Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2727

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 519

Length: 865
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.25

Warning! 199 characters in sequence are not A, C, G, or T


Found at i:166 original size:17 final size:17

Alignment explanation


    Indices: 144--176  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        134 ATACAAAATA

                             
        144 AAAACTTAATGCTACAG
          1 AAAACTTAATGCTACAG

                            
        161 AAAACTTAATGCTACA
          1 AAAACTTAATGCTACA

        177 AAATAAAAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.48, C:0.18, G:0.09, T:0.24


Consensus pattern (17 bp):   
AAAACTTAATGCTACAG
Done.