Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2180

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34


Found at i:431 original size:39 final size:39

Alignment explanation


    Indices: 372--486  Score: 124
    Period size: 39  Copynumber: 2.9  Consensus size: 39

        362 AATTTAGTTC

                *                                 *
        372 GAGTATTTAATTATGTCATAATTTGAACATCATTAATAT
          1 GAGTTTTTAATTATGTCATAATTTGAACATCATTAATAA

                        *         *    * *         
        411 GAGTTTTTAATTTTGTCATAATCTGAATAACATTAATAA
          1 GAGTTTTTAATTATGTCATAATTTGAACATCATTAATAA

               *                *     *     *     
        450 G-GGTTTTAATTATGTCATAGTTTAGGACATCTTTAAT
          1 GAGTTTTTAATTATGTCATAATTT-GAACATCATTAAT

        487 GCATATTTTA


Statistics
Matches: 61,  Mismatches: 14, Indels: 2
        0.79            0.18        0.03

Matches are distributed among these distances:
  38   18  0.30
  39   43  0.70

ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44


Consensus pattern (39 bp):   
GAGTTTTTAATTATGTCATAATTTGAACATCATTAATAA

Done.