Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3235

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33


Found at i:535 original size:21 final size:21

Alignment explanation


    Indices: 471--540  Score: 69
    Period size: 21  Copynumber: 3.5  Consensus size: 21

        461 AAAATAAGGC

                           *     
        471 AAAAT-AATAGA-GAGTAAAG
          1 AAAATAAATAGATGAATAAAG

                                   
        490 -AAATGAAATA-ATGACATAAA-
          1 AAAAT-AAATAGATGA-ATAAAG

            *                    
        510 TAAATAAATAGATGAATAAAG
          1 AAAATAAATAGATGAATAAAG

                      
        531 AAAATAAATA
          1 AAAATAAATA

        541 AAAAGATAAA


Statistics
Matches: 42,  Mismatches: 2, Indels: 12
        0.75            0.04        0.21

Matches are distributed among these distances:
  18    4  0.10
  19    1  0.02
  20   16  0.38
  21   21  0.50

ACGTcount: A:0.66, C:0.01, G:0.13, T:0.20


Consensus pattern (21 bp):   
AAAATAAATAGATGAATAAAG
Done.