Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1099

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2808
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:1278 original size:26 final size:26

Alignment explanation


    Indices: 1242--1291  Score: 82
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       1232 AAAATTCATG

                       * *            
       1242 CTAATTAAACTGATATATTGAATGGT
          1 CTAATTAAACTAAAATATTGAATGGT

                                    
       1268 CTAATTAAACTAAAATATTGAATG
          1 CTAATTAAACTAAAATATTGAATG

       1292 TTTGCTTTTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36


Consensus pattern (26 bp):   
CTAATTAAACTAAAATATTGAATGGT
Done.