Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2442

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 942
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Found at i:180 original size:15 final size:14

Alignment explanation


    Indices: 147--177  Score: 55
    Period size: 14  Copynumber: 2.3  Consensus size: 14

        137 ACGAGATTGT

                          
        147 AAAA-AAAATTCGA
          1 AAAATAAAATTCGA

                          
        160 AAAATAAAATTCGA
          1 AAAATAAAATTCGA

                
        174 AAAA
          1 AAAA

        178 ATATATATAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    4  0.24
  14   13  0.76

ACGTcount: A:0.71, C:0.06, G:0.06, T:0.16


Consensus pattern (14 bp):   
AAAATAAAATTCGA
Done.