Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2778

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 510

Length: 850
ACGTcount: A:0.22, C:0.11, G:0.13, T:0.22

Warning! 274 characters in sequence are not A, C, G, or T


Found at i:122 original size:21 final size:22

Alignment explanation


    Indices: 76--122  Score: 53
    Period size: 21  Copynumber: 2.2  Consensus size: 22

         66 TAGAAGATCA

                      **          
         76 AATGATGAAGCTGATGATAACT
          1 AATGATGAAGAGGATGATAACT

                               *  
         98 -ATGATGAAGAGGATGAT-CCT
          1 AATGATGAAGAGGATGATAACT

                 
        118 AATGA
          1 AATGA

        123 GGCGGACTTG


Statistics
Matches: 21,  Mismatches: 3, Indels: 3
        0.78            0.11        0.11

Matches are distributed among these distances:
  20    2  0.10
  21   19  0.90

ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26


Consensus pattern (22 bp):   
AATGATGAAGAGGATGATAACT
Done.