Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30015117
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1306243 characters in sequence are not A, C, G, or T
File 19 of 85
Found at i:6250239 original size:30 final size:30
Alignment explanation
Indices: 6250203--6250259 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
6250193 TTGGAGTGGC
6250203 AAAAATTGAATATCAAATATTTAGTTTATA
1 AAAAATTGAATATCAAATATTTAGTTTATA
*
6250233 AAAAATTGAATATCAAATCTTTAGTTT
1 AAAAATTGAATATCAAATATTTAGTTT
6250260 TAACCACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (30 bp):
AAAAATTGAATATCAAATATTTAGTTTATA
Found at i:6252619 original size:3 final size:3
Alignment explanation
Indices: 6252562--6252600 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
6252552 ATAATGAACA
6252562 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6252601 CTGATTACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6252722 original size:12 final size:12
Alignment explanation
Indices: 6252705--6252730 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6252695 AAATGTCGAA
6252705 AAATAATAAAAT
1 AAATAATAAAAT
6252717 AAATAATAAAAT
1 AAATAATAAAAT
6252729 AA
1 AA
6252731 CGAGAGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAAAAT
Found at i:6253383 original size:219 final size:219
Alignment explanation
Indices: 6253004--6253449 Score: 883
Period size: 219 Copynumber: 2.0 Consensus size: 219
6252994 TTCTAATTCC
6253004 AAAAATAATGAACATTTTCCTCAGTTTAAAAATTTTCTTTTTTATGCATCGTGCGAAGAAACAAA
1 AAAAATAATGAACATTTTCCTCAGTTTAAAAATTTTCTTTTTTATGCATCGTGCGAAGAAACAAA
6253069 CGTAACACTTAAAACGACATGCATTTAACTTATTCGGACATGATATACAAATGGATAAATGCTTA
66 CGTAACACTTAAAACGACATGCATTTAACTTATTCGGACATGATATACAAATGGATAAATGCTTA
6253134 GAACTAATGTATGATATAGTGAAAATGAAATAATTCAAAATGGCCATGTGGGTAGAATGATAAAT
131 GAACTAATGTATGATATAGTGAAAATGAAATAATTCAAAATGGCCATGTGGGTAGAATGATAAAT
6253199 AATAAGTAAATAAAGGAGTACTAT
196 AATAAGTAAATAAAGGAGTACTAT
6253223 AAAAATAATGAACATTTTCCTCAGTTTAAAAATTTTCTTTTTTATGCATCGTGCGAAGAAACAAA
1 AAAAATAATGAACATTTTCCTCAGTTTAAAAATTTTCTTTTTTATGCATCGTGCGAAGAAACAAA
6253288 CGTAACACTTAAAACGACATGCATTTAACTTATTCGGACATGATATACAAATGGATAAATGCTTA
66 CGTAACACTTAAAACGACATGCATTTAACTTATTCGGACATGATATACAAATGGATAAATGCTTA
6253353 GAACTAATGTATGATATAGTGAAAATGAAATAATTCAAAATGGCCATGTGGGTAGAATGATAAAT
131 GAACTAATGTATGATATAGTGAAAATGAAATAATTCAAAATGGCCATGTGGGTAGAATGATAAAT
6253418 AATAAGTAAATAAAGGAGTACTAT
196 AATAAGTAAATAAAGGAGTACTAT
*
6253442 AATAATAA
1 AAAAATAA
6253450 CATAATAATA
Statistics
Matches: 226, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 226 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.30
Consensus pattern (219 bp):
AAAAATAATGAACATTTTCCTCAGTTTAAAAATTTTCTTTTTTATGCATCGTGCGAAGAAACAAA
CGTAACACTTAAAACGACATGCATTTAACTTATTCGGACATGATATACAAATGGATAAATGCTTA
GAACTAATGTATGATATAGTGAAAATGAAATAATTCAAAATGGCCATGTGGGTAGAATGATAAAT
AATAAGTAAATAAAGGAGTACTAT
Found at i:6253448 original size:3 final size:3
Alignment explanation
Indices: 6253440--6253495 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
6253430 AAGGAGTACT
* * * *
6253440 ATA ATA ATA A-C ATA ATA ATA ATA ATA TTA ATA TTA ATA ATCA CATC
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A -ATA
6253486 ATA ATA ATA A
1 ATA ATA ATA A
6253496 AAAAATAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 1 0.02
3 38 0.90
4 1 0.02
5 2 0.05
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6253459 original size:14 final size:15
Alignment explanation
Indices: 6253440--6253478 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
6253430 AAGGAGTACT
6253440 ATAATAATAACA-TA
1 ATAATAATAACATTA
*
6253454 ATAATAATAATATTA
1 ATAATAATAACATTA
*
6253469 ATATTAATAA
1 ATAATAATAA
6253479 TCACATCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAATAATAACATTA
Found at i:6253605 original size:28 final size:28
Alignment explanation
Indices: 6253569--6253626 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
6253559 AATATAAATA
6253569 AATAATGAGCAAAAAATGTACAAATATG
1 AATAATGAGCAAAAAATGTACAAATATG
*
6253597 AATAATGAGCGAAAAATGTACAAATATG
1 AATAATGAGCAAAAAATGTACAAATATG
6253625 AA
1 AA
6253627 CAACATAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.57, C:0.07, G:0.16, T:0.21
Consensus pattern (28 bp):
AATAATGAGCAAAAAATGTACAAATATG
Found at i:6253830 original size:12 final size:12
Alignment explanation
Indices: 6253813--6253837 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6253803 ACTATAAGTC
6253813 ATAATAAAATAA
1 ATAATAAAATAA
6253825 ATAATAAAATAA
1 ATAATAAAATAA
6253837 A
1 A
6253838 ATAAAGGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATAAAATAA
Found at i:6254487 original size:3 final size:3
Alignment explanation
Indices: 6254415--6254468 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
6254405 ATAGTTTTAA
6254415 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6254463 AAT AAT
1 AAT AAT
6254469 CTGATTACAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6254680 original size:113 final size:111
Alignment explanation
Indices: 6254548--6254754 Score: 387
Period size: 113 Copynumber: 1.8 Consensus size: 111
6254538 AAAAGGATAA
6254548 ATAAACATGACATGAAAATGTCGAAAAAAAATAAAATAAATAATAAAATAACGAGAAAAGAAATA
1 ATAAACATGACATGAAAATGTCGAAAAAAAATAAAATAAATAATAAAATAACGAGAAAAGAAATA
6254613 AAAATAAAATGATAATGACAATAATAAAAAAATACACAAATAAAGAGT
66 AAAATAAAATGATAAT--CAATAATAAAAAAATACACAAATAAAGAGT
*
6254661 ATAAACATGACATGAAAATGTCGAAAAATAATAAAATAAATAATAAAATAACGAGAAAAGAAATA
1 ATAAACATGACATGAAAATGTCGAAAAAAAATAAAATAAATAATAAAATAACGAGAAAAGAAATA
6254726 AAAATAAAATGATAATCAATAATAAAAAA
66 AAAATAAAATGATAATCAATAATAAAAAA
6254755 TAAATAATAA
Statistics
Matches: 93, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
111 13 0.14
113 80 0.86
ACGTcount: A:0.67, C:0.06, G:0.09, T:0.18
Consensus pattern (111 bp):
ATAAACATGACATGAAAATGTCGAAAAAAAATAAAATAAATAATAAAATAACGAGAAAAGAAATA
AAAATAAAATGATAATCAATAATAAAAAAATACACAAATAAAGAGT
Found at i:6254740 original size:29 final size:29
Alignment explanation
Indices: 6254708--6254798 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 29
6254698 AAATAATAAA
6254708 ATAACGAGAAAAGAAATAAAAATAAAATG
1 ATAACGAGAAAAGAAATAAAAATAAAATG
* * *
6254737 ATAATCAATAATAAAAAATAAATAAT-AAA--
1 ATAA-CGAGAA-AAGAAATAAA-AATAAAATG
6254766 ATAACGAGAAAAGAAATAAAAATAAAATG
1 ATAACGAGAAAAGAAATAAAAATAAAATG
6254795 ATAA
1 ATAA
6254799 TGACAATAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
26 3 0.06
27 12 0.24
28 4 0.08
29 12 0.24
30 4 0.08
31 12 0.24
32 3 0.06
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.18
Consensus pattern (29 bp):
ATAACGAGAAAAGAAATAAAAATAAAATG
Found at i:6254762 original size:58 final size:59
Alignment explanation
Indices: 6254687--6254814 Score: 231
Period size: 58 Copynumber: 2.2 Consensus size: 59
6254677 AATGTCGAAA
6254687 AATAATAAAATAAATAATAAAATAACGAGAAAAGAAATAAAAATAAAATGATAAT-CAAT
1 AATAA-AAAATAAATAATAAAATAACGAGAAAAGAAATAAAAATAAAATGATAATACAAT
6254746 AATAAAAAATAAATAATAAAATAACGAGAAAAGAAATAAAAATAAAATGATAATGACAAT
1 AATAAAAAATAAATAATAAAATAACGAGAAAAGAAATAAAAATAAAATGATAAT-ACAAT
6254806 AATAAAAAA
1 AATAAAAAA
6254815 ATACACAAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
58 49 0.73
59 5 0.07
60 13 0.19
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (59 bp):
AATAAAAAATAAATAATAAAATAACGAGAAAAGAAATAAAAATAAAATGATAATACAAT
Found at i:6254815 original size:29 final size:29
Alignment explanation
Indices: 6254725--6254815 Score: 82
Period size: 29 Copynumber: 3.1 Consensus size: 29
6254715 GAAAAGAAAT
6254725 AAAAATAAAATGATAAT--CAATAATAAAA
1 AAAAATAAAATGATAATGACAATAAT-AAA
* * * *
6254753 AATAAATAATAA-AATAACGAGAA-AAGAAA
1 AA-AAATAA-AATGATAATGACAATAATAAA
6254782 TAAAAATAAAATGATAATGACAATAATAAA
1 -AAAAATAAAATGATAATGACAATAATAAA
6254812 AAAA
1 AAAA
6254816 TACACAAATA
Statistics
Matches: 48, Mismatches: 8, Indels: 13
0.70 0.12 0.19
Matches are distributed among these distances:
28 4 0.08
29 31 0.65
30 11 0.23
31 2 0.04
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (29 bp):
AAAAATAAAATGATAATGACAATAATAAA
Found at i:6257265 original size:72 final size:71
Alignment explanation
Indices: 6257136--6257268 Score: 187
Period size: 72 Copynumber: 1.9 Consensus size: 71
6257126 GGAAAGATCT
** * * *
6257136 GCTATTTTAGCCTGCTCTGCTGCAACCCAGTGAGGTAAGGCTGGGGACCTTGGTCTGCTTCTTGT
1 GCTATTTTAGCCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGGGACCTTGATCTGCTTCTTGT
6257201 CGGTGA
66 CGGTGA
*
6257207 GCTATTTTTAGCCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGA-CTTCGATCTGCTTC
1 GCTA-TTTTAGCCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGGGACCTT-GATCTGCTTC
6257269 GCTGTCAGTG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
71 7 0.13
72 47 0.87
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.29
Consensus pattern (71 bp):
GCTATTTTAGCCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGGGACCTTGATCTGCTTCTTGT
CGGTGA
Found at i:6257358 original size:88 final size:88
Alignment explanation
Indices: 6257209--6257387 Score: 268
Period size: 88 Copynumber: 2.0 Consensus size: 88
6257199 GTCGGTGAGC
* * *
6257209 TATTTTTAGCCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGACTTCGATCTGCTTCGCTGT
1 TATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGACTTCGATCTACTTCGCTGC
*
6257274 CAGTGCAGGAAGGCAAGATCTGT
66 CAGTACAGGAAGGCAAGATCTGT
* * * *
6257297 TATTTTTAACCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTTGATCTACTTCGCTGC
1 TATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGACTTCGATCTACTTCGCTGC
* *
6257362 CAGTACAGGAATGCAATATCTGT
66 CAGTACAGGAAGGCAAGATCTGT
6257385 TAT
1 TAT
6257388 CTTCACTGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (88 bp):
TATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGACTTCGATCTACTTCGCTGC
CAGTACAGGAAGGCAAGATCTGT
Found at i:6258705 original size:20 final size:21
Alignment explanation
Indices: 6258667--6258705 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
6258657 CACTTTCATT
* *
6258667 TTTTTATTTTGATTTTGAAAC
1 TTTTTATTTTGAATCTGAAAC
6258688 TTTTT-TTTTGAATCTGAA
1 TTTTTATTTTGAATCTGAA
6258706 CTCATAGGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTTTATTTTGAATCTGAAAC
Found at i:6267688 original size:21 final size:21
Alignment explanation
Indices: 6267639--6267736 Score: 130
Period size: 21 Copynumber: 4.7 Consensus size: 21
6267629 AAATTAAATT
*
6267639 TCTAAGATTACA-AAATCATA
1 TCTAAGATTGCATAAATCATA
6267659 TCTTCTAAGATTGCATAAATCATA
1 ---TCTAAGATTGCATAAATCATA
*
6267683 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATAAATCATA
6267704 TCTAAGATTGCAT--ATCATA
1 TCTAAGATTGCATAAATCATA
6267723 TCTAAGATTGCATA
1 TCTAAGATTGCATA
6267737 TCCTCGAAGA
Statistics
Matches: 71, Mismatches: 2, Indels: 7
0.89 0.03 0.09
Matches are distributed among these distances:
19 19 0.27
21 33 0.46
23 11 0.15
24 8 0.11
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (21 bp):
TCTAAGATTGCATAAATCATA
Found at i:6267748 original size:17 final size:18
Alignment explanation
Indices: 6267665--6267748 Score: 62
Period size: 21 Copynumber: 4.3 Consensus size: 18
6267655 CATATCTTCT
*
6267665 AAGATTGCATAAATCATATCT
1 AAGATTGCAT--ATCA-ATCG
*
6267686 AAGATTGCATATATCATATCT
1 AAGATTGC--ATATCA-ATCG
*
6267707 AAGATTGCATATCATATCT
1 AAGATTGCATATCA-ATCG
*
6267726 AAGATTGCATATC-CTCG
1 AAGATTGCATATCAATCG
6267743 AAGATT
1 AAGATT
6267749 ATGTTTCCAT
Statistics
Matches: 59, Mismatches: 2, Indels: 8
0.86 0.03 0.12
Matches are distributed among these distances:
17 8 0.14
19 24 0.41
21 25 0.42
23 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
AAGATTGCATATCAATCG
Found at i:6267919 original size:21 final size:22
Alignment explanation
Indices: 6267889--6267930 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
6267879 TGTTTTCTCT
6267889 TTTTTCATTTGAGGTTGTAATA
1 TTTTTCATTTGAGGTTGTAATA
* *
6267911 TTTTT-ATTTTAGTTTGTAAT
1 TTTTTCATTTGAGGTTGTAAT
6267931 TTATTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.21, C:0.02, G:0.14, T:0.62
Consensus pattern (22 bp):
TTTTTCATTTGAGGTTGTAATA
Found at i:6275001 original size:98 final size:98
Alignment explanation
Indices: 6274879--6275073 Score: 302
Period size: 98 Copynumber: 2.0 Consensus size: 98
6274869 ATATAAAAAT
* * *
6274879 TTTAAAATAGCATCCATTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACGATCCC
1 TTTAAAAGAACATCCATTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATCCC
*
6274944 TTTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TTTAGAATCCCAAACTCGGAAAATTTCCTTTAC
* * *
6274977 TTTAAAAGAACATCCACTT-ATCCAAGATTTAAGAAATCACACCCAATATGTTAGGGCACAATTC
1 TTTAAAAGAACATCCA-TTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATCC
*
6275041 CTTTAGAATCTCAAACTCGGAAAATTTCCTTTA
65 CTTTAGAATCCCAAACTCGGAAAATTTCCTTTA
6275074 TGATTTTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
98 86 0.98
99 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (98 bp):
TTTAAAAGAACATCCATTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATCCC
TTTAGAATCCCAAACTCGGAAAATTTCCTTTAC
Found at i:6286306 original size:19 final size:20
Alignment explanation
Indices: 6286269--6286306 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
6286259 TATAAGAAAA
*
6286269 CTTTACTATAAATTAAATTC
1 CTTTACTATAAAATAAATTC
*
6286289 CTTTA-TATAAAATGAATT
1 CTTTACTATAAAATAAATT
6286307 ACAAATACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.45
Consensus pattern (20 bp):
CTTTACTATAAAATAAATTC
Found at i:6289547 original size:98 final size:98
Alignment explanation
Indices: 6289376--6289572 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 98
6289366 AAACAATAAA
* *
6289376 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATC
* * *
6289441 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTATAGAATCCCAAACTCAGAAAATTTCCTTT
* * *
6289474 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATC
*
6289539 CCTATAGAATCTCAAACTCAGAAAATTTCCTTT
66 CCTATAGAATCCCAAACTCAGAAAATTTCCTTT
6289572 A
1 A
6289573 TGATTTTTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.39, C:0.25, G:0.10, T:0.26
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATC
CCTATAGAATCCCAAACTCAGAAAATTTCCTTT
Found at i:6292376 original size:109 final size:108
Alignment explanation
Indices: 6292176--6292379 Score: 286
Period size: 109 Copynumber: 1.9 Consensus size: 108
6292166 GACACAAAGT
* * * ** *
6292176 CGTGTCCCAGCCCGTGTGTGCATTCAATGTTGGTCACACGACCGTGTCGTAGGTCATGTTTTAGA
1 CGTGTCCCAGCCCGTGTGTGCATTCAATGTTGGTCACACGACCATGTCGTAAGCCATGCCTCAGA
*
6292241 TCGTGTAACTAATCATTTTAAGACACACGGTCTTGTGGCAAGC
66 CCGTGTAACTAATCATTTTAAGACACACGGTCTTGTGGCAAGC
* *
6292284 CGTGTCCCAGCCCGTGTGTGCATTCAATGTTGGGTCACACGGCCATGTC-TCAAGCCGTGCCTCA
1 CGTGTCCCAGCCCGTGTGTGCATTCAATGTT-GGTCACACGACCATGTCGT-AAGCCATGCCTCA
6292348 GACCGTGTAACTAA-CTATTTTAAGACACACGG
64 GACCGTGTAACTAATC-ATTTTAAGACACACGG
6292380 CCGTGTCGCA
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
108 33 0.39
109 51 0.61
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (108 bp):
CGTGTCCCAGCCCGTGTGTGCATTCAATGTTGGTCACACGACCATGTCGTAAGCCATGCCTCAGA
CCGTGTAACTAATCATTTTAAGACACACGGTCTTGTGGCAAGC
Found at i:6293627 original size:34 final size:35
Alignment explanation
Indices: 6293553--6293627 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 35
6293543 GGATAAACCG
*
6293553 ACTAGTCGAATAAATCAACAAAGATTGTGCCCAAC
1 ACTAGTCGAATAAACCAACAAAGATTGTGCCCAAC
* * **
6293588 GCTAGTCGAAT-AACCGACAATAG-TTGTGCCCTGC
1 ACTAGTCGAATAAACCAACAA-AGATTGTGCCCAAC
6293622 ACTAGT
1 ACTAGT
6293628 TGGATGTGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 21 0.64
35 12 0.36
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.23
Consensus pattern (35 bp):
ACTAGTCGAATAAACCAACAAAGATTGTGCCCAAC
Found at i:6300650 original size:18 final size:16
Alignment explanation
Indices: 6300616--6300651 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
6300606 TAATATAATA
6300616 TATTTTTAATAACTTT
1 TATTTTTAATAACTTT
6300632 TATTTTGTAATATACTTT
1 TATTTT-TAATA-ACTTT
6300650 TA
1 TA
6300652 AAAACCCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (16 bp):
TATTTTTAATAACTTT
Found at i:6307574 original size:6 final size:6
Alignment explanation
Indices: 6307565--6307593 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
6307555 ATCCCTCCAT
6307565 CTCCTG CTCCTG CTCCTG CTCCTG CTCCT
1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCT
6307594 TTCTCTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.14, T:0.34
Consensus pattern (6 bp):
CTCCTG
Found at i:6321941 original size:35 final size:37
Alignment explanation
Indices: 6321869--6321942 Score: 116
Period size: 39 Copynumber: 2.0 Consensus size: 37
6321859 GAAAGATGGG
6321869 GTTTGTAACTGTTCTAACTGAAATGGAACCCTTTCTTCA
1 GTTTGTAACTGTTCTAACTGAAA--GAACCCTTTCTTCA
6321908 GTTTGTAACTGTTCTAACTG-AA-AACCCTTTCTTCA
1 GTTTGTAACTGTTCTAACTGAAAGAACCCTTTCTTCA
6321943 TAGACTGGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
35 13 0.37
38 2 0.06
39 20 0.57
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.39
Consensus pattern (37 bp):
GTTTGTAACTGTTCTAACTGAAAGAACCCTTTCTTCA
Found at i:6324332 original size:29 final size:29
Alignment explanation
Indices: 6324300--6324359 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
6324290 ATATAGGAAG
6324300 ACACATTTTAACAATAAAAAGAATATAAA
1 ACACATTTTAACAATAAAAAGAATATAAA
6324329 ACACATTTTAACAATAAAAAGAATATAAA
1 ACACATTTTAACAATAAAAAGAATATAAA
6324358 AC
1 AC
6324360 TTACAAGAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.23
Consensus pattern (29 bp):
ACACATTTTAACAATAAAAAGAATATAAA
Found at i:6325138 original size:16 final size:17
Alignment explanation
Indices: 6325112--6325146 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
6325102 TTGCTTTTTG
6325112 TTTTTAGTTTTTTATTT
1 TTTTTAGTTTTTTATTT
6325129 TTTTTA-TTTTTTATTT
1 TTTTTAGTTTTTTATTT
6325145 TT
1 TT
6325147 ATTTTGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (17 bp):
TTTTTAGTTTTTTATTT
Found at i:6328652 original size:24 final size:24
Alignment explanation
Indices: 6328616--6328670 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
6328606 GAATGTTTAC
* *
6328616 ATTTTTTTATT-AATTTGATTC-TT
1 ATTTTTTAATTAAATTTG-GTCATT
6328639 ATTTTTTAAGTTAAATTTGGTCATT
1 ATTTTTTAA-TTAAATTTGGTCATT
6328664 ATTTTTT
1 ATTTTTT
6328671 TTAAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 8 0.30
24 4 0.15
25 15 0.56
ACGTcount: A:0.24, C:0.04, G:0.07, T:0.65
Consensus pattern (24 bp):
ATTTTTTAATTAAATTTGGTCATT
Found at i:6333753 original size:12 final size:12
Alignment explanation
Indices: 6333738--6333768 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
6333728 GTGTCGCAGT
6333738 CCGTGTCCATAC
1 CCGTGTCCATAC
*
6333750 CCGTGTTCATAC
1 CCGTGTCCATAC
6333762 CCGTGTC
1 CCGTGTC
6333769 ACTCTCTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.39, G:0.19, T:0.29
Consensus pattern (12 bp):
CCGTGTCCATAC
Found at i:6333935 original size:42 final size:42
Alignment explanation
Indices: 6333857--6333937 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
6333847 GTGCAAGGAA
*
6333857 CACACGGCCAAACCACACGCCCGTGCGCATGGCCGTGTGTCG
1 CACACGGCCAAACCACACGCCCGTGCGCATGCCCGTGTGTCG
* *
6333899 CACACGGCTAAGA-CACACGCCCGTGTCTC-TGCCCGTGTG
1 CACACGGCCAA-ACCACACGCCCGTG-CGCATGCCCGTGTG
6333938 GACGAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 31 0.91
43 3 0.09
ACGTcount: A:0.19, C:0.40, G:0.27, T:0.15
Consensus pattern (42 bp):
CACACGGCCAAACCACACGCCCGTGCGCATGCCCGTGTGTCG
Found at i:6337803 original size:25 final size:25
Alignment explanation
Indices: 6337775--6337836 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
6337765 TGTGCCTAGG
* **
6337775 AGGCTTTATGCCGGTGAATTTTATC
1 AGGCTTTATGCCAGTGAATTAGATC
* *
6337800 AGGCTTTATGCTAGTGTATTAGATC
1 AGGCTTTATGCCAGTGAATTAGATC
6337825 AGGCTTTATGCC
1 AGGCTTTATGCC
6337837 TAGCAGGCTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (25 bp):
AGGCTTTATGCCAGTGAATTAGATC
Found at i:6346656 original size:25 final size:25
Alignment explanation
Indices: 6346556--6346649 Score: 95
Period size: 25 Copynumber: 3.6 Consensus size: 25
6346546 TTCGTATTCG
*
6346556 GGAATGCTCATACGAGCACATA-AACA
1 GGAA-GCTCATTCGAGC-CATATAACA
*
6346582 GGAAGCTCTCTTTCGAGCCATATAAC-
1 GGAAG--CTCATTCGAGCCATATAACA
6346608 GTGAAGCTCATGT-GAGCCATATAACA
1 G-GAAGCTCAT-TCGAGCCATATAACA
6346634 GGAAGCTCATTCGAGC
1 GGAAGCTCATTCGAGC
6346650 TGTATAAAGG
Statistics
Matches: 58, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
24 1 0.02
25 30 0.52
26 11 0.19
27 16 0.28
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.21
Consensus pattern (25 bp):
GGAAGCTCATTCGAGCCATATAACA
Found at i:6357532 original size:50 final size:50
Alignment explanation
Indices: 6357478--6357584 Score: 112
Period size: 50 Copynumber: 2.1 Consensus size: 50
6357468 AGACTCATGT
* **
6357478 GAGCTGTATAA-CGGGAAGCTTATGA-GAGCCATAA-ATCAGGTAGCTCAAGA
1 GAGCTGT-TAATCGGGAAGCTCAT-ACGAGCCA-AATATCAGAAAGCTCAAGA
* * *
6357528 GAGCTATTAATCGGGAATCTCATACGAGCCAAATATCAGAAAGCTCATGA
1 GAGCTGTTAATCGGGAAGCTCATACGAGCCAAATATCAGAAAGCTCAAGA
6357578 GAGCTGT
1 GAGCTGT
6357585 GGTGTGTCCG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
49 6 0.13
50 41 0.87
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (50 bp):
GAGCTGTTAATCGGGAAGCTCATACGAGCCAAATATCAGAAAGCTCAAGA
Found at i:6364489 original size:35 final size:35
Alignment explanation
Indices: 6364450--6364530 Score: 126
Period size: 35 Copynumber: 2.3 Consensus size: 35
6364440 TTTTAAAATG
*
6364450 GCTATAATAGTATATTCATTTGTGCTAGTTGATAA
1 GCTATAATAATATATTCATTTGTGCTAGTTGATAA
*
6364485 GCTATAATAATATATTCATTTGTGTTAGTTGATAA
1 GCTATAATAATATATTCATTTGTGCTAGTTGATAA
**
6364520 TATATAATAAT
1 GCTATAATAAT
6364531 GTATGTTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (35 bp):
GCTATAATAATATATTCATTTGTGCTAGTTGATAA
Found at i:6380352 original size:7 final size:7
Alignment explanation
Indices: 6380340--6380382 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
6380330 CTTTGATCGT
6380340 ACTGCTC
1 ACTGCTC
6380347 ACTGCTC
1 ACTGCTC
6380354 ACTGCTC
1 ACTGCTC
6380361 ACTGCTC
1 ACTGCTC
6380368 ACTGCTC
1 ACTGCTC
6380375 ACTGCTC
1 ACTGCTC
6380382 A
1 A
6380383 GTTTTCTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.16, C:0.42, G:0.14, T:0.28
Consensus pattern (7 bp):
ACTGCTC
Found at i:6389900 original size:18 final size:18
Alignment explanation
Indices: 6389877--6389912 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6389867 CCTTGGTCTC
6389877 CAAGTAAAAAGATAAGGA
1 CAAGTAAAAAGATAAGGA
*
6389895 CAAGTATAAAGATAAGGA
1 CAAGTAAAAAGATAAGGA
6389913 TAGAATAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.22, T:0.14
Consensus pattern (18 bp):
CAAGTAAAAAGATAAGGA
Found at i:6394850 original size:69 final size:68
Alignment explanation
Indices: 6394732--6395102 Score: 284
Period size: 69 Copynumber: 5.4 Consensus size: 68
6394722 TCTTATAATG
* * * * * *
6394732 TCAACTGGGAGCATAGGTCTGCGAGCTGCTTTAGAAGTTGTGATTTTAAATCGTCAAACCTTTAA
1 TCAACTGGGAGCGTAGGTCCGCTAGCTGCTTTAG-AGTTGTGATATTAAACCGTCAAACCTTTAT
6394797 GACA
65 GACA
* * * *
6394801 TCAACTGGGAGCGTATGACCGCTAGCTGCTTTAGAGTTTGCGATATTAAACCGTTAAACCTTTAT
1 TCAACTGGGAGCGTAGGTCCGCTAGCTGCTTTAGAG-TTGTGATATTAAACCGTCAAACCTTTAT
6394866 GACA
65 GACA
* * * * * * * *
6394870 TCAACTAGGAACGTAGGTTCGCTAGTTGCTTTGGAGGTTATGATCTTAAACCGTCAAACCTCTAT
1 TCAACTGGGAGCGTAGGTCCGCTAGCTGCTTTAGA-GTTGTGATATTAAACCGTCAAACCTTTAT
6394935 GACA
65 GACA
* * * * * ** * * * *
6394939 TCAACTGGGAGCGTAGGTCTGCTAGTTG-TATTGGAGCTGCGAGCTT-AACTCTTCGAGCTTTTA
1 TCAACTGGGAGCGTAGGTCCGCTAGCTGCT-TTAGAGTTGTGATATTAAAC-CGTCAAACCTTTA
6395002 T-A-A
64 TGACA
* * * * ** **
6395005 TGCCAGCTGGGAGCGTGGGTCCGCTAGCTACTTTGGAGGTTACGACCTTAAACCGTCAAACCTTT
1 T--CAACTGGGAGCGTAGGTCCGCTAGCTGCTTTAGA-GTTGTGATATTAAACCGTCAAACCTTT
6395070 ATGACA
63 ATGACA
* *
6395076 TC-AGTTGGAGCGTAGGTCCGCTAGCTG
1 TCAACTGGGAGCGTAGGTCCGCTAGCTG
6395103 TGCTGGAGCT
Statistics
Matches: 239, Mismatches: 52, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
66 2 0.01
67 4 0.02
68 66 0.28
69 160 0.67
70 5 0.02
71 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (68 bp):
TCAACTGGGAGCGTAGGTCCGCTAGCTGCTTTAGAGTTGTGATATTAAACCGTCAAACCTTTATG
ACA
Found at i:6399024 original size:21 final size:21
Alignment explanation
Indices: 6399000--6399177 Score: 144
Period size: 21 Copynumber: 8.5 Consensus size: 21
6398990 GTGTTTTACT
* *
6399000 TTCTGTTTAGCTATTACGAGC
1 TTCTGTTTAGCTCTTATGAGC
* * * *
6399021 TTCTATTTAACTCATATGAGT
1 TTCTGTTTAGCTCTTATGAGC
*
6399042 TTCTATTTAGCTCTTATGAGC
1 TTCTGTTTAGCTCTTATGAGC
* *
6399063 TTCTGTTAAACTCTTATGAG-
1 TTCTGTTTAGCTCTTATGAGC
* * *
6399083 TTTTTTTTCAGCTCTTACGAGC
1 TTCTGTTT-AGCTCTTATGAGC
* * * *
6399105 TTCTGTTCAACTCTAATCG-GT
1 TTCTGTTTAGCTCTTAT-GAGC
*
6399126 TTTTGTTTAGCTCTTATGAGC
1 TTCTGTTTAGCTCTTATGAGC
* *
6399147 TTCTATTTAGCTCTCATGAGC
1 TTCTGTTTAGCTCTTATGAGC
*
6399168 TTTTGTTTAG
1 TTCTGTTTAG
6399178 TTTTCGGGAT
Statistics
Matches: 119, Mismatches: 34, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
20 6 0.05
21 107 0.90
22 6 0.05
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTGTTTAGCTCTTATGAGC
Found at i:6399051 original size:42 final size:41
Alignment explanation
Indices: 6398999--6399177 Score: 175
Period size: 42 Copynumber: 4.3 Consensus size: 41
6398989 CGTGTTTTAC
*
6398999 TTTCTGTTTAGCTATTACGAGCTTCTATTTAACTCATATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTATTTAACTC-TATGAG
* * * *
6399041 TTTCTATTTAGCTCTTATGAGCTTCTGTTAAACTCTTATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTATTTAACTC-TATGAG
* * *
6399083 TTT-TTTTTCAGCTCTTACGAGCTTCTGTTCAACTCTAATCG-G
1 TTTCTGTTT-AGCTCTTACGAGCTTCTATTTAACTCT-AT-GAG
* * *
6399125 TTTTTGTTTAGCTCTTATGAGCTTCTATTTAGCTCTCATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTATTTAACTCT-ATGAG
6399167 CTTT-TGTTTAG
1 -TTTCTGTTTAG
6399178 TTTTCGGGAT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
41 6 0.05
42 102 0.88
43 8 0.07
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (41 bp):
TTTCTGTTTAGCTCTTACGAGCTTCTATTTAACTCTATGAG
Found at i:6399166 original size:84 final size:84
Alignment explanation
Indices: 6399008--6399171 Score: 206
Period size: 84 Copynumber: 2.0 Consensus size: 84
6398998 CTTTCTGTTT
* *
6399008 AGCTATTACGAGCTTCTATTTAACTCATATGAGTTTCTATTTAGCTCTTATGAGCTTCTGTTAAA
1 AGCTATTACGAGCTTCTATTCAACTCATATGAGTTTCTATTTAGCTCTTATGAGCTTCTATTAAA
* *
6399073 CTCTTATGAGTTTTTTTTC
66 CTCTCATGAGCTTTTTTTC
* * * * *
6399092 AGCTCTTACGAGCTTCTGTTCAACTC-TAATCG-GTTTTTGTTTAGCTCTTATGAGCTTCTATTT
1 AGCTATTACGAGCTTCTATTCAACTCAT-AT-GAGTTTCTATTTAGCTCTTATGAGCTTCTATTA
*
6399155 AGCTCTCATGAGCTTTT
64 AACTCTCATGAGCTTTT
6399172 GTTTAGTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 1 0.01
84 66 0.97
85 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (84 bp):
AGCTATTACGAGCTTCTATTCAACTCATATGAGTTTCTATTTAGCTCTTATGAGCTTCTATTAAA
CTCTCATGAGCTTTTTTTC
Found at i:6406686 original size:21 final size:21
Alignment explanation
Indices: 6406662--6406739 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
6406652 TTTTTAGCTT
6406662 TTATGAGCTTCTGTTAAACCC
1 TTATGAGCTTCTGTTAAACCC
*
6406683 TTATGAGCTTCTGTTCAACCC
1 TTATGAGCTTCTGTTAAACCC
* * * *
6406704 TTATCG-GATTCTGTTTAGCTC
1 TTAT-GAGCTTCTGTTAAACCC
6406725 TTATGAGCTTCTGTT
1 TTATGAGCTTCTGTT
6406740 CAGCTTTCGG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.02
21 47 0.96
22 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.44
Consensus pattern (21 bp):
TTATGAGCTTCTGTTAAACCC
Found at i:6406744 original size:21 final size:21
Alignment explanation
Indices: 6406657--6406744 Score: 88
Period size: 21 Copynumber: 4.2 Consensus size: 21
6406647 CTTTCTTTTT
* *
6406657 AGCTTTTATGAGCTTCTGTTA
1 AGCTCTTATGAGCTTCTGTTC
* *
6406678 AACCCTTATGAGCTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTC
* * * *
6406699 AACCCTTATCG-GATTCTGTTT
1 AGCTCTTAT-GAGCTTCTGTTC
6406720 AGCTCTTATGAGCTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTC
6406741 AGCT
1 AGCT
6406745 TTCGGGCTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
20 1 0.02
21 53 0.96
22 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTGTTC
Found at i:6428013 original size:45 final size:46
Alignment explanation
Indices: 6427946--6428069 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
6427936 CATATGACCT
*
6427946 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
6427989 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
6428035 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
6428070 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:6436346 original size:17 final size:17
Alignment explanation
Indices: 6436316--6436349 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6436306 AAAACGGGTC
**
6436316 ATATTTTTGTCCAAACT
1 ATATTTTTACCCAAACT
6436333 ATATTTTTACCCAAACT
1 ATATTTTTACCCAAACT
6436350 CTCCCACTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.44
Consensus pattern (17 bp):
ATATTTTTACCCAAACT
Found at i:6437109 original size:20 final size:21
Alignment explanation
Indices: 6437084--6437131 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
6437074 TTGCAAAAAC
6437084 TATAAAAGCTATTTAAAAATT
1 TATAAAAGCTATTTAAAAATT
***
6437105 T-TAAATTTTATTTAAAAATT
1 TATAAAAGCTATTTAAAAATT
6437125 TATAAAA
1 TATAAAA
6437132 ATATAAACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAAAAGCTATTTAAAAATT
Found at i:6437301 original size:20 final size:20
Alignment explanation
Indices: 6437251--6437292 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
6437241 AAAACATTTT
6437251 TTTTACAAA--TTTTAATAA
1 TTTTACAAATTTTTTAATAA
*
6437269 TTTTACAACTTTTTTAAT-A
1 TTTTACAAATTTTTTAATAA
6437288 TTTTA
1 TTTTA
6437293 ATAAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 8 0.38
19 6 0.29
20 7 0.33
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTACAAATTTTTTAATAA
Found at i:6437326 original size:2 final size:2
Alignment explanation
Indices: 6437319--6437352 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6437309 TTGCAATTTC
6437319 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6437353 TATTTTTTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6440384 original size:33 final size:33
Alignment explanation
Indices: 6440342--6440409 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
6440332 TTTCATAAGT
6440342 AAGACAAGATGAGTACCTTCAAGTGTACTTTGC
1 AAGACAAGATGAGTACCTTCAAGTGTACTTTGC
6440375 AAGACAAGATGAGTACCTTCAAGTGTACTTTGC
1 AAGACAAGATGAGTACCTTCAAGTGTACTTTGC
6440408 AA
1 AA
6440410 CCAGTTGTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (33 bp):
AAGACAAGATGAGTACCTTCAAGTGTACTTTGC
Found at i:6443534 original size:9 final size:9
Alignment explanation
Indices: 6443522--6443555 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
6443512 ACTTCATGTT
*
6443522 AATTTTTTT
1 AATTTTTTA
6443531 AATTTTTATA
1 AATTTTT-TA
6443541 AATTTTTTA
1 AATTTTTTA
6443550 AATTTT
1 AATTTT
6443556 AAATTTGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
AATTTTTTA
Found at i:6448762 original size:3 final size:3
Alignment explanation
Indices: 6448744--6448798 Score: 67
Period size: 3 Copynumber: 18.3 Consensus size: 3
6448734 TGTTTAATTA
* * *
6448744 ATT ATT -TT AGT ATT ATT ATT ATT ATT AAT ATT ATT ATT ACT ATT AATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
6448792 ATT ATT A
1 ATT ATT A
6448799 GTTTTGTTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:6461475 original size:50 final size:50
Alignment explanation
Indices: 6461397--6461954 Score: 371
Period size: 50 Copynumber: 11.2 Consensus size: 50
6461387 TTTGCAATTA
* * * * * *
6461397 AAAAGATTAAAGCCACAACGACGAATCTTACTTCCCAAGTAGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACGCATTGCAGTGG
* * * ** * **
6461447 AACAGATTGAAGCTACAACGGTGAATCTTGC-TCCTTCGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACG-CATTGCAGTGG
* * * * * *
6461497 AAAAGATTGAGGCCACAACAGCGAATCTTACTTCCCAGGTAGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACGCATTGCAGTGG
* * * * **
6461547 AACAGATTGAAGCTACAACGGCGAATCTTGC-TCCCCCGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACG-CATTGCAGTGG
* * * ** * *
6461597 AAAAGATTGAGGCCACAACGGTGAATCTTACTTCTTAGGCAATGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACGCATTGCAGTGG
* * * * * *
6461647 AATAGATTGAAGCTACAACGACGAATCTTGCTACCC-CGACATTGCAACT-A
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACG-CATTGC-AGTGG
* * * * **
6461697 AAAAGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCGGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACGCATTGCAGTGG
* * * * **
6461747 AATAGATTGAAGCTATAACGGCGAATCTT-CTTCCCCCGACATTGCAATCA
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACG-CATTGCAGTGG
* * * ** *
6461797 AAAAGATTG-AGACCACAACGACAAATCTTACTTCCCTA-GCGGTACAGTGG
1 AAAAGATTGAAG-CTACAACGGCGAATCTTACTTCCC-ACGCATTGCAGTGG
* * * * *
6461847 AACAGATTGAAGCTACAACGGCGAATATTGCTTCCC-CGACATTGCGGT-T
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACG-CATTGCAGTGG
* * *
6461896 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCC-CGACATTGCAGTTG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACG-CATTGCAGTGG
*
6461946 AACAGATTG
1 AAAAGATTG
6461955 GAGATGACAG
Statistics
Matches: 374, Mismatches: 118, Indels: 32
0.71 0.23 0.06
Matches are distributed among these distances:
49 65 0.17
50 290 0.78
51 19 0.05
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (50 bp):
AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCACGCATTGCAGTGG
Found at i:6461561 original size:100 final size:99
Alignment explanation
Indices: 6461388--6461954 Score: 721
Period size: 100 Copynumber: 5.7 Consensus size: 99
6461378 AAACCATAGT
* * * *
6461388 TTGCAATTAAAAAGATTAAAGCCACAACGACGAATCTTACTTCCCAAGTAGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGA
* *
6461453 TTGAAGCTACAACGGTGAATCTTGCTCCTTCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTCC-CCGACA
*
6461488 TTGCAATTAAAAAGATTGAGGCCACAAC-AGCGAATCTTACTTCCCAGGTAGTGCAGTGGAACAG
1 TTGCAATTAAAAAGATTGAGGCCACAACGA-CGAATCTTACTTCCCAGGCAGTGCAGTGGAACAG
6461552 ATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTTGCT-CCCCGACA
** ** * *
6461588 TTGCAATTAAAAAGATTGAGGCCACAACGGTGAATCTTACTTCTTAGGCAATGCAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGA
*
6461653 TTGAAGCTACAACGACGAATCTTGCTACCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCT-CCCCGACA
* * *
6461688 TTGCAACTAAAAAGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCGGTGCAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGA
*
6461753 TTGAAGCTATAACGGCGAATCTT-CTTCCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGC-T-CCCCGACA
* * * * *
6461788 TTGCAATCAAAAAGATTGAGACCACAACGACAAATCTTACTTCCCTA-GCGGTACAGTGGAACAG
1 TTGCAATTAAAAAGATTGAGGCCACAACGACGAATCTTACTTCCC-AGGCAGTGCAGTGGAACAG
*
6461852 ATTGAAGCTACAACGGCGAATATTGCTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTTGC-TCCCCGACA
** * * * * * * *
6461888 TTGCGGTT-AATAGATTGAAGCTACAAC-AGCGAATCTTACTTCCCCGACATTGCAGTTGAACAG
1 TTGCAATTAAAAAGATTGAGGCCACAACGA-CGAATCTTACTTCCCAGGCAGTGCAGTGGAACAG
6461951 ATTG
65 ATTG
6461955 GAGATGACAG
Statistics
Matches: 413, Mismatches: 46, Indels: 17
0.87 0.10 0.04
Matches are distributed among these distances:
98 1 0.00
99 47 0.11
100 359 0.87
101 6 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (99 bp):
TTGCAATTAAAAAGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTCCCCGACA
Found at i:6463626 original size:3 final size:3
Alignment explanation
Indices: 6463608--6463662 Score: 67
Period size: 3 Copynumber: 18.3 Consensus size: 3
6463598 TGTTTAATTA
* * *
6463608 ATT ATT -TT AGT ATT ATT ATT ATT ATT AAT ATT ATT ATT ACT ATT AATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
6463656 ATT ATT A
1 ATT ATT A
6463663 GTTTTGTTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:6466622 original size:91 final size:91
Alignment explanation
Indices: 6466416--6466625 Score: 257
Period size: 91 Copynumber: 2.3 Consensus size: 91
6466406 CGGACACTCC
* **
6466416 AGTTTGAGGATAAACCACAAGTG-TTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAATT
1 AGTTTGTGGATAAACCACAAGTGTTTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAACG
*
6466480 GGTTTACAGATAAAAGCTGCTAGTAAA
66 GGTTTACAGATAAAAGCTACTAGT-AA
* * * * *
6466507 AG-TTGTGGATAAACCACGAA-TGTTTGTAGGTTAATACGTTGCCAATAGGTTGTGAATGCACAG
1 AGTTTGTGGATAAACCAC-AAGTGTTTGCAAGTTAATACGCTGCCAATA-GTTGTGAATACACAA
*
6466570 CGGGTTTGCAGATAAAAGCTACTAGT-A
64 CGGGTTTACAGATAAAAGCTACTAGTAA
* *
6466597 AGTTTGTGGATGAACCACTAGTGTTTGCA
1 AGTTTGTGGATAAACCACAAGTGTTTGCA
6466626 GATAAACTGC
Statistics
Matches: 101, Mismatches: 13, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
90 20 0.20
91 46 0.46
92 35 0.35
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (91 bp):
AGTTTGTGGATAAACCACAAGTGTTTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAACG
GGTTTACAGATAAAAGCTACTAGTAA
Found at i:6468253 original size:37 final size:37
Alignment explanation
Indices: 6468175--6468253 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
6468165 AAATAATAAT
** *
6468175 AAATAATATTCAAATAATTAAATATAATGATATTTGT
1 AAATAATATTCAAATAATTAAATATAATGATACATGA
* * *
6468212 AAATAATATTTAAATAGTTTAATATTAATGATACAT-A
1 AAATAATATTCAAATAATTAAATA-TAATGATACATGA
6468249 AAATA
1 AAATA
6468254 TAAATTAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
37 26 0.74
38 9 0.26
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (37 bp):
AAATAATATTCAAATAATTAAATATAATGATACATGA
Found at i:6471648 original size:18 final size:18
Alignment explanation
Indices: 6471627--6471681 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
6471617 TTCAAAATAA
*
6471627 TATAAATTTTTTAATTTT
1 TATAAATTTTTTGATTTT
*
6471645 TATAAATATTTTGATTTT
1 TATAAATTTTTTGATTTT
6471663 TGA-AAATTATTTTGATTTT
1 T-ATAAATT-TTTTGATTTT
6471682 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATAAATTTTTTGATTTT
Found at i:6471663 original size:19 final size:19
Alignment explanation
Indices: 6471627--6471681 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
6471617 TTCAAAATAA
* *
6471627 TATAAAT-TTTTTAATTTT
1 TATAAATATTTTGATTTTT
6471645 TATAAATATTTTGATTTTT
1 TATAAATATTTTGATTTTT
*
6471664 GA-AAATTATTTTGATTTT
1 TATAAA-TATTTTGATTTT
6471682 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.31
19 22 0.69
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
TATAAATATTTTGATTTTT
Found at i:6471948 original size:50 final size:50
Alignment explanation
Indices: 6471873--6472264 Score: 245
Period size: 50 Copynumber: 7.9 Consensus size: 50
6471863 GCAGTGGAAC
* * *
6471873 AGATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCAATGAAAA
* * * *** * * * * *
6471923 AGATTGAGGCCACAACGGTGAATCTTACTTCTTAGGCAATGCAGTGGAAT
1 AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCAATGAAAA
* * * *
6471973 AGATTGAAGCTACAACGACGAATCTTGCTACCCCGACATTGCAACT-AAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCAA-TGAAAA
* * * * * ** * * *
6472023 AGATTGAGGCCACAACGACGAATCTTACTTCCCAGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCAATGAAAA
* * *
6472073 AGATTGAAGCTATAACGGCGAATCTT-CTTCCCCCGACATTGCAATCAAAA
1 AGATTGAAGCCACAACGGCGAATCTTAC-TCCCCCGACATTGCAATGAAAA
* * * * ** * * * *
6472123 AGATTG-AGACCACAACGACAAATCTTACT-TCCCTAGCGGTACAGTGGAAC
1 AGATTGAAG-CCACAACGGCGAATCTTACTCCCCCGA-CATTGCAATGAAAA
* * * * ** * *
6472173 AGATTGAAGCTACAACGGCGAATATTGCTTCCCCGACATTGCGGT-TAAT
1 AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCAATGAAAA
* * *
6472222 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCA
1 AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCA
6472265 GTTGAACAGA
Statistics
Matches: 252, Mismatches: 82, Indels: 17
0.72 0.23 0.05
Matches are distributed among these distances:
49 49 0.19
50 195 0.77
51 8 0.03
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGAATCTTACTCCCCCGACATTGCAATGAAAA
Found at i:6472035 original size:100 final size:99
Alignment explanation
Indices: 6471861--6472253 Score: 513
Period size: 100 Copynumber: 3.9 Consensus size: 99
6471851 TCGAAATGTA
6471861 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACATTGCAATTAAAAAGA
1 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACATTGCAA-TAAAAAGA
** * *
6471926 TTGAGGCCACAACGGTGAATCTTACTTCTTAGGCA
65 TTGAGGCCACAACGACGAATCTTACTTCCTAGGCG
* * * *
6471961 ATGCAGTGGAATAGATTGAAGCTACAACGACGAATCTTGCTACCCCGACATTGCAACTAAAAAGA
1 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACATTGCAA-TAAAAAGA
*
6472026 TTGAGGCCACAACGACGAATCTTACTTCCCAGGCG
65 TTGAGGCCACAACGACGAATCTTACTTCCTAGGCG
* *
6472061 GTGCAGTGGAATAGATTGAAGCTATAACGGCGAATCTT-CTTCCCCCGACATTGCAATCAAAAAG
1 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGC-TCCCCCGACATTGCAAT-AAAAAG
* *
6472125 ATTGAGACCACAACGACAAATCTTACTTCCCTA-GCG
64 ATTGAGGCCACAACGACGAATCTTACTT-CCTAGGCG
* * * ** * *
6472161 GTACAGTGGAACAGATTGAAGCTACAACGGCGAATATTGCTTCCCCGACATTGCGGTTAATAGAT
1 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACATTGCAATAAAAAGAT
* *
6472226 TGAAGCTACAAC-AGCGAATCTTACTTCC
66 TGAGGCCACAACGA-CGAATCTTACTTCC
6472254 CCGACATTGC
Statistics
Matches: 258, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
98 3 0.01
99 28 0.11
100 223 0.86
101 4 0.02
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (99 bp):
GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTCCCCCGACATTGCAATAAAAAGAT
TGAGGCCACAACGACGAATCTTACTTCCTAGGCG
Found at i:6477082 original size:91 final size:91
Alignment explanation
Indices: 6476876--6477085 Score: 257
Period size: 91 Copynumber: 2.3 Consensus size: 91
6476866 CGGACACTCC
* **
6476876 AGTTTGAGGATAAACCACAAGTG-TTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAATT
1 AGTTTGTGGATAAACCACAAGTGTTTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAACG
*
6476940 GGTTTACAGATAAAAGCTGCTAGTAAA
66 GGTTTACAGATAAAAGCTACTAGT-AA
* * * * *
6476967 AG-TTGTGGATAAACCACGAA-TGTTTGTAGGTTAATACGTTGCCAATAGGTTGTGAATGCACAG
1 AGTTTGTGGATAAACCAC-AAGTGTTTGCAAGTTAATACGCTGCCAATA-GTTGTGAATACACAA
*
6477030 CGGGTTTGCAGATAAAAGCTACTAGT-A
64 CGGGTTTACAGATAAAAGCTACTAGTAA
* *
6477057 AGTTTGTGGATGAACCACTAGTGTTTGCA
1 AGTTTGTGGATAAACCACAAGTGTTTGCA
6477086 GATAAACTGC
Statistics
Matches: 101, Mismatches: 13, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
90 20 0.20
91 46 0.46
92 35 0.35
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (91 bp):
AGTTTGTGGATAAACCACAAGTGTTTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAACG
GGTTTACAGATAAAAGCTACTAGTAA
Found at i:6478713 original size:37 final size:37
Alignment explanation
Indices: 6478635--6478713 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
6478625 AAATAATAAT
** *
6478635 AAATAATATTCAAATAATTAAATATAATGATATTTGT
1 AAATAATATTCAAATAATTAAATATAATGATACATGA
* * *
6478672 AAATAATATTTAAATAGTTTAATATTAATGATACAT-A
1 AAATAATATTCAAATAATTAAATA-TAATGATACATGA
6478709 AAATA
1 AAATA
6478714 TAAATTAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
37 26 0.74
38 9 0.26
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (37 bp):
AAATAATATTCAAATAATTAAATATAATGATACATGA
Found at i:6482108 original size:18 final size:18
Alignment explanation
Indices: 6482087--6482141 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
6482077 TTCAAAATAA
*
6482087 TATAAATTTTTTAATTTT
1 TATAAATTTTTTGATTTT
*
6482105 TATAAATATTTTGATTTT
1 TATAAATTTTTTGATTTT
6482123 TGA-AAATTATTTTGATTTT
1 T-ATAAATT-TTTTGATTTT
6482142 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATAAATTTTTTGATTTT
Found at i:6482123 original size:19 final size:19
Alignment explanation
Indices: 6482087--6482141 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
6482077 TTCAAAATAA
* *
6482087 TATAAAT-TTTTTAATTTT
1 TATAAATATTTTGATTTTT
6482105 TATAAATATTTTGATTTTT
1 TATAAATATTTTGATTTTT
*
6482124 GA-AAATTATTTTGATTTT
1 TATAAA-TATTTTGATTTT
6482142 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.31
19 22 0.69
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
TATAAATATTTTGATTTTT
Found at i:6482638 original size:29 final size:30
Alignment explanation
Indices: 6482582--6482638 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
6482572 TGATATATCA
*
6482582 TTGAGAGTTTAAGAATGTAATTATAATATT
1 TTGAGAGTTTAAGAATGTAATTAAAATATT
*
6482612 TTGA-AGTTTAATAA-GTAATTTAAAATA
1 TTGAGAGTTTAAGAATGTAA-TTAAAATA
6482639 ATTATCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 16 0.67
30 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (30 bp):
TTGAGAGTTTAAGAATGTAATTAAAATATT
Found at i:6483964 original size:2 final size:2
Alignment explanation
Indices: 6483957--6483989 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6483947 AATTAAGAAA
*
6483957 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6483990 AATCTGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6484628 original size:4 final size:4
Alignment explanation
Indices: 6484619--6484645 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6484609 TTTTAAGTTC
6484619 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
6484646 ATTTGGTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:6487859 original size:14 final size:14
Alignment explanation
Indices: 6487840--6487869 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6487830 TGTCCATGCC
*
6487840 TTTTTTTTTTCTCT
1 TTTTTTTTTTCACT
6487854 TTTTTTTTTTCACT
1 TTTTTTTTTTCACT
6487868 TT
1 TT
6487870 AAAACTATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTCACT
Found at i:6490994 original size:22 final size:20
Alignment explanation
Indices: 6490967--6491009 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
6490957 CCGGTCCAAT
6490967 TTTTAATAAACACAAAAAAATA
1 TTTTAA-AAACA-AAAAAAATA
*
6490989 TTTTAAAAATAAAAAAAATA
1 TTTTAAAAACAAAAAAAATA
6491009 T
1 T
6491010 ATTTTTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 4 0.20
22 6 0.30
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
TTTTAAAAACAAAAAAAATA
Found at i:6506223 original size:43 final size:43
Alignment explanation
Indices: 6506175--6506348 Score: 348
Period size: 43 Copynumber: 4.0 Consensus size: 43
6506165 TGGTTCTATG
6506175 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
1 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
6506218 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
1 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
6506261 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
1 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
6506304 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
1 TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
6506347 TA
1 TA
6506349 CATATCGCCT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 131 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.51
Consensus pattern (43 bp):
TATGCCTTTGTTCATTCCATTTTTAGTTTCATCCTTAAATACT
Found at i:6513051 original size:5 final size:5
Alignment explanation
Indices: 6513041--6513072 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
6513031 TGAGCATTCG
6513041 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
6513073 AAAAAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:6514010 original size:9 final size:9
Alignment explanation
Indices: 6513996--6514032 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
6513986 TATAGTTTGA
6513996 TATTCGAAT
1 TATTCGAAT
6514005 TATTCGAAT
1 TATTCGAAT
*
6514014 TATTCGAGT
1 TATTCGAAT
6514023 TATTCGAAT
1 TATTCGAAT
6514032 T
1 T
6514033 CGAAAATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:6514102 original size:9 final size:9
Alignment explanation
Indices: 6514085--6514115 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
6514075 TCGAGTTGAT
6514085 TCGAATAAC
1 TCGAATAAC
*
6514094 TCGATTAAC
1 TCGAATAAC
6514103 TCGAATAAC
1 TCGAATAAC
6514112 TCGA
1 TCGA
6514116 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:6515301 original size:9 final size:9
Alignment explanation
Indices: 6515287--6515347 Score: 77
Period size: 9 Copynumber: 6.6 Consensus size: 9
6515277 TGTAGTGATT
*
6515287 TAATTCTGG
1 TAATTCGGG
6515296 TAATTCGGG
1 TAATTCGGG
*
6515305 TAATTTGGG
1 TAATTCGGG
*
6515314 TAATTTTCGGA
1 TAA--TTCGGG
6515325 TAATTCGGG
1 TAATTCGGG
6515334 TAATTCGGG
1 TAATTCGGG
6515343 TAATT
1 TAATT
6515348 TTTAACCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
9 38 0.84
11 7 0.16
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (9 bp):
TAATTCGGG
Found at i:6515328 original size:20 final size:20
Alignment explanation
Indices: 6515287--6515338 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
6515277 TGTAGTGATT
* *
6515287 TAATTCTGGTAA--TTCGGG
1 TAATTCGGGTAATTTTCGGA
*
6515305 TAATTTGGGTAATTTTCGGA
1 TAATTCGGGTAATTTTCGGA
6515325 TAATTCGGGTAATT
1 TAATTCGGGTAATT
6515339 CGGGTAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 10 0.36
20 18 0.64
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (20 bp):
TAATTCGGGTAATTTTCGGA
Found at i:6516603 original size:3 final size:3
Alignment explanation
Indices: 6516585--6516759 Score: 83
Period size: 3 Copynumber: 57.3 Consensus size: 3
6516575 TGGTTTCGAC
* *
6516585 AAT AAT AA- AAT GAT AAT AAT AAAT AAT AATT CATT AAT AA- ACA- AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA-T -AAT AAT AAT A-AT AAT
* * * **
6516631 AAT AA- AAGT AAAT AAAT AAAT AAG AGT AAT AAT AGT AAT AAT AAT GGT
1 AAT AAT AA-T -AAT -AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
6516679 AGT AAA AAT AA- AAT AAA AAGT AAT AGT AAT AGT AAT AAC AGT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
* *
6516724 AAT AGT AAC AA- AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
6516760 GGAATAAAGT
Statistics
Matches: 131, Mismatches: 29, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
2 10 0.08
3 102 0.78
4 16 0.12
5 3 0.02
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:6518582 original size:129 final size:127
Alignment explanation
Indices: 6518358--6518612 Score: 314
Period size: 129 Copynumber: 2.0 Consensus size: 127
6518348 GAAATAAAGT
* * *** * *
6518358 CTGATTCGATCTGTTCTACTGCAACTTCAGAGATAAGATCCATCATTTTAATTTGCTCCGCTGTA
1 CTGATGCGATCTGCTCTACTGCAACTTCAGAGATAAGATCCATCATTTTAATCCACTCCACTGCA
* * * ** *
6518423 ACTTCAGGGAGATACAATTGGTTTATTCAATCTGTTCCACTGTAACTTCAGGGAGATAAGAC
66 ACTTCAGGGAGATACAATTAGTTTACTCAATCTGCTCCACTACAACTTCAAGGAGATAAGAC
* *
6518485 CTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGATCCATCATTTTAATCCACTCTACTG
1 CTGATGCGATCTGCTCTACTGCAACTTC--AGAGATAAGATCCATCATTTTAATCCACTCCACTG
* * *
6518550 CAACTTCAGGGAGATA-AGATTAGTTTCCTCAATTTGCTCCACTACAACTTTAAGGAGATAAGA
64 CAACTTCAGGGAGATACA-ATTAGTTTACTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
6518613 TTGGTTTATT
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
127 26 0.24
128 1 0.01
129 80 0.75
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (127 bp):
CTGATGCGATCTGCTCTACTGCAACTTCAGAGATAAGATCCATCATTTTAATCCACTCCACTGCA
ACTTCAGGGAGATACAATTAGTTTACTCAATCTGCTCCACTACAACTTCAAGGAGATAAGAC
Found at i:6518598 original size:44 final size:41
Alignment explanation
Indices: 6518403--6518786 Score: 242
Period size: 44 Copynumber: 9.0 Consensus size: 41
6518393 AGATCCATCA
* * *
6518403 TTTT-AATTTGCTCCGCTGTAACTTCAGGGAGATACA-ATTGG
1 TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATA-AGATT-G
* * *
6518444 TTTATTCAATCTGTTCCACTGTAACTTCAGGGAGATAAGACCTG
1 -TT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG
* * * * * * *
6518488 -ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGATCCATCA
1 TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT---T-G
** *
6518532 TTTT-AATCCACTCTACTGCAACTTCAGGGAGATAAGATTAG
1 TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G
* * * *
6518573 TTTCCTCAATTTGCTCCACTACAACTTTAAGGAGATAAGATTGG
1 TTT--TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G
*
6518617 TTTATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
1 -TT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG
* * * * *
6518661 -ATGCGATATGCT-CTCTGCAACTTCAGGGAGATAAGATCTG
1 TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG
* * *
6518701 TGATTTTAATCTGCTCCACAGCAACTTCAGGGAGATAGGATTATTTG
1 T--TTTCAATCTGCTCCACTGCAACTTCAGGGAGATA--A-GA-TTG
*
6518748 TTTT-AATCTGGTCCACTGCAACTTCAGGGAGATAAGATT
1 TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
6518787 CGCCATCTTC
Statistics
Matches: 265, Mismatches: 53, Indels: 50
0.72 0.14 0.14
Matches are distributed among these distances:
39 1 0.00
40 27 0.10
41 41 0.15
42 3 0.01
43 12 0.05
44 165 0.62
45 9 0.03
46 2 0.01
47 4 0.02
48 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (41 bp):
TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG
Found at i:6518665 original size:173 final size:172
Alignment explanation
Indices: 6518407--6518743 Score: 469
Period size: 173 Copynumber: 2.0 Consensus size: 172
6518397 CCATCATTTT
* ** * * *
6518407 AATTTGCTCCGCTGTAACTTCAGGGAGATACAATTGGTTTATTCAATCTGTTCCACTGTAACTTC
1 AATTTGCTCCACTACAACTTCAAGGAGATACAATTGGTTTATTCAATCTGCTCCACTGCAACTTC
* *
6518472 AGGGAGATAAGACCTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGATCCATCATTTTA
66 AGGGAGATAAGACCTGATGCGATATGCTCT-CTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* *
6518537 ATCCACTCTACTGCAACTTCAGGGAGATAAGATTAGTTTCCTC
130 ATCCACTCCACAGCAACTTCAGGGAGATAAGATTAGTTTCCTC
* *
6518580 AATTTGCTCCACTACAACTTTAAGGAGATA-AGATTGGTTTATTCAGTCTGCTCCACTGCAACTT
1 AATTTGCTCCACTACAACTTCAAGGAGATACA-ATTGGTTTATTCAATCTGCTCCACTGCAACTT
* * ** *
6518644 CAGGGAGATAAGACTTGATGCGATATGCTCTCTGCAACTTCAGGGAGATAAGATCTGTGATTTTA
65 CAGGGAGATAAGACCTGATGCGATATGCTCTCTGCAACTTCAGAGAGATAAGATCCATCATTTTA
** *
6518709 ATCTGCTCCACAGCAACTTCAGGGAGATAGGATTA
130 ATCCACTCCACAGCAACTTCAGGGAGATAAGATTA
6518744 TTTGTTTTAA
Statistics
Matches: 143, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
172 60 0.42
173 83 0.58
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (172 bp):
AATTTGCTCCACTACAACTTCAAGGAGATACAATTGGTTTATTCAATCTGCTCCACTGCAACTTC
AGGGAGATAAGACCTGATGCGATATGCTCTCTGCAACTTCAGAGAGATAAGATCCATCATTTTAA
TCCACTCCACAGCAACTTCAGGGAGATAAGATTAGTTTCCTC
Found at i:6518715 original size:84 final size:84
Alignment explanation
Indices: 6518422--6518737 Score: 282
Period size: 85 Copynumber: 3.7 Consensus size: 84
6518412 GCTCCGCTGT
* * * *
6518422 AACTTCAGGGAGATACA-ATTGGTTTATTCAATCTGTTCCACTGTAACTTCAGGGAGATAAGACC
1 AACTTCAGGGAGATA-AGATTGGATTATTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT
*
6518486 TGATGCGATCTGCTCTACTGC
65 TGATGCGATATGCTCT-CTGC
* * ** * * ** *
6518507 AACTTCAGAGAGATAGGA-TCCATCATTTTAATCCACTCTACTGCAACTTCAGGGAGATAAGA-T
1 AACTTCAGGGAGATAAGATTGGATTA-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT
* * * * * *
6518570 TAGTTTCCTCAATTTGCTCCACTAC
65 T-G-AT--GCGATATGCT-CTCTGC
* * * *
6518595 AACTTTAAGGAGATAAGATTGGTTTATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
1 AACTTCAGGGAGATAAGATTGGATTATTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
6518660 GATGCGATATGCTCTCTGC
66 GATGCGATATGCTCTCTGC
*
6518679 AACTTCAGGGAGATAAGATCTGTGATT-TT-AATCTGCTCCACAGCAACTTCAGGGAGATA
1 AACTTCAGGGAGATAAGAT-TG-GATTATTCAATCTGCTCCACTGCAACTTCAGGGAGATA
6518738 GGATTATTTG
Statistics
Matches: 177, Mismatches: 43, Indels: 23
0.73 0.18 0.09
Matches are distributed among these distances:
84 53 0.30
85 57 0.32
86 4 0.02
87 1 0.01
88 56 0.32
89 6 0.03
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (84 bp):
AACTTCAGGGAGATAAGATTGGATTATTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
GATGCGATATGCTCTCTGC
Found at i:6518716 original size:128 final size:128
Alignment explanation
Indices: 6518542--6518784 Score: 307
Period size: 128 Copynumber: 1.9 Consensus size: 128
6518532 TTTTAATCCA
* *
6518542 CTCTACTGCAACTTCAGGGAGATAAGATTAGTTTCCTCAATTTGCTCCACTA-CAACTTTAAGGA
1 CTCTACTGCAACTTCAGGGAGATAAGATTAGTTT-CTCAATCTGCTCCAC-AGCAACTTCAAGGA
* *
6518606 GATAAGATTGGTTT-ATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATAT
64 GATAAGATT-ATTTGATTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATAT
6518670 G
128 G
* *
6518671 CTCT-CTGCAACTTCAGGGAGATAAGATCT-GTGATT-TTAATCTGCTCCACAGCAACTTCAGGG
1 CTCTACTGCAACTTCAGGGAGATAAGAT-TAGT--TTCTCAATCTGCTCCACAGCAACTTCAAGG
* * * *
6518733 AGATAGGATTATTTGTTTTAATCTGGTCCACTGCAACTTCAGGGAGATAAGA
63 AGATAAGATTATTTGATTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
6518785 TTCGCCATCT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
127 4 0.04
128 88 0.89
129 5 0.05
130 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (128 bp):
CTCTACTGCAACTTCAGGGAGATAAGATTAGTTTCTCAATCTGCTCCACAGCAACTTCAAGGAGA
TAAGATTATTTGATTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATATG
Found at i:6518784 original size:172 final size:173
Alignment explanation
Indices: 6518403--6518786 Score: 504
Period size: 172 Copynumber: 2.2 Consensus size: 173
6518393 AGATCCATCA
* * * *
6518403 TTTTAATTTGCTCCGCTGTAACTTCAGGGAGATACA-ATTGGTTTATTCAATCTGTTCCACTGTA
1 TTTTAATTTGCTCCACTGCAACTTCAGGGAGATA-AGATTGGTTTATTCAATCTGCTCCACTGCA
* *
6518467 ACTTCAGGGAGATAAGACCTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGATCCATCA
65 ACTTCAGGGAGATAAGACCTGATGCGATATGCTCTACTGCAACTTCAGAGAGATAAGATCCATCA
* *
6518532 TTTTAATCCACTCTACTGCAACTTCAGGGAGATAAGATTAGTTT
130 TTTTAATCCACTCCACAGCAACTTCAGGGAGATAAGATTAGTTT
** * * * * *
6518576 CCTCAATTTGCTCCACTACAACTTTAAGGAGATAAGATTGGTTTATTCAGTCTGCTCCACTGCAA
1 TTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTCAATCTGCTCCACTGCAA
* * ** *
6518641 CTTCAGGGAGATAAGACTTGATGCGATATGCTCT-CTGCAACTTCAGGGAGATAAGATCTGTGAT
66 CTTCAGGGAGATAAGACCTGATGCGATATGCTCTACTGCAACTTCAGAGAGATAAGATCCATCAT
** *
6518705 TTTAATCTGCTCCACAGCAACTTCAGGGAGATAGGATTA-TTT
131 TTTAATCCACTCCACAGCAACTTCAGGGAGATAAGATTAGTTT
* *
6518747 GTTTTAATCTGGTCCACTGCAACTTCAGGGAGATAAGATT
1 -TTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATT
6518787 CGCCATCTTC
Statistics
Matches: 178, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
171 3 0.02
172 91 0.51
173 84 0.47
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (173 bp):
TTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTCAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGACCTGATGCGATATGCTCTACTGCAACTTCAGAGAGATAAGATCCATCAT
TTTAATCCACTCCACAGCAACTTCAGGGAGATAAGATTAGTTT
Found at i:6519043 original size:210 final size:210
Alignment explanation
Indices: 6518803--6519324 Score: 818
Period size: 210 Copynumber: 2.5 Consensus size: 210
6518793 CTTCAGTCTG
* * *
6518803 CGCCAGGGAGATAAGATTCACTGCCTTCAGCTTTAATCTGCTTCGCTGCAACGTCAGGGAAACAA
1 CGCCAGAGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGTCAGGGAAACAA
*
6518868 GATTCGTTAACTTTAGCTTTAATCTGTTCCATTGTAACACTTAAGAGATAAGATCTGCTGCCTTC
66 GATTCGTTAACTTTAGCTTTAATCTGTTCCATTGTAACACCTAAGAGATAAGATCTGCTGCCTTC
* *
6518933 AGCTTTAATCCGCTCCACTTTAGCTTTAATCTATT-CTATTGTAACGCTAGGGAAAAAAGATTTG
131 AGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTAC-ATTGCAACGCTAGGGAAAAAAGATTTG
6518997 CTGCCTTCAGTCTTAA
195 CTGCCTTCAGTCTTAA
* *
6519013 TGCCAGAGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCCGCAACGTCAGGGAAACAA
1 CGCCAGAGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGTCAGGGAAACAA
* *
6519078 GATTCGTTAACTTTAGCTTTAATCTGTTCCATTGTAACGCCTAAGAGATAAGATTTGCTGCCTTC
66 GATTCGTTAACTTTAGCTTTAATCTGTTCCATTGTAACACCTAAGAGATAAGATCTGCTGCCTTC
* *
6519143 AGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTACATTGCAATGCTAGGGAAATAAGATTTGC
131 AGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTACATTGCAACGCTAGGGAAAAAAGATTTGC
*
6519208 TGCCTTTAGTCTTAA
196 TGCCTTCAGTCTTAA
* *
6519223 CGCCAGAGTGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACG-CTAGGGAAACA
1 CGCCAGAGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGTC-AGGGAAACA
* * *
6519287 AGATTTGGTT--CTTTTAGCTTTAATCTGTTTCGTTGTAA
65 AGA-TTCGTTAAC-TTTAGCTTTAATCTGTTCCATTGTAA
6519325 GGCCAAGGAG
Statistics
Matches: 288, Mismatches: 20, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
209 2 0.01
210 280 0.97
211 6 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (210 bp):
CGCCAGAGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGTCAGGGAAACAA
GATTCGTTAACTTTAGCTTTAATCTGTTCCATTGTAACACCTAAGAGATAAGATCTGCTGCCTTC
AGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTACATTGCAACGCTAGGGAAAAAAGATTTGC
TGCCTTCAGTCTTAA
Found at i:6519145 original size:102 final size:102
Alignment explanation
Indices: 6518810--6519158 Score: 268
Period size: 102 Copynumber: 3.4 Consensus size: 102
6518800 CTGCGCCAGG
* * * *
6518810 GAGATAAGATTCACTGCCTTCAGCTTTAATCTGCTTCGCTGCAACGTCAGGGAAACAAGATTCGT
1 GAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCGCAGCAACGTCAGGGAAACAAGATTCGT
* *
6518875 TAACTTTAGCTTTAATCTGTTCCATTGTAACACTTAA
66 TAACTTTAGCTTTAATCTGTTCCATTGTAACGCCTAA
* * ** *
6518912 GAGATAAGA-TCTGCTGCCTTCAGCTTTAATCCGCTCCACTTTAGCTTTAATCTATTCTATTGTA
1 GAGATAAGATTC-GCTGCCTTCAGCTTTAATCCGCTCCGC---AGC---AA-C--GTC-AGGGAA
* * ** *** * * *
6518976 AC--G-CTAGGGAA-AAAAGATTT--GCTGCCTT-CAGTCT-TAATGCC-AGA
55 ACAAGATTCGTTAACTTTAGCTTTAATCTG--TTCCA-T-TGTAACGCCTA-A
* *
6519020 GAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCCGCAACGTCAGGGAAACAAGATTCGT
1 GAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCGCAGCAACGTCAGGGAAACAAGATTCGT
6519085 TAACTTTAGCTTTAATCTGTTCCATTGTAACGCCTAA
66 TAACTTTAGCTTTAATCTGTTCCATTGTAACGCCTAA
*
6519122 GAGATAAGATTTGCTGCCTTCAGCTTTAATCCGCTCC
1 GAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCC
6519159 ACTTCAGCTT
Statistics
Matches: 181, Mismatches: 40, Indels: 52
0.66 0.15 0.19
Matches are distributed among these distances:
98 5 0.03
99 2 0.01
100 1 0.01
101 8 0.04
102 84 0.46
103 3 0.02
104 3 0.02
105 4 0.02
106 3 0.02
107 3 0.02
108 49 0.27
109 8 0.04
110 1 0.01
111 2 0.01
112 5 0.03
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (102 bp):
GAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCGCAGCAACGTCAGGGAAACAAGATTCGT
TAACTTTAGCTTTAATCTGTTCCATTGTAACGCCTAA
Found at i:6525574 original size:3 final size:3
Alignment explanation
Indices: 6525566--6525599 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
6525556 GAAAGTATGA
6525566 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
6525600 GCAAATGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6525679 original size:3 final size:3
Alignment explanation
Indices: 6525673--6525721 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
6525663 TAAAGTATGA
*
6525673 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6525721 A
1 A
6525722 GGAATAAAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6528204 original size:20 final size:19
Alignment explanation
Indices: 6528156--6528205 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
6528146 ATATCTAATA
*
6528156 ATTTATTATTTATTTATGT
1 ATTTTTTATTTATTTATGT
*
6528175 ATTTTCTATTTATTTTAT-T
1 ATTTTTTATTTA-TTTATGT
6528194 CATTTTTTATTT
1 -ATTTTTTATTT
6528206 TAATTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (19 bp):
ATTTTTTATTTATTTATGT
Found at i:6534994 original size:10 final size:10
Alignment explanation
Indices: 6534979--6535003 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6534969 CACTTTAACC
6534979 TAAAATTAAA
1 TAAAATTAAA
6534989 TAAAATTAAA
1 TAAAATTAAA
6534999 TAAAA
1 TAAAA
6535004 AATAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAATTAAA
Found at i:6536583 original size:25 final size:25
Alignment explanation
Indices: 6536535--6536583 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
6536525 CATAATTGAA
* * *
6536535 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
6536560 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
6536584 ATGTGTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:6536593 original size:17 final size:17
Alignment explanation
Indices: 6536556--6536598 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
6536546 TGATTTTGTA
6536556 TATTATGAAATATATTG
1 TATTATGAAATATATTG
6536573 -ATTATG-AATATATGTG
1 TATTATGAAATATAT-TG
*
6536589 TATTAAGAAA
1 TATTATGAAA
6536599 AAATGTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 7 0.32
16 8 0.36
17 5 0.23
18 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (17 bp):
TATTATGAAATATATTG
Found at i:6537028 original size:43 final size:43
Alignment explanation
Indices: 6536980--6537065 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
6536970 TATGTGATTG
6536980 ATATTGAAATGGA-AAATATGAGAAATGAA-TATGAGATGAGAAA
1 ATATTGAAAT-GACAAATATGAGAAAT-AATTATGAGATGAGAAA
* *
6537023 ATATTGAAATGACAAATATGATAAATAATTATGATATGAGAAA
1 ATATTGAAATGACAAATATGAGAAATAATTATGAGATGAGAAA
6537066 TGAGATATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 4 0.10
43 35 0.90
ACGTcount: A:0.53, C:0.01, G:0.19, T:0.27
Consensus pattern (43 bp):
ATATTGAAATGACAAATATGAGAAATAATTATGAGATGAGAAA
Found at i:6537648 original size:13 final size:13
Alignment explanation
Indices: 6537630--6537656 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6537620 TAAAGTTTGG
6537630 TAGCTTAGCATAA
1 TAGCTTAGCATAA
6537643 TAGCTTAGCATAA
1 TAGCTTAGCATAA
6537656 T
1 T
6537657 GATTGGTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TAGCTTAGCATAA
Found at i:6541045 original size:21 final size:20
Alignment explanation
Indices: 6541020--6541060 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
6541010 ATCATATATT
*
6541020 AATATTTAATTATTATTAAAA
1 AATATTTAATTAATA-TAAAA
*
6541041 AATATTTTATTAATATAAAA
1 AATATTTAATTAATATAAAA
6541061 TATAAGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATTTAATTAATATAAAA
Found at i:6541052 original size:18 final size:18
Alignment explanation
Indices: 6541029--6541063 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6541019 TAATATTTAA
*
6541029 TTATTATTAAAAAATATT
1 TTATTAATAAAAAATATT
*
6541047 TTATTAATATAAAATAT
1 TTATTAATAAAAAATAT
6541064 AAGTTTATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTATTAATAAAAAATATT
Found at i:6543864 original size:7 final size:7
Alignment explanation
Indices: 6543852--6543878 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6543842 TTGATATTAG
6543852 GTGTAAC
1 GTGTAAC
6543859 GTGTAAC
1 GTGTAAC
6543866 GTGTAAC
1 GTGTAAC
6543873 GTGTAA
1 GTGTAA
6543879 GTGCTTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (7 bp):
GTGTAAC
Found at i:6549625 original size:7 final size:7
Alignment explanation
Indices: 6549613--6549637 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6549603 CCACTTCCTT
6549613 CAACCTC
1 CAACCTC
6549620 CAACCTC
1 CAACCTC
6549627 CAACCTC
1 CAACCTC
6549634 CAAC
1 CAAC
6549638 TTGTTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.56, G:0.00, T:0.12
Consensus pattern (7 bp):
CAACCTC
Found at i:6554171 original size:143 final size:144
Alignment explanation
Indices: 6554006--6554293 Score: 569
Period size: 143 Copynumber: 2.0 Consensus size: 144
6553996 AAACTTTTAC
6554006 ATAAACTATCGTCCACTCTTTTTTTTCGAGTTTACTTCATTTTTAGTTTTAAATTTTAAAAGTTA
1 ATAAACTATCGTCCACTCTTTTTTTTCGAGTTTACTTCATTTTTAGTTTTAAATTTTAAAAGTTA
6554071 TGTGACAATAATTTACTTTTCATTAAATTTTTTATTTTAAATTATGTCACATAAGATTTTACATG
66 TGTGACAATAATTTACTTTTCATTAAATTTTTTATTTTAAATTATGTCACATAAGATTTTACATG
6554136 TCA-TTAATGGTTA
131 TCATTTAATGGTTA
6554149 ATAAACTATCGTCCACTCTTTTTTTTCGAGTTTACTTCATTTTTAGTTTTAAATTTTAAAAGTTA
1 ATAAACTATCGTCCACTCTTTTTTTTCGAGTTTACTTCATTTTTAGTTTTAAATTTTAAAAGTTA
6554214 TGTGACAATAATTTACTTTTCATTAAATTTTTTATTTTAAATTATGTCACATAAGATTTTACATG
66 TGTGACAATAATTTACTTTTCATTAAATTTTTTATTTTAAATTATGTCACATAAGATTTTACATG
6554279 TCATTTAATGGTTA
131 TCATTTAATGGTTA
6554293 A
1 A
6554294 ATTAATGGTT
Statistics
Matches: 144, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
143 133 0.92
144 11 0.08
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (144 bp):
ATAAACTATCGTCCACTCTTTTTTTTCGAGTTTACTTCATTTTTAGTTTTAAATTTTAAAAGTTA
TGTGACAATAATTTACTTTTCATTAAATTTTTTATTTTAAATTATGTCACATAAGATTTTACATG
TCATTTAATGGTTA
Found at i:6562626 original size:43 final size:43
Alignment explanation
Indices: 6562538--6563165 Score: 686
Period size: 43 Copynumber: 14.5 Consensus size: 43
6562528 GAAATTTATA
* * *
6562538 TTTAAGTTAAGGG-TTAGTGTTTTTAAGTTAAGAGATAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* *
6562580 TTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
*
6562624 TTAAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
* *
6562667 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
* * * *
6562711 TTAAAGTTAAGGG-TTAAGGTTTTTAAGTTAAGAGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG-GGTTAGGGTT
* *
6562754 TTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
* * * * *
6562798 TTAAAGTCAA-GGATTAGGGTTTTTAAGTTAAGGGTTATGATT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
*
6562840 TTTAAGTTAAGGGTTTAGTGTTTTTAA-TTCAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTT-AAGGGTTAGGGTT
* *
6562883 TTAAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * **** *
6562925 TTTTATTTAAGGG-TTA-GGTTTAGGGGTT-AGGGTTAGGGCT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * * *
6562965 TTTAAGTTAAGGGTTTAAGGTTTTAAAGTCAAGAGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* *
6563008 TTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
* * *
6563052 TTTAGGTTAAGGGTTTATGG-TTTTAAGTCAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
*
6563095 TTTAA-TTCAAGGG-TTAGAGTTTTTAAGTTAAGGGTTAGGGTTAGGATT
1 TTTAAGTT-AAGGGTTTAGGGTTTTTAAGTTAAGGGTTA--G---GG-TT
6563143 TTTAAGTTAAGGGTTTAGGGTTT
1 TTTAAGTTAAGGGTTTAGGGTTT
6563166 GTCAATTAAA
Statistics
Matches: 493, Mismatches: 70, Indels: 39
0.82 0.12 0.06
Matches are distributed among these distances:
40 21 0.04
41 11 0.02
42 83 0.17
43 238 0.48
44 116 0.24
47 2 0.00
48 12 0.02
49 10 0.02
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:6562976 original size:61 final size:63
Alignment explanation
Indices: 6562538--6563136 Score: 481
Period size: 65 Copynumber: 9.3 Consensus size: 63
6562528 GAAATTTATA
* * * * * *
6562538 TTTAAGTT-AAGGGTTAGTGTTTTTAAGTTAAGAGATAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAA-TTCAAGGGTTAGGGTTTTAAAGTTAAGGGTTAGGGCTTTTAAGTTAAGGG-TTAGTGTT
* * * *
6562602 TTTAGGTT-AAGGGTTTATGGTTTTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
1 TTTA-ATTCAAGGG-TTAGGGTTTTAAAGTTAAGGGTTAGGGCTTTTAAGTTAAGGG-TTAGTGT
6562666 T
63 T
* * *
6562667 TTTAGGTT-AAGGGTTTATGGTTTTTAAGTTAAGGGTTTAGGG-TTTTAAAGTTAAGGGTTAAG-
1 TTTA-ATTCAAGGG-TTAGGGTTTTAAAGTTAAGGG-TTAGGGCTTTT-AAGTTAAGGGTT-AGT
6562729 GTT
61 GTT
* * * * *
6562732 TTTAAGTT-AAGAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTTA-TG
1 TTTAA-TTCAAG-GGTTAGGGTTTTAAAGTTAAGGG-TTAGGGCTTTTAAGTTAAGGG-TTAGT-
6562795 GTT
61 GTT
* * * * * **
6562798 TTAAAGTCAAGGATTAGGGTTTTTAAGTTAAGGGTTATGATTTTTAAGTTAAGGGTTTAGTGTT
1 TTTAATTCAAGGGTTAGGGTTTTAAAGTTAAGGGTTAGGGCTTTTAAGTTAAGGG-TTAGTGTT
*
6562862 TTTAATTCAAGGGTTAGGGTTTTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGTGTT
1 TTTAATTCAAGGGTTAGGGTTTTAAAGTTAAGGGTTAGGGCTTTTAAGTTAAGGGTTAGTGTT
* * **
6562925 TTTTATTTAAGGGTTA-GG-TTTAGGGGTT-AGGGTTAGGGCTTTTAAGTTAAGGGTTTAAG-GT
1 TTTAATTCAAGGGTTAGGGTTTTA-AAGTTAAGGGTTAGGGCTTTTAAGTTAAGGG-TT-AGTGT
6562986 T
63 T
* * * * * * *
6562987 TTAAAGTCAAGAGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTTAGAGTT
1 TTTAATTCAAGGGTTAGGGTTTTAAAGTTAAGGG-TTAGGGCTTTTAAGTTAAGGG-TTAGTGTT
* * * * *
6563052 TTTAGGTT-AAGGGTTTATGGTTTT-AAGTCAAGGGTTTAGGGTTTTTAA-TTCAAGGGTTAGAG
1 TTTA-ATTCAAGGG-TTAGGGTTTTAAAGTTAAGGG-TTAGGGCTTTTAAGTT-AAGGGTTAGTG
6563114 TT
62 TT
6563116 TTTAAGTT-AAGGGTTAGGGTT
1 TTTAA-TTCAAGGGTTAGGGTT
6563137 AGGATTTTTA
Statistics
Matches: 461, Mismatches: 49, Indels: 51
0.82 0.09 0.09
Matches are distributed among these distances:
61 28 0.06
62 21 0.05
63 36 0.08
64 115 0.25
65 216 0.47
66 45 0.10
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (63 bp):
TTTAATTCAAGGGTTAGGGTTTTAAAGTTAAGGGTTAGGGCTTTTAAGTTAAGGGTTAGTGTT
Found at i:6563174 original size:22 final size:22
Alignment explanation
Indices: 6562538--6563165 Score: 707
Period size: 22 Copynumber: 29.0 Consensus size: 22
6562528 GAAATTTATA
*
6562538 TTTAAGTTAAGGG-TTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562559 TTTAAGTTAAGAG-ATAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6562580 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562602 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
6562624 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6562645 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562667 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6562689 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562711 TTAAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562732 TTTAAGTTAAGAGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6562754 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562776 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
6562798 TTAAAGTCAA-GGATTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562819 TTTAAGTTAAGGG-TTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
6562840 TTTAAGTTAAGGGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6562862 TTTAA-TTCAAGGG-TTAGGGTT
1 TTTAAGTT-AAGGGTTTAGGGTT
*
6562883 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
6562904 TTTAAGTTAAGGG-TTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6562925 TTTTATTTAAGGG-TTA-GGTT
1 TTTAAGTTAAGGGTTTAGGGTT
**** *
6562945 TAGGGGTT-AGGG-TTAGGGCT
1 TTTAAGTTAAGGGTTTAGGGTT
*
6562965 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
6562987 TTAAAGTCAAGAG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6563008 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6563030 TTTAGGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
6563052 TTTAGGTTAAGGGTTTATGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
6563073 TTTAAGTCAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
6563095 TTTAA-TTCAAGGG-TTAGAGTT
1 TTTAAGTT-AAGGGTTTAGGGTT
*
6563116 TTTAAGTTAAGGGTTAGGGTTAGGATT
1 TTTAAGTTAAGGG-T----TTAGGGTT
6563143 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
6563165 T
1 T
6563166 GTCAATTAAA
Statistics
Matches: 512, Mismatches: 75, Indels: 39
0.82 0.12 0.06
Matches are distributed among these distances:
19 7 0.01
20 13 0.03
21 219 0.43
22 253 0.49
26 1 0.00
27 19 0.04
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:6565595 original size:51 final size:51
Alignment explanation
Indices: 6565551--6565650 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
6565541 AATTATTTAA
6565551 AAATAGGGATTTAAGAGAAATTTA-AGAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGCAAATTGAGATT
* * * *
6565602 AAATATGGATTTCAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGA
6565651 GGAAATTGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.45, C:0.03, G:0.26, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGATT
Found at i:6565648 original size:11 final size:11
Alignment explanation
Indices: 6565628--6565674 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
6565618 GAAATTTGGA
*
6565628 AGGAATTTGAG
1 AGGAAATTGAG
*
6565639 AGCAAATTGAG
1 AGGAAATTGAG
6565650 AGGAAATTGAG
1 AGGAAATTGAG
6565661 AGGAAATTTGAG
1 AGGAAA-TTGAG
6565673 AG
1 AG
6565675 ATGATTAGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
11 25 0.78
12 7 0.22
ACGTcount: A:0.43, C:0.02, G:0.34, T:0.21
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:6565653 original size:22 final size:23
Alignment explanation
Indices: 6565615--6565674 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
6565605 TATGGATTTC
*
6565615 AGAG-AAATTTG-GAAGGAATTTG
1 AGAGCAAATTTGAG-AGGAAATTG
6565637 AGAGCAAA-TTGAGAGGAAATTG
1 AGAGCAAATTTGAGAGGAAATTG
*
6565659 AGAGGAAATTTGAGAG
1 AGAGCAAATTTGAGAG
6565675 ATGATTAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 22 0.67
23 11 0.33
ACGTcount: A:0.43, C:0.02, G:0.33, T:0.22
Consensus pattern (23 bp):
AGAGCAAATTTGAGAGGAAATTG
Found at i:6580189 original size:8 final size:7
Alignment explanation
Indices: 6580172--6580202 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
6580162 AAATAGAATT
6580172 AAAAAGA
1 AAAAAGA
6580179 AAAAAGA
1 AAAAAGA
6580186 AAAAAGAA
1 AAAAAG-A
6580194 AAAAAGA
1 AAAAAGA
6580201 AA
1 AA
6580203 GCCAAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:6580191 original size:14 final size:15
Alignment explanation
Indices: 6580172--6580202 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6580162 AAATAGAATT
6580172 AAAAAG-AAAAAAGA
1 AAAAAGAAAAAAAGA
6580186 AAAAAGAAAAAAAGA
1 AAAAAGAAAAAAAGA
6580201 AA
1 AA
6580203 GCCAAATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAGA
Found at i:6581025 original size:17 final size:19
Alignment explanation
Indices: 6580998--6581032 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6580988 GTAACTTTTA
6580998 AAAGTTAAAACT-AAAAAT
1 AAAGTTAAAACTGAAAAAT
6581016 AAAG-TAAAACTGAAAAA
1 AAAGTTAAAACTGAAAAA
6581033 CAGAGGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.69, C:0.06, G:0.09, T:0.17
Consensus pattern (19 bp):
AAAGTTAAAACTGAAAAAT
Found at i:6581390 original size:38 final size:38
Alignment explanation
Indices: 6581347--6581422 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
6581337 TCCCTCTGTT
*
6581347 CCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCTC
1 CCTCTGTTTATTTTCCTTTCTTTTCTGCCGATTTGCTC
*
6581385 CCTCTGTTTCTTTTCCTTTCTTTTCTGCCGATTTGCTC
1 CCTCTGTTTATTTTCCTTTCTTTTCTGCCGATTTGCTC
6581423 AGTTTCTGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.04, C:0.29, G:0.11, T:0.57
Consensus pattern (38 bp):
CCTCTGTTTATTTTCCTTTCTTTTCTGCCGATTTGCTC
Found at i:6583811 original size:54 final size:53
Alignment explanation
Indices: 6583753--6583951 Score: 139
Period size: 54 Copynumber: 3.5 Consensus size: 53
6583743 TGAATCTAGA
6583753 TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATACTTAATAT
1 TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATA-TTAATAT
* * * * *
6583807 TAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATA
1 TAATTATTTTAAATT-T-TATTA-A--ATCATATATT-TTA-ATTA--AAA-T-ATAT--TAATA
6583872 T
53 T
* * * *
6583873 TGATTA-TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAA
1 TAATTATTTTA-AATTTTATTAAATCATATATTTTAATTAAAATATA-TTAATAT
* *
6583927 TAATTATGTTTAAATATGATTAAAT
1 TAATTAT-TTTAAATTTTATTAAAT
6583952 TATTTATTAT
Statistics
Matches: 111, Mismatches: 17, Indels: 33
0.69 0.11 0.20
Matches are distributed among these distances:
54 23 0.21
55 15 0.14
56 9 0.08
57 4 0.04
59 13 0.12
60 4 0.04
61 12 0.11
63 4 0.04
64 6 0.05
65 7 0.06
66 14 0.13
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.50
Consensus pattern (53 bp):
TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATATTAATAT
Found at i:6583913 original size:18 final size:17
Alignment explanation
Indices: 6583885--6583919 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6583875 ATTATTAAGA
*
6583885 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
6583902 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
6583920 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:6584174 original size:16 final size:16
Alignment explanation
Indices: 6584153--6584185 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6584143 TTGATTTGCT
6584153 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
6584169 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
6584185 A
1 A
6584186 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:6585105 original size:22 final size:22
Alignment explanation
Indices: 6585054--6585109 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
6585044 TCACATTCAG
* *
6585054 CACCAATCCACCTCCAGTCCGG
1 CACCGATCCACCTCCAGTCCGC
* *
6585076 CACCGATCCACCTCCAGTTCTC
1 CACCGATCCACCTCCAGTCCGC
*
6585098 CACGGATCCACC
1 CACCGATCCACC
6585110 CATTTCCCCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.21, C:0.50, G:0.12, T:0.16
Consensus pattern (22 bp):
CACCGATCCACCTCCAGTCCGC
Found at i:6585224 original size:22 final size:22
Alignment explanation
Indices: 6585198--6585239 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
6585188 AACCTTTACC
6585198 TCCGGCACCAATCCACCTCCGG
1 TCCGGCACCAATCCACCTCCGG
*
6585220 TCCGGCACCGATCCACCTCC
1 TCCGGCACCAATCCACCTCC
6585240 AGTTCTCCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.17, C:0.52, G:0.17, T:0.14
Consensus pattern (22 bp):
TCCGGCACCAATCCACCTCCGG
Found at i:6585373 original size:22 final size:22
Alignment explanation
Indices: 6585347--6585393 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
6585337 AACCTTTACC
6585347 TCCGGCACCAATCCACCTCCGG
1 TCCGGCACCAATCCACCTCCGG
*
6585369 TCCGGCACCGATCCACCTCCGG
1 TCCGGCACCAATCCACCTCCGG
6585391 TCC
1 TCC
6585394 TCCACGGCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.51, G:0.19, T:0.15
Consensus pattern (22 bp):
TCCGGCACCAATCCACCTCCGG
Found at i:6585405 original size:22 final size:22
Alignment explanation
Indices: 6585347--6585407 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
6585337 AACCTTTACC
* *
6585347 TCCGGCACCAATCCACCTCCGG
1 TCCGCCACCGATCCACCTCCGG
*
6585369 TCCGGCACCGATCCACCTCCGG
1 TCCGCCACCGATCCACCTCCGG
* * *
6585391 TCCTCCACGGCTCCACC
1 TCCGCCACCGATCCACC
6585408 CATTTCCAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.15, C:0.52, G:0.18, T:0.15
Consensus pattern (22 bp):
TCCGCCACCGATCCACCTCCGG
Found at i:6585436 original size:149 final size:149
Alignment explanation
Indices: 6585009--6585414 Score: 713
Period size: 149 Copynumber: 2.7 Consensus size: 149
6584999 AAATCCCTAG
* * * * * * * *
6585009 TGCCCAACTGCCCTCCTCCATTTTTTACTCAACCTTCACATTCAGCACCAATCCACCTCCAGTCC
1 TGCCCGACTGCCCTCCTCCCTTTTTTTCTCAACCTTTACCTCCGGCACCAATCCACCTCCGGTCC
6585074 GGCACCGATCCACCTCCAGTTCTCCACGGATCCACCCATTTCCCCTATTTCTCGTTTCCCTTCTT
66 GGCACCGATCCACCTCCAGTTCTCCACGGATCCACCCATTTCCCCTATTTCTCGTTTCCCTTCTT
6585139 CCACAAATCCCTAACCCCT
131 CCACAAATCCCTAACCCCT
6585158 TGCCCGACTGCCCTCCTCCCTTTTTTTCTCAACCTTTACCTCCGGCACCAATCCACCTCCGGTCC
1 TGCCCGACTGCCCTCCTCCCTTTTTTTCTCAACCTTTACCTCCGGCACCAATCCACCTCCGGTCC
6585223 GGCACCGATCCACCTCCAGTTCTCCACGGATCCACCCATTTCCCCTATTTCTCGTTTCCCTTCTT
66 GGCACCGATCCACCTCCAGTTCTCCACGGATCCACCCATTTCCCCTATTTCTCGTTTCCCTTCTT
6585288 CCACAAATCCCTAACCCCT
131 CCACAAATCCCTAACCCCT
6585307 TGCCCGACTGCCCTCCTCCCTTTTTTTCTCAACCTTTACCTCCGGCACCAATCCACCTCCGGTCC
1 TGCCCGACTGCCCTCCTCCCTTTTTTTCTCAACCTTTACCTCCGGCACCAATCCACCTCCGGTCC
* * *
6585372 GGCACCGATCCACCTCCGGTCCTCCACGGCTCCACCCATTTCC
66 GGCACCGATCCACCTCCAGTTCTCCACGGATCCACCCATTTCC
6585415 AGAATTAGAG
Statistics
Matches: 246, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
149 246 1.00
ACGTcount: A:0.16, C:0.47, G:0.10, T:0.28
Consensus pattern (149 bp):
TGCCCGACTGCCCTCCTCCCTTTTTTTCTCAACCTTTACCTCCGGCACCAATCCACCTCCGGTCC
GGCACCGATCCACCTCCAGTTCTCCACGGATCCACCCATTTCCCCTATTTCTCGTTTCCCTTCTT
CCACAAATCCCTAACCCCT
Found at i:6588053 original size:22 final size:24
Alignment explanation
Indices: 6588006--6588059 Score: 76
Period size: 22 Copynumber: 2.3 Consensus size: 24
6587996 GGACCTTAGC
6588006 GTGCTCTCTGATTATTAGCACATTA
1 GTGCTCTCT-ATTATTAGCACATTA
*
6588031 GTGCTCTCT-TTA-TAGCACTTTA
1 GTGCTCTCTATTATTAGCACATTA
6588053 GTGCTCT
1 GTGCTCT
6588060 ATGTTCAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 16 0.57
23 3 0.11
25 9 0.32
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.43
Consensus pattern (24 bp):
GTGCTCTCTATTATTAGCACATTA
Found at i:6592585 original size:18 final size:18
Alignment explanation
Indices: 6592562--6592598 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6592552 AATTGTAGAT
*
6592562 CGATTGACAAAGTCTGCC
1 CGATTGACAAAGTCCGCC
*
6592580 CGATTGACGAAGTCCGCC
1 CGATTGACAAAGTCCGCC
6592598 C
1 C
6592599 ATTTTCTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.19
Consensus pattern (18 bp):
CGATTGACAAAGTCCGCC
Found at i:6594914 original size:22 final size:22
Alignment explanation
Indices: 6594889--6594950 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
6594879 TATCTGATTA
6594889 TTAGCACATTAGTGCTCTCCGT
1 TTAGCACATTAGTGCTCTCCGT
* *
6594911 TTAGCACATTCGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCCGT
* * *
6594933 ATAGCACTTTAGTACTCT
1 TTAGCACATTAGTGCTCT
6594951 ATGTTCAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCCGT
Found at i:6595932 original size:15 final size:14
Alignment explanation
Indices: 6595907--6595950 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
6595897 TCGCCCATAT
6595907 TATTTTTAATTTAA
1 TATTTTTAATTTAA
6595921 TATTTATTAATTTTATA
1 TATTT-TTAA-TTTA-A
*
6595938 TATTTTTTATTTA
1 TATTTTTAATTTA
6595951 TTGATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 5 0.19
15 8 0.31
16 7 0.27
17 6 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTTTAATTTAA
Done.