Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2706

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 522

Length: 870
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.30

Warning! 36 characters in sequence are not A, C, G, or T


Found at i:829 original size:21 final size:21

Alignment explanation


    Indices: 803--863  Score: 77
    Period size: 21  Copynumber: 2.9  Consensus size: 21

        793 TTTTCAAGCT

                         *       
        803 CTCTTTCAATTTCGTTTTCCA
          1 CTCTTTCAATTTCTTTTTCCA

                   **          **
        824 CTCTTTCTTTTTCTTTTTCTT
          1 CTCTTTCAATTTCTTTTTCCA

                               
        845 CTCTTTCAATTTCTTTTTC
          1 CTCTTTCAATTTCTTTTTC

        864 AATCTCT


Statistics
Matches: 33,  Mismatches: 7, Indels: 0
        0.82            0.17        0.00

Matches are distributed among these distances:
  21   33  1.00

ACGTcount: A:0.08, C:0.26, G:0.02, T:0.64


Consensus pattern (21 bp):   
CTCTTTCAATTTCTTTTTCCA
Done.