTTC
1 CACAAAGGCAA-GGTAACAAAATTGATTCATCTAATC-TC--CTTTCAAGGTCAGTTTTGAGTTC
** * * * *** *
446682 TTCCTCAACGTGGCTATATGCATAATCTCTAACATCTAACTTGCTCTGAGGGGCAGAGTGGTCAG
62 TTCCTCAACACGCCTAAATGAATAATCTCTAACATCTAACTTGCTCTGAAAAGCAGAGAGGTCAG
* * *
446747 TTTTGAGTTATTCCTGAACACGACTAGATTCGTAAAATCACGTAAGTAGAAGGTCGTGATCATAA
127 TTTTGAGTTATTCCTCAACACGACTAGATTCATAAAATCACGTAACTAGAAGGTCGTGATCATAA
* * * * * *
446812 ATCAGTGGA-ATGTGAGTT-GTAAAATCCCGTAAGTAGAAGGTCGTGATCATAAATCAGCAGACC
192 ATCAGTGGACACGAGA-TTCGTAAAATCCCGTAAGCAAAAGGTAGTGATCGTAAATCAGCAGACC
446875 ACGAGATTCGTAAAAT
256 ACGAGATTCGTAAAAT
446891 CCCGAAACTT
Statistics
Matches: 738, Mismatches: 129, Indels: 37
0.82 0.14 0.04
Matches are distributed among these distances:
611 4 0.01
612 310 0.42
613 14 0.02
614 87 0.12
615 183 0.25
616 4 0.01
617 136 0.18
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (611 bp):
CACAAAGGCAAGGTAACAAAATTGATTCATCTAATCTCCTTTCAAGGTCAGTTTTGAGTTCTTCC
TCAACACGCCTAAATGAATAATCTCTAACATCTAACTTGCTCTGAAAAGCAGAGAGGTCAGTTTT
GAGTTATTCCTCAACACGACTAGATTCATAAAATCACGTAACTAGAAGGTCGTGATCATAAATCA
GTGGACACGAGATTCGTAAAATCCCGTAAGCAAAAGGTAGTGATCGTAAATCAGCAGACCACGAG
ATTCGTAAAATTCCTTAAGTAGAAGATCATGATCATAAATCAGTGCACCGCAAGATTAGTAAAAT
CCCGTAAGTAGAAAGTCGTGATCATAAATCAGCAGACCACGAGATTCATAAAATCTCAAAAGAAG
GTCGTGATCATAAATCAGCAGACCATGAGATTCATAAAATCCCAAAAGTAGAAGGTCATCATCAT
AAATAAACAGACCTCGAGAGTCGAAAAAACCCATAAGTAAAAGGTCGTGATTGTAAATCAACTAA
AACTCTTCAAAAAATTCCTTGTTTTTCTGAGCAAATCAATCCATTTCAAGCCTCATTTCAGAAAT
ATGGTGAAGAGAACTAGCTTCAGCCA
Found at i:447412 original size:54 final size:54
Alignment explanation
Indices: 447230--447414 Score: 162
Period size: 54 Copynumber: 3.4 Consensus size: 54
447220 ACGGGATTCA
* * * * * *
447230 TAAAAGGTTGTAATCGTAAATAAGTG-AGCTGTGAGATTCATATAATCTAGTAAG
1 TAAAAGGTTGTCATCGTAAATCAGCGTA-CTGTGAGATTCGTAAAATCTCGTAAG
* * * *
447284 TAAAA-CTTCATCATTGTAAATCAGC-TGACT-TAGAGTTTCGTAAAATCTCGTAAG
1 TAAAAGGTT-GTCATCGTAAATCAGCGT-ACTGT-GAGATTCGTAAAATCTCGTAAG
* * * *
447338 TAGAAGGTCGTCATCATAAATCAGCGTACTGTGAGATTCGTAAAATCTCGAAAG
1 TAAAAGGTTGTCATCGTAAATCAGCGTACTGTGAGATTCGTAAAATCTCGTAAG
* *
447392 TAAAAGGTTGTGATTGTAAATCA
1 TAAAAGGTTGTCATCGTAAATCA
447415 ACTGAAGCTT
Statistics
Matches: 101, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
53 3 0.03
54 94 0.93
55 4 0.04
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (54 bp):
TAAAAGGTTGTCATCGTAAATCAGCGTACTGTGAGATTCGTAAAATCTCGTAAG
Found at i:448557 original size:347 final size:348
Alignment explanation
Indices: 447834--448559 Score: 742
Period size: 347 Copynumber: 2.1 Consensus size: 348
447824 ACGCAATTTG
* * * * * * * ** * *
447834 TAAAGTCCCGTAAGTAAAAGGTTGTGATCGTAAATCTACTAAAGCTTTTCAGAAAGTTCCTTATT
1 TAAAATCCCATAAGTAAAAGATTGTGATTGTAAATCAATTGAAGCTCGTAAGAAAGTTCCTTGTT
* * * * * * * * * *
447899 TTTCTGAGA-AGATCGAGCCATTTCGAGCCTCATTTCAGACGTTTTGTGAAGAGAACTAGCTTGA
66 TTACT-AAACAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAAAGAACAAGCTTGA
* *
447963 GCCTCACAAGGGCAATACTACAAAATTGATTCCTCTATCTTCATTCTTTCAAGGTCAATTTTGAG
130 GCCTCACAAGGGCAATACTACAAAATTAATTCCTCTATCCTCATTCTTTCAAGGTCAATTTTGAG
* * * *
448028 TTCTTCCTTAACACGCCTATATTAACCATCTCTAGCAACTAACATGCTCTGAAGGAGAGAGAGGT
195 TTCTTCCTCAACACGCCTATATTAACCATCTCTAGCAACTAACATGCTCTAAAGGACAAAGAGGT
* * * * *
448093 CCATTTTGAGTTCTTCCTCAACACACTTATATTCAAAAAATCACGTAAGTAGAAGGTCGTAATCG
260 CCATTTTGAGTTCTTCCTCAACACACCTAGATTCAAAAAACCACGTAAGTAAAAGGTCATAATCG
* *
448158 TAAATCAATGGACTGTGAGATTCC
325 TAAATCAACGGACTGAGAGATTCC
* *
448182 TAAAATCCCGTAAGTAAAAGGTTGTGATTGTAAATCAATTGAAGCTCGTAAGAAAGTTCCTTGTT
1 TAAAATCCCATAAGTAAAAGATTGTGATTGTAAATCAATTGAAGCTCGTAAGAAAGTTCCTTGTT
* * *
448247 TTACTAAACAAATCAATCCATTTCAAGTCTCATTTCAGATGTATGGTGAAAAGAACAAGCTTTAG
66 TTACTAAACAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAAAGAACAAGCTTGAG
* * * * * *
448312 CCTCACAATGGCAAT-GTAACAAATTTAATTCCTCTATCCTCCTT-TTTCAATGTCAGTTTTGAG
131 CCTCACAAGGGCAATACT-ACAAAATTAATTCCTCTATCCTCATTCTTTCAAGGTCAATTTTGAG
* * * * * * * * ** *
448375 TTCTTCCTCAACATGTCTATGTTAACCATTTGTAGCATCTTACTTTTTCTAAAGGCCAAAGAGG-
195 TTCTTCCTCAACACGCCTATATTAACCATCTCTAGCAACTAACATGCTCTAAAGGACAAAGAGGT
* * * * * *
448439 CCAATTTTTAGTTCTTCTTCAACACGCCTAGATTCGTAAAAGCCA-GTAAGTAAAAGGTCATGAT
260 CC-ATTTTGAGTTCTTCCTCAACACACCTAGATTC-AAAAAACCACGTAAGTAAAAGGTCATAAT
* * * * * **
448503 TGTAAATTAGCGGATTGAGAGGTTTG
323 CGTAAATCAACGGACTGAGAGATTCC
* *
448529 TAAAATCCCATAAGTAGACGATTGTGATTGT
1 TAAAATCCCATAAGTAAAAGATTGTGATTGT
448560 GAATTAGCAG
Statistics
Matches: 305, Mismatches: 69, Indels: 9
0.80 0.18 0.02
Matches are distributed among these distances:
346 2 0.01
347 156 0.51
348 147 0.48
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (348 bp):
TAAAATCCCATAAGTAAAAGATTGTGATTGTAAATCAATTGAAGCTCGTAAGAAAGTTCCTTGTT
TTACTAAACAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAAAGAACAAGCTTGAG
CCTCACAAGGGCAATACTACAAAATTAATTCCTCTATCCTCATTCTTTCAAGGTCAATTTTGAGT
TCTTCCTCAACACGCCTATATTAACCATCTCTAGCAACTAACATGCTCTAAAGGACAAAGAGGTC
CATTTTGAGTTCTTCCTCAACACACCTAGATTCAAAAAACCACGTAAGTAAAAGGTCATAATCGT
AAATCAACGGACTGAGAGATTCC
Found at i:448586 original size:54 final size:54
Alignment explanation
Indices: 448528--448814 Score: 211
Period size: 54 Copynumber: 5.3 Consensus size: 54
448518 TGAGAGGTTT
* * * * *
448528 GTAAAATCCCATAAGTAGACGATTGTGATTGTGAATTAGCAGACCACGAGATTC
1 GTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTC
** * ** *** * *
448582 GTAAAAT-TGATTAAGTAGAAGGTCGTGATCACAAATCAGTTCACCACAAGATTT
1 GTAAAATCCCA-TAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTC
*
448636 GTTAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTC
1 GTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTC
* * * * * * *** *
448690 GTAAAATCCCGTAAATAGATGGTCGTCATCGTAAATCA-CCGAATTGCAAGATTC
1 GTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAG-ACCACGAGATTC
* * * * * * *
448744 GTAAAATCCCGTAAGTAGAAAGTAGTCATCGTAAATCAACAAACCTCGAGATTC
1 GTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTC
* *
448798 ATAATAA-CCCGTAAGTA
1 GTAA-AATCCCATAAGTA
448815 AAAGCTCGTG
Statistics
Matches: 180, Mismatches: 48, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
53 3 0.02
54 173 0.96
55 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTC
Found at i:448740 original size:108 final size:108
Alignment explanation
Indices: 448525--448811 Score: 279
Period size: 108 Copynumber: 2.7 Consensus size: 108
448515 GATTGAGAGG
* * * * * *
448525 TTTGTAAAATCCCATAAGTAGACGATTGTGATTGTGAATTAGCAGACCACGAGATTCGTAAAATT
1 TTTGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATC
*** * * ****
448590 GATTAAGTAGAAGGTCGTGATCACAAATCAGTTCACCACAAGA
66 CCGTAAATAGAAGGTCGTCATCACAAATCACCGAACCACAAGA
*
448633 TTTGTTAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATC
1 TTTGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATC
* ** ***
448698 CCGTAAATAGATGGTCGTCATCGTAAATCACCGAATTGCAAGA
66 CCGTAAATAGAAGGTCGTCATCACAAATCACCGAACCACAAGA
* * * * * * * * *
448741 TTCGTAAAATCCCGTAAGTAGAAAGTAGTCATCGTAAATCAACAAACCTCGAGATTCATAATAA-
1 TTTGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAA-AAT
448805 CCCGTAA
65 CCCGTAA
448812 GTAAAAGCTC
Statistics
Matches: 146, Mismatches: 32, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
108 144 0.99
109 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (108 bp):
TTTGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTAAAATC
CCGTAAATAGAAGGTCGTCATCACAAATCACCGAACCACAAGA
Found at i:448833 original size:108 final size:108
Alignment explanation
Indices: 448628--448835 Score: 247
Period size: 108 Copynumber: 1.9 Consensus size: 108
448618 CAGTTCACCA
* * * * * * * *
448628 CAAGATTTGTTAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAGACCACGAGATTCGTA
1 CAAGATTCGTAAAATCCCATAAGTAGAAAGTAGTCATCGTAAATCAACAAACCACGAGATTCATA
* * * *
448693 AAATCCCGTAAATAGATGGTCGTCATCGTAAATCACCGAATTG
66 AAATCCCGTAAATAAAAGCTCGTCATCATAAATCACCGAATTG
* *
448736 CAAGATTCGTAAAATCCCGTAAGTAGAAAGTAGTCATCGTAAATCAACAAACCTCGAGATTCATA
1 CAAGATTCGTAAAATCCCATAAGTAGAAAGTAGTCATCGTAAATCAACAAACCACGAGATTCATA
* * *
448801 ATAA-CCCGTAAGTAAAAGCTCGTGATTATAAATCA
66 A-AATCCCGTAAATAAAAGCTCGTCATCATAAATCA
448836 ACCAAAGCTT
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
108 80 0.98
109 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (108 bp):
CAAGATTCGTAAAATCCCATAAGTAGAAAGTAGTCATCGTAAATCAACAAACCACGAGATTCATA
AAATCCCGTAAATAAAAGCTCGTCATCATAAATCACCGAATTG
Found at i:449181 original size:54 final size:54
Alignment explanation
Indices: 449123--449257 Score: 146
Period size: 54 Copynumber: 2.5 Consensus size: 54
449113 GTCATGATTG
* * **
449123 TAAATTAGCGGACTACGAGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCA
1 TAAATTAGTGGACTACGAGATTCGTAAAATACCATAAGTAGAAGGCCGTGATCA
* * * ** *
449177 TAAATTAATGGACCACGAGATTCATAAAATACGGTAAGTAGAAGGCCGTGATCG
1 TAAATTAGTGGACTACGAGATTCGTAAAATACCATAAGTAGAAGGCCGTGATCA
* *
449231 TAAATCAGTAGACCT-CGAGATTCGTAA
1 TAAATTAGTGGA-CTACGAGATTCGTAA
449258 TATTCCGTTA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
54 64 0.98
55 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (54 bp):
TAAATTAGTGGACTACGAGATTCGTAAAATACCATAAGTAGAAGGCCGTGATCA
Found at i:449531 original size:457 final size:451
Alignment explanation
Indices: 448661--449619 Score: 1229
Period size: 454 Copynumber: 2.1 Consensus size: 451
448651 TAGAAGGTTG
* * * * * * * *
448661 TGATCGTAAATCAGCAGACCACGAGATTCGTAAAATCCCGTAAATAGATGGTCGTCATCGTAAAT
1 TGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCATAAAT
* ** * *** * * * *
448726 CACCGAATTGCAAGATTCGTAAAATCCCGTAAGTAGAAAGTAGTCATCGTAAATCAACAAACCTC
66 TAATGGACCACGAGATTCATAAAATACCGTAAGTAGAAAGCAGTCATCGTAAATCAACAAACCTC
*
448791 GAGATTCATAATAACCCGTAAGTAAAAGCTCGTGATTATAAATCAACCAAAGCTTTTAAGAAAGT
131 GAGATTCATAATAACCCGTAAGTAAAAGCTCATGATTATAAATCAACCAAAGCTTTTAAGAAAGT
* * *
448856 TCCTTGTTTTTCTGAGCAAATCGATCCATTTCAAGCCTCATTTTAGATGTATGGTGAAAAGAACT
196 TCCTTGTTTTTCTGAGCAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAAAGAACT
* * * *
448921 AGCTTCAGCCTTACAAAGGCAATGTAACAAATTTGATTCCTCTATCTTCAATCTTTCAAGGTTAG
261 AGCTTCAGCCTCACAAAGGCAAGGTAACAAATTTAATTCCTCTATCTTC-A-CTTTCAAGGTCAG
* * * **
448986 TTTTGAGTTCTTCCTTAACACGCCTATATTAATCATCTCTAGCATCTAACTTGCTTTGAAGGGCA
324 TTTTGAGTTCTTCCTCAACACGCCTATATTAATCATCCCTAGCATCTAACTTGCTCTGAAAAGCA
** *
449051 GAGAGGTCAGTTTTTAATTCTTCATCGACATGTTTAGATTCGTAGAATCACGTCAGTAGAACGTC
389 GAGAGGTCAGTTTTTAATTCTTCA---ACATGCCTAGATTCGTAGAATCACGTCAATAGAACGTC
449116 A
451 A
* * * *
449117 TGATTGTAAATTAGCGGACTACGAGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCATAAAT
1 TGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCATAAAT
* * * * ** *
449182 TAATGGACCACGAGATTCATAAAATACGGTAAGTAGAAGGCCGTGATCGTAAATCAGTAGACCTC
66 TAATGGACCACGAGATTCATAAAATACCGTAAGTAGAAAGCAGTCATCGTAAATCAACAAACCTC
* ** * * * * *
449247 GAGATTCGTAATATTCCGTTAAGTAAAAGGTCATGATTTTAAATCAACTAAAGCTTTTTAGAGAG
131 GAGATTCATAATAACCCG-TAAGTAAAAGCTCATGATTATAAATCAACCAAAGCTTTTAAGAAAG
* *
449312 TTCCTTGTTTTTCTGTGCAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAGAGAAC
195 TTCCTTGTTTTTCTGAGCAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAAAGAAC
*
449377 TAGCTTCAGCCTCACAAAGGCAAGGTAACAAATTTAATTCCTCTAATC-TC-CTTTTAAGGTCAG
260 TAGCTTCAGCCTCACAAAGGCAAGGTAACAAATTTAATTCCTCT-ATCTTCACTTTCAAGGTCAG
449440 TTTTGAGTTCTTCCTCAACACGCCTATATTAATCATCCCTAGCATCTAACTTGCTCTGAAAAGCA
324 TTTTGAGTTCTTCCTCAACACGCCTATATTAATCATCCCTAGCATCTAACTTGCTCTGAAAAGCA
* * * * *
449505 GAGAGGTCAGTTTTTAGTTCTTCTTCAACATGCCTAGATTTGTATAATTACGTCAATAGAAGGTC
389 GAGAGGTCAGTTTTTA---ATTCTTCAACATGCCTAGATTCGTAGAATCACGTCAATAGAACGTC
*
449570 G
451 A
* *
449571 TGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAGTAGAA
1 TGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCATAAGTAGAA
449620 TGTCATGATT
Statistics
Matches: 431, Mismatches: 67, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
454 161 0.37
456 117 0.27
457 150 0.35
458 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (451 bp):
TGATCGTAAATCAACGGACCACGAGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCATAAAT
TAATGGACCACGAGATTCATAAAATACCGTAAGTAGAAAGCAGTCATCGTAAATCAACAAACCTC
GAGATTCATAATAACCCGTAAGTAAAAGCTCATGATTATAAATCAACCAAAGCTTTTAAGAAAGT
TCCTTGTTTTTCTGAGCAAATCAATCCATTTCAAGCCTCATTTCAGACGTATGGTGAAAAGAACT
AGCTTCAGCCTCACAAAGGCAAGGTAACAAATTTAATTCCTCTATCTTCACTTTCAAGGTCAGTT
TTGAGTTCTTCCTCAACACGCCTATATTAATCATCCCTAGCATCTAACTTGCTCTGAAAAGCAGA
GAGGTCAGTTTTTAATTCTTCAACATGCCTAGATTCGTAGAATCACGTCAATAGAACGTCA
Found at i:449635 original size:54 final size:54
Alignment explanation
Indices: 449561--449903 Score: 332
Period size: 54 Copynumber: 6.4 Consensus size: 54
449551 ATTACGTCAA
*
449561 TAGAAGGTCGTGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAG
1 TAGAAGGTCATGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAG
* * * * *
449615 TAGAATGTCATGATTGTAAATCAATGGA-TAGCTAGATTTGTAAAAT-CTCATAAG
1 TAGAAGGTCATGATCGTAAATCAATGGACCA-CGAGATTCGTAAAATCCT-ATAAG
* * * * * * *
449669 TAAAAGGACATGATCGTAAATTAACGGACCATGAGATTTGTAAAATTTCT-TAAG
1 TAGAAGGTCATGATCGTAAATCAATGGACCACGAGATTCGTAAAA-TCCTATAAG
* * * * *
449723 TAGAAGGTCATGATCATAAATCAGTAGACCGCGAGATTCGTAAAATCCTATAAC
1 TAGAAGGTCATGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAG
* ** * * *
449777 TAAAAGGTTGTGATCGTAAATCAGTGGACCACGAGATTTGTAAAATCCCATAAG
1 TAGAAGGTCATGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAG
* *** *** **
449831 TAGAAGGTCGTGATCGTAAATCAGCAGACTGTGAGATTCGTAAAATCCCGTAAG
1 TAGAAGGTCATGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAG
*
449885 TAGAAGGTCATCATCGTAA
1 TAGAAGGTCATGATCGTAA
449904 GTTAGCAAAC
Statistics
Matches: 236, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
53 6 0.03
54 226 0.96
55 2 0.01
56 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (54 bp):
TAGAAGGTCATGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAG
Found at i:449816 original size:162 final size:162
Alignment explanation
Indices: 449561--449895 Score: 411
Period size: 162 Copynumber: 2.1 Consensus size: 162
449551 ATTACGTCAA
* * * * * *
449561 TAGAAGGTCGTGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAGTAGAATGTCAT
1 TAGAAGGTCATGATCATAAATCAATAGACCACGAGATTCGTAAAATCCTATAACTAAAAGGTCAT
* * * * *
449626 GATTGTAAATCAATGGATAGCTAGATTTGTAAAATCTCATAAGTAAAAGGACATGATCGTAAATT
66 GATCGTAAATCAATGGACAGCGAGATTTGTAAAATCCCATAAGTAAAAGGACATGATCGTAAATC
* * ** *
449691 AACGGACCATGAGATTTGTAAAATTTCTTAAG
131 AACAGACCATGAGATTCGTAAAATCCCGTAAG
* * **
449723 TAGAAGGTCATGATCATAAATCAGTAGACCGCGAGATTCGTAAAATCCTATAACTAAAAGGTTGT
1 TAGAAGGTCATGATCATAAATCAATAGACCACGAGATTCGTAAAATCCTATAACTAAAAGGTCAT
* * * *
449788 GATCGTAAATCAGTGGACCA-CGAGATTTGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAAT
66 GATCGTAAATCAATGGA-CAGCGAGATTTGTAAAATCCCATAAGTAAAAGGACATGATCGTAAAT
* **
449852 CAGCAGACTGTGAGATTCGTAAAATCCCGTAAG
130 CAACAGACCATGAGATTCGTAAAATCCCGTAAG
449885 TAGAAGGTCAT
1 TAGAAGGTCAT
449896 CATCGTAAGT
Statistics
Matches: 145, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
162 144 0.99
163 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (162 bp):
TAGAAGGTCATGATCATAAATCAATAGACCACGAGATTCGTAAAATCCTATAACTAAAAGGTCAT
GATCGTAAATCAATGGACAGCGAGATTTGTAAAATCCCATAAGTAAAAGGACATGATCGTAAATC
AACAGACCATGAGATTCGTAAAATCCCGTAAG
Found at i:449892 original size:108 final size:108
Alignment explanation
Indices: 449564--449903 Score: 387
Period size: 108 Copynumber: 3.1 Consensus size: 108
449554 ACGTCAATAG
* * *
449564 AAGGTCGTGATCGTAAATCAATGGACCACGAGATTCGTAAAATCCTATAAGTAGAATGTCATGAT
1 AAGGTCGTGATCGTAAATCAATGGACCACGAGATTTGTAAAATCCCATAAGTAGAAGGTCATGAT
* * * * *
449629 TGTAAATCAATGGA-TAGCT-AGATTTGTAAAATCTCATAAGTAA
66 CGTAAATCAGTAGACT-G-TGAGATTCGTAAAATCCCATAAGTAA
* * * * * ** *
449672 AAGGACATGATCGTAAATTAACGGACCATGAGATTTGTAAAATTTCTTAAGTAGAAGGTCATGAT
1 AAGGTCGTGATCGTAAATCAATGGACCACGAGATTTGTAAAATCCCATAAGTAGAAGGTCATGAT
* * * * *
449737 CATAAATCAGTAGACCGCGAGATTCGTAAAATCCTATAACTAA
66 CGTAAATCAGTAGACTGTGAGATTCGTAAAATCCCATAAGTAA
* * *
449780 AAGGTTGTGATCGTAAATCAGTGGACCACGAGATTTGTAAAATCCCATAAGTAGAAGGTCGTGAT
1 AAGGTCGTGATCGTAAATCAATGGACCACGAGATTTGTAAAATCCCATAAGTAGAAGGTCATGAT
* * *
449845 CGTAAATCAGCAGACTGTGAGATTCGTAAAATCCCGTAAGTAG
66 CGTAAATCAGTAGACTGTGAGATTCGTAAAATCCCATAAGTAA
* *
449888 AAGGTCATCATCGTAA
1 AAGGTCGTGATCGTAA
449904 GTTAGCAAAC
Statistics
Matches: 187, Mismatches: 43, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
108 187 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (108 bp):
AAGGTCGTGATCGTAAATCAATGGACCACGAGATTTGTAAAATCCCATAAGTAGAAGGTCATGAT
CGTAAATCAGTAGACTGTGAGATTCGTAAAATCCCATAAGTAA
Found at i:449922 original size:54 final size:54
Alignment explanation
Indices: 449810--449946 Score: 177
Period size: 54 Copynumber: 2.5 Consensus size: 54
449800 GTGGACCACG
* * * * * *
449810 AGATTTGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAGCAGACTGTG
1 AGATTCGTAAAATCCCGTAAGTAGAAGGTCATCATCGTAAATCAGCAAACTGTA
* *
449864 AGATTCGTAAAATCCCGTAAGTAGAAGGTCATCATCGTAAGTTAGCAAACT-TCA
1 AGATTCGTAAAATCCCGTAAGTAGAAGGTCATCATCGTAAATCAGCAAACTGT-A
*
449918 AGATTCGTAAAATCCCGTAAGTAAAAGGT
1 AGATTCGTAAAATCCCGTAAGTAGAAGGT
449947 AAAGCTCTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 72 0.99
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (54 bp):
AGATTCGTAAAATCCCGTAAGTAGAAGGTCATCATCGTAAATCAGCAAACTGTA
Found at i:449922 original size:108 final size:108
Alignment explanation
Indices: 449588--449946 Score: 277
Period size: 108 Copynumber: 3.3 Consensus size: 108
449578 AAATCAATGG
* * * * ** *** ** *
449588 ACCACGAGATTCGTAAAATCCTATAAGTAGAATGTCATGATTGTAAATCAATGGATAGCTAGATT
1 ACCACAAGATTTGTAAAATCCCATAAGTAGAAGGTCATGATCATAAATCAGCAGACCGCGAGATT
* * * * * * * **
449653 TGTAAAATCTCATAAGTAAAAGGACATGATCGTAAATTAACGG
66 CGTAAAATCCCATAACTAAAAGGTCATCATCGTAAATCAGCAA
** ** * *
449696 ACCATGAGATTTGTAAAATTTCTTAAGTAGAAGGTCATGATCATAAATCAGTAGACCGCGAGATT
1 ACCACAAGATTTGTAAAATCCCATAAGTAGAAGGTCATGATCATAAATCAGCAGACCGCGAGATT
* ** * ***
449761 CGTAAAATCCTATAACTAAAAGGTTGTGATCGTAAATCAGTGG
66 CGTAAAATCCCATAACTAAAAGGTCATCATCGTAAATCAGCAA
* * * * *
449804 ACCACGAGATTTGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAGCAGACTGTGAGATT
1 ACCACAAGATTTGTAAAATCCCATAAGTAGAAGGTCATGATCATAAATCAGCAGACCGCGAGATT
* * * * *
449869 CGTAAAATCCCGTAAGTAGAAGGTCATCATCGTAAGTTAGCAA
66 CGTAAAATCCCATAACTAAAAGGTCATCATCGTAAATCAGCAA
** * * *
449912 ACTTCAAGATTCGTAAAATCCCGTAAGTAAAAGGT
1 ACCACAAGATTTGTAAAATCCCATAAGTAGAAGGT
449947 AAAGCTCTTT
Statistics
Matches: 200, Mismatches: 51, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
108 200 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (108 bp):
ACCACAAGATTTGTAAAATCCCATAAGTAGAAGGTCATGATCATAAATCAGCAGACCGCGAGATT
CGTAAAATCCCATAACTAAAAGGTCATCATCGTAAATCAGCAA
Found at i:449924 original size:162 final size:162
Alignment explanation
Indices: 449594--449946 Score: 393
Period size: 162 Copynumber: 2.2 Consensus size: 162
449584 ATGGACCACG
* * * * *
449594 AGATTCGTAAAATCCTATAAGTAGAATGTCATGATTGTAAATCAATGGATAGCTAGATTTGTAAA
1 AGATTCGTAAAATCCTATAAGTAAAAGGTCATGATCGTAAATCAATGGACAGCGAGATTTGTAAA
* * * * ** *
449659 ATCTCATAAGTAAAAGGACATGATCGTAAATTAACGGACCATGAGATTTGTAAAATTTCTTAAGT
66 ATCCCATAAGTAAAAGGACATGATCGTAAATCAACAGACCATGAGATTCGTAAAATCCCGTAAGT
* * * *
449724 AGAAGGTCATGATCATAAATCAGTAGACCGCG
131 AGAAGGTCATCATCATAAATCAGCAAACCGCA
* ** *
449756 AGATTCGTAAAATCCTATAACTAAAAGGTTGTGATCGTAAATCAGTGGACCA-CGAGATTTGTAA
1 AGATTCGTAAAATCCTATAAGTAAAAGGTCATGATCGTAAATCAATGGA-CAGCGAGATTTGTAA
* * * * **
449820 AATCCCATAAGTAGAAGGTCGTGATCGTAAATCAGCAGACTGTGAGATTCGTAAAATCCCGTAAG
65 AATCCCATAAGTAAAAGGACATGATCGTAAATCAACAGACCATGAGATTCGTAAAATCCCGTAAG
* * * **
449885 TAGAAGGTCATCATCGTAAGTTAGCAAACTTCA
130 TAGAAGGTCATCATCATAAATCAGCAAACCGCA
**
449918 AGATTCGTAAAATCCCGTAAGTAAAAGGT
1 AGATTCGTAAAATCCTATAAGTAAAAGGT
449947 AAAGCTCTTT
Statistics
Matches: 156, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
162 155 0.99
163 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.27
Consensus pattern (162 bp):
AGATTCGTAAAATCCTATAAGTAAAAGGTCATGATCGTAAATCAATGGACAGCGAGATTTGTAAA
ATCCCATAAGTAAAAGGACATGATCGTAAATCAACAGACCATGAGATTCGTAAAATCCCGTAAGT
AGAAGGTCATCATCATAAATCAGCAAACCGCA
Found at i:450261 original size:54 final size:54
Alignment explanation
Indices: 450179--450600 Score: 267
Period size: 54 Copynumber: 7.8 Consensus size: 54
450169 GAACACGCTT
* * **
450179 AGATTCGTAAAAT-CAAGTCAA-TAGAAGGTTGTGATCGTGAATCAATAAATCACG
1 AGATTCGTAAAATCCCA-T-AAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
* * ** * *** **
450233 AGATTCGTAAAATCTCATAAGTAAAAGGTCATGATCGTAAATTAGTGGATTGCG
1 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
* * * ** *
450287 AGATTCATAAAATCCCGTAAGTAGAAGGTTGTGATCATAAATCAGCGGACCACG
1 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
* * * * * *
450341 AGATTTGTAAAATCCCTTAAGTAGAAGGTCGTGATCGCAAATTAGCAAATCGCG
1 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
* * * *** * *
450395 AGATTCGTAAAATACCATAAGTAGAAGGTTGTGATCTTAAATTAGTGGACCACT
1 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
* * *** * * * * * * ** *
450449 AGATCCATAAAATTTTATAAATAGATGGTCGTGATTGTAAATCAACAGATTGCA
1 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
* * * * *
450503 AGATTAGTAAAATCCTATAAGTAGAAGGTCGTCATCGTAAATCAGCAGAT-ACTG
1 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCAC-G
** * *
450557 AGATTCGTAAAATCCTGTAAGTA-ATAGGTTGTGTTTGTAAATCA
1 AGATTCGTAAAATCCCATAAGTAGA-AGGTTGTGATCGTAAATCA
450601 ACTGAAGCTT
Statistics
Matches: 281, Mismatches: 83, Indels: 8
0.76 0.22 0.02
Matches are distributed among these distances:
53 4 0.01
54 276 0.98
55 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (54 bp):
AGATTCGTAAAATCCCATAAGTAGAAGGTTGTGATCGTAAATCAGCAAATCACG
Found at i:450369 original size:108 final size:108
Alignment explanation
Indices: 450229--450585 Score: 297
Period size: 108 Copynumber: 3.3 Consensus size: 108
450219 ATCAATAAAT
* * *** *
450229 CACGAGATTCGTAAAATCTCATAAGTAAAAGGTCATGATCGTAAATTAGTGGATTGCGAGATTCA
1 CACGAGATTCGTAAAATCCCATAAGTAAAAGGTCATGATCGCAAATTAGCAAATCGCGAGATTCA
* *
450294 TAAAATCCCGTAAGTAGAAGGTTGTGATCATAAATCAGCGGAC
66 TAAAATACCATAAGTAGAAGGTTGTGATCATAAATCAGCGGAC
* * * * *
450337 CACGAGATTTGTAAAATCCCTTAAGTAGAAGGTCGTGATCGCAAATTAGCAAATCGCGAGATTCG
1 CACGAGATTCGTAAAATCCCATAAGTAAAAGGTCATGATCGCAAATTAGCAAATCGCGAGATTCA
* * *
450402 TAAAATACCATAAGTAGAAGGTTGTGATCTTAAATTAGTGGAC
66 TAAAATACCATAAGTAGAAGGTTGTGATCATAAATCAGCGGAC
* * * *** * * * * * * * * * * *
450445 CACTAGATCCATAAAATTTTATAAATAGATGGTCGTGATTGTAAATCAACAGATTGCAAGATT-A
1 CACGAGATTCGTAAAATCCCATAAGTAAAAGGTCATGATCGCAAATTAGCAAATCGCGAGATTCA
* * * *
450509 GTAAAAT-CCTATAAGTAGAAGGTCGTCATCGTAAATCAGCAGA-
66 -TAAAATACC-ATAAGTAGAAGGTTGTGATCATAAATCAGCGGAC
* ** *
450552 TACTGAGATTCGTAAAATCCTGTAAGTAATAGGT
1 CAC-GAGATTCGTAAAATCCCATAAGTAAAAGGT
450586 TGTGTTTGTA
Statistics
Matches: 195, Mismatches: 51, Indels: 6
0.77 0.20 0.02
Matches are distributed among these distances:
107 4 0.02
108 191 0.98
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (108 bp):
CACGAGATTCGTAAAATCCCATAAGTAAAAGGTCATGATCGCAAATTAGCAAATCGCGAGATTCA
TAAAATACCATAAGTAGAAGGTTGTGATCATAAATCAGCGGAC
Found at i:450492 original size:162 final size:161
Alignment explanation
Indices: 450225--450570 Score: 363
Period size: 162 Copynumber: 2.1 Consensus size: 161
450215 GTGAATCAAT
***
450225 AAATCACGAGATTCGTAAAATCTCATAAGTAAAAGGTCATGATCGTAAATTAGTGGATTGCGAGA
1 AAATC-CGAGATTCGTAAAATCTCATAAGTAAAAGGTCATGATCGTAAATTAGTGGACCACGAGA
* * * * * * * *
450290 TTCATAAAATCCCGTAAGTAGAAGGTTGTGATCATAAATCAGCGGACCACGAGATTTGTAAAATC
65 TCCATAAAATCCCATAAATAGAAGGTCGTGATCATAAATCAACAGACCACAAGATTAGTAAAAT-
* *
450355 CCT-TAAGTAGAAGGTCGTGATCGCAAATTAGC
129 CCTATAAGTAGAAGGTCGTCATCGCAAATCAGC
* ** * *
450387 AAATCGCGAGATTCGTAAAATAC-CATAAGTAGAAGGTTGTGATCTTAAATTAGTGGACCACTAG
1 AAATC-CGAGATTCGTAAAAT-CTCATAAGTAAAAGGTCATGATCGTAAATTAGTGGACCACGAG
*** * ** ***
450451 ATCCATAAAATTTTATAAATAGATGGTCGTGATTGTAAATCAACAGATTGCAAGATTAGTAAAAT
64 ATCCATAAAATCCCATAAATAGAAGGTCGTGATCATAAATCAACAGACCACAAGATTAGTAAAAT
*
450516 CCTATAAGTAGAAGGTCGTCATCGTAAATCAGC
129 CCTATAAGTAGAAGGTCGTCATCGCAAATCAGC
* *
450549 AGATACTGAGATTCGTAAAATC
1 AAAT-CCGAGATTCGTAAAATC
450571 CTGTAAGTAA
Statistics
Matches: 150, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
161 4 0.03
162 144 0.96
163 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.27
Consensus pattern (161 bp):
AAATCCGAGATTCGTAAAATCTCATAAGTAAAAGGTCATGATCGTAAATTAGTGGACCACGAGAT
CCATAAAATCCCATAAATAGAAGGTCGTGATCATAAATCAACAGACCACAAGATTAGTAAAATCC
TATAAGTAGAAGGTCGTCATCGCAAATCAGC
Found at i:452018 original size:54 final size:52
Alignment explanation
Indices: 451811--452019 Score: 195
Period size: 54 Copynumber: 3.9 Consensus size: 52
451801 CCTCAACATG
* *** * *
451811 CCTAGATTCGTAAAATCCTGGAATTAGAAGGTTATGATCGTAAATAAGTGGA
1 CCTAGATTCATAAAATCCCATAAGTAGAAGGTTATGATCGTAAATCAGTGGA
* * **
451863 CCATGAGATTCATAAAATACCATAAGTAGAAGGTTATGATCATAAATCAACGGA
1 CC-T-AGATTCATAAAATCCCATAAGTAGAAGGTTATGATCGTAAATCAGTGGA
* * *
451917 CC-ACGGGATTCGTAAAATCTCATAAGTAGAAGGTCATGATCGTAAATCAGTGGA
1 CCTA---GATTCATAAAATCCCATAAGTAGAAGGTTATGATCGTAAATCAGTGGA
* * * *
451971 CTGCTAGATTCATAAAATCCCGTAAGTAAAAGGTAATGATTGTAAATCA
1 C--CTAGATTCATAAAATCCCATAAGTAGAAGGTTATGATCGTAAATCA
452020 ACTGAAGCTT
Statistics
Matches: 126, Mismatches: 23, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
51 1 0.01
52 2 0.02
53 1 0.01
54 120 0.95
56 1 0.01
57 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.26
Consensus pattern (52 bp):
CCTAGATTCATAAAATCCCATAAGTAGAAGGTTATGATCGTAAATCAGTGGA
Found at i:452337 original size:54 final size:54
Alignment explanation
Indices: 452268--452420 Score: 207
Period size: 54 Copynumber: 2.8 Consensus size: 54
452258 CAACATGCCT
* * **
452268 AGATTCATAAAATCACATAAGTAAAAGGTTGTGATCGTAAATCAACGGACAGTA
1 AGATTCATAAAATCACGTAAGTAAAAGGTCGTGATCGTAAATCAAAAGACAGTA
* * * *
452322 AGATTCGTAAAATCACGTAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTC
1 AGATTCATAAAATCACGTAAGTAAAAGGTCGTGATCGTAAATCAAAAGACAGTA
* * *
452376 AGATTCATAAAATCTCGTAAGTAAAATGTCGTGATTGTAAATCAA
1 AGATTCATAAAATCACGTAAGTAAAAGGTCGTGATCGTAAATCAA
452421 TTGAAGCTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (54 bp):
AGATTCATAAAATCACGTAAGTAAAAGGTCGTGATCGTAAATCAAAAGACAGTA
Found at i:452389 original size:454 final size:454
Alignment explanation
Indices: 451358--452419 Score: 1076
Period size: 454 Copynumber: 2.3 Consensus size: 454
451348 ACGGACCGCA
* * * *
451358 AGATCCATAAAATCCCATAAATAAACGGTTGTGATCGTAATTCAAAGGACCACG-AGATTCTTAA
1 AGATTCATAAAAT-CCATAAATAAAAGGTTGTGATCGTAAATCAAAGGACCA-GTAGATTCATAA
** * * * * *
451422 AATCTTGTAAGTAAAAGGTCTTCATTGTAAATCAATAGACTGCGAGATTCGTAAAATCTCATAAG
64 AATCACGTAAGTAGAAGGTCATGATCGTAAATCAAAAGACTGCGAGATTCGTAAAATCTCATAAG
* ** * * * * **
451487 TAGAAGATTTTCATCGTAAATTAGTGGACCATGAGATTCGTAAAATACCGAAAGTAATAGGTCGT
129 TAGAAGGTCATGATCGTAAATCAGTGGACCATGAGATTCATAAAATACCGAAAGTAAAAGGTAAT
* * ** ** * * *
451552 GATAGTAAATTAATTGATTCTGTTCTGGAAGTCTCTTGTTTTATTAACTAGGTCGATCCATTTCA
194 GATAGTAAATCAACTGAAGCTGTTCAAGAAGTCTCTTGTTTTATTAACTAGATCAATCAATTTCA
* * *
451617 AGCCTTATTTCAGACGTATGGTCAAGAGAACTAGCTTTAGCCTCAAAAAGGCAATGTTACAAAAT
259 AGCCTCATTTCAGACGTATGGTCAAGAGAACTAGCTTTAGCCTCAAAAAGGCAATATAACAAAAT
* * * * * * ** *
451682 TGATTCCTCTATCCTCCTTCTTTCATGGTTAGTTTTGAGTTCTTCCTTAATAGGCCTATATTCTT
324 TAATTCCGCTATCCTCC-TCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACACACCTATATTCAT
* * *
451747 AATCTCTAGCATCTAACTTGCTTTGAAGGGCAGTCTGGTCAGTTTTGAGTTCTTCCTCAACATGC
388 AATCTCTAGCATCTAACTTGCTTTGAAAGGCAGACTGGTCAGTTTTGAGTTCATCCTCAACATGC
451812 CT
453 CT
* * * * *
451814 AGATTCGTAAAATCC-TGGAATTAGAAGGTTATGATCGTAAAT-AAGTGGACCA-TGAGATTCAT
1 AGATTCATAAAATCCAT--AAATAAAAGGTTGTGATCGTAAATCAA-AGGACCAGT-AGATTCAT
* * * ** ** *
451876 AAAAT-ACCATAAGTAGAAGGTTATGATCATAAATCAACGGACCACGGGATTCGTAAAATCTCAT
62 AAAATCA-CGTAAGTAGAAGGTCATGATCGTAAATCAAAAGACTGCGAGATTCGTAAAATCTCAT
* *
451940 AAGTAGAAGGTCATGATCGTAAATCAGTGGA-C-TGCTAGATTCATAAAATCCCGTAAGTAAAAG
126 AAGTAGAAGGTCATGATCGTAAATCAGTGGACCATG--AGATTCATAAAATACCGAAAGTAAAAG
* * * * *
452003 GTAATGATTGTAAATCAACTGAAGCTTTTCAA-AGAGT-TCCTTTTTTTTTCTGAGC-AGATCAA
189 GTAATGATAGTAAATCAACTGAAGCTGTTCAAGA-AGTCT-CTTGTTTTAT-T-AACTAGATCAA
* * *
452065 TCAATTTCAAGCCTCATTTCAGACGTATGGTGAAGAGAACTAGCTTCTA-CCTCACAAAGGTAAT
250 TCAATTTCAAGCCTCATTTCAGACGTATGGTCAAGAGAACTAGCTT-TAGCCTCAAAAAGGCAAT
* **
452129 ATAACAAAATTAATTCCGCTATCCT-C-CTTTCAAGGTCAGTTTTGAGTTTTTCCTCAACACATT
314 ATAACAAAATTAATTCCGCTATCCTCCTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACACACC
* * * * *
452192 TATATTCATCATTTCTAGCATTTAACTTG-TTCTGAAAGGCAGAGTGGTCGGTTTTGAGTTCATC
379 TATATTCATAATCTCTAGCATCTAACTTGCTT-TGAAAGGCAGACTGGTCAGTTTTGAGTTCATC
452256 CTCAACATGCCT
443 CTCAACATGCCT
* * *
452268 AGATTCATAAAATCACATAAGTAAAAGGTTGTGATCGTAAATCAACGGA-CAGTAAGATTCGTAA
1 AGATTCATAAAATC-CATAAATAAAAGGTTGTGATCGTAAATCAAAGGACCAGT-AGATTCATAA
* * *
452332 AATCACGTAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTC-AGATTCATAAAATCTCGTAA
64 AATCACGTAAGTAGAAGGTCATGATCGTAAATCAAAAGACTG-CGAGATTCGTAAAATCTCATAA
* * * *
452396 GTAAAATGTCGTGATTGTAAATCA
128 GTAGAAGGTCATGATCGTAAATCA
452420 ATTGAAGCTT
Statistics
Matches: 490, Mismatches: 96, Indels: 42
0.78 0.15 0.07
Matches are distributed among these distances:
453 4 0.01
454 211 0.43
455 12 0.02
456 176 0.36
457 83 0.17
458 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (454 bp):
AGATTCATAAAATCCATAAATAAAAGGTTGTGATCGTAAATCAAAGGACCAGTAGATTCATAAAA
TCACGTAAGTAGAAGGTCATGATCGTAAATCAAAAGACTGCGAGATTCGTAAAATCTCATAAGTA
GAAGGTCATGATCGTAAATCAGTGGACCATGAGATTCATAAAATACCGAAAGTAAAAGGTAATGA
TAGTAAATCAACTGAAGCTGTTCAAGAAGTCTCTTGTTTTATTAACTAGATCAATCAATTTCAAG
CCTCATTTCAGACGTATGGTCAAGAGAACTAGCTTTAGCCTCAAAAAGGCAATATAACAAAATTA
ATTCCGCTATCCTCCTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACACACCTATATTCATAAT
CTCTAGCATCTAACTTGCTTTGAAAGGCAGACTGGTCAGTTTTGAGTTCATCCTCAACATGCCT
Found at i:452785 original size:397 final size:397
Alignment explanation
Indices: 451930--452816 Score: 1005
Period size: 397 Copynumber: 2.2 Consensus size: 397
451920 CGGGATTCGT
* * ** **
451930 AAAATCTCATAAGTAGAAGGTCATGATCGTAAATCAGTGGACTGCTAGATTCATAAAATCCCGTA
1 AAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGAAGACCAC-AGATTCATAAAATCCCGTA
* * *
451995 AGTAAAAGGTAATGATTGTAAATCAACTGAAGCTTTTCAAAGAGTTCCTTTTTTTTTCTGAGCAG
65 AGTAAAAGGTAGTGATTGTAAATCAACTGAAGCTTTTCAAAAAGTTAC--TTTTTTTCTGAGCAG
* * *
452060 ATCAATCAATTTCAAGCCTCATTTCAGACGTATGGTGAAGAGAACTAGCTTCTACCTCACAAAGG
128 ATCAATCAATTTCAAGCCTCATTACAGACCTATGGTGAAGAAAACTAGCTTCTACCTCACAAAGG
* * * *
452125 TAATATAACAAAATTAATTCCGCTATCCTCCTTTCAAGGTCAGTTTTGAGTTTTTCCTCAACACA
193 CAATATAACAAAATTAATTCCGCTATCATCCTTTCAAGGTCAGTTTTGAATTATTCCTCAACACA
** * * * * * * *
452190 TTTATATTCATCATTTCTAGCATTTAACTTGTTCTGAAAGGCAGAGTGGTCGGTTTTGAGTTCAT
258 CCTATATTCATCATCTCTAACATCTAACTTGTTCTGAAAGGCAAAGAGGTCGATTTTAAGTTCAT
* * * * *
452255 CCTCAACATGCCTAGATTCATAAAATCACATAAGTAAAAGGTTGTGATCGTAAATCAACGGACAG
323 CCTCAACACGCCTAGATCCATAAAATCACATAAGTAAAAGGTCGTAATCGTAAATCAACAGACAG
* **
452320 TAAGATTCGT
388 CAAGATTCAC
* * ** *
452330 AAAATCACGTAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTCAGATTCATAAAATCTCGTA
1 AAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGAAGAC-CACAGATTCATAAAATCCCGTA
* * * * *
452395 AGTAAAATGTCGTGATTGTAAATCAATTGAAGCTTTTTAAAAAGTTAC-TTTTTT-T-AGTAGAT
65 AGTAAAAGGTAGTGATTGTAAATCAACTGAAGCTTTTCAAAAAGTTACTTTTTTTCTGAGCAGAT
** *
452457 TGATCCATTTCAAGCCTCATTACAGACCTATGGTGAAGAAAACTAGCTTC-AGCCTCACAAAGGC
130 CAATCAATTTCAAGCCTCATTACAGACCTATGGTGAAGAAAACTAGCTTCTA-CCTCACAAAGGC
* * *
452521 AATTTAACAAAATTAATTCCTCTATCATCCATCTTTCATGGTCAGTTTTGAATTCATT-CTCAAC
194 AATATAACAAAATTAATTCCGCTATCAT-C--CTTTCAAGGTCAGTTTTGAATT-ATTCCTCAAC
* *
452585 ACCCCTATATTCATCATCTCTAACATCTAACTTGCTT-T-AAAGGCAAAGAGGTTGATTTTAAGT
255 ACACCTATATTCATCATCTCTAACATCTAACTTG-TTCTGAAAGGCAAAGAGGTCGATTTTAAGT
* * * * * * * *
452648 TCTTCTTCAACACGTCTAGATCCGTAAAATCATATAAGTATAATGTCGTAATCGTAAATCAGCAG
319 TCATCCTCAACACGCCTAGATCCATAAAATCACATAAGTAAAAGGTCGTAATCGTAAATCAACAG
* *
452713 ACTGCAAGATTTAC
384 ACAGCAAGATTCAC
* * * * *
452727 AAAATCTCGTAAGTAGAAGGTTGTGATTGTAAATCAGCAGACCACAAGATCCATAAAATCCCTTA
1 AAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGAAGACCAC-AGATTCATAAAATCCCGTA
* * *
452792 AGTAGAAGGTTGTGATCGTAAATCA
65 AGTAAAAGGTAGTGATTGTAAATCA
452817 GTGGACCGAT
Statistics
Matches: 406, Mismatches: 73, Indels: 19
0.82 0.15 0.04
Matches are distributed among these distances:
394 1 0.00
395 86 0.21
396 3 0.01
397 161 0.40
398 55 0.14
399 4 0.01
400 95 0.23
401 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (397 bp):
AAAATCTCGTAAGTAGAAGGTCGTGATCGTAAATCAGAAGACCACAGATTCATAAAATCCCGTAA
GTAAAAGGTAGTGATTGTAAATCAACTGAAGCTTTTCAAAAAGTTACTTTTTTTCTGAGCAGATC
AATCAATTTCAAGCCTCATTACAGACCTATGGTGAAGAAAACTAGCTTCTACCTCACAAAGGCAA
TATAACAAAATTAATTCCGCTATCATCCTTTCAAGGTCAGTTTTGAATTATTCCTCAACACACCT
ATATTCATCATCTCTAACATCTAACTTGTTCTGAAAGGCAAAGAGGTCGATTTTAAGTTCATCCT
CAACACGCCTAGATCCATAAAATCACATAAGTAAAAGGTCGTAATCGTAAATCAACAGACAGCAA
GATTCAC
Found at i:452931 original size:54 final size:54
Alignment explanation
Indices: 452682--452931 Score: 200
Period size: 54 Copynumber: 4.6 Consensus size: 54
452672 TAAAATCATA
* * * * * *
452682 TAAGTATAATGTCGTAATCGTAAATCAGCAGACTGCAAGATTTACAAAATCTCG
1 TAAGTAGAAGGTCGTGATCGTAAATCAGCAGACCGCAAGATTCACAAAATCTCT
* * * * * *
452736 TAAGTAGAAGGTTGTGATTGTAAATCAGCAGACCACAAGATCCATAAAATCCCT
1 TAAGTAGAAGGTCGTGATCGTAAATCAGCAGACCGCAAGATTCACAAAATCTCT
* ** **
452790 TAAGTAGAAGGTTGTGATCGTAAATCAGTGGACCG-ATAGATTCGTAAAATC-CT
1 TAAGTAGAAGGTCGTGATCGTAAATCAGCAGACCGCA-AGATTCACAAAATCTCT
* * * * * ** *
452843 ATAAGTAAAAGGTTC-TCATTGTAAATTAGTAGACCGTGAGATTCGCAAAATCTCT
1 -TAAGTAGAAGG-TCGTGATCGTAAATCAGCAGACCGCAAGATTCACAAAATCTCT
* * *
452898 TAAGTAGAAGGTCATTATCGTAAGTCAGCAGACC
1 TAAGTAGAAGGTCGTGATCGTAAATCAGCAGACC
452932 ATGTGATTTG
Statistics
Matches: 158, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
53 5 0.03
54 150 0.95
55 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (54 bp):
TAAGTAGAAGGTCGTGATCGTAAATCAGCAGACCGCAAGATTCACAAAATCTCT
Found at i:454046 original size:54 final size:54
Alignment explanation
Indices: 453981--454263 Score: 230
Period size: 54 Copynumber: 5.2 Consensus size: 54
453971 CAACACGTCT
* * * * *
453981 AGATTCGTAAAATCACGTAAGTAGTAGGTCGTGATCATAAATTAGTGGACCGCG
1 AGATTCTTAAAATCACGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
* * * ** * * *
454035 AGATTCTTAAAAACTA-ATAAGTAAAAGGTCGTGATTGTAAATGAACAGACCGTG
1 AGATTCTTAAAATC-ACGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
* * * * * ***
454089 AGATTTTTAAAACCATGTAAGTAGAAGGTCGTGATCATAAATCAGTGGATCACA
1 AGATTCTTAAAATCACGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
* * * * * *
454143 AGATTCATAGAATC-CTGTAAATAGTAGGTTGTGATCATAAATCAGCAGACCGTG
1 AGATTCTTAAAATCAC-GTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
* * * *
454197 ATATT-TGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATCAGCGAACCGTG
1 AGATTCT-TAAAATCACGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
*
454251 AGATTCATAAAAT
1 AGATTCTTAAAAT
454264 TTCAGATGTA
Statistics
Matches: 172, Mismatches: 51, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
53 1 0.01
54 169 0.98
55 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (54 bp):
AGATTCTTAAAATCACGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
Found at i:454285 original size:108 final size:107
Alignment explanation
Indices: 453981--454296 Score: 319
Period size: 108 Copynumber: 2.9 Consensus size: 107
453971 CAACACGTCT
* * * * *
453981 AGATTCGTAAAATCACGTAAGTAGTAGGTCGTGATCATAAATTAGTGGACCGCGAGATTCTTAAA
1 AGATTTGTAAAATCCCGTAAGTAGAAGGTCGTGATCATAAATCAGTGGACCGCGAGATTCAT-AA
* * * *
454046 AACTAATAAGTAAAAGGTCGTGATTGTAAATGAACAGACCGTG
65 AATTCAGAAGTAAAAGGTCGTGATTGTAAATCAACAGACCGTG
* * * * * *
454089 AGATTTTTAAAA-CCATGTAAGTAGAAGGTCGTGATCATAAATCAGTGGATCACAAGATTCATAG
1 AGATTTGTAAAATCC-CGTAAGTAGAAGGTCGTGATCATAAATCAGTGGACCGCGAGATTCATAA
* * * ** * ** *
454153 AATCCTGTAAATAGTAGGTTGTGATCATAAATCAGCAGACCGTG
65 AATTCAG-AAGTAAAAGGTCGTGATTGTAAATCAACAGACCGTG
* * * * *
454197 ATATTTGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATCAGCGAACCGTGAGATTCATAAA
1 AGATTTGTAAAATCCCGTAAGTAGAAGGTCGTGATCATAAATCAGTGGACCGCGAGATTCATAAA
*
454262 ATTTCAGATGTAAAAGGTCGTGATTGTAAATCAAC
66 A-TTCAGAAGTAAAAGGTCGTGATTGTAAATCAAC
454297 TAAAGCTTTT
Statistics
Matches: 159, Mismatches: 45, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
107 4 0.03
108 150 0.94
109 5 0.03
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (107 bp):
AGATTTGTAAAATCCCGTAAGTAGAAGGTCGTGATCATAAATCAGTGGACCGCGAGATTCATAAA
ATTCAGAAGTAAAAGGTCGTGATTGTAAATCAACAGACCGTG
Found at i:454679 original size:563 final size:562
Alignment explanation
Indices: 453679--454696 Score: 1239
Period size: 563 Copynumber: 1.8 Consensus size: 562
453669 CGTAATTTAA
*
453679 CGAACCGTAAGATTCTTAAAATCCAGAAAGTAAAAGATCGTGATTGTAAATAAACTAAAAATTTT
1 CGAACCGTAAGATTCATAAAATCCAGAAAGTAAAAGATCGTGATTGTAAATAAACTAAAAATTTT
* * ** * * *
453744 AAGAAAGTTCTGTGTTTTTCTAAGCAGATCGATTTATTTGAAGCCTCATTTCAGATGTATGGTAA
66 AAGAAAATTCTGTATTTTTCTAAGCAGATCGATCCATTTCAAGCATCATTTCAAATGTATGGTAA
453809 TGAGAACTAGCTCAAGCATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTATTTC
131 TGAGAACTAGCTCAAGCATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTATTTC
* * * * * *
453874 AAAGTTAGTTTTGAGTTCTTCCTCAACACGCCTATATTCATCACTCTACCTTCTAATTTGCTCTA
196 AAAGTTAGTTTTGAGTTCTTCCTCAACACACATATATTCATCAATCTACCATCTAACTTACTCTA
** * **
453939 AAGGGTAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTCTAGATTCGTAAAATCACGTAAGTA
261 AACAGCAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTCTAGATTCGTAAAAGAACGTAAGTA
* * ** * * * *
454004 GTAGGTCGTGATCATAAATTAGTGGACCGCGAGATTCTTAAAAACTAATAAGTAAAAGGTCGTGA
326 GAAAGTCGTGATCATAAATTAACGAACCACGAGATTCGTAAAAACTAATAAGTAAAAGGTCATGA
* * ** *
454069 TTGTAAATGAACAGACCGTGAGATTTTTAAAACCATGTAAGTAGAAGGTCGTGATCATAAATCAG
391 TTGTAAATCAACAAACCG-GAGATTCATAAAACCATGTAACTAGAAGGTCGTGATCATAAATCAG
454134 TGGATCACAAGATTCATAGAATCCTGTAAATAGTAGGTTGTGATCATAAATCAGCAGACCGTGAT
455 TGGATCACAAGATTCATAGAATCCTGTAAATAGTAGGTTGTGATCATAAATCAGCAGACCGTGAT
454199 ATTTGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATCAG
520 ATTTGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATCAG
* * * * * **
454242 CGAACCGTGAGATTCATAAAATTTCAG-ATGTAAAAGGTCGTGATTGTAAATCAACTAAAGCTTT
1 CGAACCGTAAGATTCATAAAA-TCCAGAAAGTAAAAGATCGTGATTGTAAATAAACTAAAAATTT
* * * *
454306 TTAGAAAATTCAT-TATTTTTCTTAGCAGGTTGATCCATTTCAAGCATCATTTCAAATGTATGGT
65 TAAGAAAATTC-TGTATTTTTCTAAGCAGATCGATCCATTTCAAGCATCATTTCAAATGTATGGT
* * * * *
454370 GAA-GAGAACTAGCTTC-AGTC-TCACAAAGGTAATGTATCAAAATTGATTCCTCTATCCTCATT
129 -AATGAGAACTAGC-TCAAG-CATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATT
* * * * *
454432 CTTTCAAGGTCT-GTTTTGAGTTCTTCCTCATCACACATGTATTCATCATATCTAGCATCTAACT
191 ATTTCAAAGT-TAGTTTTGAGTTCTTCCTCAACACACATATATTCATCA-ATCTACCATCTAACT
* * * * *
454496 TACTCTGAACAGCAGAGAGGTTAGTTTTGAGTTCTTCTTCAACAC-TCTTAGATTCTTAAAGGAA
254 TACTCTAAACAGCAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTC-TAGATTCGTAAAAGAA
* * * * *
454560 CGT-AGTAGAAATTCGTGATCGTAAATTAACGAACCACGTGATTCGTAAAATCCT-ATAAGTAGA
318 CGTAAGTAGAAAGTCGTGATCATAAATTAACGAACCACGAGATTCGTAAAA-ACTAATAAGTAAA
* * * *
454623 AGGTCATGATTGTAAATCAGCGAAACAC-GAGATTCATAAAA-TATTGTAACTAGAAGGTTGTGG
382 AGGTCATGATTGTAAATCAAC-AAAC-CGGAGATTCATAAAACCA-TGTAACTAGAAGGTCGTGA
454686 TCATAAATCAG
444 TCATAAATCAG
454697 CGGACCGTGA
Statistics
Matches: 376, Mismatches: 67, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
562 1 0.00
563 294 0.78
564 80 0.21
565 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (562 bp):
CGAACCGTAAGATTCATAAAATCCAGAAAGTAAAAGATCGTGATTGTAAATAAACTAAAAATTTT
AAGAAAATTCTGTATTTTTCTAAGCAGATCGATCCATTTCAAGCATCATTTCAAATGTATGGTAA
TGAGAACTAGCTCAAGCATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTATTTC
AAAGTTAGTTTTGAGTTCTTCCTCAACACACATATATTCATCAATCTACCATCTAACTTACTCTA
AACAGCAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTCTAGATTCGTAAAAGAACGTAAGTA
GAAAGTCGTGATCATAAATTAACGAACCACGAGATTCGTAAAAACTAATAAGTAAAAGGTCATGA
TTGTAAATCAACAAACCGGAGATTCATAAAACCATGTAACTAGAAGGTCGTGATCATAAATCAGT
GGATCACAAGATTCATAGAATCCTGTAAATAGTAGGTTGTGATCATAAATCAGCAGACCGTGATA
TTTGTAAAATCCCGTAAGTAGAAAGTCGTGATCATAAATCAG
Found at i:454743 original size:563 final size:562
Alignment explanation
Indices: 453679--454843 Score: 1220
Period size: 563 Copynumber: 2.1 Consensus size: 562
453669 CGTAATTTAA
* * * *
453679 CGAACCGTAAGATTCTTAAAA-TCCAGAAAGTAAAAGATCGTGATTGTAAATAAACTAAAAATTT
1 CGAACCGTGAGATTCATAAAATTTCAG-AAGTAAAAGGTCGTGATTGTAAATAAACTAAAAATTT
* * ** * * *
453743 TAAGAAAGTTCTGTGTTTTTCTAAGCAGATCGATTTATTTGAAGCCTCATTTCAGATGTATGGTA
65 TAAGAAAATTCTGTATTTTTCTAAGCAGATCGATCCATTTCAAGCATCATTTCAAATGTATGGTA
453808 ATGAGAACTAGCTCAAGCATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTATTT
130 ATGAGAACTAGCTCAAGCATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTATTT
* * * * * *
453873 CAAAGTTAGTTTTGAGTTCTTCCTCAACACGCCTATATTCATCACTCTACCTTCTAATTTGCTCT
195 CAAAGTTAGTTTTGAGTTCTTCCTCAACACACATATATTCATCAATCTACCATCTAACTTACTCT
** * **
453938 AAAGGGTAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTCTAGATTCGTAAAATCACGTAAGT
260 AAACAGCAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTCTAGATTCGTAAAAGAACGTAAGT
* * ** * * * *
454003 AGTAGGTCGTGATCATAAATTAGTGGACCGCGAGATTCTTAAAAACTAATAAGTAAAAGGTCGTG
325 AGAAAGTCGTGATCATAAATTAACGAACCACGAGATTCGTAAAAACTAATAAGTAAAAGGTCATG
* * ** *
454068 ATTGTAAATGAACAGACCGTGAGATTTTTAAAACCATGTAAGTAGAAGGTCGTGATCATAAATCA
390 ATTGTAAATCAACAAACCG-GAGATTCATAAAACCATGTAACTAGAAGGTCGTGATCATAAATCA
* * * ** ** * **
454133 GTGGATCACAAGATTCATAGAATCCTGTAAATAGTAGGTTGTGATCATAAATCAGCAGACCGTGA
454 GCGGACCACAAGATTCATAAAATCCCATAAATAAAAAGTCATGATCATAAATCAGCAGACCGTGA
* ** *
454198 TATTTGTAAAATCCCGTAAGTAGAAA-GTCGTGATCATAAATCAG
519 GATTCATAAAATCCCGTAAGTA-AAAGGTCGTCATCATAAATCAG
* * **
454242 CGAACCGTGAGATTCATAAAATTTCAGATGTAAAAGGTCGTGATTGTAAATCAACTAAAGCTTTT
1 CGAACCGTGAGATTCATAAAATTTCAGAAGTAAAAGGTCGTGATTGTAAATAAACTAAAAATTTT
* * * *
454307 TAGAAAATTCAT-TATTTTTCTTAGCAGGTTGATCCATTTCAAGCATCATTTCAAATGTATGGTG
66 AAGAAAATTC-TGTATTTTTCTAAGCAGATCGATCCATTTCAAGCATCATTTCAAATGTATGGT-
* * * * * *
454371 AA-GAGAACTAGCTTC-AGTC-TCACAAAGGTAATGTATCAAAATTGATTCCTCTATCCTCATTC
129 AATGAGAACTAGC-TCAAG-CATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTA
* * * *
454433 TTTCAAGGTCT-GTTTTGAGTTCTTCCTCATCACACATGTATTCATCATATCTAGCATCTAACTT
192 TTTCAAAGT-TAGTTTTGAGTTCTTCCTCAACACACATATATTCATCA-ATCTACCATCTAACTT
* * * * *
454497 ACTCTGAACAGCAGAGAGGTTAGTTTTGAGTTCTTCTTCAACAC-TCTTAGATTCTTAAAGGAAC
255 ACTCTAAACAGCAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTC-TAGATTCGTAAAAGAAC
* * * * *
454561 GT-AGTAGAAATTCGTGATCGTAAATTAACGAACCACGTGATTCGTAAAATCCT-ATAAGTAGAA
319 GTAAGTAGAAAGTCGTGATCATAAATTAACGAACCACGAGATTCGTAAAA-ACTAATAAGTAAAA
* * * *
454624 GGTCATGATTGTAAATCAGCGAAACAC-GAGATTCATAAAA-TATTGTAACTAGAAGGTTGTGGT
383 GGTCATGATTGTAAATCAAC-AAAC-CGGAGATTCATAAAACCA-TGTAACTAGAAGGTCGTGAT
*** * ** * **
454687 CATAAATCAGCGGACCGTGATATTTGTAAAATCCCATAAGTAAAAAGTCATGATCATAAATTTGC
445 CATAAATCAGCGGACCACAAGATTCATAAAATCCCATAAATAAAAAGTCATGATCATAAATCAGC
* * * * * *
454752 GGATCGTGAGATTCATAAAGTCCCGTATGTAAAAGGTCGTCATCGTAAATGAG
510 AGACCGTGAGATTCATAAAATCCCGTAAGTAAAAGGTCGTCATCATAAATCAG
* * * *
454805 CTAACCGCGAGATTCATAAAATCTCATAAGTAAAAGGTC
1 CGAACCGTGAGATTCATAAAATTTCAGAAGTAAAAGGTC
454844 ATCATCATAA
Statistics
Matches: 488, Mismatches: 101, Indels: 26
0.79 0.16 0.04
Matches are distributed among these distances:
562 4 0.01
563 403 0.83
564 80 0.16
565 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (562 bp):
CGAACCGTGAGATTCATAAAATTTCAGAAGTAAAAGGTCGTGATTGTAAATAAACTAAAAATTTT
AAGAAAATTCTGTATTTTTCTAAGCAGATCGATCCATTTCAAGCATCATTTCAAATGTATGGTAA
TGAGAACTAGCTCAAGCATAACAAAGGCAATGTAACAAAATTGATTCCTCAACCCTCATTATTTC
AAAGTTAGTTTTGAGTTCTTCCTCAACACACATATATTCATCAATCTACCATCTAACTTACTCTA
AACAGCAGAGAGGTCAGTTTTGAGTTCTTCCTCAACACGTCTAGATTCGTAAAAGAACGTAAGTA
GAAAGTCGTGATCATAAATTAACGAACCACGAGATTCGTAAAAACTAATAAGTAAAAGGTCATGA
TTGTAAATCAACAAACCGGAGATTCATAAAACCATGTAACTAGAAGGTCGTGATCATAAATCAGC
GGACCACAAGATTCATAAAATCCCATAAATAAAAAGTCATGATCATAAATCAGCAGACCGTGAGA
TTCATAAAATCCCGTAAGTAAAAGGTCGTCATCATAAATCAG
Found at i:454744 original size:54 final size:54
Alignment explanation
Indices: 454686--454881 Score: 196
Period size: 54 Copynumber: 3.6 Consensus size: 54
454676 AAGGTTGTGG
* * ** * *
454686 TCATAAATCAGCGGACCGTGATATTTGTAAAATCCCATAAGTAAAAAGTCATGA
1 TCATAAATTAGCGGACCGTGAGATTCATAAAATCCCATAAGTAAAAGGTCATCA
* * * * * *
454740 TCATAAATTTGCGGATCGTGAGATTCATAAAGTCCCGTATGTAAAAGGTCGTCA
1 TCATAAATTAGCGGACCGTGAGATTCATAAAATCCCATAAGTAAAAGGTCATCA
* * ** * *
454794 TCGTAAATGAGCTAACCGCGAGATTCATAAAATCTCATAAGTAAAAGGTCATCA
1 TCATAAATTAGCGGACCGTGAGATTCATAAAATCCCATAAGTAAAAGGTCATCA
* *
454848 TCATAAATTAGTGGACCGTGCA-ATTCGTAAAATC
1 TCATAAATTAGCGGACCGTG-AGATTCATAAAATC
454882 AACTATAGCT
Statistics
Matches: 110, Mismatches: 31, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
54 109 0.99
55 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.27
Consensus pattern (54 bp):
TCATAAATTAGCGGACCGTGAGATTCATAAAATCCCATAAGTAAAAGGTCATCA
Found at i:455342 original size:54 final size:54
Alignment explanation
Indices: 455224--455343 Score: 127
Period size: 54 Copynumber: 2.2 Consensus size: 54
455214 GTGAGATTCA
* *
455224 TAAATCAGC-GAACCCTGAGATTCGTAAAATCTCATAAGAAGAAGGTCATCATCG
1 TAAATCAGCAG-ACCCTGAGATTCGTAAAATCCCATAAGAAGAAGGTCATCATCC
* * * * * * *
455278 TGAATTAGCAGACCGTGATATTTGTAAAATCCCATAACTAA-AAGGTCATTATCC
1 TAAATCAGCAGACCCTGAGATTCGTAAAATCCCATAA-GAAGAAGGTCATCATCC
455332 TAAATCAGCAGA
1 TAAATCAGCAGA
455344 TTGCTAGATC
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
54 50 0.94
55 3 0.06
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (54 bp):
TAAATCAGCAGACCCTGAGATTCGTAAAATCCCATAAGAAGAAGGTCATCATCC
Found at i:455636 original size:54 final size:54
Alignment explanation
Indices: 455533--455638 Score: 131
Period size: 54 Copynumber: 2.0 Consensus size: 54
455523 TTAGCCTCAC
* * * * *
455533 AAAATCCCTTAAGTAAATGATCGTCATCGTAAATCAGCAAACTACGAGATTCAT
1 AAAATCCCATAAGTAAAAGATCATCATCGTAAATCAACAAACCACGAGATTCAT
* * **
455587 AAAATCTCATAAGTAAAAGATCATGATCGTAAATCAACAAACCGTGAGATTC
1 AAAATCCCATAAGTAAAAGATCATCATCGTAAATCAACAAACCACGAGATTC
455639 GAAAAACCCA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (54 bp):
AAAATCCCATAAGTAAAAGATCATCATCGTAAATCAACAAACCACGAGATTCAT
Found at i:456046 original size:54 final size:54
Alignment explanation
Indices: 455927--456063 Score: 148
Period size: 54 Copynumber: 2.5 Consensus size: 54
455917 CAACATGTAT
* * **
455927 AGATTCATAAAATCACGTAAGTAGAAAGTCGTGATCGTAAATTAACGGGCCACA
1 AGATTCATAAAATCACGTAAGTAGAAGGTCGTAATCGTAAATTAACGGAACACA
* * * * ***
455981 AGATTCTTAAAAACACGTAAGTAGAAGGTCGTAATTGTAAATTAGCGGAACGTG
1 AGATTCATAAAATCACGTAAGTAGAAGGTCGTAATCGTAAATTAACGGAACACA
* * *
456035 ATATTCATAAAATCCCGTTAGTAGAAGGT
1 AGATTCATAAAATCACGTAAGTAGAAGGT
456064 TGTTATCATA
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (54 bp):
AGATTCATAAAATCACGTAAGTAGAAGGTCGTAATCGTAAATTAACGGAACACA
Found at i:456550 original size:54 final size:54
Alignment explanation
Indices: 456438--456614 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 54
456428 CAACACGCCT
* * * * * ***
456438 AGATTCGTAAAATCACGTAAGTAA-AAGGTCGTGATCATAAATTAGTAGATCACA
1 AGATTCGTAATATCCCGTAA-AAAGAAGGTCGTGATCGTAAATTAGTAGACCGTG
* * *
456492 AGATTTGTAATATCCCGTAAATAGGAGGTCGTGATCGTAAATTAGTAGACCGTG
1 AGATTCGTAATATCCCGTAAAAAGAAGGTCGTGATCGTAAATTAGTAGACCGTG
* * ** *
456546 AGATTCGTAAGATCCTGTAAAAAGAAGGTATTGATCGTAAATCAGTAGACCGTG
1 AGATTCGTAATATCCCGTAAAAAGAAGGTCGTGATCGTAAATTAGTAGACCGTG
456600 AGATTCGT-ATATCCC
1 AGATTCGTAATATCCC
456615 CATATGTATA
Statistics
Matches: 101, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 6 0.06
54 95 0.94
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (54 bp):
AGATTCGTAATATCCCGTAAAAAGAAGGTCGTGATCGTAAATTAGTAGACCGTG
Found at i:456635 original size:54 final size:54
Alignment explanation
Indices: 456462--456643 Score: 150
Period size: 54 Copynumber: 3.4 Consensus size: 54
456452 ACGTAAGTAA
* * * *** * * * *
456462 AAGGTCGTGATCATAAATTAGTAGATCACAAGATTTGTAATATCCCGTAAATAG
1 AAGGTCGTGATCGTAAATCAGTAGACCGTGAGATTCGTAAGATCCCATAAAAAG
* * **
456516 GAGGTCGTGATCGTAAATTAGTAGACCGTGAGATTCGTAAGATCCTGTAAAAAG
1 AAGGTCGTGATCGTAAATCAGTAGACCGTGAGATTCGTAAGATCCCATAAAAAG
** * *** *
456570 AAGGTATTGATCGTAAATCAGTAGACCGTGAGATTCGT-ATATCCCCATATGTAT
1 AAGGTCGTGATCGTAAATCAGTAGACCGTGAGATTCGTAAGAT-CCCATAAAAAG
*
456624 AAGGTCGTGATCATAAATCA
1 AAGGTCGTGATCGTAAATCA
456644 AAATTTCGTG
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
53 3 0.03
54 100 0.97
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (54 bp):
AAGGTCGTGATCGTAAATCAGTAGACCGTGAGATTCGTAAGATCCCATAAAAAG
Found at i:456696 original size:511 final size:507
Alignment explanation
Indices: 455669--456699 Score: 1134
Period size: 511 Copynumber: 2.0 Consensus size: 507
455659 GGTCGTGATT
* * * *
455669 GTAAATAAACTGAAACTTTTTAAAAAGTTCCTTATTTTTCTGAATAGATTGATCAATTTGAAGCC
1 GTAAATCAACTGAAACTTTTCAAAAAGTTCCTTATTTTTCTGAACAGATCGATCAATTTGAAGCC
*
455734 TCATTTCAGATATGTAAAGATGAGAACTAGCTTCAGCCTCACAAAGGCATTGTAACAAAAATCAT
66 TCATTTCAGATATGTAAAGA-GAGAACTAGCTTCAGCCTCACAAAGGCAATGTAACAAAAATCAT
* * * *
455799 TCCTCTACCCTCCTTTTTTCAATGTCAGTTTCGAGTTCTTCCTCAACACGTCTATATTCATCATC
130 TCCTCTACCCTCCTTTTTTAAAGGTCAGTTTCGAGTTCTTCCTCAAAACGTCTATATTCATCATA
** * * *
455864 TATAGGTTCTAACTTGCTCTAAAAGGTACAAAGGTCAGTTTTGAGTTCTTCCTCAACATGTATAG
195 TATAGCATCTAACTTGCTCTAAAAGGTACAAAGGTCAGTTTTAAGTTCTTCCTCAACACGCATAG
* * *
455929 ATTCATAAAATCACGTAAGTAGAAAGTCGTGATCGTAAATTAACGGGCCACAAGATTCTTAAAAA
260 ATTCATAAAATCACGTAAGTAGAAAGTCGTGATCATAAATTAACAGACCACAAGATTCTTAAAAA
* * * * * **
455994 CACGTAAGTAGAAGGTCGTAATTGTAAATTAGCGGAACGTGATATTCATAAAATCCCGTTAGTAG
325 CACGTAAATAGAAGGTCGTAATCGTAAATTAGCAGAACGTGAGATTCATAAAATCCCGTAAAAAG
* * * **
456059 AAGGTTGTTATCATAAATCAGTGGACCATGAGATTTGTAAAATCGTATAAGTAAAAGGTCGTCAT
390 AAGGTTGTGATCATAAATCAGTAGACCATGAGATTCGTAAAATCCCATAAGTAAAAGGTCGTCAT
**** * * *
456124 CATAAATTGGTAGATCGTGAGATTCATAATTTCACGTAAGTAATAAGTCGTATTT
455 CATAAATCAAAAGATCGTGAGATTCAGAATCTCAC-TAAGTAATAAGTC-TATTC
* * *
456179 GTAAATCAACT-AAAGCTTTTCAAAAATTTCCTTATTTTTCTGAGCAGATCGAT-ATATTTTAAG
1 GTAAATCAACTGAAA-CTTTTCAAAAAGTTCCTTATTTTTCTGAACAGATCGATCA-ATTTGAAG
* * *
456242 CCTCATTTCAGACGTATGGTGAA-A-AGAACTAGCTTCAGCTTCACAAAGGCAATGTAACAAAAT
64 CCTCATTTCAGA--TAT-GTAAAGAGAGAACTAGCTTCAGCCTCACAAAGGCAATGTAACAAAAA
* * * * *
456305 TGATTCCTCTATCCTCCTTTTTTAAAGGTTAGTTTTGAGTTCTTCCTCAAAATGTCTATATTCAT
126 TCATTCCTCTACCCTCCTTTTTTAAAGGTCAGTTTCGAGTTCTTCCTCAAAACGTCTATATTCAT
* * *
456370 TATATCTAGCATCTAACTTGCTCT-AAAGG-GCAAAGAAGTCAGTTTTAAGGTTCTTCCTCAACA
191 CATATATAGCATCTAACTTGCTCTAAAAGGTACAAAG--GTCAGTTTTAA-GTTCTTCCTCAACA
* * ** *
456433 CGCCTAGATTCGTAAAATCACGTAAGTA-AAAGGTCGTGATCATAAATTAGTAGATCACAAGATT
253 CGCATAGATTCATAAAATCACGTAAGTAGAAA-GTCGTGATCATAAATTAACAGACCACAAGATT
* * * * * * * * *
456497 -TGTAATATCCCGTAAATAGGAGGTCGTGATCGTAAATTAGTAGACCGTGAGATTCGTAAGATCC
317 CT-TAAAAACACGTAAATAGAAGGTCGTAATCGTAAATTAGCAGAACGTGAGATTCATAAAATCC
* * * * * *
456561 TGTAAAAAGAAGGTAT-TGATCGTAAATCAGTAGACCGTGAGATTCGT-ATATCCCCATATGTAT
381 CGTAAAAAGAAGGT-TGTGATCATAAATCAGTAGACCATGAGATTCGTAAAAT-CCCATAAGTAA
* **
456624 AAGGTCGTGATCATAAATCAAAATTTCGTGAGATTCGTAGAATCTCA-TAAGTAA-AAGGT-TAT
444 AAGGTCGTCATCATAAATCAAAAGATCGTGAGATTC--AGAATCTCACTAAGTAATAA-GTCTAT
456686 TACC
506 T--C
456690 GTAAATCAAC
1 GTAAATCAAC
456700 GGGCTATGAG
Statistics
Matches: 431, Mismatches: 73, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
508 5 0.01
509 13 0.03
510 193 0.45
511 204 0.47
512 5 0.01
513 11 0.03
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (507 bp):
GTAAATCAACTGAAACTTTTCAAAAAGTTCCTTATTTTTCTGAACAGATCGATCAATTTGAAGCC
TCATTTCAGATATGTAAAGAGAGAACTAGCTTCAGCCTCACAAAGGCAATGTAACAAAAATCATT
CCTCTACCCTCCTTTTTTAAAGGTCAGTTTCGAGTTCTTCCTCAAAACGTCTATATTCATCATAT
ATAGCATCTAACTTGCTCTAAAAGGTACAAAGGTCAGTTTTAAGTTCTTCCTCAACACGCATAGA
TTCATAAAATCACGTAAGTAGAAAGTCGTGATCATAAATTAACAGACCACAAGATTCTTAAAAAC
ACGTAAATAGAAGGTCGTAATCGTAAATTAGCAGAACGTGAGATTCATAAAATCCCGTAAAAAGA
AGGTTGTGATCATAAATCAGTAGACCATGAGATTCGTAAAATCCCATAAGTAAAAGGTCGTCATC
ATAAATCAAAAGATCGTGAGATTCAGAATCTCACTAAGTAATAAGTCTATTC
Found at i:457231 original size:54 final size:54
Alignment explanation
Indices: 457090--457231 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 54
457080 CTAGATTCGC
* * * **
457090 AAAATCACGTAATTAGAAGGTTGTGATTGCAAATTAGCAGATTGCGAGATTTGT
1 AAAATCCCGTAAGTAGAAGGTTGTGATTGTAAATTAGCAGATTGCGAGATTCAT
** * * *
457144 -AAATCCCCGTAAGTAGAAGGTCATTATTTTAAATTAGTAGATTGCGAGATTCAT
1 AAAAT-CCCGTAAGTAGAAGGTTGTGATTGTAAATTAGCAGATTGCGAGATTCAT
*
457198 AAAATCCCGTAAGTAGAAGGTTGTGATCGTAAAT
1 AAAATCCCGTAAGTAGAAGGTTGTGATTGTAAAT
457232 CACATAAATA
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 4 0.06
54 63 0.89
55 4 0.06
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (54 bp):
AAAATCCCGTAAGTAGAAGGTTGTGATTGTAAATTAGCAGATTGCGAGATTCAT
Found at i:457301 original size:54 final size:54
Alignment explanation
Indices: 457243--457356 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
457233 ACATAAATAG
457243 AAGGTCATGATCGAAAATCAGCAGACCATGAGATTCATAAAATCTCGTAAGTAA
1 AAGGTCATGATCGAAAATCAGCAGACCATGAGATTCATAAAATCTCGTAAGTAA
** * ** * * *
457297 AAGGTTGTTATCGGCAATCAGTAGACCATGAGATTCGTAAAATCTCGTAAGTAG
1 AAGGTCATGATCGAAAATCAGCAGACCATGAGATTCATAAAATCTCGTAAGTAA
457351 AAGGTC
1 AAGGTC
457357 GTCATTAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (54 bp):
AAGGTCATGATCGAAAATCAGCAGACCATGAGATTCATAAAATCTCGTAAGTAA
Found at i:457370 original size:54 final size:54
Alignment explanation
Indices: 457256--457389 Score: 160
Period size: 54 Copynumber: 2.5 Consensus size: 54
457246 GTCATGATCG
* * * *
457256 AAAATCAGCAGACCATGAGATTCATAAAATCTCGTAAGTAAAAGGTTGTTATCG
1 AAAATCAGCAGACCATGAGATTCGTAAAATCTCGTAAGTAAAAGGTCGTCATCA
** * * *
457310 GCAATCAGTAGACCATGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATTA
1 AAAATCAGCAGACCATGAGATTCGTAAAATCTCGTAAGTAAAAGGTCGTCATCA
* * *
457364 AAAATCAACGGACCATGAAATTCGTA
1 AAAATCAGCAGACCATGAGATTCGTA
457390 TAGTCCTGGA
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (54 bp):
AAAATCAGCAGACCATGAGATTCGTAAAATCTCGTAAGTAAAAGGTCGTCATCA
Found at i:457802 original size:54 final size:54
Alignment explanation
Indices: 457744--457900 Score: 172
Period size: 55 Copynumber: 2.9 Consensus size: 54
457734 AATCCTATGG
* * * *
457744 GTAGAAGGTCATGATCGTAAATTAGGGAACCGCGAGATTTGTAAAATCTCGTTA
1 GTAGAAGGTCGTGATCATAAATTAGGGAACCGCGAGATTCGTAAAATCTCGTAA
* * ** * *
457798 GTAGAAGATCGTGATCTTAAAATTAGCAAATCGCGAGATTCATAAAATCTCGTAA
1 GTAGAAGGTCGTGATCAT-AAATTAGGGAACCGCGAGATTCGTAAAATCTCGTAA
* * *
457853 GTAGAAGGTCGTGATCATAAATCAGCGG-ACTGTGAGATTCGTAAAATC
1 GTAGAAGGTCGTGATCATAAATTAG-GGAACCGCGAGATTCGTAAAATC
457901 CAAAAATAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 37 0.45
55 46 0.55
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (54 bp):
GTAGAAGGTCGTGATCATAAATTAGGGAACCGCGAGATTCGTAAAATCTCGTAA
Found at i:458306 original size:54 final size:52
Alignment explanation
Indices: 458177--458352 Score: 138
Period size: 54 Copynumber: 3.3 Consensus size: 52
458167 CAACATGCCT
* * * *
458177 AGATTCGTAAAATCAAGTAAGTTGAGGATCGTGATTGTAAATCAACGGAATAGA
1 AGATTCGTAAAATC-CGTAAGTAGAGG-TCGTGATCGTAAATCAACGGAACAGA
* ** * * *
458231 AGATTCGTAAAATCCTATAAGTAGATGGTCGTGATCGTAAATCAGTGGACCGGG
1 AGATTCGTAAAATCC-GTAAGTAGA-GGTCGTGATCGTAAATCAACGGAACAGA
* * * * *
458285 AGATTCGTAAAATCTCGTAAGTAAAAGGTTGTTATCGTAAATCAACAGACCACG-
1 AGATTCGTAAAATC-CGTAAGT-AGAGGTCGTGATCGTAAATCAACGGAACA-GA
*
458339 AGATTTGTAAAATC
1 AGATTCGTAAAATC
458353 TCATATTTAG
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
54 92 0.94
55 6 0.06
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.27
Consensus pattern (52 bp):
AGATTCGTAAAATCCGTAAGTAGAGGTCGTGATCGTAAATCAACGGAACAGA
Found at i:458686 original size:506 final size:505
Alignment explanation
Indices: 457235--460709 Score: 3216
Period size: 507 Copynumber: 6.9 Consensus size: 505
457225 CGTAAATCAC
* * ** * *
457235 ATAAATAGAAGGTCATGATCGAAAATCAGCAGACCATGAGATTCATAAAATCTCGTAAGTAAAAG
1 ATAAGTAGAAGGTCATGATCGTAAATCAGTGGACCGTGAGATTCGTAAAATCTCGTAAGTAAAAG
* ** * * *
457300 GTTGTTATCGGCAATCAGTAGACCATGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATTAA
66 GTCGTTATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATAAA
* * * ** * * * * *
457365 AAATCAACGGACCATGAAATTCGTATAGTCCTGGAAATAAAATGTCGTGATCGTAAATCAACT-A
131 AAATCAGCGGACCGTGAGATTCGTA-AAACCTAGAAGTAAAAGGTCATGATTGTAAATCAACTAA
* * * * * * * * * *
457429 AATTTTTCACAAAGTTCCTTATTTTT-TTAAGTAGTTCGATTCATTTTAAGTCTCATTTCATATG
195 AATTTTTAAGAAAGTTCCTTGTTTTTCTGAA-CAGATCGATCCATTTCAAGCCTCATTTCAAATG
* ** *
457493 TATGGTGTTGAGAACTAGTTTCATACTCACAAAGGCAATATAACAAAATTGATACCTCTATCCTT
259 TATGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCCTC
* * **
457558 CTTTCAAGCTTAGTTTGAGTTCTTCCTCAACACACTTATATTCATCATCTCTAGCAATC-AGTTT
324 CTTTCAAGGTTAGTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGC-ATCTAACTT
* * * * *
457622 TCTCTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACACGCCTAGATTCATAAAAGCACG
388 GCTCTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAATCAAG
** * * * * * *
457687 TAAGTAAAAAGTTGTCATCGTAAATAAATAG-ACCGCAAGGTTCATAAAATCCT
453 TAAGTTGAAGGTCGTGATCGTAAATAAACAGAACAG-AAGATTCATAAAATCCT
** * * * * *
457740 ATGGGTAGAAGGTCATGATCGTAAATTAG-GGAACCGCGAGATTTGTAAAATCTCGTTAGTAGAA
1 ATAAGTAGAAGGTCATGATCGTAAATCAGTGG-ACCGTGAGATTCGTAAAATCTCGTAAGTAAAA
* * * * * * * * * *
457804 GATCGTGATCTTAAAATTAGCAAATCGCGAGATTCATAAAATCTCGTAAGTAGAAGGTCGTGATC
65 GGTCGTTATCGT-AAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATA
* * * * * * *
457869 ATAAATCAGCGGACTGTGAGATTCGTAAAATCC-AAAAATAAAAGTTCATGATTGTAAATTAATT
129 AAAAATCAGCGGACCGTGAGATTCGTAAAA-CCTAGAAGTAAAAGGTCATGATTGTAAATCAACT
* * * * * * *
457933 GAAACTTTTAAGAAATTTCTTTGTTTTTCTGAACAGATCTATCCATTACAAACCTCATTTCAAAT
193 AAAATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAAT
* * * *
457998 ATATGGTGTTGAGAACTAGC-TCTAGCCTCACAAAGACAATGTAACAAAATTGATTCCTCTATCC
258 GTATGGTGTTGAGAACTAGCTTC-AGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCC
* * * * * *
458062 TCCTTTTAATGTCAATTTTGAGTTCTTCCTCAACACACCTATATCCATCATCTCTAGCTTCTAAC
322 TCCTTTCAAGGT-TAGTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCTAAC
*
458127 TTGCTCTGAAGGGTAGAA-AGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAATC
386 TTGCTCTGAAGGGCA-AAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAATC
* * * * *
458191 AAGTAAGTTG-AGGATCGTGATTGTAAATCAACGGAATAGAAGATTCGTAAAATCCT
450 AAGTAAGTTGAAGG-TCGTGATCGTAAATAAACAGAACAGAAGATTCATAAAATCCT
* * *
458247 ATAAGTAGATGGTCGTGATCGTAAATCAGTGGACCGGGAGATTCGTAAAATCTCGTAAGTAAAAG
1 ATAAGTAGAAGGTCATGATCGTAAATCAGTGGACCGTGAGATTCGTAAAATCTCGTAAGTAAAAG
* * * * ** *
458312 GTTGTTATCGTAAATCAACAGACCACGAGATTTGTAAAATCTCATATTTAGAAGGTTGTCATAAA
66 GTCGTTATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATAAA
* ** * *
458377 AAATCAGCAGACAATGAGATTCGTAAAGACCCAGAAGTAAAAGGTCATGATTGTAAATTAACTAA
131 AAATCAGCGGACCGTGAGATTCGTAAA-ACCTAGAAGTAAAAGGTCATGATTGTAAATCAACTAA
* * * * * * *
458442 AATTTTTCATACAGTTCCTTATTTTTCTGAACAGATCGATGCATTTCAAGCCTCATTTCAGACGT
195 AATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAATGT
* * * ** * * * *
458507 TTCGCGAAGAGAACTAGCTTCAGCATTACAAAGGCAATATAAAAAAATTGATACCCCTATCCTCC
260 ATGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCCTCC
* * * *
458572 TTTCAAGGTTAGTTTGAGTTCTTCCTCAACACACTTATAGTCATCATCTTTAGCATCTAGCTTGC
325 TTTCAAGGTTAGTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCTAACTTGC
* * *
458637 TCTAAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAA-GAACAT
390 TCTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAATCAA-GT
* * * * * * *
458701 AAGTAT-AAGGTTGCGGTCGTAAATTAGCAGACCATG-AGATTCATAAAATCCC
454 AAGT-TGAAGGTCGTGATCGTAAATAAACAGAACA-GAAGATTCATAAAATCCT
* * * * * * * *
458753 ATAGGTAGAAGGTCATGATCGTAAATCAATGGACTGTGAGATTTGAAAAATCCCGTTAGTAGAAG
1 ATAAGTAGAAGGTCATGATCGTAAATCAGTGGACCGTGAGATTCGTAAAATCTCGTAAGTAAAAG
* * * ** * * * * * * * *
458818 ATCATGATTTTAAAATTATCAAATCGA-GAGATTCATAAAATCTCGTAACTAGAAGGTCGTGATC
66 GTCGTTATCGT-AAATCAGCAGA-CCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATA
** * * * **
458882 GTAAATCAGTGGACCGTGAGATTCGTAAAATCTAGAAAGTAAAAGGTCATGATTATAAAAAAAAC
129 AAAAATCAGCGGACCGTGAGATTCGTAAAACCTAG-AAGTAAAAGGTCATGATTGT-AAATCAAC
* ** * ** *
458947 TAAAACTTTTAATTAAGTTCCTTGTTTTTTTGAGTAGATCGATCCATTTGAAGCCTCATTTCAAA
192 TAAAATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAA
* * ** * *
459012 TGTATGGTGTTGAAAACTAGCTCCAGCCTCACAAAGAAAATGTAACAAAATTGATTCCTCTATCC
257 TGTATGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCC
* * * *** *
459077 TCCTTCTTTCAAGGTCAATTTTGAGTTCTTCCTCAGCATGTCTATATTCATCATCTCTAGCTTCT
322 T-C--CTTTCAAGGT-TAGTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCT
* * * *
459142 AACTTGCTCTAAAGGGTAGAA-AGGTCAATTTTGAGTTAGTCCTCAACATGCCTAGATTCGTAAA
383 AACTTGCTCTGAAGGGCA-AAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAA
* * * *
459206 ATCAAGTAAGTTGAAGGTCATGGTTGTAAATAAACGGAACAGAAGATTCATAAAATCCT
447 ATCAAGTAAGTTGAAGGTCGTGATCGTAAATAAACAGAACAGAAGATTCATAAAATCCT
* * * ** * *
459265 ATAAGTAGATGGTCATGATCGTAAATCATTAGACCAAGAGATTCGTAAAATCCCGTAAGTAAAAT
1 ATAAGTAGAAGGTCATGATCGTAAATCAGTGGACCGTGAGATTCGTAAAATCTCGTAAGTAAAAG
* * * * ** *
459330 GTCATTATCGTAAATCAACAGACCACGAGGTTCGTAAAATCTCATATTTAGAAGGTTGTCATAAA
66 GTCGTTATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATAAA
** * * *
459395 AAATCAGTAGACCATGAGATTCGTAAAAACCTGGAAGTAAAAGGTCATGACTGTAAATCAACTAA
131 AAATCAGCGGACCGTGAGATTCGT-AAAACCTAGAAGTAAAAGGTCATGATTGTAAATCAACTAA
* * * * * * * *
459460 AGTTTTTTAGAAAGTTCCTTGTTTTT-TTAGCAGATTGATGCATTTCAAGCCTCATTTCAGACGT
195 AATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAATGT
* ** * * * **
459524 TTGGTGAAGAGAACTAGCTTCTGCCTTACAAAGGTAATATAACAAAATTGATACCTCTATCCTTT
260 ATGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCCTCC
* * ** *
459589 TTTCAAGTTTAGTTTGAGTTCTTTCTCAACATGCCTATATTCATCATCTCTAGCATCTAGCTTGC
325 TTTCAAGGTTAGTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCTAACTTGC
* *
459654 TCTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCATAAAAGCATA-T
390 TCTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAATCA-AGT
* * * *
459718 AAGTAGAAGGTCGTGATCGTAAATAAGCAGACCATAAGATTCATAAAATCC-
454 AAGTTGAAGGTCGTGATCGTAAATAAACAGAACAGAAGATTCATAAAATCCT
* * * * * * * * *
459769 ---AGTAGGTAGGTCATGATCATAAATCAATGGACCGCGAGGCTT-GTAAAATCCCATTAGTAGA
1 ATAAGTA-GAAGGTCATGATCGTAAATCAGTGGACCGTGA-GATTCGTAAAATCTCGTAAGTAAA
* * * * ** * * * *
459830 AGATCATGATCTTAAAATTGGCAAATCACTAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGAT
64 AGGTCGTTATCGT-AAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCAT
* * * * * *
459895 CATAATTCAGCGGACCGTGATATTCGTAAAATCTAGAAAGTAAAAGGTCATGATTGTAAATCAAT
128 AAAAAATCAGCGGACCGTGAGATTCGTAAAACCTAG-AAGTAAAAGGTCATGATTGTAAATCAAC
* * * * * * * * *
459960 TGAAACTTTAAAGAAATTTCATTGTTTTTCTGAGCAAATCGATCCATTACAAACCTCATTTCAAA
192 TAAAATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAA
* * * ** * * * *
460025 TGTATCGTTTTGAGAACTAGCTTCAGCTTCACAAAGAAAATCTAACAAAATTGATTCATTTATCC
257 TGTATGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCC
* * * * * *
460090 TCCTTCTTTCAAGGTCACTTTTGAGTTCTTCCTAAACACGCCTATATTCATCATCTCTATCTTCT
322 T-C--CTTTCAAGGTTA-GTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCT
* * * * * **
460155 AACTTGCTTTGAAGGGTAGAA-ATGTCAGTTTTGAGTTATTCTTCAACACGCCTACTTTCGTAAA
383 AACTTGCTCTGAAGGGCA-AAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAA
* ** * * ** * * *
460219 ATCATGTAAGGAGAAGGTTGTGATCGTAAATCAGTAGACCACAAGATTCGA-AAAATCCC
447 ATCAAGTAAGTTGAAGGTCGTGATCGTAAATAAACAGAACAGAAGATTC-ATAAAATCCT
** * ** * * * *
460278 ATTTGTAGAAGGTCATGATAGTAAATCAGCAGACCGTGAGGTTCATAAAATCTCATAATTAAAAG
1 ATAAGTAGAAGGTCATGATCGTAAATCAGTGGACCGTGAGATTCGTAAAATCTCGTAAGTAAAAG
** * * * *
460343 GTCGTTATTATAAATCAGTAGACCATGAGATTTGTAAAATCTCGTAAGTAGAAGGTCGTCATAGA
66 GTCGTTATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATAAA
* *** * * *
460408 AAATCAACGGACCGTGAGATTCGTAATGTCTCAGAAGTAAAAGGTCGTGATTGTAAATCAATTGA
131 AAATCAGCGGACCGTGAGATTCGTAAAACCT-AGAAGTAAAAGGTCATGATTGTAAATCAACTAA
** * * * * *
460473 TGTTTTTCAGAAAGTTCCTTGTTCTTATGAACAGATTGATCCATTTCAAGCCTCATTTCAAACGT
195 AATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAATGT
* ** * * *
460538 ACGGTGAAGAGAACTAGCTTTAGCCTCACAAAGGCAATATAATAAAATTAATACCTCTATCCTCC
260 ATGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCCTCC
* * * *
460603 TTTCAAGGTCAGTTTTGAGTTCTTCCTCAGCACACCTATATTCATCATCTTTAGCATCTATCTTG
325 TTTCAAGGTTAG-TTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCTAACTTG
* ** ** * *
460668 CTCTAAAGGAAAAAGATATCAGTTTTGAGCTATTTCTCAACA
389 CTCTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACA
460710 CATCTAGATT
Statistics
Matches: 2380, Mismatches: 534, Indels: 110
0.79 0.18 0.04
Matches are distributed among these distances:
501 4 0.00
502 57 0.02
503 110 0.05
504 82 0.03
505 232 0.10
506 451 0.19
507 515 0.22
508 261 0.11
509 88 0.04
510 231 0.10
511 138 0.06
512 207 0.09
513 4 0.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (505 bp):
ATAAGTAGAAGGTCATGATCGTAAATCAGTGGACCGTGAGATTCGTAAAATCTCGTAAGTAAAAG
GTCGTTATCGTAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTCATAAA
AAATCAGCGGACCGTGAGATTCGTAAAACCTAGAAGTAAAAGGTCATGATTGTAAATCAACTAAA
ATTTTTAAGAAAGTTCCTTGTTTTTCTGAACAGATCGATCCATTTCAAGCCTCATTTCAAATGTA
TGGTGTTGAGAACTAGCTTCAGCCTCACAAAGGCAATATAACAAAATTGATACCTCTATCCTCCT
TTCAAGGTTAGTTTGAGTTCTTCCTCAACACACCTATATTCATCATCTCTAGCATCTAACTTGCT
CTGAAGGGCAAAGAGGTCAGTTTTGAGTTATTCCTCAACATGCCTAGATTCGTAAAATCAAGTAA
GTTGAAGGTCGTGATCGTAAATAAACAGAACAGAAGATTCATAAAATCCT
Found at i:458793 original size:54 final size:53
Alignment explanation
Indices: 458735--458913 Score: 137
Period size: 54 Copynumber: 3.3 Consensus size: 53
458725 TAGCAGACCA
458735 TGAGATTCATAAAATCCCATAGGTAGAAGGTCATGATCGTAAATCAATGGACTG
1 TGAGATTCATAAAATCCCATA-GTAGAAGGTCATGATCGTAAATCAATGGACTG
* * * ** * ** *
458789 TGAGATTTGA-AAAATCCCGTTAGTAGAAGATCATGATTTTAAAAT-TATCAAATCG
1 TGAGA-TTCATAAAATCCC-ATAGTAGAAGGTCATGATCGT-AAATCAATGGACT-G
* * * * * * *
458844 AGAGATTCATAAAATCTCGTAACTAGAAGGTCGTGATCGTAAATCAGTGGACCG
1 TGAGATTCATAAAATCCCAT-AGTAGAAGGTCATGATCGTAAATCAATGGACTG
*
458898 TGAGATTCGTAAAATC
1 TGAGATTCATAAAATC
458914 TAGAAAGTAA
Statistics
Matches: 92, Mismatches: 26, Indels: 14
0.70 0.20 0.11
Matches are distributed among these distances:
54 55 0.60
55 37 0.40
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (53 bp):
TGAGATTCATAAAATCCCATAGTAGAAGGTCATGATCGTAAATCAATGGACTG
Found at i:458932 original size:109 final size:109
Alignment explanation
Indices: 458736--458941 Score: 268
Period size: 109 Copynumber: 1.9 Consensus size: 109
458726 AGCAGACCAT
** * *
458736 GAGATTCATAAAATCCCATAGGTAGAAGGTCATGATCGTAAATCAATGGACTGTGAGATTTGAAA
1 GAGATTCATAAAATCCCATAACTAGAAGGTCATGATCGTAAATCAATGGACCGTGAGATTCGAAA
* ** * *
458801 AATCCCGTTAGTAGAAGATCATGATTTTAAAATTATCAAATCGA
66 AATCCAGAAAGTAAAAGATCATGATTATAAAATTATCAAATCGA
* * * * *
458845 GAGATTCATAAAATCTCGTAACTAGAAGGTCGTGATCGTAAATCAGTGGACCGTGAGATTCGTAA
1 GAGATTCATAAAATCCCATAACTAGAAGGTCATGATCGTAAATCAATGGACCGTGAGATTCGAAA
* *
458910 AATCTAGAAAGTAAAAGGTCATGATTATAAAA
66 AATCCAGAAAGTAAAAGATCATGATTATAAAA
458942 AAAACTAAAA
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
109 81 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (109 bp):
GAGATTCATAAAATCCCATAACTAGAAGGTCATGATCGTAAATCAATGGACCGTGAGATTCGAAA
AATCCAGAAAGTAAAAGATCATGATTATAAAATTATCAAATCGA
Found at i:459307 original size:54 final size:54
Alignment explanation
Indices: 459249--459375 Score: 148
Period size: 54 Copynumber: 2.4 Consensus size: 54
459239 ACGGAACAGA
* * * **
459249 AGATTCATAAAATCCTATAAGT-AGATGGTCATGATCGTAAATCATTAGACCAAG
1 AGATTCGTAAAATCCCATAAGTAAAAT-GTCATGATCGTAAATCAACAGACCAAG
* * *
459303 AGATTCGTAAAATCCCGTAAGTAAAATGTCATTATCGTAAATCAACAGACCACG
1 AGATTCGTAAAATCCCATAAGTAAAATGTCATGATCGTAAATCAACAGACCAAG
* *
459357 AGGTTCGTAAAATCTCATA
1 AGATTCGTAAAATCCCATA
459376 TTTAGAAGGT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 58 0.95
55 3 0.05
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (54 bp):
AGATTCGTAAAATCCCATAAGTAAAATGTCATGATCGTAAATCAACAGACCAAG
Found at i:460344 original size:54 final size:54
Alignment explanation
Indices: 460232--460467 Score: 195
Period size: 54 Copynumber: 4.4 Consensus size: 54
460222 ATGTAAGGAG
* * * *** * * ** *
460232 AAGGTTGTGATCGTAAATCAGTAGACCACAAGATTCGAAAAATCCCATTTGTAG
1 AAGGTCGTGATAGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCATAAGTAA
* * * *
460286 AAGGTCATGATAGTAAATCAGCAGACCGTGAGGTTCATAAAATCTCATAATTAA
1 AAGGTCGTGATAGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCATAAGTAA
* * * * * *
460340 AAGGTCGTTATTA-TAAATCAGTAGACCATGAGATTTGTAAAATCTCGTAAGTAG
1 AAGGTCGTGA-TAGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCATAAGTAA
* * * * ** *
460394 AAGGTCGTCATAGAAAATCAACGGACCGTGAGATTCGTAATGTCTCAGAAGTAA
1 AAGGTCGTGATAGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCATAAGTAA
*
460448 AAGGTCGTGATTGTAAATCA
1 AAGGTCGTGATAGTAAATCA
460468 ATTGATGTTT
Statistics
Matches: 140, Mismatches: 40, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
53 2 0.01
54 136 0.97
55 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (54 bp):
AAGGTCGTGATAGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCATAAGTAA
Found at i:460412 original size:108 final size:108
Alignment explanation
Indices: 460245--460467 Score: 257
Period size: 108 Copynumber: 2.1 Consensus size: 108
460235 GTTGTGATCG
** * * *
460245 TAAATCAGTAGACCACAAGATTCGAAAAATCCCATTTGTAGAAGGTCATGATAGTAAATCAGCAG
1 TAAATCAGTAGACCACAAGATTCGAAAAATCCCATAAGTAGAAGGTCATCATAGAAAATCAACAG
* * * *
460310 ACCGTGAGGTTCATAAAATCTCATAATTAAAAGGTCGTTATTA
66 ACCGTGAGATTCATAAAATCTCAGAAGTAAAAGGTCGTGATTA
** * * * * * *
460353 TAAATCAGTAGACCATGAGATTTGTAAAATCTCGTAAGTAGAAGGTCGTCATAGAAAATCAACGG
1 TAAATCAGTAGACCACAAGATTCGAAAAATCCCATAAGTAGAAGGTCATCATAGAAAATCAACAG
* ** *
460418 ACCGTGAGATTCGTAATGTCTCAGAAGTAAAAGGTCGTGATTG
66 ACCGTGAGATTCATAAAATCTCAGAAGTAAAAGGTCGTGATTA
460461 TAAATCA
1 TAAATCA
460468 ATTGATGTTT
Statistics
Matches: 94, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
108 94 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (108 bp):
TAAATCAGTAGACCACAAGATTCGAAAAATCCCATAAGTAGAAGGTCATCATAGAAAATCAACAG
ACCGTGAGATTCATAAAATCTCAGAAGTAAAAGGTCGTGATTA
Found at i:460781 original size:54 final size:53
Alignment explanation
Indices: 460722--460889 Score: 176
Period size: 54 Copynumber: 3.1 Consensus size: 53
460712 TCTAGATTTA
* * * *
460722 TAAAATCACATAAGTAAAAGGTCGTAACCGTAAATTAGCGGACCGTGAGATTCG
1 TAAAATCTCATAAGTAGAAGGTCGT-ATCGTAAATTAACGGACCGTGAGATTCG
* * * * * * *
460776 TAAAATCTCGTAGGTAGAAGGTGCG-ATTGTAAATCAACGGACTGCGAGATTTG
1 TAAAATCTCATAAGTAGAAGGT-CGTATCGTAAATTAACGGACCGTGAGATTCG
* * *
460829 TAAAATCTCATAAGTAGAAGGTCATGATCGTAAATTAATGGACCGTAAGATTCG
1 TAAAATCTCATAAGTAGAAGGTCGT-ATCGTAAATTAACGGACCGTGAGATTCG
460883 TAAAATC
1 TAAAATC
460890 CAAAAAGCAA
Statistics
Matches: 90, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.01
53 41 0.46
54 46 0.51
55 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (53 bp):
TAAAATCTCATAAGTAGAAGGTCGTATCGTAAATTAACGGACCGTGAGATTCG
Found at i:461159 original size:54 final size:54
Alignment explanation
Indices: 461097--461300 Score: 164
Period size: 54 Copynumber: 3.8 Consensus size: 54
461087 ACACATCTAG
*
461097 ATTCATAAAATCACGTAAGTAGAAGGTCATGATTGTAAATCAGCAGACTGTGAT
1 ATTCATAAAATCACGTAAGTAGAAAGTCATGATTGTAAATCAGCAGACTGTGAT
* * * * * * *
461151 ATTCATAAAGTCCCGTTAGTAGAAAGTCATTATAGTAAATCAGCGGATCATGAGAT
1 ATTCATAAAATCACGTAAGTAGAAAGTCATGATTGTAAATCAGCAGA-C-TGTGAT
* * * * * * ** * *
461207 -TT-GTAAAATCCCATAAGTAGAAGGTTC-TCATCGTAAATTTGTAGA-TCGTGAG
1 ATTCATAAAATCACGTAAGTAGAAAG-TCATGATTGTAAATCAGCAGACT-GTGAT
* *
461259 ATTCATAAAATCATGTAAGTAAAAAGTCATGATTGTAAATCA
1 ATTCATAAAATCACGTAAGTAGAAAGTCATGATTGTAAATCA
461301 ACTGAAGCTT
Statistics
Matches: 112, Mismatches: 31, Indels: 14
0.71 0.20 0.09
Matches are distributed among these distances:
51 1 0.01
52 3 0.03
53 4 0.04
54 94 0.84
55 5 0.04
56 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.30
Consensus pattern (54 bp):
ATTCATAAAATCACGTAAGTAGAAAGTCATGATTGTAAATCAGCAGACTGTGAT
Found at i:461715 original size:54 final size:55
Alignment explanation
Indices: 461572--461701 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 55
461562 GACGTAAGTA
* *
461572 GAAGGTCGTGATCTTAAATCAGTAGACCGCGAGATTCATAATATCCTGTAAATAG
1 GAAGGTCGTGATCATAAATCAGTAGACCGCGAGATTCATAAGATCCTGTAAATAG
* * * * *
461627 GAA-GTCGTGATCGTAAATTAGTAGACCACGAGATTCGTAAGATCTTGTAAA-AG
1 GAAGGTCGTGATCATAAATCAGTAGACCGCGAGATTCATAAGATCCTGTAAATAG
*
461680 GAAGGTCTTGATCATAAATCAG
1 GAAGGTCGTGATCATAAATCAG
461702 CGGACTGCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 5 0.08
54 57 0.88
55 3 0.05
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (55 bp):
GAAGGTCGTGATCATAAATCAGTAGACCGCGAGATTCATAAGATCCTGTAAATAG
Found at i:461806 original size:54 final size:54
Alignment explanation
Indices: 461731--461886 Score: 152
Period size: 54 Copynumber: 2.9 Consensus size: 54
461721 ATCCCTATAA
* * * * ** * *
461731 ATAAAAGGTTGTGATCGTAAATTAGCGTATTGTGGGATTTGCAAAATCCTGTA-
1 ATAAAAGGTCGTTATCGTAAATCAGCGGATCATGAGATTAGCAAAATCCTGTAT
* * * *
461784 AGTAAAAGGTCGTTATCATAAATCAGTGGATCATGAGATTAGTAAAATCTTGTAT
1 A-TAAAAGGTCGTTATCGTAAATCAGCGGATCATGAGATTAGCAAAATCCTGTAT
* * * *
461839 ATAAAAGGTCGTTATCGTAAATCAGCAGACCACGAGATTCGCAAAATC
1 ATAAAAGGTCGTTATCGTAAATCAGCGGATCATGAGATTAGCAAAATC
461887 TCATAATTAG
Statistics
Matches: 82, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (54 bp):
ATAAAAGGTCGTTATCGTAAATCAGCGGATCATGAGATTAGCAAAATCCTGTAT
Found at i:461901 original size:54 final size:54
Alignment explanation
Indices: 461786--461917 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
461776 ATCCTGTAAG
* ** * * * **
461786 TAAAAGGTCGTTATCATAAATCAGTGGATCATGAGATTAGTAAAATCTTGTATA
1 TAAAAGGTCGTTATCGTAAATCAGCAGACCACGAGATTAGCAAAATCTCATATA
*
461840 TAAAAGGTCGTTATCGTAAATCAGCAGACCACGAGATTCGCAAAATCTCATA-A
1 TAAAAGGTCGTTATCGTAAATCAGCAGACCACGAGATTAGCAAAATCTCATATA
* * *
461893 TTAGAAGGTCGTCATCGAAAATCAG
1 -TAAAAGGTCGTTATCGTAAATCAG
461918 TGGACTGTGA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 64 0.98
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (54 bp):
TAAAAGGTCGTTATCGTAAATCAGCAGACCACGAGATTAGCAAAATCTCATATA
Found at i:462365 original size:54 final size:53
Alignment explanation
Indices: 462216--462365 Score: 158
Period size: 54 Copynumber: 2.8 Consensus size: 53
462206 CAACACACTT
* * ** * * *
462216 AGATTCATAAAATCACGTAATTAGATTGTCGAGATCATAAATTAGCGGATCACG
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCGTGAT-TTAAATTAGAGGATCACG
* * *
462270 AGATTCA-AAAATCCCTGTAAGTAGAAGTTTGTTATCTTAAATTAGAGGATCACG
1 AGATTCATAAAATCCC-GTAAGTAGAAGGTCGTGAT-TTAAATTAGAGGATCACG
*
462324 AGATTCATAAAATCCCGTAAGTAGAGGGTCGTGATTGTAAAT
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCGTGATT-TAAAT
462366 CAATAGACCG
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 8 0.10
54 63 0.80
55 8 0.10
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.29
Consensus pattern (53 bp):
AGATTCATAAAATCCCGTAAGTAGAAGGTCGTGATTTAAATTAGAGGATCACG
Found at i:462942 original size:54 final size:54
Alignment explanation
Indices: 462884--463018 Score: 166
Period size: 54 Copynumber: 2.5 Consensus size: 54
462874 GAACCGTGAC
*
462884 ATTCGTAAAATCCCATAAGTAAAAGGTCATTATC-ATAAATC-ATCAGACCACGAG
1 ATTCGTAAAGTCCCATAAGTAAAAGGTCATTATCGA-AAATCGAT-AGACCACGAG
* * ** * *
462938 ATTCGTAAAGTCTCGTAAGTTGAAGGTCGTTATCGAAAATCGATAGACCATGAG
1 ATTCGTAAAGTCCCATAAGTAAAAGGTCATTATCGAAAATCGATAGACCACGAG
*
462992 ATTCGTAAAGTCCCAGAAGTAAAAGGT
1 ATTCGTAAAGTCCCATAAGTAAAAGGT
463019 TGTGATTGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 64 0.96
55 3 0.04
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (54 bp):
ATTCGTAAAGTCCCATAAGTAAAAGGTCATTATCGAAAATCGATAGACCACGAG
Found at i:462957 original size:612 final size:613
Alignment explanation
Indices: 461849--463033 Score: 1459
Period size: 612 Copynumber: 1.9 Consensus size: 613
461839 ATAAAAGGTC
* *
461849 GTTATCGTAAATCAGCAGACCACGAGATTCGCAAAATCTCATAATTAGAAGGTCGTCATCGAAAA
1 GTTATCGTAAATCAACAGACCACGAGATTCGCAAAATCTCATAAGTAGAAGGTCGTCATCGAAAA
* * * *
461914 TCAGTGGACTGTGAGATTCATAAAGTCCCAGAAGTTAAAAGTCGTGATTGTAAATCAAATGAAGT
66 TCAGCGAACCGTGAAATTCATAAAGTCCCAGAAGTTAAAAGTCGTGATTGTAAATCAAATGAAGT
* * * * * * * * *
461979 GTTTCAGAGATTTTCTTATTTTTCTGAGTAGATCGCTCTTTTCAAGCCTCATTTTAGACGTATGG
131 GTTTCAAAAAGTTCCTTATTTTTCTGAGCAGATCGATCATTTCAAGCCTCATTTCAGACATATGG
* * * *
462044 TGAAGAGCACTAGCTTCAGCCTCACAAAGTCAATATAACAAAATTGATACCTCTATCCTCCTTTC
196 TGAAGAGAACTAGCTTCAGCCTCACAAAGGCAATAGAACAAAATTGATACCGCTATCCTCCTTTC
*
462109 AAGATCAGTTTTGAATTCTTCCTCAACACGCCTATATTCATCATCTCTAGCATTAAACTTGTTCT
261 AAGATCAGTTTTGAATTCTTCCTCAACACGCCTATATTCATCATCTCTAGCATTAAACTTGCTCT
* * * *
462174 GAAGGGTAGAAAGGTCAGTTTAAGTTCTTCATCAACACACTTAGATTCATAAAATCACGTAATTA
326 GAAGGGCAGAAAGGTCAGTTTAAGTTATTCATCAACACACCTAGATTCATAAAATCACGTAAGTA
** * * * * * * * * **
462239 GATTGTCGAGATCATAAATTAGCGGATCACGAGATTCAAAAATCCCTGTAAGTAGAAGTTTGTTA
391 GAAGGTCGAGATCACAAATCAGCGAACCACGACATTCAAAAATCCCTATAAGTAAAAGGTCATTA
* * * * * * *
462304 TCTTAAATTAGAGGATCACGAGATTCATAAAATCCCGTAAGTAGAGGGTCGTGATTGTAAATCAA
456 TCATAAATCACAGGACCACGAGATTCATAAAATCCCGTAAGTAGAAGGTCGTGATCGAAAATCAA
* * *
462369 TAGACCGTGAGATTCGTAAA-TCTAATAAATAAAAGGTCGTGATTGTAAATCAGTGTACCGTGAG
521 TAGACCATGAGATTCGTAAAGTCCAAGAAATAAAAGGTCGTGATTGTAAATCAGTGTACCGTGAG
462433 ATTAATAAAATCCTATAAGTAAAAAAAT
586 ATTAATAAAATCCTATAAGTAAAAAAAT
* * * ** * * *
462461 GTTATCGTAAATCAACAGACCACGAGATTTGTAAAATCTCGTAAGTAGAATTTTGTCGTTGAAAA
1 GTTATCGTAAATCAACAGACCACGAGATTCGCAAAATCTCATAAGTAGAAGGTCGTCATCGAAAA
* * *
462526 TCAGCGAACCGTGAAATTTATAAAGTCTCAGAAG-TAAAAGATCGTGATTGTAAATCAACT-AAT
66 TCAGCGAACCGTGAAATTCATAAAGTCCCAGAAGTTAAAAG-TCGTGATTGTAAATCAAATGAA-
* * * *
462589 TTTTTTCAAAAAGTTCCTTATTTTTCTGAGCAGCTCGATCCATTTCAAGCCTCATTTCATACATA
129 GTGTTTCAAAAAGTTCCTTATTTTTCTGAGCAGATCGAT-CATTTCAAGCCTCATTTCAGACATA
* *
462654 TGGTGTAGAGAACTAGCTTCAGCCTCACAATGGCAATAGAACAAAATTGATACCGCTATCCTCCT
193 TGGTGAAGAGAACTAGCTTCAGCCTCACAAAGGCAATAGAACAAAATTGATACCGCTATCCTCCT
* * * * **
462719 TTCAAGTTTAG-TTTGAGTTC-TCCTCAACACGCCTATATTCATCATTTCTAGCATTTCACTTGC
258 TTCAAGATCAGTTTTGAATTCTTCCTCAACACGCCTATATTCATCATCTCTAGCATTAAACTTGC
* * * **
462782 TCTGAAGGGCA-AAGAGGTCAATTTTGAGTTATTCCTCAACACACCTAGATTTGTAAAATCACGT
323 TCTGAAGGGCAGAA-AGGTC-AGTTTAAGTTATTCATCAACACACCTAGATTCATAAAATCACGT
* * ** *
462846 AAGTAGAAGGTCGTGATCACAAATCAGTGAACCGTGACATTCGTAAAATCCC-ATAAGTAAAAGG
386 AAGTAGAAGGTCGAGATCACAAATCAGCGAACCACGACATTC-AAAAATCCCTATAAGTAAAAGG
* * * * *
462910 TCATTATCATAAATCATCA-GACCACGAGATTCGTAAAGTCTCGTAAGTTGAAGGTCGTTATCGA
450 TCATTATCATAAATCA-CAGGACCACGAGATTCATAAAATCCCGTAAGTAGAAGGTCGTGATCGA
* * * *
462974 AAATCGATAGACCATGAGATTCGTAAAGTCCCAGAAGTAAAAGGTTGTGATTGTAAATCA
514 AAATCAATAGACCATGAGATTCGTAAAGTCCAAGAAATAAAAGGTCGTGATTGTAAATCA
463034 ACTAAAGTTT
Statistics
Matches: 477, Mismatches: 88, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
610 2 0.00
611 62 0.13
612 288 0.60
613 125 0.26
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (613 bp):
GTTATCGTAAATCAACAGACCACGAGATTCGCAAAATCTCATAAGTAGAAGGTCGTCATCGAAAA
TCAGCGAACCGTGAAATTCATAAAGTCCCAGAAGTTAAAAGTCGTGATTGTAAATCAAATGAAGT
GTTTCAAAAAGTTCCTTATTTTTCTGAGCAGATCGATCATTTCAAGCCTCATTTCAGACATATGG
TGAAGAGAACTAGCTTCAGCCTCACAAAGGCAATAGAACAAAATTGATACCGCTATCCTCCTTTC
AAGATCAGTTTTGAATTCTTCCTCAACACGCCTATATTCATCATCTCTAGCATTAAACTTGCTCT
GAAGGGCAGAAAGGTCAGTTTAAGTTATTCATCAACACACCTAGATTCATAAAATCACGTAAGTA
GAAGGTCGAGATCACAAATCAGCGAACCACGACATTCAAAAATCCCTATAAGTAAAAGGTCATTA
TCATAAATCACAGGACCACGAGATTCATAAAATCCCGTAAGTAGAAGGTCGTGATCGAAAATCAA
TAGACCATGAGATTCGTAAAGTCCAAGAAATAAAAGGTCGTGATTGTAAATCAGTGTACCGTGAG
ATTAATAAAATCCTATAAGTAAAAAAAT
Found at i:463919 original size:97 final size:96
Alignment explanation
Indices: 463754--463935 Score: 274
Period size: 97 Copynumber: 1.9 Consensus size: 96
463744 TTAAGAGAAT
* * **
463754 ATTTGACTATTTGGTCAAATGAGAAATTGAAACCCAGCACATTAGGGCACGTTTTCTCAAATTTC
1 ATTTGACTATTTGGTCAAACGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCAAATTTC
* *
463819 CAAATGCAAAACATTGCCTTATTTTAAAGGA
66 CAAAAGCAAAACATTACCTTATTTTAAAGGA
* *
463850 ATTTGGCTATTTGGTCAAACGAAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGAATTT
1 ATTTGACTATTTGGTCAAACG-AAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCAAATTT
*
463915 CCAAAAGCAAAATATTACCTT
65 CCAAAAGCAAAACATTACCTT
463936 TGTTATTTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
96 19 0.25
97 57 0.75
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (96 bp):
ATTTGACTATTTGGTCAAACGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCAAATTTC
CAAAAGCAAAACATTACCTTATTTTAAAGGA
Found at i:464449 original size:25 final size:27
Alignment explanation
Indices: 464421--464481 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
464411 AATTATAAAT
*
464421 TATAAAATATATG-A-ATGTATGTACA
1 TATAAAATATATGCATATCTATGTACA
* *
464446 TATAAAAAATATGCATATCTATGTATA
1 TATAAAATATATGCATATCTATGTACA
464473 TATATAAAT
1 TATA-AAAT
464482 TATAAAGCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 13 0.45
28 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (27 bp):
TATAAAATATATGCATATCTATGTACA
Found at i:466719 original size:31 final size:31
Alignment explanation
Indices: 466684--466749 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
466674 GAAATAGATA
* * *
466684 CATGTGGCAAATGGAGTAATTTTTTTGCAAG
1 CATGTGACAAAAGGAGTAATTTTTTAGCAAG
466715 CATGTGACAAAAGGAGTAATTTTTTAGCAAG
1 CATGTGACAAAAGGAGTAATTTTTTAGCAAG
466746 CATG
1 CATG
466750 GTCAAATATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (31 bp):
CATGTGACAAAAGGAGTAATTTTTTAGCAAG
Found at i:467637 original size:23 final size:23
Alignment explanation
Indices: 467606--467650 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
467596 TACAATCAAC
467606 ATTACATATATC-AACAAGCCATA
1 ATTACATAT-TCAAACAAGCCATA
*
467629 ATTAGATATTCAAAACAAGCCA
1 ATTACATATTC-AAACAAGCCA
467651 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (23 bp):
ATTACATATTCAAACAAGCCATA
Found at i:468935 original size:100 final size:101
Alignment explanation
Indices: 468756--468984 Score: 352
Period size: 100 Copynumber: 2.3 Consensus size: 101
468746 TCTATATTCG
* *
468756 TAGTGCCATAACCCAGTTATGGTCTTATCATAAAAATACCATAGCCCAACTATGGTCTTACATAT
1 TAGTGCCATAACCCAATTATGGTCTTATCATAAAAATACCATAACCCAACTATGGTCTTACATAT
*
468821 AAACACTGTCATGGTCCAAACATGGTCTTACCTTCA
66 AAACACTGCCATGGTCCAAACATGGTCTTACCTTCA
* * * * * *
468857 TA-TGTCATAACCCATTTATGGTCTTATCATCAGAATGCCATAACCCAATTATGGTCTTACATAT
1 TAGTGCCATAACCCAATTATGGTCTTATCATAAAAATACCATAACCCAACTATGGTCTTACATAT
* *
468921 AAACACTGCCATGGTCCAACCATGGTCTTACGTTCA
66 AAACACTGCCATGGTCCAAACATGGTCTTACCTTCA
468957 TAGTGCCATAACCCAATTATGGTCTTAT
1 TAGTGCCATAACCCAATTATGGTCTTAT
468985 TCGTCAATCC
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 90 0.78
101 25 0.22
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (101 bp):
TAGTGCCATAACCCAATTATGGTCTTATCATAAAAATACCATAACCCAACTATGGTCTTACATAT
AAACACTGCCATGGTCCAAACATGGTCTTACCTTCA
Found at i:468979 original size:33 final size:31
Alignment explanation
Indices: 468842--468983 Score: 104
Period size: 33 Copynumber: 4.3 Consensus size: 31
468832 TGGTCCAAAC
* *
468842 ATGGTCTTACCTTCATATGTCATAACCCATTT
1 ATGGTCTTA-CTTCATATGCCATAACCCAATT
* *
468874 ATGGTCTTATCATCAGAATGCCATAACCCAATT
1 ATGGTCTTA-CTTCA-TATGCCATAACCCAATT
* * *** **
468907 ATGGTCTTACATATAAACACTGCCATGGTCCAACC
1 ATGGTCTTAC-T-T-CATA-TGCCATAACCCAATT
468942 ATGGTCTTACGTTCATAGTGCCATAACCCAATT
1 ATGGTCTTAC-TTCATA-TGCCATAACCCAATT
468975 ATGGTCTTA
1 ATGGTCTTA
468984 TTCGTCAATC
Statistics
Matches: 83, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
32 14 0.17
33 44 0.53
34 3 0.04
35 22 0.27
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (31 bp):
ATGGTCTTACTTCATATGCCATAACCCAATT
Found at i:483494 original size:87 final size:87
Alignment explanation
Indices: 483347--483585 Score: 365
Period size: 87 Copynumber: 2.7 Consensus size: 87
483337 ATTTGAATTA
* *
483347 AGTGAAT-TCATCAAGTCCATCTTAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGAG
1 AGTGAATAT-ATCAAGTCCGTCTCAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGAG
*
483411 TAATAAATTCAATCTCACATGTT
65 TAATAAATTCAATCTCACATGTC
* * *
483434 GGTGAATATATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAACTAATTAAGAGT
1 AGTGAATATATCAAGTCCGTCTCAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGAGT
483499 AATAAATTCAATCTCACATGTC
66 AATAAATTCAATCTCACATGTC
* * *
483521 AGTGAATATATCAAGTCCGTCTGAATAGGACCATCCAAA-TCCTGGGATATGAATTCATTAAGAG
1 AGTGAATATATCAAGTCCGTCTCAATAGGACCACCCAAACT-CTGGGATATGAACTCATTAAGAG
483585 T
65 T
483586 GAGAACTCAA
Statistics
Matches: 138, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
86 1 0.01
87 136 0.99
88 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (87 bp):
AGTGAATATATCAAGTCCGTCTCAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGAGT
AATAAATTCAATCTCACATGTC
Found at i:484982 original size:26 final size:25
Alignment explanation
Indices: 484953--485005 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
484943 ATCCGCTTAT
484953 GGTCCTCCGACCAACTCAAACTCTAA
1 GGTCCTCCGACCAACTCAAACTC-AA
* * *
484979 GGTCTTCGGACCCACTCAAACTCAA
1 GGTCCTCCGACCAACTCAAACTCAA
485004 GG
1 GG
485006 GACCTTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.36, G:0.17, T:0.19
Consensus pattern (25 bp):
GGTCCTCCGACCAACTCAAACTCAA
Found at i:489087 original size:171 final size:168
Alignment explanation
Indices: 488802--489141 Score: 581
Period size: 171 Copynumber: 2.0 Consensus size: 168
488792 ATCTGGTCTC
* * * *
488802 TCTCTCTCTCTCTTTCTGATGCGTTTGAGGTTTACATCTTATTTTGTGATTTCTGCGAAGAGTTG
1 TCTCTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGCGAAGAGTTG
*
488867 AAATACTTCATTTCATCTAGGTGAAAGGTTTTATGTTAGAAGTCAAATTAATTATTTTATATTAA
66 AAATACTTCATTTCATCTAGGTGAAAGGTTTTATGTTAGAAGTCAAATTAATTA-TTTAGATTAA
*
488932 TTTATTACTTATTTTATTAGGAGAGGTATTAGGAGTTCAAT
130 TTTATTACTTA--TTATTAGGAGAAGTATTAGGAGTTCAAT
*
488973 TCTCTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGTTTTCTGCGAAGAGTTG
1 TCTCTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGCGAAGAGTTG
*
489038 AAATACTTCATTTTATCTAGGTGAAAGGTTTTATGTTAGAAGTCAAATTAATTATTTAGATTAAT
66 AAATACTTCATTTCATCTAGGTGAAAGGTTTTATGTTAGAAGTCAAATTAATTATTTAGATTAAT
489103 TTATTACTTATTATTAGGAGAAGTATTAGGAGTTCAAT
131 TTATTACTTATTATTAGGAGAAGTATTAGGAGTTCAAT
489141 T
1 T
489142 GAAAGTATCT
Statistics
Matches: 161, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
168 28 0.17
170 20 0.12
171 113 0.70
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.45
Consensus pattern (168 bp):
TCTCTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGCGAAGAGTTG
AAATACTTCATTTCATCTAGGTGAAAGGTTTTATGTTAGAAGTCAAATTAATTATTTAGATTAAT
TTATTACTTATTATTAGGAGAAGTATTAGGAGTTCAAT
Found at i:505999 original size:67 final size:69
Alignment explanation
Indices: 505914--506045 Score: 178
Period size: 69 Copynumber: 1.9 Consensus size: 69
505904 ATAGACAATA
* * * * *
505914 TAATGGTTTTGCCTTTTAAC-TTAATAA-CTAAACATTTATCAAAATGACGTAATTTTGTCTTTT
1 TAATGATTTTGACTTTTAACTTTAAAAAGCTAAACATTTATCAAAACGACGTAATTTTGCCTTTT
505977 AACT
66 AACT
* * *
505981 TAATGATTTTGACTTTTAACTTTAAAAAGGTAAACATTTATCAAAACGATGTAGTTTTGCCTTTT
1 TAATGATTTTGACTTTTAACTTTAAAAAGCTAAACATTTATCAAAACGACGTAATTTTGCCTTTT
506046 CTTATTTGGA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 18 0.33
68 6 0.11
69 31 0.56
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (69 bp):
TAATGATTTTGACTTTTAACTTTAAAAAGCTAAACATTTATCAAAACGACGTAATTTTGCCTTTT
AACT
Done.