Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1757

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32


Found at i:470 original size:14 final size:15

Alignment explanation


    Indices: 441--471  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        431 AATAGGACAG

                           
        441 TCAAGCACATTTCGA
          1 TCAAGCACATTTCGA

                           
        456 TCAAGCACA-TTCGA
          1 TCAAGCACATTTCGA

              
        470 TC
          1 TC

        472 TAAGTGTTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    7  0.44
  15    9  0.56

ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26


Consensus pattern (15 bp):   
TCAAGCACATTTCGA

Found at i:956 original size:13 final size:13

Alignment explanation


    Indices: 938--963  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        928 ATCAATAATT

                         
        938 TTCAAATCTGCAC
          1 TTCAAATCTGCAC

                         
        951 TTCAAATCTGCAC
          1 TTCAAATCTGCAC

        964 GGGACTCAGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31


Consensus pattern (13 bp):   
TTCAAATCTGCAC
Done.