Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2295

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 599

Length: 999
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25


Found at i:442 original size:19 final size:20

Alignment explanation


    Indices: 402--445  Score: 56
    Period size: 19  Copynumber: 2.3  Consensus size: 20

        392 ATCTCTTTAG

                      *       * 
        402 GCATT-CATTTCATGCATTT
          1 GCATTACATTGCATGCATAT

                                
        421 GCATTACATTGCAT-CATAT
          1 GCATTACATTGCATGCATAT

                  
        440 GCATTA
          1 GCATTA

        446 AACACCTCTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  19   15  0.68
  20    7  0.32

ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41


Consensus pattern (20 bp):   
GCATTACATTGCATGCATAT
Done.