Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4462

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 317

Length: 529
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43


Found at i:523 original size:24 final size:22

Alignment explanation


    Indices: 475--519  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        465 ATATCTAACC

                             *    
        475 ATGATAATTTTATTTATTTATT
          1 ATGATAATTTTATTTATATATT

                                    
        497 ATGATATATTTT-TTGTATATATT
          1 ATGATA-ATTTTATT-TATATATT

        520 TATGCAAAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  22    8  0.40
  23   12  0.60

ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62


Consensus pattern (22 bp):   
ATGATAATTTTATTTATATATT
Done.