Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4011

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 363

Length: 606
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.23


Found at i:493 original size:6 final size:6

Alignment explanation


    Indices: 470--507  Score: 60
    Period size: 6  Copynumber: 6.3  Consensus size: 6

        460 AGTTGTGGAT

                                                         
        470 GAAGAG GAAGACG G-AGAG GAAGAG GAAGAG GAAGAG GA
          1 GAAGAG GAAGA-G GAAGAG GAAGAG GAAGAG GAAGAG GA

        508 TGATGATGAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   5    2  0.07
   6   26  0.87
   7    2  0.07

ACGTcount: A:0.47, C:0.03, G:0.50, T:0.00


Consensus pattern (6 bp):   
GAAGAG

Done.