Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3600

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 427

Length: 713
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42


Found at i:592 original size:5 final size:5

Alignment explanation


    Indices: 582--610  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

        572 TATTTTTCCT

                                              
        582 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
          1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT

        611 TCCTTCTTTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (5 bp):   
TTTTC

Found at i:617 original size:15 final size:16

Alignment explanation


    Indices: 584--624  Score: 50
    Period size: 15  Copynumber: 2.7  Consensus size: 16

        574 TTTTTCCTTT

                           *
        584 TTCTTTTC-TTTTCTT
          1 TTCTTTTCTTTTTCTC

                            
        599 TTCTTTTCTTTTTC-C
          1 TTCTTTTCTTTTTCTC

                  *    
        614 TTCTTTCCTTT
          1 TTCTTTTCTTT

        625 CTCTATTTCG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  15   18  0.78
  16    5  0.22

ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76


Consensus pattern (16 bp):   
TTCTTTTCTTTTTCTC
Done.