Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30015117
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1306243 characters in sequence are not A, C, G, or T
File 12 of 85
Found at i:3829277 original size:105 final size:106
Alignment explanation
Indices: 3829083--3829309 Score: 316
Period size: 106 Copynumber: 2.2 Consensus size: 106
3829073 TAAAAACAAT
* * * *
3829083 CACT-AAATTTTTTTTATTTTTTTCGTATATTGATATCTGATTTTGACATGAAAAAAAAAAGAAG
1 CACTCAAATTTTTTTTATTTTTTTCGTATACTGATATCTGACTCTGACACGAAAAAAAAAAGAAG
* *
3829147 TTTTTTTAAATAGTATTGGGTGCCGGCCATTGACAGGCCAG
66 TTTTTTTAAATAGTACTGGGTGCCGGCCATTGACAGGCCAA
* *
3829188 CACTCAAATTTTTTTT-TATTTTTTCGTATACTGATATTTGACTCTGACACGAAAAAAAATA-AA
1 CACTCAAATTTTTTTTAT-TTTTTTCGTATACTGATATCTGACTCTGACACGAAAAAAAAAAGAA
* *
3829251 TTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAA
65 GTTTTTTTAAATAGTACTGGGTGCCGGCCATTGACAGGCCAA
*
3829293 CACGCAAAATTTTTTTT
1 CACTC-AAATTTTTTTT
3829310 CGTTTTTCTT
Statistics
Matches: 108, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
105 49 0.45
106 59 0.55
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (106 bp):
CACTCAAATTTTTTTTATTTTTTTCGTATACTGATATCTGACTCTGACACGAAAAAAAAAAGAAG
TTTTTTTAAATAGTACTGGGTGCCGGCCATTGACAGGCCAA
Found at i:3829317 original size:105 final size:106
Alignment explanation
Indices: 3829087--3829309 Score: 322
Period size: 105 Copynumber: 2.1 Consensus size: 106
3829077 AACAATCACT
* * * *
3829087 AAATTTTTTTTATTTTTTTCGTATATTGATATCTGATTTTGACATGAAAAAAAAAAGAAGTTTTT
1 AAATTTTTTTTA-TTTTTTCGTATACTGATATCTGACTCTGACACGAAAAAAAAAAGAAGTTTTT
* * *
3829152 TTAAATAGTATTGGGTGCCGGCCATTGACAGGCCAGCACTCA
65 TTAAATAGTACTGGGTGCCGGCCATTGACAGGCCAACACGCA
* * * *
3829194 AATTTTTTTTTATTTTTTCGTATACTGATATTTGACTCTGACACGAAAAAAAATA-AATTTTTTT
1 AAATTTTTTTTATTTTTTCGTATACTGATATCTGACTCTGACACGAAAAAAAAAAGAAGTTTTTT
*
3829258 TAAATTGTACTGGGTGCCGGCCATTGACAGGCCAACACGCA
66 TAAATAGTACTGGGTGCCGGCCATTGACAGGCCAACACGCA
3829299 AAATTTTTTTT
1 AAATTTTTTTT
3829310 CGTTTTTCTT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
105 55 0.53
106 37 0.36
107 11 0.11
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (106 bp):
AAATTTTTTTTATTTTTTCGTATACTGATATCTGACTCTGACACGAAAAAAAAAAGAAGTTTTTT
TAAATAGTACTGGGTGCCGGCCATTGACAGGCCAACACGCA
Found at i:3829323 original size:16 final size:16
Alignment explanation
Indices: 3829302--3829333 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3829292 ACACGCAAAA
3829302 TTTTTTTTCGTTTTTC
1 TTTTTTTTCGTTTTTC
*
3829318 TTTTTTTTCTTTTTTC
1 TTTTTTTTCGTTTTTC
3829334 ATATATCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.84
Consensus pattern (16 bp):
TTTTTTTTCGTTTTTC
Found at i:3841288 original size:42 final size:42
Alignment explanation
Indices: 3841195--3841310 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
3841185 AATATATTTA
* *
3841195 TTTTTTTAATTTTAAAATATTTTTTACATAC--TTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTTAAT
*
3841235 TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTTAAT
*
3841277 TTTTTTTAATTTTAAAATATTTTAAAAATA-TTTT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
3841311 AAAAATACTT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 28 0.41
41 4 0.06
42 37 0.54
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (42 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTTAAT
Found at i:3841298 original size:10 final size:10
Alignment explanation
Indices: 3841285--3841348 Score: 58
Period size: 11 Copynumber: 6.1 Consensus size: 10
3841275 ATTTTTTTTA
3841285 ATTTTAAAAT
1 ATTTTAAAAT
3841295 ATTTTAAAAAT
1 ATTTT-AAAAT
3841306 ATTTTAAAAAT
1 ATTTT-AAAAT
**
3841317 ACTTTTTTTAAT
1 A--TTTTAAAAT
*
3841329 TTTTTAAAAT
1 ATTTTAAAAT
3841339 -TTTTAAAAT
1 ATTTTAAAAT
3841348 A
1 A
3841349 AAAATGNNNN
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
9 9 0.20
10 12 0.27
11 17 0.38
12 3 0.07
13 4 0.09
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:3841299 original size:52 final size:53
Alignment explanation
Indices: 3841226--3841348 Score: 171
Period size: 52 Copynumber: 2.4 Consensus size: 53
3841216 TTTTACATAC
** *
3841226 TTTTTTAATTTTTTTAA-ATTTT-AAAATATTTTTAAAATACTTTTTTTTAATT
1 TTTTTTAATTTTTAAAATATTTTAAAAATATTTTAAAAATAC-TTTTTTTAATT
3841278 TTTTTTAA-TTTTAAAATATTTTAAAAATATTTTAAAAATACTTTTTTTAATT
1 TTTTTTAATTTTTAAAATATTTTAAAAATATTTTAAAAATACTTTTTTTAATT
**
3841330 TTTTAAAATTTTTAAAATA
1 TTTTTTAATTTTTAAAATA
3841349 AAAATGNNNN
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
51 6 0.10
52 30 0.48
53 27 0.43
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (53 bp):
TTTTTTAATTTTTAAAATATTTTAAAAATATTTTAAAAATACTTTTTTTAATT
Found at i:3841323 original size:42 final size:40
Alignment explanation
Indices: 3841195--3841346 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 40
3841185 AATATATTTA
** *
3841195 TTTTTTTAATTTTAAAATATTTTTTACATACTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTAAAAATACTTTTTTAAT
* *
3841235 TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTAAAAATAC--TTTTTTAAT
**
3841277 TTTTTTTAATTTTAAAATATTTTAAAAATA-TTTTAAAAAT
1 TTTTTTTAATTTTAAAATATTTTAAAAATACTTTT-TTAAT
3841317 ACTTTTTTTAATTTTTTAAAAT-TTTTAAAA
1 --TTTTTTTAA--TTTTAAAATATTTTAAAA
3841347 TAAAAATGNN
Statistics
Matches: 98, Mismatches: 7, Indels: 11
0.84 0.06 0.09
Matches are distributed among these distances:
39 4 0.04
40 31 0.32
42 46 0.47
43 8 0.08
44 9 0.09
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (40 bp):
TTTTTTTAATTTTAAAATATTTTAAAAATACTTTTTTAAT
Found at i:3842413 original size:32 final size:31
Alignment explanation
Indices: 3842343--3842423 Score: 76
Period size: 32 Copynumber: 2.5 Consensus size: 31
3842333 CTTTACCCTA
*
3842343 TTTT-AAATGAAAACATAAAAATTAAATAAAAC
1 TTTTAAAAT-AAAA-ATAAAAATTAAAAAAAAC
3842375 TCTTTAAAATAAAAATAAAAA-TAAAAAAAATC
1 T-TTTAAAATAAAAATAAAAATTAAAAAAAA-C
3842407 GTTTTAAATATATAAAA
1 -TTTTAAA-ATA-AAAA
3842424 AATTTCAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
31 8 0.19
32 15 0.36
33 11 0.26
34 8 0.19
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (31 bp):
TTTTAAAATAAAAATAAAAATTAAAAAAAAC
Found at i:3849725 original size:22 final size:21
Alignment explanation
Indices: 3849639--3849725 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 21
3849629 AAATCAAAGT
*
3849639 CAAAATGAAAATGAAAAAAAT
1 CAAAATGAAAATGAAAAAAAA
*
3849660 CAAAAATCAAAAT-AAAAAAAA
1 C-AAAATGAAAATGAAAAAAAA
* *
3849681 CAAAAAGAAGAAAGAAGAAAAAA
1 CAAAATGAA-AATGAA-AAAAAA
3849704 CAAAATGAAAATGAAAATAAAA
1 CAAAATGAAAATGAAAA-AAAA
3849726 ATGAGAAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
20 6 0.11
21 13 0.24
22 21 0.39
23 14 0.26
ACGTcount: A:0.76, C:0.06, G:0.09, T:0.09
Consensus pattern (21 bp):
CAAAATGAAAATGAAAAAAAA
Found at i:3851660 original size:41 final size:40
Alignment explanation
Indices: 3851608--3851730 Score: 99
Period size: 40 Copynumber: 3.0 Consensus size: 40
3851598 GCAGATCGAA
*
3851608 AAAGCCTTGCCTTCATTGGTTGCAGTAGAGCTGGTTAAAG
1 AAAGCCGTGCCTTCATTGGTTGCAGTAGAGCTGGTTAAAG
* * * * * * *
3851648 AAAGATCGTGCCTTC-CTGCGTTAACAG-CGAAGCAGATCAAA-
1 AAAG-CCGTGCCTTCATTG-GTT-GCAGTAG-AGCTGGTTAAAG
* *
3851689 AAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAG
1 AAAGCCGTGCCTTCATTGGTTGCAGTAGAGCTGGTTAAAG
3851729 AA
1 AA
3851731 GCAAATCTTG
Statistics
Matches: 60, Mismatches: 16, Indels: 14
0.67 0.18 0.16
Matches are distributed among these distances:
39 11 0.18
40 20 0.33
41 18 0.30
42 11 0.18
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
AAAGCCGTGCCTTCATTGGTTGCAGTAGAGCTGGTTAAAG
Found at i:3851805 original size:85 final size:84
Alignment explanation
Indices: 3851430--3851944 Score: 618
Period size: 81 Copynumber: 6.1 Consensus size: 84
3851420 AGATCAGTGA
* * * *
3851430 AGATCGAAAACAAAGTCTTGCCTCCATTGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATATTGC
1 AGATCGAAAAC-AAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGA-A-CAGATCTTGC
* *
3851495 CTTCCTGCGTTAACAGCTAAGC
63 CTTCCTGCATTAACAGCGAAGC
* * *
3851517 AGATCGAAAAAAAGCCTTGCCTTCATTGGGTGCAGTGGAGCTGGTTAAAGAA-AGATCTTACCTT
1 AGATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAACAGATCTTGCCTT
*
3851581 CCTGCGTTAACAGCGAAGC
66 CCTGCATTAACAGCGAAGC
* *
3851600 AGATCG-AAA-AAGCCTTGCCTTCATTGGTTGCAGTAGAGCTGGTTAAAGAA-AGATCGTGCCTT
1 AGATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAACAGATCTTGCCTT
*
3851662 CCTGCGTTAACAGCGAAGC
66 CCTGCATTAACAGCGAAGC
*
3851681 AGATC-AAAA-AAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAAATCTTGCCT
1 AGATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAA-CAGATCTTGCCT
3851744 TCCTGCATTAACAGCGAAGC
65 TCCTGCATTAACAGCGAAGC
*
3851764 AGATCGAAAACAAGCCTTGCCTTCATTGGTTAG-AGTGGAGCTGGTTAAAGAAGCAGATCTTGTC
1 AGATCGAAAACAAGCCTTGCCTTCATTGGTT-GCAGTGGAGCTGGTTAAAGAA-CAGATCTTGCC
*
3851828 TTCCTGCATTGACAGCGAAGC
64 TTCCTGCATTAACAGCGAAGC
* * * * *
3851849 AGGTCGAAGACACAAACCTTG-CTTC-TCTCGGTTG-TGATGGAGCTGGTTGAAGACAAAAGATC
1 AGATCGAA-A-ACAAGCCTTGCCTTCAT-T-GGTTGCAG-TGGAGCTGGTT-AA-AGAACAGATC
* * *
3851911 TTGCCTTCCAGCATTGACAGTGAAGC
59 TTGCCTTCCTGCATTAACAGCGAAGC
*
3851937 ATATCGAA
1 AGATCGAA
3851945 GACACATACC
Statistics
Matches: 386, Mismatches: 29, Indels: 25
0.88 0.07 0.06
Matches are distributed among these distances:
81 116 0.30
82 3 0.01
83 67 0.17
84 4 0.01
85 78 0.20
86 45 0.12
87 34 0.09
88 36 0.09
89 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (84 bp):
AGATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAACAGATCTTGCCTT
CCTGCATTAACAGCGAAGC
Found at i:3851925 original size:88 final size:87
Alignment explanation
Indices: 3851458--3852004 Score: 375
Period size: 81 Copynumber: 6.4 Consensus size: 87
3851448 TGCCTCCATT
** * * * *
3851458 GGTTGT-AGTGGAGCTGGTTAAAGATAGCAGATATTGCCTTCCTGCGTTAACAGCTAAGCAGATC
1 GGTTGTGA-TGGAGCTGGTTAAAGA-AAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC
3851522 GAA-A-A-AAAGCCTTGCCTTCAT-T-
64 GAAGACACAAA-CCTTG-CTTC-TCTC
* * *
3851544 GG--GTGCAGTGGAGCTGGTTAAAG--AAAGATCTTACCTTCCTGCGTTAACAGCGAAGCAGATC
1 GGTTGTG-A-TGGAGCTGGTTAAAGAAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC
*
3851605 G-A-A-A-AAGCCTTGCCTTCAT-T-
64 GAAGACACAAACCTTG-CTTC-TCTC
* * * * *
3851625 GGTTG-CAGTAGAGCTGGTTAAAG--AAAGATCGTGCCTTCCTGCGTTAACAGCGAAGCAGATC-
1 GGTTGTGA-TGGAGCTGGTTAAAGAAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG
*
3851686 AA-A-A-AAGCCTTGCCTTCAT-T-
65 AAGACACAAACCTTG-CTTC-TCTC
* * *
3851706 GGTTG-CAGTGGAGCTGGTTAAAGAAGCAA-ATCTTGCCTTCCTGCATTAACAGCGAAGCAGATC
1 GGTTGTGA-TGGAGCTGGTTAAAGAA-AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC
*
3851769 GAA-A-ACAAGCCTTGCCTTCAT-T-
64 GAAGACACAAACCTTG-CTTC-TCTC
* ** * *
3851791 GGTT-AGAGTGGAGCTGGTTAAAGAAGCAGATCTTGTCTTCCTGCATTGACAGCGAAGCAGGTCG
1 GGTTGTGA-TGGAGCTGGTTAAAGAAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG
3851855 AAGACACAAACCTTGCTTCTCTC
65 AAGACACAAACCTTGCTTCTCTC
* * * *
3851878 GGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCAGCATTGACAGTGAAGCATATCG
1 GGTTGTGATGGAGCTGGTTAAAGA-AAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG
* * *
3851943 AAGACACATACCTTGCCTCCCTC
65 AAGACACAAACCTTGCTTCTCTC
* * * *
3851966 AGTTGTGATAGAGCTGGTTGAAGACAACAGATCTTGCCT
1 GGTTGTGATGGAGCTGGTTAAAGA-AAAAGATCTTGCCT
3852005 CCTATCTCCC
Statistics
Matches: 407, Mismatches: 36, Indels: 34
0.85 0.08 0.07
Matches are distributed among these distances:
81 108 0.27
82 5 0.01
83 67 0.16
84 9 0.02
85 74 0.18
86 25 0.06
87 28 0.07
88 91 0.22
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (87 bp):
GGTTGTGATGGAGCTGGTTAAAGAAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
AGACACAAACCTTGCTTCTCTC
Found at i:3852070 original size:44 final size:43
Alignment explanation
Indices: 3852007--3852198 Score: 133
Period size: 44 Copynumber: 4.4 Consensus size: 43
3851997 TCTTGCCTCC
* * *
3852007 TATCTCCCTGATA-TTACAGTGGAGCGGATTAAAACTAAGGATCT
1 TATCTCTCTGA-AGTTACAGTGGAGCAGATT-AAAGTAAGGATCT
* * *** *
3852051 TATCTCTCTGAAGTTACAGTAGAGTAGA-TCGTGTCA-GATCT
1 TATCTCTCTGAAGTTACAGTGGAGCAGATTAAAGTAAGGATCT
* * * * *
3852092 TATCTCTCTG-AGATTACAGCGGAGCAGATTGAAGTTAGTAATCC
1 TATCTCTCTGAAG-TTACAGTGGAGCAGATTAAAGTAAG-GATCT
* ** *
3852136 TATCTCCCTG-AGATTACAGTGGAGTGGATTAAAATGAAGGATCT
1 TATCTCTCTGAAG-TTACAGTGGAGCAGATTAAAGT-AAGGATCT
3852180 TATCTCTCTGAAGTTACAG
1 TATCTCTCTGAAGTTACAG
3852199 CAGAGTAGAT
Statistics
Matches: 113, Mismatches: 28, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
40 2 0.02
41 27 0.24
42 6 0.05
43 2 0.02
44 72 0.64
45 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
TATCTCTCTGAAGTTACAGTGGAGCAGATTAAAGTAAGGATCT
Found at i:3852234 original size:129 final size:129
Alignment explanation
Indices: 3852004--3852296 Score: 385
Period size: 129 Copynumber: 2.3 Consensus size: 129
3851994 AGATCTTGCC
*
3852004 TCCTATCTCCCTGATATTACAGTGGAGCGGATTAAAACTAAGGATCTTATCTCTCTGAAGTTACA
1 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACTAAGGATCTTATCTCTCTGAAGTTACA
* ** * *
3852069 GTAGAGTAGATCGTGTCAGATCTTATCTCTCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAA
66 GCAGAGTAGATCACGTCAGATCTTATCTCACTGAGATTACAGCGGAACAGATTGAAGTTAGTAA
*
3852133 TCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAA-TGAAGGATCTTATCTCTCTGAAGTTAC
1 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACT-AAGGATCTTATCTCTCTGAAGTTAC
* * * **
3852197 AGCAGAGTAGATCACGTCAGGTCTTATTTCACTGAGATTACAGTGGAACAGACCGAAGAATT--T
65 AGCAGAGTAGATCACGTCAGATCTTATCTCACTGAGATTACAGCGGAACAGATTGAAG--TTAGT
3852260 CAGA
128 -A-A
* * *
3852264 TCTTATCTCCCTGAGATTACAGCGGAGCAGATT
1 TCCTATCTCCCTGAGATTACAGTGGAGCGGATT
3852297 GAAGCTAATA
Statistics
Matches: 143, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
128 1 0.01
129 109 0.76
130 1 0.01
131 32 0.22
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (129 bp):
TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACTAAGGATCTTATCTCTCTGAAGTTACA
GCAGAGTAGATCACGTCAGATCTTATCTCACTGAGATTACAGCGGAACAGATTGAAGTTAGTAA
Found at i:3867216 original size:16 final size:17
Alignment explanation
Indices: 3867185--3867265 Score: 73
Period size: 16 Copynumber: 4.8 Consensus size: 17
3867175 TTAAAAAATA
3867185 ATATAAATCATT--TTAT
1 ATATAAAT-ATTAATTAT
*
3867201 ATCTAAAT-TTAATTAT
1 ATATAAATATTAATTAT
*
3867217 AATATTAATATTAATT-T
1 -ATATAAATATTAATTAT
3867234 ATATAAATATTAATT-T
1 ATATAAATATTAATTAT
3867250 ATAATCAAATATTAAT
1 AT-AT-AAATATTAAT
3867266 ATAAACTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
14 2 0.04
16 28 0.51
17 9 0.16
18 16 0.29
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATAAATATTAATTAT
Found at i:3867268 original size:16 final size:15
Alignment explanation
Indices: 3867204--3867269 Score: 53
Period size: 18 Copynumber: 4.0 Consensus size: 15
3867194 ATTTTATATC
3867204 TAAAT-TTAATTATAA
1 TAAATATTAA-TATAA
*
3867219 TATTAATATTAATTTATA
1 TA--AATATTAATATA-A
3867237 TAAATATTAATTTATAA
1 TAAATATTAA--TATAA
3867254 TCAAATATTAATATAA
1 T-AAATATTAATATAA
3867270 ACTTTTAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
15 2 0.05
16 13 0.31
17 8 0.19
18 19 0.45
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TAAATATTAATATAA
Found at i:3867525 original size:23 final size:23
Alignment explanation
Indices: 3867495--3867545 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
3867485 TACCCTAGCT
*
3867495 AATTTTATTGGTCGATATGGTCC
1 AATTTTATTGGTCGAAATGGTCC
*
3867518 AATTTTATTGGTCGAAATTGTCC
1 AATTTTATTGGTCGAAATGGTCC
3867541 AATTT
1 AATTT
3867546 AGACAGCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (23 bp):
AATTTTATTGGTCGAAATGGTCC
Found at i:3890873 original size:26 final size:26
Alignment explanation
Indices: 3890837--3890889 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3890827 GAACATTATT
3890837 GCACCATTGGCACATTTTAGGCATCA
1 GCACCATTGGCACATTTTAGGCATCA
3890863 GCACCATTGGCACATTTTAGGCATCA
1 GCACCATTGGCACATTTTAGGCATCA
3890889 G
1 G
3890890 TTAAGGACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCACCATTGGCACATTTTAGGCATCA
Found at i:3892747 original size:28 final size:29
Alignment explanation
Indices: 3892681--3892780 Score: 77
Period size: 29 Copynumber: 3.6 Consensus size: 29
3892671 ACCTTTTAAA
* *
3892681 TAAT-TAATATAA-ATTATTT-ATAAAAT
1 TAATATAATAAAATATTATTTAATAAATT
*
3892707 TGATGATATATAAAATATTA-TTAA-AAATT
1 TAAT-ATA-ATAAAATATTATTTAATAAATT
* *
3892736 TAAATATAAT-AAATAATATTTAATTAATT
1 T-AATATAATAAAATATTATTTAATAAATT
*
3892765 TAATATAATAATATAT
1 TAATATAATAAAATAT
3892781 AAAATATAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
26 3 0.05
27 7 0.12
28 16 0.28
29 24 0.42
30 7 0.12
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
TAATATAATAAAATATTATTTAATAAATT
Found at i:3895354 original size:28 final size:28
Alignment explanation
Indices: 3895301--3895356 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
3895291 AAAAAAGGGT
* * *
3895301 TAAATTCTACTGCTTTTTTTTTTTTAAC
1 TAAATTCTACTGCTTGTCTTTGTTTAAC
3895329 TAAATTCTACTG-TTAGTCTTTGTTTAAC
1 TAAATTCTACTGCTT-GTCTTTGTTTAAC
3895357 CTAATTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (28 bp):
TAAATTCTACTGCTTGTCTTTGTTTAAC
Found at i:3896812 original size:31 final size:31
Alignment explanation
Indices: 3896777--3896844 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
3896767 AAAATAGCCT
3896777 AATGACTTAAATAAAAACTTTCGAATAGTTC
1 AATGACTTAAATAAAAACTTTCGAATAGTTC
* * * *
3896808 AATGACTTGAATTAAAATTTTTGAATAGTTC
1 AATGACTTAAATAAAAACTTTCGAATAGTTC
3896839 AATGAC
1 AATGAC
3896845 CATTTTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (31 bp):
AATGACTTAAATAAAAACTTTCGAATAGTTC
Found at i:3900802 original size:1 final size:1
Alignment explanation
Indices: 3900796--3900820 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
3900786 GAGCATGGAA
3900796 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
3900821 CCTGCCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:3910873 original size:149 final size:149
Alignment explanation
Indices: 3910603--3910908 Score: 594
Period size: 149 Copynumber: 2.1 Consensus size: 149
3910593 TTATATATTT
*
3910603 GACATTCATTCTTTAACCTTAAGAGCTGTAAATCAGGATATTTTCTTTTTATGGAAGCCATTTTC
1 GACATTCATTCTTTAACCTTAAGAGCTGTAAATCAGGATATTTTCTTTTTATAGAAGCCATTTTC
3910668 GGATCATTCTTTTCAATGAATAAGAACTAGTTCATTAGTTGATTCTGCATAAACCAGATTTATGG
66 GGATCATTCTTTTCAATGAATAAGAACTAGTTCATTAGTTGATTCTGCATAAACCAGATTTATGG
3910733 GAAATTTGAGGGTTTCAAA
131 GAAATTTGAGGGTTTCAAA
3910752 GACATTCATTCTTTAACCTTAAGAGCTGTAAATCAGGATATTTTCTTTTTATAGAAGCCATTTTC
1 GACATTCATTCTTTAACCTTAAGAGCTGTAAATCAGGATATTTTCTTTTTATAGAAGCCATTTTC
3910817 GGATCATTCTTTTCAATGAATAAGAACTAGTTCATTAGTTGATTCTGCATAAACCAGATTTATGG
66 GGATCATTCTTTTCAATGAATAAGAACTAGTTCATTAGTTGATTCTGCATAAACCAGATTTATGG
3910882 GAAATTTGAGGGTTTCAAA
131 GAAATTTGAGGGTTTCAAA
*
3910901 GAGATTCA
1 GACATTCA
3910909 AGCATTTATG
Statistics
Matches: 155, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 155 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (149 bp):
GACATTCATTCTTTAACCTTAAGAGCTGTAAATCAGGATATTTTCTTTTTATAGAAGCCATTTTC
GGATCATTCTTTTCAATGAATAAGAACTAGTTCATTAGTTGATTCTGCATAAACCAGATTTATGG
GAAATTTGAGGGTTTCAAA
Found at i:3911395 original size:3 final size:3
Alignment explanation
Indices: 3911387--3911414 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
3911377 TTCATCTTCA
3911387 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
3911415 CAAGAGTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:3919438 original size:31 final size:31
Alignment explanation
Indices: 3919403--3919463 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
3919393 TATTTCTTTA
* *
3919403 AATGTATACAACTGAATCAAAATTAAAGTTT
1 AATGTATACAACTGAACCAAAAATAAAGTTT
* **
3919434 AATGTGTACATTTGAACCAAAAATAAAGTT
1 AATGTATACAACTGAACCAAAAATAAAGTT
3919464 CCGAGTATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.31
Consensus pattern (31 bp):
AATGTATACAACTGAACCAAAAATAAAGTTT
Found at i:3922127 original size:18 final size:19
Alignment explanation
Indices: 3922091--3922128 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
3922081 TTTTAATTTC
*
3922091 TATTCCTGAATACTTTGTT
1 TATTCATGAATACTTTGTT
3922110 TATTCATGAATA-TTTGTT
1 TATTCATGAATACTTTGTT
3922128 T
1 T
3922129 CCTTGAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.55
Consensus pattern (19 bp):
TATTCATGAATACTTTGTT
Found at i:3923457 original size:11 final size:11
Alignment explanation
Indices: 3923423--3923455 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
3923413 CGGCTTGCTC
3923423 ATATTAATTTTT
1 ATATT-ATTTTT
3923435 ATATTATTTTT
1 ATATTATTTTT
3923446 ATA-TATTTTT
1 ATATTATTTTT
3923456 TAACAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 7 0.33
11 9 0.43
12 5 0.24
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
ATATTATTTTT
Found at i:3923573 original size:30 final size:30
Alignment explanation
Indices: 3923528--3923586 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
3923518 TTTAACAAGT
*
3923528 AAATGCCTCTAAAATAACAACAAAATTAAC
1 AAATACCTCTAAAATAACAACAAAATTAAC
* *
3923558 AAATACCTTTAAAATAATAACAAAATTAA
1 AAATACCTCTAAAATAACAACAAAATTAA
3923587 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.15, G:0.02, T:0.24
Consensus pattern (30 bp):
AAATACCTCTAAAATAACAACAAAATTAAC
Found at i:3931515 original size:17 final size:17
Alignment explanation
Indices: 3931493--3931525 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3931483 TCGTTGGATT
3931493 TTAATATAATA-TAAATA
1 TTAATA-AATACTAAATA
3931510 TTAATAAATACTAAAT
1 TTAATAAATACTAAAT
3931526 GACAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAATAAATACTAAATA
Found at i:3937498 original size:16 final size:16
Alignment explanation
Indices: 3937461--3937500 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
3937451 TAAATAAAAT
* *
3937461 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
3937477 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
3937493 TAAAATTA
1 TAAAATTA
3937501 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:3937586 original size:9 final size:9
Alignment explanation
Indices: 3937573--3937606 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
3937563 CTTATCAAAT
*
3937573 TATTAATTT
1 TATTAATTG
3937582 TATTAATTG
1 TATTAATTG
3937591 TATTAATTG
1 TATTAATTG
3937600 TATTAAT
1 TATTAAT
3937607 CTTAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (9 bp):
TATTAATTG
Found at i:3937625 original size:22 final size:25
Alignment explanation
Indices: 3937600--3937649 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
3937590 GTATTAATTG
3937600 TATTA-ATCTT-AAAATAAAAAA-A
1 TATTATATCTTAAAAATAAAAAATA
*
3937622 TATTATATTTTAAAAATAAAAAATA
1 TATTATATCTTAAAAATAAAAAATA
3937647 TAT
1 TAT
3937650 ATTTAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 4 0.17
24 11 0.46
25 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
TATTATATCTTAAAAATAAAAAATA
Found at i:3937635 original size:23 final size:23
Alignment explanation
Indices: 3937610--3937653 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
3937600 TATTAATCTT
3937610 AAAATAAAAAAATATTATATTTTA
1 AAAAT-AAAAAATATTATATTTTA
3937634 AAAATAAAAAATA-TATATTT
1 AAAATAAAAAATATTATATTT
3937654 AATTTTTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAATAAAAAATATTATATTTTA
Found at i:3940851 original size:57 final size:59
Alignment explanation
Indices: 3940737--3940879 Score: 166
Period size: 57 Copynumber: 2.4 Consensus size: 59
3940727 AATTGACAGT
*
3940737 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTAATATAGCCCTCCCGAAGAATATGCGTG
1 AAAAA-GATCTAGCCCGGACGGGTGATCC-AT-CTAATATAACCCTCCCGAAGAATATGCG-G
* * *
3940800 AAAAAGATCTAGCCCGAACGGGTGAT-C-T-TGATATAACCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCCGGACGGGTGATCCATCTAATATAACCCTCCCGAAGAATATGCGG
* *
3940856 AAAATGGATTTAGCCCGGACGGGT
1 AAAA-AGATCTAGCCCGGACGGGT
3940880 AATTCGAATT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
56 5 0.07
57 40 0.56
59 1 0.01
61 1 0.01
62 20 0.28
63 5 0.07
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.21
Consensus pattern (59 bp):
AAAAAGATCTAGCCCGGACGGGTGATCCATCTAATATAACCCTCCCGAAGAATATGCGG
Found at i:3941146 original size:185 final size:185
Alignment explanation
Indices: 3940834--3941166 Score: 580
Period size: 185 Copynumber: 1.8 Consensus size: 185
3940824 ATCTTGATAT
3940834 AACCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGACGGGTAATTCGAATTAGGGTCTAA
1 AACCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGACGGGTAATTCGAATTAGGGTCTAA
* * *
3940899 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGGGATTTAG
66 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTATCATTACAGGGGATTTAG
3940964 CCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGC
131 CCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGC
3941019 AACCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGACGGGTAATTCGAATTAGGGTCTAA
1 AACCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGACGGGTAATTCGAATTAGGGTCTAA
** *
3941084 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATCTCTA-TGAGTTAT-ATTACAGGGGATTT
66 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCAT-TAGAGT-AATTATCATTACAGGGGATTT
3941147 AGCCTGGACTGGTAATCCCG
129 AGCCTGGACTGGTAATCCCG
3941167 CTGTAATAAA
Statistics
Matches: 140, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
185 134 0.96
186 6 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (185 bp):
AACCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGACGGGTAATTCGAATTAGGGTCTAA
ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTATCATTACAGGGGATTTAG
CCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGC
Found at i:3942500 original size:26 final size:23
Alignment explanation
Indices: 3942470--3942550 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 23
3942460 GGACTCACCA
3942470 CAGCTCGTATGAGCTTACTGATATAT
1 CAGCTCGTATGAGCTTACTG-T-T-T
* *
3942496 CAGCTCTTATGAGCTTACCGTTT
1 CAGCTCGTATGAGCTTACTGTTT
3942519 CAGCTCG-ATAGAGCTTACTGTTCTT
1 CAGCTCGTAT-GAGCTTACTG-T-TT
3942544 CAGCTCG
1 CAGCTCG
3942551 AAATGAGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 2 0.04
23 16 0.33
24 2 0.04
25 10 0.21
26 18 0.38
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGTTT
Found at i:3942532 original size:23 final size:25
Alignment explanation
Indices: 3942506--3942551 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
3942496 CAGCTCTTAT
3942506 GAGCTTACCG-T-TTCAGCTCGATA
1 GAGCTTACCGTTCTTCAGCTCGATA
*
3942529 GAGCTTACTGTTCTTCAGCTCGA
1 GAGCTTACCGTTCTTCAGCTCGA
3942552 AATGAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCTTACCGTTCTTCAGCTCGATA
Found at i:3942557 original size:49 final size:49
Alignment explanation
Indices: 3942470--3942563 Score: 111
Period size: 49 Copynumber: 1.9 Consensus size: 49
3942460 GGACTCACCA
**
3942470 CAGCTCGTATGAGCTTACTGATATATCAGCTCTTATGAGCTTACCGTTT
1 CAGCTCGTATGAGCTTACTGATATATCAGCTCAAATGAGCTTACCGTTT
* * *
3942519 CAGCTCG-ATAGAGCTTACTGTTCT-TCAGCTCGAAATGAGTTTACC
1 CAGCTCGTAT-GAGCTTACTGATATATCAGCTC-AAATGAGCTTACC
3942564 AATCATGGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 9 0.24
49 29 0.76
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (49 bp):
CAGCTCGTATGAGCTTACTGATATATCAGCTCAAATGAGCTTACCGTTT
Found at i:3947536 original size:2 final size:2
Alignment explanation
Indices: 3947529--3947553 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3947519 TGATCGGCCA
3947529 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
3947554 CTTTTATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3961199 original size:145 final size:149
Alignment explanation
Indices: 3960981--3961366 Score: 523
Period size: 151 Copynumber: 2.6 Consensus size: 149
3960971 TCAATCTCAA
* *
3960981 ATTTGAGT-AAAATATAGGGACCAAAACTGAAATTCAAACATAAAAAAATTAGAGGGATTA-AGA
1 ATTTGAGTGAAAA-ATAGGGATCAAAACTGAAATTTAAACAT--AAAAATTAGAGGGATTAGA-A
* *
3961044 TTGAAATTTAGCCATTATCTTGTCATTT-AAAAG-AA-AG-AGAAAACGTTAGACATGTGTCATG
62 TTGAAATTTAGCCATTATCTTATCATTTAAAAAGAAAGAGAAGAAAACATTAGACATGTGTCATG
*
3961105 TAGGGAAGGCCTTACGGCTATAG
127 TAAGGAAGGCCTTACGGCTATAG
* * *
3961128 ATTTGAGTGAAAAATAGGGATCAAAATTGAAATTTGATCATAAAAATTAGAGGGATTAGAATTGA
1 ATTTGAGTGAAAAATAGGGATCAAAACTGAAATTTAAACATAAAAATTAGAGGGATTAGAATTGA
* *
3961193 AATTTAGCCATTGTCTTATCATTTTAAAAAGAAAAGAGAAGAAAACATTGGACATGTGTCATGTA
66 AATTTAGCCATTATCTTATCA-TTTAAAAAG-AAAGAGAAGAAAACATTAGACATGTGTCATGTA
*
3961258 AGGAAGGCCTTAGGGCTATAG
129 AGGAAGGCCTTACGGCTATAG
** * *
3961279 ATTTGAGTGAAATGTAGGGATCAGAACTGAAATTTAACCATAAAAATTAGAGGGATTAGAATTGA
1 ATTTGAGTGAAAAATAGGGATCAAAACTGAAATTTAAACATAAAAATTAGAGGGATTAGAATTGA
*
3961344 AATTTAGCCATTATTCTTCTCAT
66 AATTTAGCCATTA-TCTTATCAT
3961367 GTGAAAAAAA
Statistics
Matches: 211, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
145 41 0.19
146 4 0.02
147 36 0.17
148 4 0.02
149 2 0.01
150 2 0.01
151 115 0.55
152 7 0.03
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (149 bp):
ATTTGAGTGAAAAATAGGGATCAAAACTGAAATTTAAACATAAAAATTAGAGGGATTAGAATTGA
AATTTAGCCATTATCTTATCATTTAAAAAGAAAGAGAAGAAAACATTAGACATGTGTCATGTAAG
GAAGGCCTTACGGCTATAG
Found at i:3964215 original size:34 final size:34
Alignment explanation
Indices: 3964177--3964243 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
3964167 ACACATCAGT
*
3964177 TGCTATAATCATCAAATGGCTATGGATGTGAGGC
1 TGCTATAATCATCAAATGGCTATGGATCTGAGGC
3964211 TGCTATAATCATCAAATGGCTATGGATCTGAGG
1 TGCTATAATCATCAAATGGCTATGGATCTGAGG
3964244 GTTAGTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (34 bp):
TGCTATAATCATCAAATGGCTATGGATCTGAGGC
Found at i:3968653 original size:21 final size:21
Alignment explanation
Indices: 3968624--3968663 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3968614 AATATATATG
*
3968624 TCTATAAAA-ATATATAAATAA
1 TCTAAAAAACATATA-AAATAA
3968645 TCTAAAAAACATATAAAAT
1 TCTAAAAAACATATAAAAT
3968664 CTAATTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
TCTAAAAAACATATAAAATAA
Found at i:3973130 original size:51 final size:51
Alignment explanation
Indices: 3973013--3973192 Score: 152
Period size: 51 Copynumber: 3.5 Consensus size: 51
3973003 GATGGTCGTG
* * * * * * * *
3973013 TGTGTAGTATTATGTGCAAGCTACTACGTGTACC-GA-AATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTAAT-GATCACA
* * * *
3973063 TATGTAGTACTATGTGCAGGCTACTATGCGTGCC-GAATAGT-TTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAG-ATAGTAAT-GATCACA
* * * * *
3973114 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTAATGATCACA
3973165 TGTGTAGTACTATGTGCAGGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
3973193 TGAACCGAAC
Statistics
Matches: 104, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
50 29 0.28
51 71 0.68
52 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTAATGATCACA
Found at i:3973194 original size:26 final size:26
Alignment explanation
Indices: 3973114--3973194 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
3973104 TTCGATCACG
3973114 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
3973140 CGTGTA-T-CAGATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
3973165 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
3973191 TGTG
1 TGTG
3973195 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:3973201 original size:102 final size:101
Alignment explanation
Indices: 3973012--3973201 Score: 265
Period size: 102 Copynumber: 1.9 Consensus size: 101
3973002 TGATGGTCGT
* *
3973012 GTGTGTAGTATTATGTGCAAGCTACTACGTGTACCGAAATGATAGGTCGCATATGTAGTACTATG
1 GTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAAATGATAGGTCACATATGTAGTACTATG
**
3973077 TGCAGGCTACTATGCGTGCCGAATAGTTTCGATCAC
66 TGCAGGCTACTATGCGAACCGAATAGTTTCGATCAC
* * * * *
3973113 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGATGGTAATGGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAAATGAT-A-GGTCACATATGTAGTACTA
*
3973177 TGTGCAGGCTACTATGTGAACCGAA
64 TGTGCAGGCTACTATGCGAACCGAA
3973202 CATCATTGAT
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 5 0.06
101 33 0.43
102 39 0.51
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAAATGATAGGTCACATATGTAGTACTATG
TGCAGGCTACTATGCGAACCGAATAGTTTCGATCAC
Found at i:3976412 original size:8 final size:8
Alignment explanation
Indices: 3976395--3976438 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
3976385 TACAAGCGTG
*
3976395 TATATATA
1 TATATTTA
3976403 TATATTTA
1 TATATTTA
3976411 TATATTTA
1 TATATTTA
3976419 TATATTCTA
1 TATATT-TA
*
3976428 TA-ATTTT
1 TATATTTA
3976435 TATA
1 TATA
3976439 CACATATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 3 0.09
8 25 0.78
9 4 0.12
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (8 bp):
TATATTTA
Found at i:3983406 original size:11 final size:13
Alignment explanation
Indices: 3983380--3983404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3983370 AACTAGTTGT
3983380 TTATGTAAATATA
1 TTATGTAAATATA
3983393 TTATGTAAATAT
1 TTATGTAAATAT
3983405 TAAACATGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TTATGTAAATATA
Found at i:3984450 original size:33 final size:33
Alignment explanation
Indices: 3984413--3984477 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
3984403 CTAACTTAAA
3984413 CAAAAAAAAATTCAAACC-CTAATATAAAAACAG
1 CAAAAAAAAATTCAAACCTC-AATATAAAAACAG
*
3984446 CAAAATAAAATTCAAACCTCAATATAAAAACA
1 CAAAAAAAAATTCAAACCTCAATATAAAAACA
3984478 ATTGCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.63, C:0.18, G:0.02, T:0.17
Consensus pattern (33 bp):
CAAAAAAAAATTCAAACCTCAATATAAAAACAG
Found at i:3991457 original size:25 final size:24
Alignment explanation
Indices: 3991428--3991479 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 24
3991418 AAATGTTGAG
3991428 TAATATATTATATTATTATATATAA
1 TAATATATTATATTATTAT-TATAA
3991453 TAATATATTATATTATTATTATAA
1 TAATATATTATATTATTATTATAA
3991477 TAA
1 TAA
3991480 AACAAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TAATATATTATATTATTATTATAA
Found at i:3992428 original size:42 final size:42
Alignment explanation
Indices: 3992369--3992454 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
3992359 GATTAGAAGA
*
3992369 GTTCAGAGATTTCTTTGACTTCGAGTCGATGAGACACTAGAT
1 GTTCAGAGATTTCTTTGACTTCGAGTCAATGAGACACTAGAT
*
3992411 GTTCAGAGATTTCTTTGACTTCGAGTCAATGAGACACTGGAT
1 GTTCAGAGATTTCTTTGACTTCGAGTCAATGAGACACTAGAT
3992453 GT
1 GT
3992455 CAATTTACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
GTTCAGAGATTTCTTTGACTTCGAGTCAATGAGACACTAGAT
Found at i:3999590 original size:24 final size:24
Alignment explanation
Indices: 3999556--3999607 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3999546 TTTCTAGAAG
* *
3999556 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
3999580 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
3999604 ATTT
1 ATTT
3999608 GACTTTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:4000580 original size:26 final size:26
Alignment explanation
Indices: 4000551--4000600 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4000541 GATCAACTTA
4000551 TTCAAACAGAGGTAAAACTTGTAACC
1 TTCAAACAGAGGTAAAACTTGTAACC
*
4000577 TTCAAACATAGGTAAAACTTGTAA
1 TTCAAACAGAGGTAAAACTTGTAA
4000601 GTTCTGCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (26 bp):
TTCAAACAGAGGTAAAACTTGTAACC
Found at i:4004058 original size:24 final size:24
Alignment explanation
Indices: 4003995--4004046 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
4003985 TTTCTAGAAG
* * *
4003995 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
4004019 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
4004043 ATTT
1 ATTT
4004047 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:4031029 original size:18 final size:18
Alignment explanation
Indices: 4031002--4031050 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 18
4030992 CCTGATATAA
4031002 TAAATATTTTTAAATTTT
1 TAAATATTTTTAAATTTT
*
4031020 TAAAT-TTTTTTAATTTT
1 TAAATATTTTTAAATTTT
*
4031037 AAAATATTTTTAAA
1 TAAATATTTTTAAA
4031051 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TAAATATTTTTAAATTTT
Found at i:4031047 original size:11 final size:11
Alignment explanation
Indices: 4031033--4031112 Score: 56
Period size: 11 Copynumber: 6.9 Consensus size: 11
4031023 ATTTTTTTAA
4031033 TTTTAAAATAT
1 TTTTAAAATAT
4031044 TTTTAAAATATTT
1 TTTTAAAATA--T
** *
4031057 TTTTATTATTT
1 TTTTAAAATAT
4031068 TAATTTAAAAATAT
1 T--TTT-AAAATAT
4031082 TTTTAAAATACT
1 TTTTAAAATA-T
*
4031094 TTTTTAAA-A-
1 TTTTAAAATAT
4031103 TTTTAAAATA
1 TTTTAAAATA
4031113 AATTTTTGGT
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
9 7 0.13
10 1 0.02
11 19 0.35
12 11 0.20
13 11 0.20
14 5 0.09
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:4031069 original size:38 final size:38
Alignment explanation
Indices: 4031003--4031108 Score: 128
Period size: 38 Copynumber: 2.9 Consensus size: 38
4030993 CTGATATAAT
** * *
4031003 AAATATTTTT--AA-ATTTTTAAATTTTTTTAATTTTA
1 AAATATTTTTAAAATATTTTTTTATTATTTTAATTTAA
4031038 AAATATTTTTAAAATATTTTTTTATTATTTTAATTTAA
1 AAATATTTTTAAAATATTTTTTTATTATTTTAATTTAA
* **
4031076 AAATATTTTTAAAATACTTTTTTAAAATTTTAA
1 AAATATTTTTAAAATATTTTTTTATTATTTTAA
4031109 AATAAATTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
35 10 0.16
37 2 0.03
38 49 0.80
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (38 bp):
AAATATTTTTAAAATATTTTTTTATTATTTTAATTTAA
Found at i:4033863 original size:19 final size:19
Alignment explanation
Indices: 4033839--4033930 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
4033829 AATCATATCT
4033839 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
4033858 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
** *
4033877 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
4033896 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
4033915 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
4033931 CCTGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:4033897 original size:38 final size:38
Alignment explanation
Indices: 4033816--4033930 Score: 140
Period size: 38 Copynumber: 2.9 Consensus size: 38
4033806 AAATTAAATC
* *
4033816 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTACATATCATA
* *
4033858 TCTAAGATTACATATCATATCTAAGATTATATATTATA
1 TCTAAGATTACATATCATATCTAAGATTACATATCATA
* *
4033896 TCTAAGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTACATATC
4033931 CCTGAAGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
38 47 0.72
41 7 0.11
42 11 0.17
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTACATATCATA
Found at i:4039290 original size:20 final size:20
Alignment explanation
Indices: 4039256--4039297 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
4039246 AACTATTTAA
** *
4039256 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
4039276 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
4039296 AT
1 AT
4039298 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:4039732 original size:19 final size:19
Alignment explanation
Indices: 4039692--4039735 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
4039682 CTTCTTTTTC
*
4039692 TGTTCGAGTTCCATTTGCG
1 TGTTCGAGTTCCATTCGCG
* *
4039711 TGTTCGAGTTCCGTTCGTG
1 TGTTCGAGTTCCATTCGCG
4039730 TGTTCG
1 TGTTCG
4039736 TCTGTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.07, C:0.20, G:0.30, T:0.43
Consensus pattern (19 bp):
TGTTCGAGTTCCATTCGCG
Found at i:4043429 original size:6 final size:6
Alignment explanation
Indices: 4043418--4043452 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
4043408 GTGCTAATTC
4043418 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA AGGTG
1 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA AGGTG
4043453 CAGGAGTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.17
Consensus pattern (6 bp):
AGGTGA
Found at i:4049680 original size:72 final size:72
Alignment explanation
Indices: 4049529--4049671 Score: 216
Period size: 72 Copynumber: 2.0 Consensus size: 72
4049519 TCTCGGATTT
* * * * *
4049529 AAAAACAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGACCGTTTAAA
1 AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAAACCATTTAAA
4049594 ACTTGAG
66 ACTTGAG
* *
4049601 AAAAAAAGGGATCATGCTCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAAATCATTT-AA
1 AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAAACCATTTAAA
4049665 ACTTGAG
66 ACTTGAG
4049672 TTTGAAAAGA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 9 0.14
72 55 0.86
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (72 bp):
AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAAACCATTTAAA
ACTTGAG
Found at i:4050301 original size:27 final size:26
Alignment explanation
Indices: 4050266--4050327 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
4050256 GTATGTGTAT
*
4050266 ATATATATATATATATGAAAATA-AAAA
1 ATATATATAGAT-TAT-AAAATATAAAA
* *
4050293 ATGTATATAGATTATAGAATATAAAA
1 ATATATATAGATTATAAAATATAAAA
4050319 ATATATATA
1 ATATATATA
4050328 AGTATGTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 5 0.17
26 15 0.50
27 10 0.33
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (26 bp):
ATATATATAGATTATAAAATATAAAA
Found at i:4050474 original size:9 final size:9
Alignment explanation
Indices: 4050435--4050481 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 9
4050425 TAAATGAATA
*
4050435 AATAATAAT
1 AATATTAAT
4050444 AATA-TAAT
1 AATATTAAT
4050452 AATA-TAAT
1 AATATTAAT
4050460 AATATTAAT
1 AATATTAAT
*
4050469 AGTATTAAAT
1 AATATT-AAT
4050479 AAT
1 AAT
4050482 TAATTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
8 16 0.47
9 13 0.38
10 5 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
AATATTAAT
Found at i:4050483 original size:17 final size:18
Alignment explanation
Indices: 4050431--4050485 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 18
4050421 AGTATAAATG
4050431 AATAA-ATAATAATAATAT
1 AATAATATAATAATAAT-T
4050449 AATAATATAATAAT-ATT
1 AATAATATAATAATAATT
* *
4050466 AATAGTATTA-AATAATT
1 AATAATATAATAATAATT
4050483 AAT
1 AAT
4050486 TTTAATAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
16 3 0.09
17 15 0.45
18 7 0.21
19 8 0.24
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATAATATAATAATAATT
Found at i:4059157 original size:17 final size:16
Alignment explanation
Indices: 4059137--4059171 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
4059127 ATTATCATAC
*
4059137 TTATTCTTATTATTGTA
1 TTATTATTATTATT-TA
4059154 TTATTATTATTATTTA
1 TTATTATTATTATTTA
4059170 TT
1 TT
4059172 TGTTTTCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (16 bp):
TTATTATTATTATTTA
Found at i:4060113 original size:11 final size:11
Alignment explanation
Indices: 4060097--4060135 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
4060087 TATATAAATA
4060097 TATAAATTAAT
1 TATAAATTAAT
*
4060108 TATAAAGTATAT
1 TATAAATTA-AT
4060120 TATTAAATTAAT
1 TA-TAAATTAAT
4060132 TATA
1 TATA
4060136 TTATATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:4061582 original size:23 final size:22
Alignment explanation
Indices: 4061556--4061599 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
4061546 AGCCCAGATT
4061556 CCTAACCCAAATCAAAACTAAAC
1 CCTAACCCAAAT-AAAACTAAAC
* *
4061579 CCTAGCCCAACTAAAACTAAA
1 CCTAACCCAAATAAAACTAAA
4061600 AATTATTAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.50, C:0.34, G:0.02, T:0.14
Consensus pattern (22 bp):
CCTAACCCAAATAAAACTAAAC
Found at i:4061934 original size:16 final size:16
Alignment explanation
Indices: 4061901--4061955 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 16
4061891 TACTTACTTT
4061901 TTTTGATCTATTTATTTTA
1 TTTT-ATCT-TTT-TTTTA
4061920 TTTTATCTTTTTTTTTA
1 TTTTATC-TTTTTTTTA
*
4061937 TTTT-TCTTTTTTTCA
1 TTTTATCTTTTTTTTA
4061952 TTTT
1 TTTT
4061956 TCTGTTATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
15 12 0.35
16 2 0.06
17 9 0.26
18 6 0.18
19 5 0.15
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTATCTTTTTTTTA
Found at i:4061935 original size:17 final size:17
Alignment explanation
Indices: 4061901--4061949 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
4061891 TACTTACTTT
*
4061901 TTTTGATCTATTTATTTTA
1 TTTT-ATCT-TTTTTTTTA
4061920 TTTTATCTTTTTTTTTA
1 TTTTATCTTTTTTTTTA
4061937 TTTT-TCTTTTTTT
1 TTTTATCTTTTTTT
4061950 CATTTTTCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 9 0.31
17 12 0.41
18 4 0.14
19 4 0.14
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTATCTTTTTTTTTA
Found at i:4061956 original size:15 final size:14
Alignment explanation
Indices: 4061915--4061958 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 14
4061905 GATCTATTTA
4061915 TTTTATTTTATCTTTTT
1 TTTTATTTT-TC--TTT
4061932 TTTTATTTTTCTTT
1 TTTTATTTTTCTTT
4061946 TTTTCATTTTTCT
1 TTTT-ATTTTTCT
4061959 GTTATAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 7 0.27
15 8 0.31
16 2 0.08
17 9 0.35
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTATTTTTCTTT
Found at i:4067716 original size:44 final size:44
Alignment explanation
Indices: 4067645--4067732 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
4067635 TGTCGAGTGG
* * *
4067645 CAAATGTTGACTCTAATGTAGTTGTTGATTGTGGGTGTATCTGT
1 CAAATGTTAACTATAATGTAGTCGTTGATTGTGGGTGTATCTGT
*
4067689 CAAATGTTAACTATAATGTGGTCGTTGATTGTGGGTGTATCTGT
1 CAAATGTTAACTATAATGTAGTCGTTGATTGTGGGTGTATCTGT
4067733 TGATAAGCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.22, C:0.09, G:0.27, T:0.42
Consensus pattern (44 bp):
CAAATGTTAACTATAATGTAGTCGTTGATTGTGGGTGTATCTGT
Found at i:4074895 original size:27 final size:27
Alignment explanation
Indices: 4074865--4074929 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
4074855 TTTTTTTTCT
*
4074865 TTTTATTCTTTTTTTATTC-TTCCTTCC
1 TTTT-TTCTTTTCTTATTCTTTCCTTCC
* * *
4074892 TTTTTCACGTTTCTTATTCTTTCCTTTC
1 TTTTT-TCTTTTCTTATTCTTTCCTTCC
4074920 TTTTTTCTTT
1 TTTTTTCTTT
4074930 ATCTGTTCCT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 17 0.57
28 12 0.40
ACGTcount: A:0.06, C:0.22, G:0.02, T:0.71
Consensus pattern (27 bp):
TTTTTTCTTTTCTTATTCTTTCCTTCC
Found at i:4082304 original size:17 final size:18
Alignment explanation
Indices: 4082269--4082305 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
4082259 GCTACAAAAC
*
4082269 AAAATGAAGAAATAGAAG
1 AAAATGAAGAAAAAGAAG
4082287 AAAATGAA-AAAAAGAAG
1 AAAATGAAGAAAAAGAAG
4082304 AA
1 AA
4082306 GCTATTGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (18 bp):
AAAATGAAGAAAAAGAAG
Found at i:4083372 original size:17 final size:15
Alignment explanation
Indices: 4083332--4083377 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
4083322 AATAAAACTC
*
4083332 TATAAAATTTTAAAAA
1 TATAAAA-TATAAAAA
4083348 TATAAAATATAAAATA
1 TATAAAATATAAAA-A
4083364 TATTAAAATATAAA
1 TA-TAAAATATAAA
4083378 TAAAATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 6 0.22
16 10 0.37
17 11 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TATAAAATATAAAAA
Found at i:4084443 original size:26 final size:26
Alignment explanation
Indices: 4084400--4084463 Score: 121
Period size: 25 Copynumber: 2.5 Consensus size: 26
4084390 TATTATGGAG
4084400 TGTTTTATTTTGAATTTTTTTAAAAT
1 TGTTTTATTTTGAATTTTTTTAAAAT
4084426 TG-TTTATTTTGAATTTTTTTAAAAT
1 TGTTTTATTTTGAATTTTTTTAAAAT
4084451 TGTTTTATTTTGA
1 TGTTTTATTTTGA
4084464 TAAAATAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 25 0.68
26 12 0.32
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (26 bp):
TGTTTTATTTTGAATTTTTTTAAAAT
Found at i:4085762 original size:16 final size:15
Alignment explanation
Indices: 4085741--4085773 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
4085731 CAAAGAAAAA
4085741 AATAAAATAAATCAAT
1 AATAAAATAAAT-AAT
4085757 AATAAAATAAATAAT
1 AATAAAATAAATAAT
4085772 AA
1 AA
4085774 CAATGATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAAAATAAATAAT
Found at i:4085777 original size:21 final size:20
Alignment explanation
Indices: 4085739--4085788 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
4085729 ATCAAAGAAA
*
4085739 AAAATAAAATAAATCAATAAT
1 AAAAT-AAATAAAACAATAAT
*
4085760 AAAATAAATAATAACAATGAT
1 AAAATAAATAA-AACAATAAT
4085781 AACAATAA
1 AA-AATAA
4085789 TAGTTCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAATAAATAAAACAATAAT
Found at i:4085972 original size:4 final size:4
Alignment explanation
Indices: 4085957--4086073 Score: 64
Period size: 4 Copynumber: 29.2 Consensus size: 4
4085947 ATTTGTAATA
* * *
4085957 AAAT ACAT AAAT AAAT AAAT -AAT -AAT AGAT ATAAT -AAT AAAT ATAGT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT A-AAT
* * * * * **
4086004 AAAAG AAAA AACAA AAAT AAAA AACAA AAAT AAAT GTAT AAAT --AT AAAT
1 -AAAT AAAT AA-AT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT
4086053 AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT A
4086074 CAAAGAAACA
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
2 2 0.02
3 9 0.10
4 64 0.72
5 13 0.15
6 1 0.01
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:4085995 original size:22 final size:21
Alignment explanation
Indices: 4085953--4086067 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 21
4085943 TGCAATTTGT
4085953 AATAAAATACATAAATAAATA
1 AATAAAATACATAAATAAATA
*
4085974 AATAATAATAGATATAAT-AATA
1 AATAA-AATACATA-AATAAATA
* * * * * *
4085996 AATATAGTAAAAGAAAAAACAAA
1 AATAAAAT-ACATAAATAA-ATA
* * *
4086019 AATAAAAAACAAAAATAAATG
1 AATAAAATACATAAATAAATA
* *
4086040 TATAAATATAAATAAATAAATA
1 AATAAA-ATACATAAATAAATA
4086062 AATAAA
1 AATAAA
4086068 TAAATACAAA
Statistics
Matches: 67, Mismatches: 21, Indels: 11
0.68 0.21 0.11
Matches are distributed among these distances:
21 15 0.22
22 42 0.63
23 10 0.15
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
AATAAAATACATAAATAAATA
Found at i:4086025 original size:13 final size:13
Alignment explanation
Indices: 4086004--4086037 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
4085994 TAAATATAGT
*
4086004 AAAAGAAAAAACA
1 AAAATAAAAAACA
4086017 AAAATAAAAAACA
1 AAAATAAAAAACA
4086030 AAAATAAA
1 AAAATAAA
4086038 TGTATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (13 bp):
AAAATAAAAAACA
Found at i:4087808 original size:130 final size:130
Alignment explanation
Indices: 4087622--4087957 Score: 361
Period size: 130 Copynumber: 2.5 Consensus size: 130
4087612 TTTAATTCGG
* * * * *
4087622 TCCACTGCAACTTCAGGGAGATAGGATTAGTATCTTCAATATGCTCCACTGCAACTTTAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTCAACATGCTCAACTGCAACTTCAGGGAGA
* * * *
4087687 TAAGGTTTGCTATGATTTGCTTTACTGCAACTTCAAAGAGATAAGATTTGCTATTTTCAATCTGC
66 TAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGCCATTTTCAATCTGC
* * *
4087752 TCCACTGCAACTTTAGGGAGATAAGACTT-GTAACTTCAACCTGCTCAACTGTAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGA-TTAGTAACTTCAACATGCTCAACTGCAACTTCAGGGAG
* * *
4087816 ATAATGTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGCCATTTATAGCTTC
65 ATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGCCA--T-T---TTC
*
4087881 AATCTGT
124 AATCTGC
* * ** * * * *
4087888 TCCACTGCAACTTCAAGGAAATAAGATTCTCTATCTTTAGTC-TGCTCCACTGCAACTTCAGGGA
1 TCCACTGCAACTTCAGGGAGATAAGATT-AGTAACTTCA-ACATGCTCAACTGCAACTTCAGGGA
4087952 GATAAG
64 GATAAG
4087958 ACTTATAACT
Statistics
Matches: 170, Mismatches: 26, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
130 100 0.59
131 2 0.01
132 1 0.01
133 1 0.01
135 2 0.01
136 32 0.19
137 31 0.18
138 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (130 bp):
TCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTCAACATGCTCAACTGCAACTTCAGGGAGA
TAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGCCATTTTCAATCTGC
Found at i:4087941 original size:181 final size:181
Alignment explanation
Indices: 4087710--4088196 Score: 762
Period size: 181 Copynumber: 2.7 Consensus size: 181
4087700 GATTTGCTTT
* * * *
4087710 ACTGCAACTTCAAAGAGATAAGATT-TGCTAT-TTTCAATCTGCTCCACTGCAACTTTAGGGAGA
1 ACTGCAACTTCAAGGAAATAAGATTCT-CTATCTTT-AGTCTGCTCCACTGCAACTTCAGGGAGA
* * *
4087773 TAAGACTTGTAACTTCAACCTGCTCAACTGTAACTTCAGGGAGATAATGTTTGTTATGATCTGCT
64 TAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCTATGATCTGCT
*
4087838 CTACTGCAACTTCAGAGAGATAAGATCTGCCATTTATAGCTTCAATCTGTTCC
129 CTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCC
4087891 ACTGCAACTTCAAGGAAATAAGATTCTCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAAGGAAATAAGATTCTCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
4087956 AGACTTATAACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGCTATGATTTGCTCT
66 AGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCT
* *
4088021 ACTGTAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCC
131 ACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCC
* * * * *
4088072 ACTGTAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGTGAGATA
1 ACTGCAACTTCAAGGAAATAAGATTCTCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
*
4088137 AGACTAGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCTATGATCT
66 AGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCTATGATCT
4088197 TTAATCCATC
Statistics
Matches: 280, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
181 276 0.99
182 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (181 bp):
ACTGCAACTTCAAGGAAATAAGATTCTCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
AGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCT
ACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCC
Found at i:4088181 original size:44 final size:44
Alignment explanation
Indices: 4087622--4088182 Score: 304
Period size: 44 Copynumber: 12.6 Consensus size: 44
4087612 TTTAATTCGG
* * * *
4087622 TCCACTGCAACTTCAGGGAGATAGGATTAGTATCTTCAATATGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGC
* * ** * *
4087666 TCCACTGCAACTTTAGGGAGATAAG-GT--TTGCTAT-GATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAACT-TCAATCTGC
** ** * * **
4087707 TTTACTGCAACTTCAAAGAGATAAGATTTGCTATTTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAG-TAACTTCAATCTGC
* * *
4087752 TCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGC
* * * * * *
4087796 TCAACTGTAACTTCAGGGAGATAATG-TTTGTTA--T-GATCTGC
1 TCCACTGCAACTTCAGGGAGATAA-GACTAGTAACTTCAATCTGC
* * * *
4087837 TCTACTGCAACTTCAGAGAGATAAGATCTGCCATTTATAGCTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGA-CT---A-GTA-A-CTTCAATCTGC
* * * * * *
4087888 TCCACTGCAACTTCAAGGAAATAAGATTCT-CTATCTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA--CTAGTAACTTCAATCTGC
*
4087933 TCCACTGCAACTTCAGGGAGATAAGACTTA-TAACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGAC-TAGTAACTTCAATCTGC
* * ** * *
4087977 TCCACTGCAACTTCAGAGAGATAAG-GT--TTGCTAT-GATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAACT-TCAATCTGC
* * * * *
4088018 TCTACTGTAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGA-C--T-A-GTA-A-CTTCAATCTGC
* * * * * *
4088069 TCCACTGTAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAG-TAACTTCAATCTGC
* *
4088114 TCCACTGCAACTTCAGTGAGATAAGACTAGTAACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGC
*
4088158 TCCACTGTAACTTCAGGGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
4088183 GTTTGCTATG
Statistics
Matches: 391, Mismatches: 92, Indels: 68
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 84 0.21
42 6 0.02
43 2 0.01
44 130 0.33
45 99 0.25
46 1 0.00
47 5 0.01
48 1 0.00
49 1 0.00
50 2 0.01
51 56 0.14
52 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGC
Found at i:4090932 original size:43 final size:43
Alignment explanation
Indices: 4090836--4090949 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
4090826 CTCTTACAAA
* * * *
4090836 GCCAACGTTCCAGACGGGGTCTTACATGTAATCACATATCGAT
1 GCCAACGTCCCAGACAGGGTCTTACACGTAAACACATATCGAT
* * *
4090879 G-CTACTGTCCCAGATAGGGTCTTACACGTAAACACA-AGTCGGT
1 GCCAAC-GTCCCAGACAGGGTCTTACACGTAAACACATA-TCGAT
*
4090922 GCCAACGTCCCAGACATGGTCTTACACG
1 GCCAACGTCCCAGACAGGGTCTTACACG
4090950 ATAACATATA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 4 0.07
43 51 0.88
44 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (43 bp):
GCCAACGTCCCAGACAGGGTCTTACACGTAAACACATATCGAT
Found at i:4091844 original size:11 final size:12
Alignment explanation
Indices: 4091829--4091857 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
4091819 TATGTTTATG
4091829 TTATTAACATTA
1 TTATTAACATTA
4091841 -TATTAACATTA
1 TTATTAACATTA
4091852 TTATTA
1 TTATTA
4091858 TTTTACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (12 bp):
TTATTAACATTA
Found at i:4092750 original size:19 final size:19
Alignment explanation
Indices: 4092729--4092800 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 19
4092719 AGCCTCTCCT
4092729 TTTTCTTTTCTCATTTC-T-
1 TTTTCTTTT-TCATTTCTTC
4092747 TTTTCTTTTTTC-TTTCATTC
1 TTTTC-TTTTTCATTTC-TTC
*
4092767 TTTTCTTTTTCATTTTTTC
1 TTTTCTTTTTCATTTCTTC
*
4092786 TTTTCTGTTTCATTT
1 TTTTCTTTTTCATTT
4092801 TTTAATTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
17 4 0.09
18 7 0.15
19 28 0.60
20 8 0.17
ACGTcount: A:0.06, C:0.18, G:0.01, T:0.75
Consensus pattern (19 bp):
TTTTCTTTTTCATTTCTTC
Found at i:4092758 original size:13 final size:14
Alignment explanation
Indices: 4092742--4092789 Score: 66
Period size: 13 Copynumber: 3.6 Consensus size: 14
4092732 TCTTTTCTCA
4092742 TTTCTTTTTC-TTT
1 TTTCTTTTTCATTT
4092755 TTTC--TTTCATTCT
1 TTTCTTTTTCATT-T
4092768 TTTCTTTTTCATTT
1 TTTCTTTTTCATTT
4092782 TTTCTTTT
1 TTTCTTTT
4092790 CTGTTTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 4 0.13
12 2 0.06
13 9 0.29
14 9 0.29
15 7 0.23
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTCTTTTTCATTT
Found at i:4092759 original size:20 final size:19
Alignment explanation
Indices: 4092734--4092776 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
4092724 CTCCTTTTTC
4092734 TTTTC-TCATTTCTTTTTCTT
1 TTTTCTTCA-TTC-TTTTCTT
4092754 TTTTCTTTCATTCTTTTCTT
1 TTTTC-TTCATTCTTTTCTT
4092774 TTT
1 TTT
4092777 CATTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 15 0.71
21 3 0.14
22 3 0.14
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTCTTCATTCTTTTCTT
Found at i:4092768 original size:33 final size:33
Alignment explanation
Indices: 4092731--4092803 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 33
4092721 CCTCTCCTTT
*
4092731 TTCTTTTCTCATTTC-TTTTTCTTTTTTCTTTCA
1 TTCTTTTCT-ATTTCATTTTTCTTTTCTCTTTCA
* *
4092764 TTCTTTTCTTTTTCATTTTTTCTTTTCTGTTTCA
1 TTCTTTTCTATTTCA-TTTTTCTTTTCTCTTTCA
4092798 TT-TTTT
1 TTCTTTT
4092804 AATTTTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 4 0.11
33 13 0.37
34 18 0.51
ACGTcount: A:0.05, C:0.18, G:0.01, T:0.75
Consensus pattern (33 bp):
TTCTTTTCTATTTCATTTTTCTTTTCTCTTTCA
Found at i:4092790 original size:13 final size:12
Alignment explanation
Indices: 4092728--4092791 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 12
4092718 TAGCCTCTCC
4092728 TTTTTCTTTTCT
1 TTTTTCTTTTCT
**
4092740 CATTTCTTTTTCT
1 TTTTTC-TTTTCT
4092753 TTTTTC-TTTCAT
1 TTTTTCTTTTC-T
4092765 TCTTTTCTTTTTCAT
1 T-TTTTC-TTTTC-T
4092780 TTTTTCTTTTCT
1 TTTTTCTTTTCT
4092792 GTTTCATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 4 0.09
12 7 0.16
13 20 0.47
14 5 0.12
15 7 0.16
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTCTTTTCT
Found at i:4092801 original size:26 final size:24
Alignment explanation
Indices: 4092728--4092811 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 24
4092718 TAGCCTCTCC
4092728 TTTTTCTTTTCTCATTTCTTTTTC-T
1 TTTTTCTTTTCT--TTTCTTTTTCAT
4092753 TTTTTCTTTCATTCTTTTCTTTTTCAT
1 TTTTTC-TT--TTCTTTTCTTTTTCAT
*
4092780 TTTTTCTTTTCTGTTTCATTTTTTAAT
1 TTTTTCTTTTCT-TTTC--TTTTTCAT
4092807 TTTTT
1 TTTTT
4092812 TAAAAATAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 12
0.80 0.02 0.19
Matches are distributed among these distances:
24 4 0.08
25 10 0.20
26 14 0.27
27 19 0.37
28 4 0.08
ACGTcount: A:0.07, C:0.15, G:0.01, T:0.76
Consensus pattern (24 bp):
TTTTTCTTTTCTTTTCTTTTTCAT
Found at i:4092810 original size:34 final size:34
Alignment explanation
Indices: 4092746--4092810 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
4092736 TTCTCATTTC
* *
4092746 TTTTTCTTTTTTCTTTCATTCTTTTCTTTTTCAT
1 TTTTTCTTTTCTCTTTCATTCTTTTATTTTTCAT
*
4092780 TTTTTCTTTTCTGTTTCATT-TTTTAATTTTT
1 TTTTTCTTTTCTCTTTCATTCTTTT-ATTTTT
4092811 TTAAAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.08, C:0.14, G:0.02, T:0.77
Consensus pattern (34 bp):
TTTTTCTTTTCTCTTTCATTCTTTTATTTTTCAT
Found at i:4097829 original size:16 final size:15
Alignment explanation
Indices: 4097808--4097840 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
4097798 TCAAAGAAAA
4097808 AATAAAATAAATCAAT
1 AATAAAATAAAT-AAT
4097824 AATAAAATAAATAAT
1 AATAAAATAAATAAT
4097839 AA
1 AA
4097841 CAATGATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAAAATAAATAAT
Found at i:4097844 original size:21 final size:21
Alignment explanation
Indices: 4097806--4097859 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
4097796 AATCAAAGAA
*
4097806 AAAATAAAATAA-ATCAATAAT
1 AAAAT-AAATAATAACAATAAT
*
4097827 AAAATAAATAATAACAATGAT
1 AAAATAAATAATAACAATAAT
4097848 AACAAT-AATAAT
1 AA-AATAAATAAT
4097860 TCTAATGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 6 0.21
21 20 0.69
22 3 0.10
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAATAAATAATAACAATAAT
Found at i:4098136 original size:18 final size:18
Alignment explanation
Indices: 4098110--4098144 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4098100 AACAAAAAAA
4098110 TATAAATATAAATAAATG
1 TATAAATATAAATAAATG
*
4098128 TATATATATAAATAAAT
1 TATAAATATAAATAAAT
4098145 ACAAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
TATAAATATAAATAAATG
Found at i:4098689 original size:12 final size:12
Alignment explanation
Indices: 4098672--4098697 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4098662 CTCTCCAGAA
4098672 TCCGGCCAGGGG
1 TCCGGCCAGGGG
4098684 TCCGGCCAGGGG
1 TCCGGCCAGGGG
4098696 TC
1 TC
4098698 ACCGCACAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.35, G:0.46, T:0.12
Consensus pattern (12 bp):
TCCGGCCAGGGG
Found at i:4100542 original size:151 final size:151
Alignment explanation
Indices: 4100268--4100555 Score: 452
Period size: 151 Copynumber: 1.9 Consensus size: 151
4100258 AAATTGTGAA
* *
4100268 TAATGTGGATTCGGGCGCTGGTCATAAGTTCTACCCGTGGCTGAGTATACTGGCATATGTTGCGG
1 TAATGTGAACTCGGGCGCTGGTCATAAGTTCTACCCGTGGCTGAGTATACTGGCATATGTTGCGG
* * * * *
4100333 ATACCTGACAGCTTGTGTGAGCAGCACTGAGTAGTAACGAATGACTGATAGTTTGTGTGAGCAGG
66 ATACCTGACAGCTTGTGTGAGCAGCACTGAGTAGTAACAAAAGACTGACAGCTTGTGTGAGCAGA
4100398 CCCGTGATGCAAAACTATGAT
131 CCCGTGATGCAAAACTATGAT
* * * *
4100419 TAATGTGAACTCGGGTGCTGGTCTTAAGTTCTACCTGTGGCT-AGGTATACTGGCATATGTTGGG
1 TAATGTGAACTCGGGCGCTGGTCATAAGTTCTACCCGTGGCTGA-GTATACTGGCATATGTTGCG
*
4100483 GATACCTGACAGCTTGTGTGAGCAGCACTGAGTAGTAATAAAAGACTGACAGCTTGTGTGAGCAG
65 GATACCTGACAGCTTGTGTGAGCAGCACTGAGTAGTAACAAAAGACTGACAGCTTGTGTGAGCAG
4100548 ACCCGTGA
130 ACCCGTGA
4100556 AAGTGAATAG
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
150 1 0.01
151 123 0.99
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (151 bp):
TAATGTGAACTCGGGCGCTGGTCATAAGTTCTACCCGTGGCTGAGTATACTGGCATATGTTGCGG
ATACCTGACAGCTTGTGTGAGCAGCACTGAGTAGTAACAAAAGACTGACAGCTTGTGTGAGCAGA
CCCGTGATGCAAAACTATGAT
Found at i:4106422 original size:42 final size:42
Alignment explanation
Indices: 4106297--4106415 Score: 157
Period size: 45 Copynumber: 2.8 Consensus size: 42
4106287 GCGTTTACAG
* *
4106297 AAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCGA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCGA
* * *
4106339 AAAAAACGCCACCACTAAAGATCATGTTCTTTAGCGGCGCTTGGT
1 AAAAAACG---CCGCTAAAGATCATGTTCTTTAGCGGCGCTTCGA
*
4106384 AAAAAACGCCGCTATAGATCATGTTCTTTAGC
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGC
4106416 AACGCTTTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
42 29 0.43
45 38 0.57
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCGA
Found at i:4106891 original size:21 final size:21
Alignment explanation
Indices: 4106867--4106939 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
4106857 GCTTCTCTCG
*
4106867 CTGCTTCTCGCGCTGCAGCCT
1 CTGCTTCTCGCGCTGTAGCCT
* * *
4106888 CTGCTTCACTTGTTGCCGTAGCCT
1 CTGCTT--CTCG-CGCTGTAGCCT
* *
4106912 CTGCTTCCCTCGCTGTAGCCT
1 CTGCTTCTCGCGCTGTAGCCT
4106933 CTGCTTC
1 CTGCTTC
4106940 CATCGTTGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
21 22 0.55
22 1 0.03
23 3 0.08
24 14 0.35
ACGTcount: A:0.05, C:0.40, G:0.21, T:0.34
Consensus pattern (21 bp):
CTGCTTCTCGCGCTGTAGCCT
Found at i:4106940 original size:21 final size:21
Alignment explanation
Indices: 4106905--4106959 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
4106895 ACTTGTTGCC
*
4106905 GTAGCCTCTGCTTCCCTCGCT
1 GTAGCCTCTGCTTCCATCGCT
*
4106926 GTAGCCTCTGCTTCCATCGTT
1 GTAGCCTCTGCTTCCATCGCT
**
4106947 GCCGCCTCTGCTT
1 GTAGCCTCTGCTT
4106960 TAAGTTGTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.05, C:0.40, G:0.20, T:0.35
Consensus pattern (21 bp):
GTAGCCTCTGCTTCCATCGCT
Found at i:4109870 original size:365 final size:366
Alignment explanation
Indices: 4109200--4110283 Score: 1828
Period size: 365 Copynumber: 3.0 Consensus size: 366
4109190 TGCATCGACA
* *
4109200 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAATGGCACCGTTTTA
1 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTA
* * *
4109265 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACGGCACAATTAATATATTATAGAACAG
66 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACGCCACAATTAATATATTATCGAACCG
* * * * *
4109330 GCGTCGTTTTCAGTAAATTTTGTACATCCTTGCGGCGTTTTTAATAAAACGCCACTAAAAGATTC
131 ACGCCGTTTTCAGTAAATTTTATACATCCTTGCGGCGTTTATAATAAAACGCCACTAAAATATTC
* * * *
4109395 CATCCTTCAACTGAAACGGCGCCGTTTTCGCAAAGTTCAAATATTATTTATGGCGCTTTTAGGAA
196 CATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTTAAATATTATTTACGGCGCTTTTCGGAA
* * * * *
4109460 AAACGCCACAGCTAAAATTTATTCCCTAAGTCGAAACGACGCCGTATCGGTAAATGTAATAAATA
261 AAACGCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATT
4109525 TTTGTGGCTTTTTTTATCAAAACGCCGGTAATGTCTACC-T
326 TTTGTGGCTTTTTTTATCAAAACGCCGGTAATGTCTACCTT
* *
4109565 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGTGCCATTTTA
1 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTA
*
4109630 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAAAACGCCACAATTAATATATTATCGAACCG
66 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACGCCACAATTAATATATTATCGAACCG
*
4109695 ACGCCGTTTTCAGAAAATTTTATACATCCTTGCGGCGTTTATAATAAAACGCCACTAAAATATTC
131 ACGCCGTTTTCAGTAAATTTTATACATCCTTGCGGCGTTTATAATAAAACGCCACTAAAATATTC
* * * *
4109760 CATCCTTCAATTGAAACGGCACCGTTTTGGCAAAGTTTTAATATTATTTACGGCGCTTTTCGAAA
196 CATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTTAAATATTATTTACGGCGCTTTTCGGAA
*
4109825 AAACGCCACAACTTAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATT
261 AAACGCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATT
** *
4109890 TTTGTGGCGCTTTTTATAAAAACGCCGGTAATGTCTACCTT
326 TTTGTGGCTTTTTTTATCAAAACGCCGGTAATGTCTACCTT
4109931 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTA
1 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTA
4109996 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACGCCACAATTAATATATTATCGAACCG
66 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACGCCACAATTAATATATTATCGAACCG
*
4110061 ACGCCGTTTTCAGTAAATTTTATACATCCCTGCGGCGTTTATAATAAAACGCCACTAAAATATTC
131 ACGCCGTTTTCAGTAAATTTTATACATCCTTGCGGCGTTTATAATAAAACGCCACTAAAATATTC
* *
4110126 CATCCTTCAACTGAAACGACGCTGTTTTGGCAAAGTTTAAATATTATTTACGGCGCTTTTCGGAA
196 CATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTTAAATATTATTTACGGCGCTTTTCGGAA
* *
4110191 AAATGCCACAACTAAAACTTATTCCCTAAGCCGAAACGAAGCCGTATCGGTAAATGCAATAAATT
261 AAACGCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATT
4110256 TTTGTGGCGTTTTTTTATCAAAACGCCG
326 TTTGTGGC-TTTTTTTATCAAAACGCCG
4110284 CAAAATCTTA
Statistics
Matches: 669, Mismatches: 48, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
365 333 0.50
366 320 0.48
367 16 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (366 bp):
TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTA
TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACGCCACAATTAATATATTATCGAACCG
ACGCCGTTTTCAGTAAATTTTATACATCCTTGCGGCGTTTATAATAAAACGCCACTAAAATATTC
CATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTTAAATATTATTTACGGCGCTTTTCGGAA
AAACGCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATT
TTTGTGGCTTTTTTTATCAAAACGCCGGTAATGTCTACCTT
Found at i:4110357 original size:24 final size:23
Alignment explanation
Indices: 4110330--4110410 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 23
4110320 TGTATCATTC
4110330 ATTTAAATAATTAATTACCTATCT
1 ATTTAAATAATTAATTACCTAT-T
*
4110354 ATTTAAACAATTAATTACCTAAAAATT
1 ATTTAAATAATTAATTACCT----ATT
4110381 AATTTAAATAATTAATTACCTATTT
1 -ATTTAAATAATTAATTACCTA-TT
4110406 ATTTA
1 ATTTA
4110411 TTTATTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
24 25 0.51
25 2 0.04
27 1 0.02
28 21 0.43
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTAAATAATTAATTACCTATT
Found at i:4110413 original size:28 final size:26
Alignment explanation
Indices: 4110330--4110414 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 26
4110320 TGTATCATTC
*
4110330 ATTTAAATAATTAATTACC--TATCT
1 ATTTAAATAATTAATTACCTATATTT
* * *
4110354 ATTTAAACAATTAATTACCTAAAAATTA
1 ATTTAAATAATTAATTACCT--ATATTT
4110382 ATTTAAATAATTAATTACCTATTTATTT
1 ATTTAAATAATTAATTACCTA--TATTT
4110410 ATTTA
1 ATTTA
4110415 TTTTTTCTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
24 18 0.38
26 1 0.02
28 29 0.60
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (26 bp):
ATTTAAATAATTAATTACCTATATTT
Found at i:4110937 original size:15 final size:15
Alignment explanation
Indices: 4110917--4110946 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4110907 CTCTAACATG
4110917 ACCCTAAATCCCTAA
1 ACCCTAAATCCCTAA
4110932 ACCCTAAATCCCTAA
1 ACCCTAAATCCCTAA
4110947 CTATTAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (15 bp):
ACCCTAAATCCCTAA
Found at i:4110938 original size:7 final size:8
Alignment explanation
Indices: 4110918--4110946 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
4110908 TCTAACATGA
4110918 CCCTAAAT
1 CCCTAAAT
4110926 CCCTAAA-
1 CCCTAAAT
4110933 CCCTAAAT
1 CCCTAAAT
4110941 CCCTAA
1 CCCTAA
4110947 CTATTAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (8 bp):
CCCTAAAT
Found at i:4110969 original size:7 final size:7
Alignment explanation
Indices: 4110957--4110996 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
4110947 CTATTAGCAT
4110957 CTAACCC
1 CTAACCC
4110964 CTAA--C
1 CTAACCC
4110969 CTAACCC
1 CTAACCC
4110976 CTAACCC
1 CTAACCC
4110983 CTAACCC
1 CTAACCC
*
4110990 TTAACCC
1 CTAACCC
4110997 ATAAACCTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 5 0.17
7 25 0.83
ACGTcount: A:0.30, C:0.53, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAACCC
Found at i:4110974 original size:12 final size:12
Alignment explanation
Indices: 4110957--4110995 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
4110947 CTATTAGCAT
4110957 CTAACCCCTAAC
1 CTAACCCCTAAC
4110969 CTAACCCCTAACCC
1 CTAACCCCTAA--C
*
4110983 CTAACCCTTAAC
1 CTAACCCCTAAC
4110995 C
1 C
4110996 CATAAACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 13 0.54
14 11 0.46
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (12 bp):
CTAACCCCTAAC
Found at i:4111053 original size:14 final size:14
Alignment explanation
Indices: 4110988--4111062 Score: 60
Period size: 14 Copynumber: 5.1 Consensus size: 14
4110978 AACCCCTAAC
* *
4110988 CCTTAACCCATAAA
1 CCTTAATCCATAAT
*
4111002 CCTTAAATCACATTAAC
1 CCTT-AATC-CA-TAAT
* *
4111019 CCTTAAACCAGAAT
1 CCTTAATCCATAAT
*
4111033 CCCTAATCCATAAT
1 CCTTAATCCATAAT
4111047 CCTTAATTCCATAAT
1 CCTTAA-TCCATAAT
4111062 C
1 C
4111063 TATAAAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
14 22 0.46
15 14 0.29
16 5 0.10
17 7 0.15
ACGTcount: A:0.39, C:0.32, G:0.01, T:0.28
Consensus pattern (14 bp):
CCTTAATCCATAAT
Found at i:4111136 original size:20 final size:21
Alignment explanation
Indices: 4111111--4111154 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4111101 ATCCTAAATT
*
4111111 AACCATATATA-TATACCCTA
1 AACCATATATATTAAACCCTA
*
4111131 AACCATATTTATTAAACCCTA
1 AACCATATATATTAAACCCTA
4111152 AAC
1 AAC
4111155 TATAATGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (21 bp):
AACCATATATATTAAACCCTA
Found at i:4111762 original size:115 final size:115
Alignment explanation
Indices: 4111550--4112013 Score: 653
Period size: 115 Copynumber: 4.0 Consensus size: 115
4111540 TAAATTATTT
* * * * *
4111550 TAAATCCCTAAGCATTAGCGGTGCTTACTTAAAAAA-AGCCGCTAAATCCCTGAAACCTCAGAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAAACA-CCGCTAAATCCCCGAAAGCTCAGAAA
* *
4111614 ACAACGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCAC
65 ACGACGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
*
4111665 TAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAAACACCGCTAAATCCCCGAAAGCTCAAAAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAA
* *
4111730 CGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAGCAAAAACGCCGC
66 CGACGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
* * * * * *
4111780 TAAAGCGTCTGAGCATTAGCGGCACTTAATT-AAAAACGCCGCAAAATCCCTGAAAGCTCAGAAA
1 TAAAGC-CCTGAGCATTAGCGGCGCTTACTTAAAAAACACCGCTAAATCCCCGAAAGCTCAGAAA
* *
4111844 ATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
65 ACGACGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
* * * * * ** *
4111895 TAAAGCCCTGGGTATTAGTGTCGCTTCCCGAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAA
*
4111960 CGACGTCGTTGGGATTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
66 CGACGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
4112010 TAAA
1 TAAA
4112014 TCCCCGAAAG
Statistics
Matches: 312, Mismatches: 34, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
114 14 0.04
115 276 0.88
116 22 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (115 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAA
CGACGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGC
Found at i:4112008 original size:73 final size:73
Alignment explanation
Indices: 4111926--4112068 Score: 259
Period size: 73 Copynumber: 2.0 Consensus size: 73
4111916 CGCTTCCCGA
*
4111926 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
*
4111991 GCTTTATC
66 ACTTTATC
*
4111999 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
4112064 ACTTT
66 ACTTT
4112069 CGCAAAATCG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (73 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
ACTTTATC
Found at i:4112044 original size:188 final size:187
Alignment explanation
Indices: 4111811--4112182 Score: 541
Period size: 188 Copynumber: 2.0 Consensus size: 187
4111801 GCACTTAATT
* * * *
4111811 AAAAACGCCGCAAAATCCCTGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
1 AAAAACGCCGCAAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
* * * * *
4111876 GCTTTATCAAAAACGCCGCTAAAGCCCTGGGTATTAGTGTCGCTTC-CCGAAAAAACGCCGCTAA
66 ACTTTAGCAAAAACGCCGCTAAAGCCCTGGGCATTAGCGGCGCTTCTCC-AAAAAA-GCCGCTAA
* *
4111940 ATCCCCGAAAGCTCAGAAAACGACGTCGTT-GGGATTAGGTTTTTTTGTGGCGCTTTATC
129 ATCCCCGAAAGCTCAGAAAACGACATCGTTAGGCATTAGG-TTTTTTGTGGCGCTTTATC
*
4111999 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
1 AAAAACGCCGCAAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
* * * *
4112064 ACTTTCGCAAAATCGCTGCTAATGCCCTGGGCATTAGCGGCGCTTCTCCAAAAAAGCCGCTAAAT
66 ACTTTAGCAAAAACGCCGCTAAAGCCCTGGGCATTAGCGGCGCTTCTCCAAAAAAGCCGCTAAAT
* *
4112129 CCCCGAAAGCTCAGAAAACGGCATCGTTAGGCTTTAGGTTTTTTGTGGCGCTTT
131 CCCCGAAAGCTCAGAAAACGACATCGTTAGGCATTAGGTTTTTTGTGGCGCTTT
4112183 CGCAAAAAGA
Statistics
Matches: 164, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
187 52 0.32
188 110 0.67
189 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (187 bp):
AAAAACGCCGCAAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
ACTTTAGCAAAAACGCCGCTAAAGCCCTGGGCATTAGCGGCGCTTCTCCAAAAAAGCCGCTAAAT
CCCCGAAAGCTCAGAAAACGACATCGTTAGGCATTAGGTTTTTTGTGGCGCTTTATC
Found at i:4112075 original size:73 final size:73
Alignment explanation
Indices: 4111926--4112085 Score: 257
Period size: 73 Copynumber: 2.2 Consensus size: 73
4111916 CGCTTCCCGA
*
4111926 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
* *
4111991 GCTTTATC
66 ACTTTAGC
*
4111999 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
*
4112064 ACTTTCGC
66 ACTTTAGC
* *
4112072 AAAATCGCTGCTAA
1 AAAAACGCCGCTAA
4112086 TGCCCTGGGC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 80 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (73 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGC
ACTTTAGC
Found at i:4112188 original size:114 final size:111
Alignment explanation
Indices: 4111988--4112316 Score: 408
Period size: 114 Copynumber: 2.9 Consensus size: 111
4111978 GTTTTTTTGT
** * *
4111988 GGCGCTTTATCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGT
1 GGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCATCGTT-GGCTTAGG-
* * *
4112053 TTTTTTGTGGCACTTTCGCAAAATCGCTGCTAATGCCCTGGGCATTAGC
64 TTTTTTGTGGCGCTTTCGCAAAA-CGCCGCTAATGCCCTGAGCATTAGC
* *
4112102 GGCGCTT-CTCCAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTAGGCTTTAG
1 GGCGCTTCCT-CAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCATCGTT-GGC-TTAG
* * *
4112166 GTTTTTTGTGGCGCTTTCGCAAAAAGACCACTAAAGCCCTGAGCATTAGC
63 GTTTTTTGTGGCGCTTTCGCAAAACG-CCGCTAATGCCCTGAGCATTAGC
* *
4112216 GGCGCTTCCTTAAAAACGCCGCTAAATCCCCCGAAAGCTCAAAAAACGGCATCGTTGGGCTTAAG
1 GGCGCTTCCTCAAAAACGCCGCTAAAT-CCCCGAAAGCTCAAAAAACGGCATCGTT-GGCTTAGG
* * *
4112281 TATTTTGCGGCGCTTTCTGGAAAACGCCGCTAATGC
64 TTTTTTGTGGCGCTTTC-GCAAAACGCCGCTAATGC
4112317 TTATTTTCAG
Statistics
Matches: 186, Mismatches: 23, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
113 2 0.01
114 141 0.76
115 43 0.23
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (111 bp):
GGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCATCGTTGGCTTAGGTT
TTTTGTGGCGCTTTCGCAAAACGCCGCTAATGCCCTGAGCATTAGC
Found at i:4112250 original size:302 final size:302
Alignment explanation
Indices: 4111696--4112313 Score: 823
Period size: 302 Copynumber: 2.0 Consensus size: 302
4111686 CGCTTACTTA
* *
4111696 AAAAACACCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
* * * *
4111761 GCTTTAGCAAAAACGCCGCTAAAGCGTCTGAGCATTAGCGGCACTTAATTAAAAACGCCGCAAAA
66 ACTTTAGCAAAAACGCCGCTAAAGCGCCTGAGCATTAGCGGCACTTAATCAAAAAAGCCGCAAAA
* * * * *
4111826 TCCCTGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACG
131 TCCCCGAAAGCTCAGAAAACGGCATCGTTAGGCTTAGGTTTTTTTGTGGCGCTTTAGCAAAAACG
* * * * * *
4111891 CCGCTAAAGCCCTGGGTATTAGTGTCGCTTCCCGAAAAAACGCCGCTAAATCCCCGAAAGCTCAG
196 CCACTAAAGCCCTGAGCATTAGCGGCGCTTCCCGAAAAAACGCCGCTAAATCCCCGAAAGCTCAA
* * * *
4111956 AAAACGACGTCGTTGGGATTAGGTTTTTTTGTGGCGCTTTATC
261 AAAACGACATCGTTGGGATTAAG-TATTTTGCGGCGCTTTATC
4111999 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
* * * * * * * *
4112064 ACTTTCGCAAAATCGCTGCTAATGC-CCTGGGCATTAGCGGCGCTT-CTCCAAAAAAGCCGCTAA
66 ACTTTAGCAAAAACGCCGCTAAAGCGCCTGAGCATTAGCGGCACTTAAT-CAAAAAAGCCGCAAA
*
4112127 ATCCCCGAAAGCTCAGAAAACGGCATCGTTAGGCTTTAGG-TTTTTTGTGGCGCTTTCGCAAAAA
130 ATCCCCGAAAGCTCAGAAAACGGCATCGTTAGGC-TTAGGTTTTTTTGTGGCGCTTTAGCAAAAA
**
4112191 -GACCACTAAAGCCCTGAGCATTAGCGGCGCTT-CCTTAAAAACGCCGCTAAATCCCCCGAAAGC
194 CG-CCACTAAAGCCCTGAGCATTAGCGGCGCTTCCCGAAAAAACGCCGCTAAAT-CCCCGAAAGC
* * * *
4112254 TCAAAAAACGGCATCGTTGGGCTTAAGTATTTTGCGGCGCTTTCTG
257 TCAAAAAACGACATCGTTGGGATTAAGTATTTTGCGGCGCTTTATC
*
4112300 GAAAACGCCGCTAA
1 AAAAACGCCGCTAA
4112314 TGCTTATTTT
Statistics
Matches: 274, Mismatches: 37, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
301 48 0.18
302 138 0.50
303 88 0.32
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (302 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGATTAGGTTTTTTTGTGGC
ACTTTAGCAAAAACGCCGCTAAAGCGCCTGAGCATTAGCGGCACTTAATCAAAAAAGCCGCAAAA
TCCCCGAAAGCTCAGAAAACGGCATCGTTAGGCTTAGGTTTTTTTGTGGCGCTTTAGCAAAAACG
CCACTAAAGCCCTGAGCATTAGCGGCGCTTCCCGAAAAAACGCCGCTAAATCCCCGAAAGCTCAA
AAAACGACATCGTTGGGATTAAGTATTTTGCGGCGCTTTATC
Found at i:4112960 original size:2 final size:2
Alignment explanation
Indices: 4112953--4112981 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4112943 TTCAAAGACA
4112953 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4112982 CGTATCATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4123062 original size:21 final size:22
Alignment explanation
Indices: 4123026--4123067 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
4123016 CTCCAAAACA
*
4123026 AGGGAAAATGGGTTA-CATTTT
1 AGGGAAAATGGCTTACCATTTT
*
4123047 AGGGAAAATGTCTTACCATTT
1 AGGGAAAATGGCTTACCATTT
4123068 CAATTTCCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (22 bp):
AGGGAAAATGGCTTACCATTTT
Found at i:4123309 original size:34 final size:34
Alignment explanation
Indices: 4123252--4123317 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
4123242 CAAACACCAG
*
4123252 AAAATATTTTCCAGTAAATCATTTTACAGGAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GGAAAGT
4123287 AAAACATTTTCCAG-AAATCATTTTACGGAAA
1 AAAACATTTTCCAGTAAATCATTTTACGGAAA
4123318 ATATTTTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGGAAAGT
Found at i:4127729 original size:14 final size:14
Alignment explanation
Indices: 4127710--4127738 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4127700 TCACACACGG
4127710 CTGAGACACACGCC
1 CTGAGACACACGCC
4127724 CTGAGACACACGCC
1 CTGAGACACACGCC
4127738 C
1 C
4127739 GTGTCTCTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.45, G:0.21, T:0.07
Consensus pattern (14 bp):
CTGAGACACACGCC
Done.