Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold287
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1864789
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 140151 characters in sequence are not A, C, G, or T
File 7 of 7
Found at i:1778936 original size:40 final size:40
Alignment explanation
Indices: 1778837--1778963 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
1778827 TACGTGCTTA
* * * *
1778837 TCCTATTAGCACTACGGTGCTCCTGATAGTAC-TGTCGTAC
1 TCCTGTTAGCACTACAGTGCTCCTGATAGTACAT-TTGTGC
*
1778877 TCCTGTTAGCACTATAGTGCTCCTGATAGTACATTTGTGC
1 TCCTGTTAGCACTACAGTGCTCCTGATAGTACATTTGTGC
* * * * * *
1778917 TCTTGTTTGGACTACAGTGCCCCTGATTGCACATTTGTGC
1 TCCTGTTAGCACTACAGTGCTCCTGATAGTACATTTGTGC
1778957 -CCTGTTA
1 TCCTGTTA
1778964 TACACTCTGG
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 5 0.07
40 66 0.92
41 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (40 bp):
TCCTGTTAGCACTACAGTGCTCCTGATAGTACATTTGTGC
Found at i:1784355 original size:33 final size:33
Alignment explanation
Indices: 1784313--1784380 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
1784303 TCGAGCAGCG
1784313 TTAGGAAGACGAGTCGCTGGAATACATCCTTAC
1 TTAGGAAGACGAGTCGCTGGAATACATCCTTAC
1784346 TTAGGAAGACGAGTCGCTGGAATACATCCTTAC
1 TTAGGAAGACGAGTCGCTGGAATACATCCTTAC
1784379 TT
1 TT
1784381 CACTCGCATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (33 bp):
TTAGGAAGACGAGTCGCTGGAATACATCCTTAC
Found at i:1789576 original size:25 final size:25
Alignment explanation
Indices: 1789516--1789576 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
1789506 CTCCTAAATT
*
1789516 TTAATTTAATTATCTAATTTTTAAA
1 TTAATTAAATTATCTAATTTTTAAA
* * *
1789541 TTTATTGAATTAT-TAATATTTTATA
1 TTAATTAAATTATCTAAT-TTTTAAA
1789566 TTAATTAAATT
1 TTAATTAAATT
1789577 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTAAA
Found at i:1795030 original size:122 final size:123
Alignment explanation
Indices: 1794803--1795047 Score: 483
Period size: 122 Copynumber: 2.0 Consensus size: 123
1794793 GTTCACTTAG
1794803 TTTAAAATCTTAGTTTTTAATCACTCTCTTCAAACAAAATATTTTTCTTCACCAAAGTATTTTAA
1 TTTAAAATCTTAGTTTTTAATCACTCTCTTCAAACAAAATATTTTTCTTCACCAAAGTATTTTAA
1794868 ATAGCATTCATAAATAATTCTTTTCACAGTCCCTGTGGGTACGATAACTCAACATTTA
66 ATAGCATTCATAAATAATTCTTTTCACAGTCCCTGTGGGTACGATAACTCAACATTTA
1794926 TTTAAAATC-TAGTTTTTAATCACTCTCTTCAAACAAAATATTTTTCTTCACCAAAGTATTTTAA
1 TTTAAAATCTTAGTTTTTAATCACTCTCTTCAAACAAAATATTTTTCTTCACCAAAGTATTTTAA
1794990 ATAGCATTCATAAATAATTCTTTTCACAGTCCCTGTGGGTACGATAACTCAACATTTA
66 ATAGCATTCATAAATAATTCTTTTCACAGTCCCTGTGGGTACGATAACTCAACATTTA
1795048 CTCGTCACTT
Statistics
Matches: 122, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
122 113 0.93
123 9 0.07
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (123 bp):
TTTAAAATCTTAGTTTTTAATCACTCTCTTCAAACAAAATATTTTTCTTCACCAAAGTATTTTAA
ATAGCATTCATAAATAATTCTTTTCACAGTCCCTGTGGGTACGATAACTCAACATTTA
Found at i:1796224 original size:25 final size:25
Alignment explanation
Indices: 1796190--1796258 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
1796180 ATACATGGAA
* *
1796190 AAATGTTCACACGAGTTGT-ATCTAT
1 AAATGCTCACACGAGCTGTAAT-TAT
*
1796215 AAATGCTCACACGAGCTGTAATTGT
1 AAATGCTCACACGAGCTGTAATTAT
1796240 AAATGCTCACACGAGCTGT
1 AAATGCTCACACGAGCTGT
1796259 GAAATGGGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 38 0.95
26 2 0.05
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (25 bp):
AAATGCTCACACGAGCTGTAATTAT
Found at i:1798797 original size:17 final size:17
Alignment explanation
Indices: 1798772--1798807 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
1798762 AAATGAGAGG
*
1798772 TTGAGTTTGCTATTGAA
1 TTGAATTTGCTATTGAA
1798789 TTGAATTTGCTATTGAA
1 TTGAATTTGCTATTGAA
1798806 TT
1 TT
1798808 AATACCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (17 bp):
TTGAATTTGCTATTGAA
Found at i:1802242 original size:67 final size:67
Alignment explanation
Indices: 1802097--1802282 Score: 166
Period size: 67 Copynumber: 2.7 Consensus size: 67
1802087 TTGAGTCTGA
* * *
1802097 CAAGACGTTAAACATGGAGATTTAAA-GTGTAAGACCATAGCTCGACTATGACAACCGATGGAGT
1 CAAGAAGTTAAACATGG-G-GTAAAACGTGTAAGACCATAGCTCGACTATGACAACCGATGGAGT
1802161 TCGC
64 TCGC
* * * *
1802165 CAAGACGTTAAACATGGGGTAAAACGTGTAAGTCCATTGCTCGACTATGGCAA-C-ATAGAGAG-
1 CAAGAAGTTAAACATGGGGTAAAACGTGTAAGACCATAGCTCGACTATGACAACCGAT-G-GAGT
1802227 TCTGC
64 TC-GC
* * * * *
1802232 CAGGAAGTTAATCATGGGGTTAAATCAG-GTAAGACCATAGCTTGGCTATGA
1 CAAGAAGTTAAACATGGGG-TAAAAC-GTGTAAGACCATAGCTCGACTATGA
1802283 TAGAATTTGT
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
65 2 0.02
66 8 0.08
67 47 0.48
68 40 0.41
69 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (67 bp):
CAAGAAGTTAAACATGGGGTAAAACGTGTAAGACCATAGCTCGACTATGACAACCGATGGAGTTC
GC
Found at i:1827570 original size:7 final size:7
Alignment explanation
Indices: 1827558--1827590 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
1827548 ATATTGTCAC
1827558 AAAATTT
1 AAAATTT
1827565 AAAATTT
1 AAAATTT
1827572 AAAATTT
1 AAAATTT
1827579 AAAATTT
1 AAAATTT
1827586 AAAAT
1 AAAAT
1827591 AATATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAAATTT
Found at i:1828747 original size:27 final size:27
Alignment explanation
Indices: 1828709--1828769 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
1828699 GCTACCCTGC
1828709 TTGATCCATTTGAAGACCTAGATATCT
1 TTGATCCATTTGAAGACCTAGATATCT
1828736 TTGATCCATTTGAAGACCTAGATATCT
1 TTGATCCATTTGAAGACCTAGATATCT
1828763 TT-ATCCA
1 TTGATCCA
1828770 CATGTAACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.38
Consensus pattern (27 bp):
TTGATCCATTTGAAGACCTAGATATCT
Found at i:1856562 original size:194 final size:194
Alignment explanation
Indices: 1856222--1864789 Score: 9188
Period size: 194 Copynumber: 44.2 Consensus size: 194
1856212 NNNNNNNNNN
* * * *
1856222 CATCAAAGAACCTTAATTCATTTTCCAAACAGTGACTCCACTATAACGAACCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
*
1856287 TGTAACTTGACTTGTTTACACCCCTAG-AAGACTGCCTAAGAAAATTATTAGCAAATTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
*
1856351 AAGGTCATAAGACAAGTTTGAGTCTTAGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * * *
1856416 CATAAAAGAAGCTTAATTCATTTTATAAACAGTAACTCCACTATAGCGAGTCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1856481 TGTAACCTGACCTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTAATAGC-ACATTATCATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAAC-TTATTATTG
*
1856545 AAGGTCATAAGACAAGTTTGAGTCTTAGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1856610 CATCAAAGAAGCTTTATTCATTTTACAAACAGTGACT-CACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
** *
1856674 TGTAACTTGACTTGTTTACACCCCTAGAACA-CTGGATAAGAAAATTATTAGCGACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAA-AGCTGCCTAAGAAAATTATTAGCAACTTATTATTG
* *
1856738 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATATATCATGAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1856803 CATCAAAGAAGCTTAATTCATTTAACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1856868 TGTAACTTGACTTGTTTACACCCCTAG-AAGACAGCCTAAGAAAATTATTAGCAACTTATTATAG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* *
1856932 AAGGTCATAAGACAAGTTTGAGTCTTGGCGCATTGAAACTATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1856997 CATCAAAGAAGCTTAATTCATTTAACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1857062 TCG-AACTTGACTTGTTTACACCCTTAGAAGGCAGCCTAA-AGAAATTATTAGCAATTTATTATT
66 T-GTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGA-AAATTATTAGCAACTTATTATT
* * * * *
1857125 GAAGGTCATAGGACAAGTTTGAGTCTTGGGGCATCGAAGCCGTGTTATATACACATGTATCATCA
129 GAAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCA
1857190 C
194 C
* * *
1857191 CATGAAAGAAGCTTAATTCATTTAACAAACAGTGACTCCACTATAGCGACCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1857256 TGTAACTTGACTTGTTTACATCCTTAGAAGGCTGCCTAA-AGAAATTATTAGCAATTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGA-AAATTATTAGCAACTTATTATTG
* * *
1857320 AAGGTCATAGGACAAGTTTGAGTCTCGGGGCATTGAAACCATGTTATATGCACATGTAACATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* *** *
1857385 CATCAAAGAAGGTTAACAAATTTTACAAACAGTGACTCCACTATAGCGACCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1857450 TGTAACTTGACTTGTTTACATCCTTAGAAGGCTGCCTAA-AGAAATTATTAGCAATTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGA-AAATTATTAGCAACTTATTATTG
* * *
1857514 AAGGTCATAGGACAAGTTTGAGTCTCGGGGCATTGAAACCATGTTATATGCACATGTAACATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* *** *
1857579 CATCAAAGAAGGTTAACAAATTTTACAAACAGTGACTCCACTATAGCGACCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1857644 TGTAACTTGACTTGTTTACATCCTTAGAAGGCTGCCTAA-AGAAATTATTAGCAATTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGA-AAATTATTAGCAACTTATTATTG
* *
1857708 AAGGTCATAGGACAAGTTTGAGTCTCGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * * *
1857773 CATCAAAGAACCTTAATTGATTTTCCAAACAGTGACTCCACTATAGCGAACCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1857838 TGTAACTTGACTTGTTTACACCCCTAG-AAGACTGTCTTAGTAAATTATTAGCAAATTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* * * *
1857902 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATCGAAGCCGTGTTATATACACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * *
1857967 CATGAAAGAAGCTTAATTCATTTTACAAACAGTAACTCCACTATAGCGAGTCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1858032 TGTAACCTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTAATAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
*
1858097 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATATATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* *
1858161 CATCAAAGAAGCTTTATTCCTTTTACAAACAGTGACT-CACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1858225 TGTAACTTGACTTGTTTACACCCCGAGAACA-CTGGCTAAGAAAATTTTTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAA-AGCTGCCTAAGAAAATTATTAGCAACTTATTATTG
*
1858289 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATATATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1858354 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCATA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1858419 TGTAGCTTGACTTATTTACACTCCTAG-AAGACAGCCTAAGAAAATTATTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
1858483 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
1858548 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1858613 TGGAACATGACTTGTTTACACCCTTAGAAGGCTGCCTAA-AGAAATTATTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGA-AAATTATTAGCAACTTATTATTG
* *
1858677 AAGGTCATAAGACAAGTTTGAGTCTTGCGGCATTGAAAGCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
1858742 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * ***************
1858807 TGTAACCTGACTTGTTTACACCCCTAGAAGGCTGCCTAANNNNNNNNNNNNNNNNNNNNNNNNNN
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAA-----------GAAAATTATTAGCAA
*****************************************************************
1858872 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
120 CTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACAT
**********
1858937 NNNNNNNNNN
185 GTATCATCAC
*****************************************************************
1858947 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
*****************************************************************
1859012 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
****************************************************************
1859077 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*****************************************************************
1859141 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
*****************************************************************
1859206 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
***************************************
1859271 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * * *
1859335 CATCAAAGAAGCTTAACTCATTTTACAAGCAGTGACTCCACTGTAGCGAGCCC-A-GAGCTCAAA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTC--A
* *
1859398 TATGTAACTTGACTTGTTTACACCCCTAG-AAGACTGCCTAAGAAAATTATTAGCAACTTACTAT
64 CATGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTAT
1859462 TGAAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATC
128 TGAAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATC
1859527 AC
193 AC
* * * *
1859529 CATCGAAGAAGCTTAATTCATTTTACAAACAGCGACTCCACTATAGCGAGCCTAGCTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
** *
1859594 TGTAACTTGACTTACTTACACCCCTAG-AAGACTTCCTAAGAAAATTATTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* * *
1859658 AAGGTCATAAGACAAGTTTGAGTCTTGGAGAATTGAAACCATGTTATATGCACATGTATTATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * * * *
1859723 CATCAAACAAGCTTAATTCATTTTACAAGCAATGACCCCACTATAGCGAGCGCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1859788 TGTAACTTGACTTGTTTACACCCTTAGAAGGCTGCCTAAGAAAATTATTAGCAACTTATTATTAA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* *
1859853 AGGTTATAAGACAAGTTTGACTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1859917 CATCAAAGAAGCTTAATTCATTTTACAATCAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1859982 TGGAACTTGACTTGTTTACACCCTTAGAAGGCTGCCTAAGGAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* *
1860047 TGGTCCTAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * *
1860111 CATCAAAGAAGCTTAATTCATTTTAGAAACAGTAACTCCACTATAGCGAGTCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * ** *
1860176 TCTAACCTGACTTTTTTACACCCCTAGATTGCTGCCTAAGAAAATTAATAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* * * * *
1860241 AGGTCATAAGACAAGTTTGAATATTAGGGCATTGAGACCATGTTATATGCACATATATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
1860305 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
*
1860370 TGTAACTTGACTTGTTTACACCCCTAG-AAGACTACCTAAGAAAATTATTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* * * *
1860434 AAGGTCATAAGACAAGTTTAAGTCTTGGTGCATTGAATCCATGTTATATGCACATGTATCACCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* *
1860499 CATCAAAGAAGCTTACTTCATTTTACAAACAGCGACTCCACTATAGCGAGCCCAA--A--T---A
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1860557 TGTAACTTAACTTGTTTACACCCCTAG-AAGACTGCCTAAGAAAATTATTATCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
*
1860621 AAGGTCATAAGACAAGTTTAAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
** * * *
1860686 CATCAAAGAAGCTTAATAAATTTTACAAACAGTGACTCCACTATATCGAGCCGAACTACCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * * * *
1860751 TGGAGCTTGACCTGTTTACACCCCTA-CAAGACTGCTTAAGAAAATTATTAGCAACTTACTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
*
1860815 AAGGTCATAAGACAAGTTTGAGTCTT-GGGCAATTGAAACCACGTTATATGCACATGTATCATCA
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGC-ATTGAAACCATGTTATATGCACATGTATCATCA
1860879 C
194 C
* * *
1860880 CATCGAAGAAGCTTAATTCATTTTACAAACAGCGACTCCACTATAGCGAGCCCAACTAGCTCATA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1860945 TGTAACTTAACTTGTTTACACCCCTAG-AAGACTGCCTAAGAAAATTACTATCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
*
1861009 AAGGTCATAAGACAAGTTTAAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
** * * *
1861074 CATCAAAGAAGCTTAATAAATTTTACAAACAATGAGTCCACTATAGCGAGCCCAACTACCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1861139 TGGAACTTGACTTGTTTACACCCCTAG-AAGATTACCTAAGAAAATTATTAGCAACTTACTATT-
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* * * *
1861202 AACGGTCATAAGACAAGTTTGAGTCTTGGAGAATTCAAAACCATGTTATATGCACATGTATTATC
130 AA-GGTCATAAGACAAGTTTGAGTCTTGGGGCATT-GAAACCATGTTATATGCACATGTATCATC
1861267 AC
193 AC
* * * * * *
1861269 CATAAAACAAGCTTAATTCATTTTACAAGCAATGACCCCACTATAGCGAGCCGAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1861334 TGTAACTTGTCTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTAATAGTAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
*
1861399 ACGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * * *
1861463 CATCAAAGAAGCTTTATTCATTTTCCAAACAGTGAC-ACACTATGGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1861527 TGTAACATGACTTGTTTACACCCCTAGAACA-CTGGCTAAGAAAATTAGTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAA-AGCTGCCTAAGAAAATTATTAGCAACTTATTATTG
1861591 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * *
1861656 CATCAAAGAAGCTTAATTCCTTTTACAAACTGTGACTCCACTATAGTGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
*
1861721 TGTAACTTGACTT-TTCTACACCCCTAG-AAGATAGCCTAAGAAAATTATTAGCAACTTATTATT
66 TGTAACTTGACTTGTT-TACACCCCTAGAAAGCT-GCCTAAGAAAATTATTAGCAACTTATTATT
* *
1861784 GAAGGTCATAAGACAAGTTTGAGTCTTAGGGCATTGAAACCATGTTATATGCACATGTATTATCA
129 GAAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCA
1861849 C
194 C
* * * * * * *
1861850 CATCAAACAAGCTTAATTCATTTTAGAAGCAATGACCCCTCTACAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1861915 TGTAACTTGACTTGTTTACACCCCTCGAAAGCTGCCTAAGAAAATTAATAGTAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
*
1861980 AGGTCATAAGACAAGTTTGAGTCTTAGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* *
1862044 CATCAAAGAAGCTTTATTCATTTTACAAACAGTGACT-CACTATA--G-GCCCAACTAGCTCATA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
*
1862105 TGTAACTTGACTTGTTTACACCCCTAG-AAGACTGCCTAAGAAAATAATTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
*
1862169 AAGGTCATAGGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
1862234 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1862299 TGTAACTTGACTTGTTTACACCCCTAG-AGGACTGCCTAAGAAAATTTTTAGCAACTTATTATCG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* * * *
1862363 AAGTTCATAAGACAAGTTTGAGTGTTGCGGC-TTCGAAAGCATGTTATATGCACATGTATCATCA
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATT-GAAACCATGTTATATGCACATGTATCATCA
1862427 C
194 C
* * *
1862428 CATCAAAGAAGCTTAACTCATTTTACAAGCAGTGACTCCACTATAGCGAGCCCAACTAGCTAACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1862493 TGTAACTTGACTTGTTTACACCCCTAGAAGGCTGCCAAAGAAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* * * *
1862558 ATGTCTTACGACAAGTTTGAGTCTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* *
1862622 CATCAAAGAAGCTTAATTCATTTTACAAGCAGTGACTCCACCATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1862687 TGTAACTTGACTTGTTTACACCCCTAGAAGGCTGCCAAAGAAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* * * *
1862752 ATGTCTTACGACAAGTTTGAGTCTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
** *
1862816 CATCAAAGAAGCTTAATAAATTTTACAAACAGTGACTCCACTATAGCGAGTCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * **
1862881 TGGAACTTGACTTGTTTACACCCTTAGAAGGCTGCAAAAGAAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* *
1862946 AGGTCATAAGACAAGTTTGAGTGTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
** *
1863010 CATCAAAGAAGCTTAATAAATTTTACAAACAGTGACTCCACTATAGCGAGTCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * **
1863075 TGGAACTTGACTTGTTTACACCCTTAGAAGGCTGCAAAAGAAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* *
1863140 AGGTCATAAGACAAGTTTGAGTGTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
** *
1863204 CATCAAAGAAGCTTAATAAATTTTACAAACAGTGACTCCACTATAGCGAGTCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1863269 TGGAACTTGACTTGTTTACACCCCTAGAAGGCTGCCAAAGAAAATTATTAGCAACTCATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* * *
1863334 AGGTCAGAAGACAAGTTTGAGTCTTAGGGCTTTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
**
1863398 CATCAAAGAAGCTTAATAAATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * ** *
1863463 TGGAACTTGACTTGTTTACACCCTTAGAAGGCTGCAAAAGAAAATTATTAGCAACTTACTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* * * *
1863528 AGGTCCTAAGACAAGTTTGAGTGTTGCGGCATTGAAACCATGTTATATGCACATGTATTATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1863592 CATCAAAGAAGCTTAATTCATTTTACAATCAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1863657 TGTAACATGACTTGTTTACACACCTAG-AAGACTGCCTAAGAAAATTATTAGCAACGTACTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* *
1863721 AAGGTCATAAGACAAGTTTGAGTGTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
* * * *
1863786 CATCAAAGAACCTTAATTCATTTTACAAATAGTGACTCCACAATAGCGAGCCCAGCTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1863851 TGTAACATGACTTGTTTACACACCTAG-AAGACTGCCTAAGAAAATTATTAGCAACGTACTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* ** *
1863915 AAGGTCATAAGACAAGTTTGAGTCTTGGGGAATAAAAACCATGTTATATGCACATGTATTATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1863980 CATCAAAGAAGCTTAATTCATTTTACAATCAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1864045 TGTAACTTGACTTGTTTACACCCCTAGAAGGCTGCCAAAGAAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* * *
1864110 AGGTCATCAGACAAGTTTGTGTCTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
1864174 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * * *
1864239 TGTAACCTGACTTGTTTACACCCCTAG-AAGACTGCCTAAGAAAATTAGTAGCAACTTAGTAGTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* *
1864303 AAGGTCATACGACAAGTTTGAGTCTTGGGGCATTGAAACCAT-TGTATATGCACAGGTATCATCA
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGT-TATATGCACATGTATCATCA
1864367 C
194 C
* * *
1864368 CATCAATGAACCTTAATTCATTTTACAAATAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* * *
1864433 TGTAACTTGACTTGTTTACACCCCTAGAAGGCGGCCAAAGAAAATTATTAGCAACTTATTATTGA
66 TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
* *
1864498 AGGTCATAAGACAAGTTTGTGTCTTGCGGCATTGAAACCATGTTATATGCACATGTATCATCAC
131 AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
1864562 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
* *
1864627 TGTAACTTGACTTGTTTACACCCCTAG-AAGACTGGCTAAGAAAAGTATTAGCAACTTATTATTG
66 TGTAACTTGACTTGTTTACACCCCTAGAAAG-CTGCCTAAGAAAATTATTAGCAACTTATTATTG
* * * *
1864691 AAGGTCATAAGACAAGTTTGAGTCTTGGGGAATTTAAACCATGTTATATGCACATGTCTTATCAC
130 AAGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
*
1864756 CATCAAAGAAGCTTAATTCATTTTACAAGCAGTG
1 CATCAAAGAAGCTTAATTCATTTTACAAACAGTG
Statistics
Matches: 7407, Mismatches: 891, Indels: 152
0.88 0.11 0.02
Matches are distributed among these distances:
187 173 0.02
189 4 0.00
190 171 0.02
191 9 0.00
192 4 0.00
193 571 0.08
194 6266 0.85
195 199 0.03
196 10 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.27
Consensus pattern (194 bp):
CATCAAAGAAGCTTAATTCATTTTACAAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACA
TGTAACTTGACTTGTTTACACCCCTAGAAAGCTGCCTAAGAAAATTATTAGCAACTTATTATTGA
AGGTCATAAGACAAGTTTGAGTCTTGGGGCATTGAAACCATGTTATATGCACATGTATCATCAC
Done.