genome.fa.s494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold495
Parameters: 2 7 7 80 10 50 1000
Length:  208105

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16110--17803	847	2.0	847	99	0	3343	24	30	18	26	1.98
18028--18066	20	2.0	20	85	10	53	38	12	10	38	1.78
25415--25465	24	2.2	22	86	6	66	3	19	0	76	0.94
25415--25480	27	2.6	24	76	17	62	3	19	0	77	0.90
25560--25614	25	2.2	25	86	0	74	3	30	0	65	1.10
26095--26157	29	2.1	31	88	5	94	47	4	14	33	1.65
26104--26173	29	2.4	29	85	2	86	45	2	20	31	1.65
30534--31341	404	2.0	404	99	0	1607	27	18	21	32	1.97
33720--33749	2	14.5	2	93	6	51	46	0	3	50	1.18
36239--36315	26	2.9	26	75	9	75	32	5	20	41	1.75
36341--36379	20	2.1	18	85	9	51	46	5	12	35	1.65
36693--36741	20	2.4	21	82	3	64	61	10	4	24	1.45
42460--42504	20	2.2	20	92	4	72	60	15	11	13	1.60
42460--42540	21	4.0	20	80	4	81	53	9	16	20	1.71
45191--45232	3	14.0	3	94	0	75	30	2	0	66	1.04
57954--58072	44	2.7	43	76	15	127	28	16	23	31	1.96
76302--76392	45	2.0	48	84	6	125	43	21	15	18	1.87
81747--81811	17	3.7	17	75	15	69	47	12	12	27	1.77
81766--81819	17	3.1	17	70	19	56	46	14	12	25	1.81
81751--81819	36	1.9	36	96	0	129	46	13	13	27	1.79
83073--83152	24	3.4	24	78	1	63	47	1	8	42	1.42
83161--83219	23	2.5	25	78	13	70	55	3	5	35	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84563--84616	16	3.4	16	89	0	81	33	0	33	33	1.58
84812--84918	56	1.9	56	84	3	144	49	4	0	45	1.22
85175--85336	77	2.1	77	100	0	324	41	9	7	41	1.66
86229--86271	10	4.4	10	88	2	61	74	11	2	11	1.17
104833--104995	13	12.2	13	68	22	54	24	12	9	53	1.68
104898--104964	23	2.8	23	84	11	82	25	14	10	49	1.76
104897--104995	13	7.9	12	74	15	76	27	12	9	51	1.69
105425--105470	22	2.1	22	91	0	74	39	8	28	23	1.84
111754--111778	5	5.0	5	100	0	50	20	0	0	80	0.72
113185--113334	13	11.2	13	68	21	53	24	12	10	53	1.69
113250--113316	23	2.8	23	84	11	82	25	14	10	49	1.76
113252--113324	12	6.1	12	75	12	69	27	15	9	47	1.76
113249--113347	12	7.8	12	73	17	67	27	13	9	50	1.71
113781--113852	36	2.0	37	81	8	85	22	11	6	59	1.55
125182--125508	41	8.0	41	94	2	550	21	28	19	30	1.98
144625--144754	42	3.1	42	88	2	181	42	18	21	17	1.89
144625--144754	21	6.2	21	69	7	84	42	18	21	17	1.89
144665--144771	21	5.2	20	72	7	79	42	19	19	18	1.90
146653--146871	43	5.1	43	86	0	267	30	29	15	23	1.96
146798--146942	71	2.0	73	97	2	276	24	27	16	31	1.96
146842--146899	28	2.0	30	83	6	75	24	27	13	34	1.93
146872--146951	43	1.9	43	87	5	119	23	30	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151942--152277	114	2.9	114	87	1	494	27	25	19	26	1.99
152249--152303	27	2.0	27	100	0	110	40	32	16	10	1.83
162463--162504	22	1.9	22	85	0	57	69	9	9	11	1.38
163095--163165	28	2.6	28	93	6	119	40	11	0	47	1.39
163224--163299	27	2.8	27	86	4	91	26	27	27	18	1.98
163430--163468	19	2.0	21	85	10	55	23	0	10	66	1.22
163538--163563	3	8.7	3	100	0	52	0	0	30	69	0.89
163674--163843	62	2.7	62	99	0	331	36	1	10	51	1.47
163825--163861	12	3.1	12	92	0	56	21	0	16	62	1.33
169923--169960	19	2.0	19	85	10	51	60	7	0	31	1.25
169996--170044	18	3.0	15	78	18	53	0	30	0	69	0.89
170001--170112	4	27.0	4	73	20	88	0	31	0	68	0.90
169973--170111	30	4.5	31	77	13	105	0	32	0	67	0.91
170008--170111	24	4.6	24	83	15	125	0	32	0	67	0.91
170001--170112	42	2.6	45	82	14	139	0	31	0	68	0.90
170167--170210	18	2.4	18	100	0	88	22	31	22	22	1.98
170263--170337	28	2.7	28	87	4	107	42	1	14	41	1.54
179334--179469	27	5.0	27	93	0	236	16	20	39	23	1.91
179334--179490	27	5.8	27	85	7	203	18	21	37	22	1.94
179334--179490	81	1.9	81	88	5	237	18	21	37	22	1.94
179334--179469	54	2.5	54	98	0	263	16	20	39	23	1.91
179552--179598	18	2.5	20	79	10	62	63	2	34	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179548--179601	22	2.4	23	84	12	76	64	1	33	0	1.04
184154--184273	38	3.2	38	95	0	213	38	2	4	55	1.33
184307--184427	60	2.0	59	84	4	154	53	14	0	30	1.47
184403--184449	21	2.2	22	78	17	55	57	10	0	31	1.33
184489--184727	19	12.5	19	70	21	126	55	11	1	32	1.43
184468--184590	27	5.0	27	75	19	133	53	12	0	33	1.44
184415--184590	48	3.7	49	81	8	220	53	13	1	32	1.47
184543--184624	39	2.0	41	95	4	150	56	14	0	29	1.39
184659--184725	22	3.2	22	85	8	86	59	8	1	29	1.37
184559--184761	102	2.0	100	85	4	273	56	11	1	30	1.44
184885--184924	14	2.6	16	77	22	50	0	42	0	57	0.98
184885--184921	15	2.5	14	91	8	56	0	43	0	56	0.99
185051--185116	27	2.4	27	89	0	105	12	37	22	27	1.90
186711--186749	21	1.9	20	84	5	51	71	5	10	12	1.28
188267--188293	2	13.5	2	100	0	54	48	0	0	51	1.00
188277--188437	84	1.9	85	81	11	197	31	14	8	45	1.76
189131--189160	16	1.9	16	93	6	53	23	6	0	70	1.11
189537--189579	15	2.8	16	75	7	52	23	20	13	41	1.88
190602--190640	2	19.5	2	100	0	78	51	0	0	48	1.00
191100--191233	40	3.5	39	73	17	120	29	20	22	27	1.98
191096--191277	75	2.4	76	77	5	210	29	21	23	25	1.99
197699--197789	35	2.4	35	82	15	103	27	1	3	68	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198237--198276	13	3.1	13	86	10	55	35	7	7	50	1.59
198613--198684	38	2.0	37	86	10	105	50	16	0	33	1.46
201180--201226	22	2.1	21	81	14	51	53	4	8	34	1.51

Tables:   1

The End!