genome.fa.s4376.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold348
Parameters: 2 7 7 80 10 50 1000
Length:  1216543

Tables:   1   2   3   

This is table  2  of  3  ( 360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425661--425749	42	2.1	42	93	0	151	23	14	26	34	1.94
429886--430011	50	2.6	49	81	8	150	24	24	20	30	1.99
432334--432369	17	2.1	17	100	0	72	58	0	5	36	1.22
436604--436640	13	2.9	12	92	8	56	59	10	0	29	1.31
436669--436701	12	2.6	13	90	9	59	63	9	0	27	1.24
443184--443248	18	3.4	18	76	6	58	43	6	18	32	1.75
443423--443453	14	2.2	14	100	0	62	38	12	12	35	1.82
449637--449681	18	2.5	18	82	7	56	37	4	17	40	1.70
450295--450364	34	2.1	34	97	0	131	45	12	8	32	1.73
450899--450943	3	15.0	3	100	0	90	66	0	0	33	0.92
455057--455088	14	2.4	14	94	5	57	37	9	18	34	1.83
467601--467639	17	2.4	17	91	4	62	41	7	25	25	1.82
471888--471957	34	2.1	34	88	0	104	32	32	15	18	1.93
473553--473606	17	3.3	17	65	19	51	51	18	0	29	1.46
473544--473610	32	2.1	32	100	0	134	53	17	0	28	1.44
478271--478339	32	2.1	32	82	12	79	43	0	11	44	1.40
478623--478805	40	4.6	40	81	8	205	20	28	18	32	1.96
478625--478805	79	2.3	80	84	3	233	20	28	17	32	1.96
485346--485384	21	2.0	21	85	10	55	30	23	33	12	1.92
490520--490553	17	2.0	17	88	0	50	73	5	0	20	1.04
504758--504822	33	2.0	33	85	11	89	38	0	23	38	1.55
506920--506953	14	2.5	14	90	4	52	50	32	0	17	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508432--508483	18	2.9	18	79	0	59	11	19	32	36	1.87
515879--516014	71	1.9	71	90	0	218	29	7	27	36	1.84
518058--518115	19	3.1	20	78	11	70	43	18	6	31	1.77
523080--523345	88	3.0	88	100	0	532	40	15	11	32	1.83
523736--523772	15	2.2	17	81	18	51	32	5	16	45	1.70
523738--523786	16	3.2	16	81	16	59	32	8	16	42	1.77
523720--523786	16	4.3	15	77	15	57	34	5	17	41	1.74
525782--525825	20	2.2	20	91	0	70	9	22	27	40	1.84
525793--525839	20	2.3	20	88	0	67	8	25	23	42	1.82
528028--528062	18	2.0	18	88	5	54	40	5	0	54	1.24
530286--530333	24	2.0	23	84	4	60	70	0	2	27	0.98
530287--530325	18	2.2	19	86	9	55	71	0	2	25	0.98
530293--530331	12	3.2	12	82	10	53	66	0	0	33	0.92
532016--532178	87	1.9	87	87	1	238	36	20	13	29	1.91
535846--535897	22	2.4	22	76	0	59	21	17	28	32	1.96
537343--537367	12	2.1	12	100	0	50	48	0	32	20	1.50
538565--538634	19	3.5	21	71	9	56	35	12	10	41	1.77
538728--538911	46	4.0	46	100	0	368	30	28	17	23	1.97
554726--555416	357	1.9	357	85	1	938	31	19	17	31	1.95
558912--558944	16	2.1	16	94	0	57	54	0	0	45	0.99
559795--559828	9	3.9	9	88	7	52	20	2	0	76	0.92
561766--561805	21	1.9	21	94	0	71	15	15	7	62	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562582--562635	17	2.9	18	81	8	65	12	22	42	22	1.87
562849--563086	27	8.8	27	76	9	200	42	20	15	21	1.88
562860--563086	54	4.2	53	86	5	269	43	19	15	21	1.88
562849--563167	81	3.9	79	77	7	230	41	21	16	21	1.90
563012--563181	54	3.1	54	77	1	162	39	24	16	20	1.92
563024--563223	81	2.5	81	82	2	224	38	21	19	21	1.94
563024--563223	27	7.4	27	78	0	141	38	21	19	21	1.94
563250--563350	24	4.2	24	81	5	96	21	7	22	47	1.76
563468--563576	32	3.4	32	76	6	105	20	21	21	37	1.94
563568--563614	22	2.1	22	84	0	58	19	17	17	46	1.84
581723--582182	229	2.0	229	97	0	875	32	20	16	30	1.95
587736--587782	19	2.5	19	89	0	67	46	23	6	23	1.75
602227--602266	9	4.4	9	93	0	62	40	22	10	27	1.86
602500--602531	16	2.0	16	100	0	64	18	0	18	62	1.33
602528--602565	13	2.9	13	96	0	67	15	0	44	39	1.47
604469--604494	12	2.2	12	100	0	52	38	0	15	46	1.46
605723--605753	9	3.4	9	90	0	53	25	12	22	38	1.90
605806--605842	9	4.1	9	85	0	56	43	16	10	29	1.82
605890--605950	30	2.0	31	90	3	97	19	44	0	36	1.51
607638--607685	6	8.0	6	85	0	60	29	29	33	8	1.86
611375--611419	14	3.1	14	78	12	54	77	8	13	0	0.98
613546--613623	27	2.9	27	76	3	86	24	33	21	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613750--613815	28	2.3	29	82	10	84	28	16	7	46	1.74
613927--613988	18	3.1	18	74	24	61	41	0	1	56	1.09
616119--616152	16	2.2	16	89	5	52	29	0	0	70	0.87
617145--617206	24	2.6	23	78	12	63	46	3	6	43	1.45
617284--617308	13	1.9	13	100	0	50	40	8	36	16	1.77
620182--620234	24	2.3	23	84	12	65	58	0	1	39	1.09
625444--625487	13	3.4	13	87	0	61	34	27	15	22	1.95
628640--628731	40	2.3	40	88	0	130	38	14	27	20	1.91
631873--631943	37	1.9	37	97	0	133	39	22	0	38	1.54
639642--639703	26	2.4	26	83	5	72	64	9	6	19	1.45
639640--639936	114	2.6	114	85	6	404	53	16	6	24	1.65
639640--639989	118	3.1	115	82	8	398	50	19	6	24	1.70
640393--640462	22	3.2	22	93	0	122	31	30	0	38	1.58
640434--640492	30	2.0	30	93	0	100	30	35	0	33	1.58
640412--640514	52	2.0	51	86	5	145	33	33	0	33	1.58
640464--640505	22	1.9	22	90	0	66	33	33	0	33	1.58
640703--640736	15	2.3	15	90	5	52	26	0	5	67	1.13
641445--641469	7	3.6	7	100	0	50	28	0	12	60	1.32
642629--642703	18	3.3	23	72	27	70	48	21	0	30	1.51
642641--642684	18	2.4	19	96	3	81	50	20	0	29	1.49
642615--642703	46	1.9	46	93	4	153	49	21	0	29	1.50
644161--644426	122	2.1	125	83	5	335	32	22	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647158--647191	13	2.5	13	85	4	50	26	0	2	70	1.01
650780--650804	11	2.3	11	100	0	50	28	0	0	72	0.86
651163--651203	18	2.3	18	80	12	50	24	0	2	73	0.96
653940--653969	12	2.5	12	94	0	51	60	0	0	40	0.97
662599--662690	19	4.8	19	90	0	148	34	15	11	38	1.84
674144--674193	25	2.0	24	96	3	91	50	6	16	28	1.68
674193--674312	19	6.2	19	89	4	186	36	15	10	38	1.80
674180--674305	40	3.3	37	87	9	173	38	13	8	38	1.76
674193--674311	59	2.0	60	93	1	204	36	14	10	38	1.80
684041--684077	3	12.3	3	100	0	74	32	0	0	67	0.91
693720--693796	19	3.7	21	80	13	68	40	16	6	36	1.75
693720--693777	22	2.6	22	81	7	64	41	17	5	36	1.72
693756--693809	19	2.8	19	97	0	99	35	16	9	38	1.81
704197--704249	19	2.8	20	80	8	65	32	30	18	18	1.96
710300--710360	19	3.1	19	76	11	61	68	0	1	29	0.99
710325--710361	13	2.8	13	91	4	56	64	0	0	35	0.94
710792--710999	81	2.6	81	93	1	346	22	31	21	24	1.98
710792--711024	81	2.9	80	87	7	321	22	30	21	24	1.99
713141--713397	137	1.9	137	82	1	327	24	18	24	32	1.97
713295--713519	123	1.8	123	81	1	281	24	18	26	30	1.98
713420--713816	134	2.9	134	79	5	361	25	18	25	30	1.98
722176--722206	16	1.9	16	93	0	53	35	19	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722259--722343	36	2.3	36	82	8	100	31	22	17	28	1.97
725769--725966	43	4.6	43	75	5	195	36	15	19	28	1.92
725781--725966	86	2.2	86	85	2	241	37	15	18	29	1.91
734574--734672	47	2.1	47	94	0	171	23	28	18	30	1.97
735371--735613	120	2.0	120	93	1	416	30	18	18	32	1.95
745698--745722	8	3.1	8	100	0	50	24	0	0	76	0.80
745893--745921	14	2.1	14	100	0	58	65	6	13	13	1.45
746735--746839	41	2.6	41	87	0	147	20	28	17	33	1.95
758035--758087	26	2.0	26	85	0	70	24	28	9	37	1.86
768891--768915	13	1.9	13	100	0	50	48	12	0	40	1.40

Tables:   1   2   3