Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3995

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 365

Length: 609
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37


Found at i:238 original size:20 final size:20

Alignment explanation


    Indices: 201--239  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        191 AAAGTCAAAA

                       * *      
        201 AAATAAAAAATGACAAAATC
          1 AAATAAAAAATAAAAAAATC

                     *         
        221 AAATAAAAATTAAAAAAAT
          1 AAATAAAAAATAAAAAAAT

        240 TCAGCGGGTT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18


Consensus pattern (20 bp):   
AAATAAAAAATAAAAAAATC
Done.