Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold808

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6029
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:1180 original size:3 final size:3

Alignment explanation


    Indices: 1172--1209  Score: 76
    Period size: 3  Copynumber: 12.7  Consensus size: 3

       1162 ATAAGCTGCA

                                                              
       1172 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

       1210 GATAAAACAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:5450 original size:15 final size:15

Alignment explanation


    Indices: 5427--5456  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       5417 AAATAAATTG

                *          
       5427 ATTTTTTATTAAAAA
          1 ATTTATTATTAAAAA

                           
       5442 ATTTATTATTAAAAA
          1 ATTTATTATTAAAAA

       5457 TTAATGTGGT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (15 bp):   
ATTTATTATTAAAAA
Done.