Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2556

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 545

Length: 909
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29


Found at i:406 original size:30 final size:30

Alignment explanation


    Indices: 370--432  Score: 117
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        360 ACTTAACAAG

                                          
        370 CAAATGTCTCTAAAATAATAACAAAATTAA
          1 CAAATGTCTCTAAAATAATAACAAAATTAA

                     *                    
        400 CAAATGTCTTTAAAATAATAACAAAATTAA
          1 CAAATGTCTCTAAAATAATAACAAAATTAA

               
        430 CAA
          1 CAA

        433 TAAAATAAGT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27


Consensus pattern (30 bp):   
CAAATGTCTCTAAAATAATAACAAAATTAA
Done.