Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30015117
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1306243 characters in sequence are not A, C, G, or T
File 42 of 85
Found at i:14374163 original size:34 final size:35
Alignment explanation
Indices: 14374119--14374185 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14374109 CAGTAAAATG
*
14374119 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
14374153 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
14374186 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14374189 original size:14 final size:15
Alignment explanation
Indices: 14374113--14374189 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14374103 GATTGCCAGT
* *
14374113 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
14374127 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
14374141 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
14374161 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
14374176 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
14374190 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:14379816 original size:50 final size:50
Alignment explanation
Indices: 14379756--14379855 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
14379746 CGCTTAGAAT
*
14379756 ATCGTTAGATAGGCAGGTAGTACATATGAGGTGTATTGAACTGTAAGTCC
1 ATCGTTAGATACGCAGGTAGTACATATGAGGTGTATTGAACTGTAAGTCC
14379806 ATCGTTAGATACGCAGGTAGTACATATGAGGTGTATTGAACTGTAAGTCC
1 ATCGTTAGATACGCAGGTAGTACATATGAGGTGTATTGAACTGTAAGTCC
14379856 TTCAATTTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (50 bp):
ATCGTTAGATACGCAGGTAGTACATATGAGGTGTATTGAACTGTAAGTCC
Found at i:14379973 original size:24 final size:24
Alignment explanation
Indices: 14379895--14379980 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 24
14379885 AACCATAATT
*
14379895 GGTAAGCTCCAT-TGAGCTGAAATAC
1 GGTAAGCT-CATAAGAGCTGAAAT-C
*
14379920 GGTAAGCTCATAAAAGCTGAGAATC
1 GGTAAGCTCATAAGAGCTGA-AATC
14379945 GGTAAGCTC-TAACGAGCTGAAATC
1 GGTAAGCTCATAA-GAGCTGAAATC
*
14379969 GGTAAGATCATA
1 GGTAAGCTCATA
14379981 CGAACTATGG
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
24 18 0.34
25 32 0.60
26 3 0.06
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (24 bp):
GGTAAGCTCATAAGAGCTGAAATC
Found at i:14385990 original size:85 final size:85
Alignment explanation
Indices: 14385853--14386012 Score: 211
Period size: 85 Copynumber: 1.9 Consensus size: 85
14385843 TGTAACTTCA
* *
14385853 ATCTACTCTACTGTAACTCCATGGGGATGAGATTGGTATCTTCAACCTGCTCCACTGCAAATTCA
1 ATCTACTCTACTGTAACTCAATGGGGATGAGATTGGTATCTTCAACCTGCTCCACTACAAATTCA
14385918 GGGAGATAAGGCTTGATGCG
66 GGGAGATAAGGCTTGATGCG
* * *
14385938 ATCTACTCTACTGTAACTCAATGGGGATAAGATATGTGGT-T-TT-AATCC-GCTCCATTACAAC
1 ATCTACTCTACTGTAACTCAATGGGGAT--GAGAT-TGGTATCTTCAA-CCTGCTCCACTACAAA
14385999 TTCAGGGAGATAAG
62 TTCAGGGAGATAAG
14386013 ATTGGTTTCT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
85 53 0.80
86 4 0.06
87 5 0.08
88 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (85 bp):
ATCTACTCTACTGTAACTCAATGGGGATGAGATTGGTATCTTCAACCTGCTCCACTACAAATTCA
GGGAGATAAGGCTTGATGCG
Found at i:14386013 original size:44 final size:44
Alignment explanation
Indices: 14385963--14386268 Score: 173
Period size: 44 Copynumber: 7.1 Consensus size: 44
14385953 ACTCAATGGG
* *
14385963 GATAAGATATGTGGTTTTAATCCGCTCCATTACAACTTCAGGGA
1 GATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
* ** * **
14386007 GATAAGAT-TG-GTTTCTTCTGTCTGCTCTGCTGCAACTTCAGGGA
1 GATAAGATATGTGGTT-TT-AATCCGCTCCACTGCAACTTCAGGGA
* * *** ** * *
14386051 GATAA-A-A-CTGGATGCGATCTACTCTACTGCAACTTCAGAGA
1 GATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
*
14386092 GATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
1 GATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
* ** * * * **
14386136 GATAAGAT-TG-GTTTCTTTTGTCTGCTCTACTGCAATTTCAAAGA
1 GATAAGATATGTG-GT-TTTAATCCGCTCCACTGCAACTTCAGGGA
* * * * * * * *
14386180 GATAAG--A-CTGGATGTGATCTGATCTACTGCAACTTCAGAGA
1 GATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
* * *
14386221 TATAAGATCTGTGGTTTTAATCCGCTCCACTTCAACTTCAGGGA
1 GATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
14386265 GATA
1 GATA
14386269 GGATTGGTTT
Statistics
Matches: 191, Mismatches: 57, Indels: 28
0.69 0.21 0.10
Matches are distributed among these distances:
41 54 0.28
42 5 0.03
43 11 0.06
44 121 0.63
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
GATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
Found at i:14386112 original size:129 final size:128
Alignment explanation
Indices: 14385899--14386280 Score: 527
Period size: 129 Copynumber: 3.0 Consensus size: 128
14385889 TATCTTCAAC
* * * *
14385899 CTGCTCCACTGCAAATTCAGGGAGATAAGGCTTGATGCGATCTACTCTACTGTAAC-TCA-ATGG
1 CTGCTCTACTGCAAATTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTCAGA--G
*
14385962 GGATAAGATATGTGGTTTTAATCCGCTCCATTACAACTTCAGGGAGATAAGATTGGTTTCTTCTG
64 AGATAAGATATGTGGTTTTAATCCGCTCCATT-CAACTTCAGGGAGATAAGATTGGTTTCTTCTG
14386027 T
128 T
* * *
14386028 CTGCTCTGCTGCAACTTCAGGGAGATAAAACTGGATGCGATCTACTCTACTGCAACTTCAGAGAG
1 CTGCTCTACTGCAAATTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTCAGAGAG
* * *
14386093 ATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTTGT
66 ATAAGATATGTGGTTTTAATCCGCTCCA-TTCAACTTCAGGGAGATAAGATTGGTTTCTTCTGT
* ** *
14386157 CTGCTCTACTGCAATTTCAAAGAGATAAGACTGGATGTGATCTGA-TCTACTGCAACTTCAGAGA
1 CTGCTCTACTGCAAATTCAGGGAGATAAGACTGGATGCGATCT-ACTCTACTGCAACTTCAGAGA
* * *
14386221 TATAAGATCTGTGGTTTTAATCCGCTCCACTTCAACTTCAGGGAGATAGGATTGGTTTCT
65 GATAAGATATGTGGTTTTAATCCGCTCCA-TTCAACTTCAGGGAGATAAGATTGGTTTCT
14386281 GATTTGTTCT
Statistics
Matches: 228, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
129 222 0.97
130 5 0.02
131 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (128 bp):
CTGCTCTACTGCAAATTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTCAGAGAG
ATAAGATATGTGGTTTTAATCCGCTCCATTCAACTTCAGGGAGATAAGATTGGTTTCTTCTGT
Found at i:14398964 original size:108 final size:107
Alignment explanation
Indices: 14398770--14399191 Score: 609
Period size: 108 Copynumber: 4.0 Consensus size: 107
14398760 TTAAAAAGGG
*
14398770 AAAATTTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTG
1 AAAA-TTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
* *
14398835 GGTTTCGATTTTTTTCGTTCGACCAAATAGCAAAATATCCTATT
65 GGTTTCGA-TTTTTTCGTTCGACCAAATAGCCAAATATCCTTTT
* * * *
14398879 AAAATTTCAAAGTCAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGTCCTAATGTGCTGG
1 AAAATTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
* *
14398944 GTTTCGATTTTTTTCGTTCGACCAAATTGCTAAATATCCTTTT
66 GTTTCGA-TTTTTTCGTTCGACCAAATAGCCAAATATCCTTTT
* * * *
14398987 AAATTTTCAAAGTAAGGTAATATTTTGCGTTTGGAAATTTGAGAAAACGTGTCCTAATGTGCTGG
1 AAAATTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
* *
14399052 GTTTCGATTTTTTCGTTTGACCAAATAGCCAAATAACCTTTT
66 GTTTCGATTTTTTCGTTCGACCAAATAGCCAAATATCCTTTT
* * *
14399094 AAAATTTCAAAGTAA-G-ACTATTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGATGG
1 AAAATTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
* *
14399156 GTTTTGA-TTTCTCGTTCGACCAAATAGCCAAATATC
66 GTTTCGATTTTTTCGTTCGACCAAATAGCCAAATATC
14399192 ATCTTAAATC
Statistics
Matches: 287, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
103 26 0.09
104 24 0.08
105 23 0.08
106 1 0.00
107 45 0.16
108 164 0.57
109 4 0.01
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (107 bp):
AAAATTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
GTTTCGATTTTTTCGTTCGACCAAATAGCCAAATATCCTTTT
Found at i:14410836 original size:45 final size:45
Alignment explanation
Indices: 14410778--14410967 Score: 263
Period size: 45 Copynumber: 4.2 Consensus size: 45
14410768 ACAGATCAGT
** * * * *
14410778 GAAGATAGCAGATCTTACCTTCTTGTACTGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
*
14410823 GAAGATAGCAGATCTTGTATTCCTGTATTGGCAGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
*
14410868 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
* * *
14410913 AAAGATAGCAGATCTTGTATTCCTGTATTGGCAGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
* *
14410958 AAAGCTAGCA
1 GAAGATAGCA
14410968 AATCCTATCT
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 133 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
Found at i:14411116 original size:44 final size:44
Alignment explanation
Indices: 14411055--14411431 Score: 266
Period size: 44 Copynumber: 8.7 Consensus size: 44
14411045 TCGCATCCAG
*
14411055 TCTTATATCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * *
14411099 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATC--AA-AATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAAC-CA-A
* * * * *
14411143 TCTTATCTCTCTGAAGTTGCAGT--AG-AG-TAGATAGCATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAA
* * *
14411184 TCTTATCTCCCTGAAGTAGTAGTGGAGGAGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * ** *
14411228 TCCTATCTCCCT-AGAGTTGCAGTGGAGCGGA-TTAA-AACCACAGA
1 TCTTATCTCCCTGA-AGTTGCAGTGGAGCAGACAGAAGAAAC-CA-A
* * * * * * *
14411272 TCTTATCTCTCTGAAGTTCCAGTAGAGCAGATC---ACATA-TAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAACCAA
*
14411313 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAACAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * *
14411357 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATC--AA-AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAAC-CA-A
* *
14411401 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
14411432 TCGTATCCAG
Statistics
Matches: 259, Mismatches: 49, Indels: 50
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.00
41 50 0.19
42 14 0.05
43 22 0.08
44 166 0.64
45 6 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
Found at i:14411191 original size:85 final size:85
Alignment explanation
Indices: 14410973--14411465 Score: 337
Period size: 85 Copynumber: 5.7 Consensus size: 85
14410963 TAGCAAATCC
* * * * * * * *
14410973 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAATA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TAGAATC-CAG-TCTTATCTCCCTGAAGTTGCAGTG
** **
14411038 GAGCAAATC-GCATC-CAG-TCT
63 GAGCGGATCAAAATCACAGATCT
* * * *
14411058 TATATCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGT--AG-AG-CAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGT
14411122 GGAGCGGATCAAAATCACAGATCT
62 GGAGCGGATCAAAATCACAGATCT
* * * * *
14411146 TATCTCTCTGAAGTTGCAGTAGAGTAGATAGCATCCAGTCTTATCTCCCTGAAGTAGTAGTGGAG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* *
14411211 -GAGA-CAGAAGA-AACCA-ATCC
66 CG-GATCA-AA-ATCA-CAGATCT
* * * * * *
14411231 TATCTCCCT-AGAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTCCAGT
1 TATCTCCCTGA-AGTTGCAGTAGAGCAGA-TAGAATC-CAG-TCTTATCTCCCTGAAGTTGCAGT
* * * *
14411295 AGAGCAGATC-ACAT-ATAG-TCT
62 GGAGCGGATCAAAATCACAGATCT
** * *
14411316 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAAACAATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGT--AG-AG-CAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGT
*
14411380 GGAGCGGATCAAAACCACAGATCT
62 GGAGCGGATCAAAATCACAGATCT
* * * * *
14411404 TATCTCTCTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCACTGAGGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGTG
14411466 TAACAGACTG
Statistics
Matches: 314, Mismatches: 65, Indels: 58
0.72 0.15 0.13
Matches are distributed among these distances:
84 11 0.04
85 183 0.58
86 23 0.07
87 19 0.06
88 71 0.23
89 7 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
CGGATCAAAATCACAGATCT
Found at i:14411198 original size:129 final size:129
Alignment explanation
Indices: 14410968--14411479 Score: 785
Period size: 129 Copynumber: 4.0 Consensus size: 129
14410958 AAAGCTAGCA
* *
14410968 AATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * *
14411033 CAATAGAGCAAATCGCATCCAGTCTTATATCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC
66 CAGTAGAGCAGATAGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC
*
14411097 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAATCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * *
14411162 CAGTAGAGTAGATAGCATCCAGTCTTATCTCCCTGAAGTAGTAGTGGAGGAGACAGAAGAAACC
66 CAGTAGAGCAGATAGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC
*
14411226 AATCCTATCTCCCT-AGAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 AATCCTATCTCCCTGA-AGTTGCAGTGGAGCGGATCAAAACCACAGATCTTATCTCTCTGAAGTT
* ** *
14411290 CCAGTAGAGCAGATCA-CATATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAA
65 GCAGTAGAGCAGAT-AGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAC
14411354 C
129 C
14411355 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * * * * *
14411420 CAGTAGAGCAGATCGTATCCAGTCTTATCTCACTGAGGTTGCAGTGTAACAGACTGAAGA
66 CAGTAGAGCAGATAGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGA
14411480 TAGCAAGTGT
Statistics
Matches: 347, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
128 1 0.00
129 344 0.99
130 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (129 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAGATCTTATCTCTCTGAAGTTG
CAGTAGAGCAGATAGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC
Found at i:14413445 original size:17 final size:19
Alignment explanation
Indices: 14413423--14413460 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14413413 AACACCATGC
14413423 TTCAAA-AAGGAAA-ATTT
1 TTCAAAGAAGGAAATATTT
14413440 TTCAAAGTAAGGAAATATTT
1 TTCAAAG-AAGGAAATATTT
14413460 T
1 T
14413461 GCATTTGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.34
Consensus pattern (19 bp):
TTCAAAGAAGGAAATATTT
Found at i:14413709 original size:108 final size:107
Alignment explanation
Indices: 14413439--14413864 Score: 592
Period size: 107 Copynumber: 4.0 Consensus size: 107
14413429 AAGGAAAATT
* * * *
14413439 TTTCAAAGTAAGGAAATATTTTGCATTTGGAAATTTGAGAAAACGTGTCTTAATGTGCTGGGTTT
1 TTTCAAAGTAAGGTAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
14413504 CGATTTTTTTCGTTCGACCAAATAGCAAAATATCCTATTAAAA
66 CGA-TTTTTTCGTTCGACCAAATAGCTAAATATCCTTTTAAAA
* * *
14413547 TTTCAAAGTAAGG-AATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTACTGGGTTT
1 TTTCAAAGTAAGGTAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
*
14413611 CGATTTTTTTTGTTCGACCAAATAGCTAAATATCCTTTTAAAA
66 CGA-TTTTTTCGTTCGACCAAATAGCTAAATATCCTTTTAAAA
* *
14413654 TTTCAAAGTAAGGTAATATTTTGCGTTTGCAAATTTGAGAAAACGTGCCCTAATGTGCTGAGTTT
1 TTTCAAAGTAAGGTAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * *
14413719 CGATTTTTTTGTTTGACCAAATAG-TCAAATAACCTTTTAAAA
66 CGATTTTTTCGTTCGACCAAATAGCT-AAATATCCTTTTAAAA
* *
14413761 TTTCAAAGTAAGACT-ATATTTTGCGTTTGAAAATTTGAG-AAACGTGCCCTAATGTGCTGGGTT
1 TTTCAAAGTAAG-GTAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTT
* * * *
14413824 TCG-GTTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAA
65 TCGATTTTTTCGTTCGACCAAATAGCTAAATATCCTTTTAAA
14413865 TCTTAATCCA
Statistics
Matches: 288, Mismatches: 26, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
105 30 0.10
106 27 0.09
107 168 0.58
108 63 0.22
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (107 bp):
TTTCAAAGTAAGGTAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTTCGTTCGACCAAATAGCTAAATATCCTTTTAAAA
Found at i:14415812 original size:418 final size:419
Alignment explanation
Indices: 14415035--14415871 Score: 1667
Period size: 418 Copynumber: 2.0 Consensus size: 419
14415025 TGACCATAAA
14415035 AATATTCTTTTTTTTAATTGAATCCTTATTACAAAGTTAAGTTTTTGTTCTTCAAATTTATCGTT
1 AATATTCTTTTTTTTAATTGAATCCTTATTACAAAGTTAAGTTTTTGTTCTTCAAATTTATCGTT
14415100 AAAAGGAAATTTATTTTTTACAAGTGTATTTTATTTCAAAAAATATTATTTAATGCAAGAAAATT
66 AAAAGGAAATTTATTTTTTACAAGTGTATTTTATTTCAAAAAATATTATTTAATGCAAGAAAATT
14415165 CTTAAACAATGTTTTAGGTATAAACAAATATATATTTCCTAATGACACGTGTCACATTATTATCC
131 CTTAAACAATGTTTTAGGTATAAACAAATATATATTTCCTAATGACACGTGTCACATTATTATCC
14415230 TTTTCCTTTTTTACCAAAGGTTTTGACTTTATTCTATATAAGATACATTTAGTTATCTTATTGAC
196 TTTTCCTTTTTTACCAAAGGTTTTGACTTTATTCTATATAAGATACATTTAGTTATCTTATTGAC
14415295 AATAAAAGTGTACATGTGCTAGTTTATATTGACCTGAAATATGGTTCTAAAACTTTACTCAAGCT
261 AATAAAAGTGTACATGTGCTAGTTTATATTGACCTGAAATATGGTTCTAAAACTTTACTCAAGCT
14415360 CATTTATATTTGTAAATAGTTATTATAAACTTATTTTAGGTTCGCTCGTATTTTAAAAAAAATAT
326 CATTTATATTTGTAAATAGTTATTATAAACTTATTTTAGGTTCGCTCGTATTTTAAAAAAAATAT
14415425 TTCTAACATTTTAATTT-ATAATTTCATT
391 TTCTAACATTTTAATTTAATAATTTCATT
14415453 AATATTCTTTTTTTTAATTGAATCCTTATTACAAAGTTAAGTTTTTGTTCTTCAAATTTATCGTT
1 AATATTCTTTTTTTTAATTGAATCCTTATTACAAAGTTAAGTTTTTGTTCTTCAAATTTATCGTT
14415518 AAAAGGAAATTTATTTTTTACAAGTGTATTTTATTTCAAAAAATATTATTTAATGCAAGAAAATT
66 AAAAGGAAATTTATTTTTTACAAGTGTATTTTATTTCAAAAAATATTATTTAATGCAAGAAAATT
14415583 CTTAAACAATGTTTTAGGTATAAACAAATATATATTTCCTAATGACACGTGTCACATTATTATCC
131 CTTAAACAATGTTTTAGGTATAAACAAATATATATTTCCTAATGACACGTGTCACATTATTATCC
14415648 TTTTCCTTTTTTACCAAAGGTTTTGACTTTATTCTATATAAGATACATTTAGTTATCTTATTGAC
196 TTTTCCTTTTTTACCAAAGGTTTTGACTTTATTCTATATAAGATACATTTAGTTATCTTATTGAC
14415713 AATAAAAGTGTACATGTGCTAGTTTATATTGACCTGAAATATGGTTCTAAAACTTTACTCAAGCT
261 AATAAAAGTGTACATGTGCTAGTTTATATTGACCTGAAATATGGTTCTAAAACTTTACTCAAGCT
14415778 CATTTATATTTGTAAATAGTTATTATAAACTTATTTTAGGTTCGCTCGTATTTTAAAAAAAATAT
326 CATTTATATTTGTAAATAGTTATTATAAACTTATTTTAGGTTCGCTCGTATTTTAAAAAAAATAT
14415843 TTCTAACATTTTAATTTAATAATTTCATT
391 TTCTAACATTTTAATTTAATAATTTCATT
14415872 TATTAAAATT
Statistics
Matches: 418, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
418 407 0.97
419 11 0.03
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (419 bp):
AATATTCTTTTTTTTAATTGAATCCTTATTACAAAGTTAAGTTTTTGTTCTTCAAATTTATCGTT
AAAAGGAAATTTATTTTTTACAAGTGTATTTTATTTCAAAAAATATTATTTAATGCAAGAAAATT
CTTAAACAATGTTTTAGGTATAAACAAATATATATTTCCTAATGACACGTGTCACATTATTATCC
TTTTCCTTTTTTACCAAAGGTTTTGACTTTATTCTATATAAGATACATTTAGTTATCTTATTGAC
AATAAAAGTGTACATGTGCTAGTTTATATTGACCTGAAATATGGTTCTAAAACTTTACTCAAGCT
CATTTATATTTGTAAATAGTTATTATAAACTTATTTTAGGTTCGCTCGTATTTTAAAAAAAATAT
TTCTAACATTTTAATTTAATAATTTCATT
Found at i:14418875 original size:20 final size:20
Alignment explanation
Indices: 14418850--14418887 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14418840 TTTCACCTAA
14418850 AGTATCAAAGAAAGTTGAGG
1 AGTATCAAAGAAAGTTGAGG
14418870 AGTATCAAAGAAAGTTGA
1 AGTATCAAAGAAAGTTGA
14418888 ATTGAGAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.26, T:0.21
Consensus pattern (20 bp):
AGTATCAAAGAAAGTTGAGG
Found at i:14422137 original size:12 final size:12
Alignment explanation
Indices: 14422115--14422149 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
14422105 CTTTACTTAC
14422115 TCACTTACTTGT
1 TCACTTACTTGT
14422127 TCACTTACTTGT
1 TCACTTACTTGT
*
14422139 TTACTTACTTG
1 TCACTTACTTG
14422150 CTTACTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.17, C:0.23, G:0.09, T:0.51
Consensus pattern (12 bp):
TCACTTACTTGT
Found at i:14422154 original size:12 final size:12
Alignment explanation
Indices: 14422107--14422157 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
14422097 ACTCGCTTCT
* *
14422107 TTACTTACTCAC
1 TTACTTGCTTAC
14422119 TTACTTG-TTCAC
1 TTACTTGCTT-AC
*
14422131 TTACTTGTTTAC
1 TTACTTGCTTAC
14422143 TTACTTGCTTAC
1 TTACTTGCTTAC
14422155 TTA
1 TTA
14422158 AATAACTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 1 0.03
12 31 0.91
13 2 0.06
ACGTcount: A:0.20, C:0.24, G:0.06, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:14422462 original size:50 final size:50
Alignment explanation
Indices: 14422386--14422578 Score: 215
Period size: 50 Copynumber: 3.7 Consensus size: 50
14422376 TTTTCTGTAC
* * * **
14422386 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
14422436 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * *
14422486 TGCCAACGCCATGTCCCAGACATGGTCTTATATGAGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
14422542 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
14422579 TCTCATTCCC
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 80 0.68
53 2 0.02
56 35 0.30
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:14436706 original size:27 final size:26
Alignment explanation
Indices: 14436688--14436863 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
14436678 GGTATAATAA
14436688 TCATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTA-TTTGG
*
14436715 TCATTTTACCCTATGGCGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTT-GG
** *
14436742 TCATTTTACCCTATGGGGAAATTTTGT
1 TCATTTTACCCTATGGGGGTA-TTTGG
* * *
14436769 TCATTCTACCCTGTGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTT-GG
* * *
14436796 TCATTCTACCCTGTGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTT-GG
** * *
14436823 TCATTTTACTTTATGAGGGTATTTTGA
1 TCATTTTACCCTATGGGGGTA-TTTGG
*
14436850 TCATGTTACCCTAT
1 TCATTTTACCCTAT
14436864 TTTGGGGTCT
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 6 0.05
27 114 0.90
28 6 0.05
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (26 bp):
TCATTTTACCCTATGGGGGTATTTGG
Found at i:14436827 original size:54 final size:53
Alignment explanation
Indices: 14436688--14436863 Score: 201
Period size: 54 Copynumber: 3.3 Consensus size: 53
14436678 GGTATAATAA
14436688 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATG-GCGGTATTTCGG
1 TCATTTTACCCTAT-GGGGTATTTTGGTCATTTTACCCTATGAG-GGTATTTCGG
* * * *
14436742 TCATTTTACCCTATGGGGAAATTTTGTTCATTCTACCCTGTGAGGGTATTTCGG
1 TCATTTTACCCTATGGGG-TATTTTGGTCATTTTACCCTATGAGGGTATTTCGG
* * * ** * *
14436796 TCATTCTACCCTGTGAGGGTATTTCGGTCATTTTACTTTATGAGGGTATTTTGA
1 TCATTTTACCCTATG-GGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGG
*
14436850 TCATGTTACCCTAT
1 TCATTTTACCCTAT
14436864 TTTGGGGTCT
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 4 0.04
54 93 0.92
55 4 0.04
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (53 bp):
TCATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGG
Found at i:14436847 original size:81 final size:80
Alignment explanation
Indices: 14436687--14436863 Score: 214
Period size: 81 Copynumber: 2.2 Consensus size: 80
14436677 GGGTATAATA
* * *
14436687 ATCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGGCGGTATTTCGGTCATTTTACC
1 ATCA-TTTACCCTATGAGGGTATTTCGGTCATTCTACCCTATGGCGGTATTTCGGTCATTTTACC
14436752 CTATGGGGAAATTTTG
65 CTATGGGGAAATTTTG
* * *
14436768 TTCATTCTACCCTGTGAGGGTATTTCGGTCATTCTACCCTGTGAG-GGTATTTCGGTCATTTTAC
1 ATCATT-TACCCTATGAGGGTATTTCGGTCATTCTACCCTATG-GCGGTATTTCGGTCATTTTAC
** *
14436832 TTTATGAGGG-TATTTTG
64 CCTATG-GGGAAATTTTG
14436849 ATCATGTTACCCTAT
1 ATCAT-TTACCCTAT
14436864 TTTGGGGTCT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
80 2 0.02
81 74 0.91
82 5 0.06
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (80 bp):
ATCATTTACCCTATGAGGGTATTTCGGTCATTCTACCCTATGGCGGTATTTCGGTCATTTTACCC
TATGGGGAAATTTTG
Found at i:14443533 original size:17 final size:17
Alignment explanation
Indices: 14443513--14443557 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
14443503 ATTAACAGTC
14443513 AGGTATTGGGCGCGTGG
1 AGGTATTGGGCGCGTGG
14443530 AGGTATTGGGCGCGTGG
1 AGGTATTGGGCGCGTGG
*
14443547 AGGTATCGGGC
1 AGGTATTGGGC
14443558 TCGGGTATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.13, C:0.13, G:0.51, T:0.22
Consensus pattern (17 bp):
AGGTATTGGGCGCGTGG
Found at i:14447662 original size:232 final size:233
Alignment explanation
Indices: 14447248--14447685 Score: 734
Period size: 232 Copynumber: 1.9 Consensus size: 233
14447238 AATCTTAACT
* *
14447248 AAAAAATCTAAAGAAAATGTCTTCGGTTTACTTGTAATTCGATTAAGATGTGTTCACCAAACTTA
1 AAAAAATCTAAAGAAAATGCCTCCGGTTTACTTGTAATTCGATTAAGATGTGTTCACCAAACTTA
* * *
14447313 TCTAATTTGAAACTTAAATTAGAGATTTTTACTTTTAACGGGAACCCTAAACGATACCTAAATAA
66 TCTAATTTGAAACTTAAATTAGAAAATTTTAATTTTAACGGGAACCCTAAACGATACCTAAATAA
* * * *
14447378 TTCTAATAAAATACCTTCAATTCCTAAAATTAATTCTATCTTAGAGTTCT-AAAAAACACTTAGA
131 TTCTAATAAAATACCTTCAAATCCTAAAATTAATTCTATCTTAGAATTCTAAAAAAAAACCTAGA
14447442 AATTACCAATAAGAGAGATATTAAAATCCATCTAAAAA
196 AATTACCAATAAGAGAGATATTAAAATCCATCTAAAAA
14447480 AAAAAATCTAAAGAAAATGCCTCCGGTTTACTTGTAATTCGATTAAGATGTGTTCACCAAACTTA
1 AAAAAATCTAAAGAAAATGCCTCCGGTTTACTTGTAATTCGATTAAGATGTGTTCACCAAACTTA
* *
14447545 TCTAATTTGAAACTTAAATTAGAAAATTTTAATTTTAACGGGAACCCTAAAGGATACCTAAATAG
66 TCTAATTTGAAACTTAAATTAGAAAATTTTAATTTTAACGGGAACCCTAAACGATACCTAAATAA
* * *
14447610 TTCTAGTAAAATACCTTCAAATCTTAAAATTAATTCTATTTTAGAATTCTAAAAAAAAAACCTAG
131 TTCTAATAAAATACCTTCAAATCCTAAAATTAATTCTATCTTAGAATTCT-AAAAAAAAACCTAG
14447675 AAATTACCAAT
195 AAATTACCAAT
14447686 GAATTAAGAG
Statistics
Matches: 190, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
232 168 0.88
234 22 0.12
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.33
Consensus pattern (233 bp):
AAAAAATCTAAAGAAAATGCCTCCGGTTTACTTGTAATTCGATTAAGATGTGTTCACCAAACTTA
TCTAATTTGAAACTTAAATTAGAAAATTTTAATTTTAACGGGAACCCTAAACGATACCTAAATAA
TTCTAATAAAATACCTTCAAATCCTAAAATTAATTCTATCTTAGAATTCTAAAAAAAAACCTAGA
AATTACCAATAAGAGAGATATTAAAATCCATCTAAAAA
Found at i:14448173 original size:26 final size:27
Alignment explanation
Indices: 14448131--14448190 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 27
14448121 CCTAAATCCG
14448131 AATGTAAAAACCTTATGGTTTCATTAA
1 AATGTAAAAACCTTATGGTTTCATTAA
14448158 AATGTAAAAACC-TATGGTTTCATTAA
1 AATGTAAAAACCTTATGGTTTCATTAA
14448184 AATGTAA
1 AATGTAA
14448191 CACCTACTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (27 bp):
AATGTAAAAACCTTATGGTTTCATTAA
Found at i:14456287 original size:50 final size:51
Alignment explanation
Indices: 14456210--14456347 Score: 170
Period size: 50 Copynumber: 2.7 Consensus size: 51
14456200 TGACCATTGT
* * * * *
14456210 CATCCGATACATGTAGTAGCCTACACATAGTACTACACACGTGATCAA-GC
1 CATCCGGTACACGTAGTAGCCTGCACATAGTACTACACACATGACCAAGGC
** * * *
14456260 TTTCTGGTTCACGTAGTAGCTTGCACATAGTACTACACACATGACCAAGGC
1 CATCCGGTACACGTAGTAGCCTGCACATAGTACTACACACATGACCAAGGC
*
14456311 CATCCGGTACACATAGTAGCCTGCACATAGTACTACA
1 CATCCGGTACACGTAGTAGCCTGCACATAGTACTACA
14456348 AATGTGACCA
Statistics
Matches: 71, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 38 0.54
51 33 0.46
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
CATCCGGTACACGTAGTAGCCTGCACATAGTACTACACACATGACCAAGGC
Found at i:14456356 original size:51 final size:50
Alignment explanation
Indices: 14456180--14456357 Score: 176
Period size: 51 Copynumber: 3.5 Consensus size: 50
14456170 TTCGGTGGTT
* * * * * * *
14456180 TGCACATAGTACCACCCATGTGACCATTGTCATCCGATACATGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCA-AGCCATCCGGTACACGTAGTAGCC
* * ** * * *
14456231 TACACATAGTACTACACACGTGATCAAGCTTTCTGGTTCACGTAGTAGCT
1 TGCACATAGTACTACACACGTGACCAAGCCATCCGGTACACGTAGTAGCC
* *
14456281 TGCACATAGTACTACACACATGACCAAGGCCATCCGGTACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACCAA-GCCATCCGGTACACGTAGTAGCC
* *
14456332 TGCACATAGTACTACAAATGTGACCA
1 TGCACATAGTACTACACACGTGACCA
14456358 TTATTTATCG
Statistics
Matches: 100, Mismatches: 26, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 39 0.39
51 61 0.61
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TGCACATAGTACTACACACGTGACCAAGCCATCCGGTACACGTAGTAGCC
Found at i:14469242 original size:24 final size:24
Alignment explanation
Indices: 14469193--14469239 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14469183 ACTGGTCATA
*
14469193 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
14469217 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
14469240 GGAATTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:14470287 original size:27 final size:27
Alignment explanation
Indices: 14470257--14470456 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
14470247 CCCTAAAATA
* * *
14470257 GGTAAAATAACCGAAATACCCCCACAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
14470284 GGTAAAATGATCGAAATACCTCC-ATAG
1 GGTAAAATGACCGAAATACC-CCTATAG
* * *
14470311 GGTAGAATGACCAAAATAGCTCC-ATAG
1 GGTAAAATGACCGAAATA-CCCCTATAG
*
14470338 GGTAAAATGACCGAAATACCCCTATGG
1 GGTAAAATGACCGAAATACCCCTATAG
*
14470365 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
14470392 GGTAGAATGATCGAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCCTATAG
*
14470419 GGTAAAATGACCGAAATACCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
14470446 GGTAAAATGAC
1 GGTAAAATGAC
14470457 TATTATACCC
Statistics
Matches: 151, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.02
27 145 0.96
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:14470469 original size:81 final size:81
Alignment explanation
Indices: 14470256--14470455 Score: 287
Period size: 81 Copynumber: 2.5 Consensus size: 81
14470246 ACCCTAAAAT
* * *
14470256 AGGTAAAATAACCGAAATACCCCCACAGGGTAAAATGATCGAAATACCTCC-ATAGGGTAGAATG
1 AGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACC-CCTATAGGGTAGAATG
*
14470320 ACCAAAATAGCTCCATA
65 ACCAAAATAGCCCCATA
* *
14470337 GGGTAAAATGACCGAAATACCCCTATGGGGTAAAATGATCGAAATACCCCTATAGGGTAGAATGA
1 AGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCTATAGGGTAGAATGA
* *
14470402 TCGAAATA-CCCCTATA
66 CCAAAATAGCCCC-ATA
*
14470418 AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGA
1 AGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGA
14470456 CTATTATACC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 5 0.05
81 101 0.95
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (81 bp):
AGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCTATAGGGTAGAATGA
CCAAAATAGCCCCATA
Found at i:14470481 original size:54 final size:54
Alignment explanation
Indices: 14470256--14470483 Score: 221
Period size: 54 Copynumber: 4.2 Consensus size: 54
14470246 ACCCTAAAAT
* * * * *
14470256 AGGTAAAATAACCGAAATACCCCCACAGGGTAAAATGATCGAAATACCTCCATA-G
1 AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGACCGAAATACC-CC-TAGG
* * * *
14470311 -GGTAGAATGACCAAAATAGCTCCATAGGGTAAAATGACCGAAATACCCCTATGG
1 AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGACCGAAATACCCCTA-GG
* * * * **
14470365 -GGTAAAATGATCGAAATACCCCTATAGGGTAGAATGATCGAAATACCCCTATA
1 AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGACCGAAATACCCCTAGG
* *
14470418 AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGA-CTATTATACCCCTAGG
1 AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGACCGA-AATACCCCTAGG
* *
14470472 AGATGAAATGAC
1 AGGTAAAATGAC
14470484 TGTTATGGCC
Statistics
Matches: 143, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
52 2 0.01
53 4 0.03
54 137 0.96
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (54 bp):
AGGTAAAATGACCGAAATACCTCTATAGGGTAAAATGACCGAAATACCCCTAGG
Found at i:14472897 original size:15 final size:15
Alignment explanation
Indices: 14472855--14472899 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
14472845 CGTCAGTCTA
14472855 CGAGCTCATTAGTCTG
1 CGAGCTCATTAGT-TG
* **
14472871 CAAGCTTGTTAGTTG
1 CGAGCTCATTAGTTG
14472886 CGAGCTCATTAGTT
1 CGAGCTCATTAGTT
14472900 TACCTTAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (15 bp):
CGAGCTCATTAGTTG
Found at i:14477449 original size:129 final size:130
Alignment explanation
Indices: 14477219--14477479 Score: 499
Period size: 129 Copynumber: 2.0 Consensus size: 130
14477209 AACCCTCAGC
14477219 TACCTTAGATGATTAAACATGCACTGATTAAGTATTGTGTCCATTAATTAAAATTTCAACATGAT
1 TACCTTAGATGATTAAACATGCACTGATTAAGTATTGTGTCCATTAATTAAAATTTCAACATGAT
14477284 TTAATAATTAATTCATTAGTTACCTTACAACGATAATGCAAGATT-ATTTAAATCAT-GTTTTAC
66 TTAATAATTAATTCATTAGTTACCTTACAACGATAATGCAAGATTAATTT-AATCATGGTTTTAC
14477347 T
130 T
14477348 TACCTTAGATGATTAAACATGCACTGATTAAGTATTGTGTCCATTAATTAAAATTTCAACATGAT
1 TACCTTAGATGATTAAACATGCACTGATTAAGTATTGTGTCCATTAATTAAAATTTCAACATGAT
14477413 TTAATAATTAATTCATTAGTTACCTTACAACGATAATGCAAGATTAATTTAATCATGGTTTTACT
66 TTAATAATTAATTCATTAGTTACCTTACAACGATAATGCAAGATTAATTTAATCATGGTTTTACT
14477478 TA
1 TA
14477480 ATTAAACAAT
Statistics
Matches: 130, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
129 116 0.89
130 14 0.11
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.39
Consensus pattern (130 bp):
TACCTTAGATGATTAAACATGCACTGATTAAGTATTGTGTCCATTAATTAAAATTTCAACATGAT
TTAATAATTAATTCATTAGTTACCTTACAACGATAATGCAAGATTAATTTAATCATGGTTTTACT
Found at i:14477587 original size:20 final size:18
Alignment explanation
Indices: 14477562--14477598 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
14477552 ACCTAACACA
14477562 AATTAAATTTAAATCATATT
1 AATTAAA-TTAAA-CATATT
14477582 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
14477599 CAACAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:14481838 original size:35 final size:35
Alignment explanation
Indices: 14481791--14481861 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
14481781 TTTGAAGGGT
*
14481791 GTTGTGAAATCTTTCGGGATTTCAAGGCTTCTTAG
1 GTTGTGAAATCTTTCAGGATTTCAAGGCTTCTTAG
*
14481826 GTTGTGATATCTTTCAGGATTTCAAGGCTTCTTAG
1 GTTGTGAAATCTTTCAGGATTTCAAGGCTTCTTAG
14481861 G
1 G
14481862 ACTTATCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (35 bp):
GTTGTGAAATCTTTCAGGATTTCAAGGCTTCTTAG
Found at i:14492072 original size:124 final size:122
Alignment explanation
Indices: 14491823--14492072 Score: 342
Period size: 124 Copynumber: 2.0 Consensus size: 122
14491813 TCCTAATTAT
* *
14491823 ATATGTTCAATCGATCCTTCTGCTAACTTGAGATAACCAAAATTGCATGTAGAACAAATAGATAG
1 ATATGTCCAATCGATCCTTCTGCTAACTTGAGATAACCAAAATTGCATGTAGAACAAATAGAGAG
* *
14491888 AATTGAATAAAAATGAAGTAAGAGAAATAGATCACACGTATCATTATTCATAGTATTAA
66 AAATGAATAAAAATGAAGTAAGAGAAATAGATCACACGTATCATTATCCATAG--TTAA
* * * *
14491947 ATATGTCCAATCGGTTCC-TCTGCTAGCTTGAGATAACTAGAATTGCATGTAGAACAAATAGAGA
1 ATATGTCCAATC-GATCCTTCTGCTAACTTGAGATAACCAAAATTGCATGTAGAACAAATAGAGA
* *
14492011 GAAATGAATGAAAACAATGAAGTAAGATAAATAGATCACATGTATCATTATCCATAG-TAA
65 GAAATGAAT--AAA-AATGAAGTAAGAGAAATAGATCACACGTATCATTATCCATAGTTAA
14492071 AT
1 AT
14492073 GCATTTTCTT
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
124 66 0.59
125 4 0.04
126 3 0.03
127 39 0.35
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (122 bp):
ATATGTCCAATCGATCCTTCTGCTAACTTGAGATAACCAAAATTGCATGTAGAACAAATAGAGAG
AAATGAATAAAAATGAAGTAAGAGAAATAGATCACACGTATCATTATCCATAGTTAA
Found at i:14499220 original size:78 final size:78
Alignment explanation
Indices: 14499091--14499247 Score: 244
Period size: 78 Copynumber: 2.0 Consensus size: 78
14499081 TAATCATAAG
*
14499091 GTGTGACCCTGTAGATTCTTGTAACGTTGTTAGTAATACTAGAACATTTTTAATGTTACAAGCAA
1 GTGTGACCCTGTAGATTCTTGTAACGTTGTTAGTAATACTAGAACATTTTTAATGTTACAAGAAA
*
14499156 TAAGTGGCATCTA
66 TAAGCGGCATCTA
* * *
14499169 GTGTGACCCTGTAGGTTCTTGTAATGTT-TGTAGTAATACTAGAACATTTTTAATGTTATAAGAA
1 GTGTGACCCTGTAGATTCTTGTAACGTTGT-TAGTAATACTAGAACATTTTTAATGTTACAAGAA
*
14499233 ATGAGCGGCATCTA
65 ATAAGCGGCATCTA
14499247 G
1 G
14499248 CAACGCATCA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
77 1 0.01
78 71 0.99
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (78 bp):
GTGTGACCCTGTAGATTCTTGTAACGTTGTTAGTAATACTAGAACATTTTTAATGTTACAAGAAA
TAAGCGGCATCTA
Found at i:14501831 original size:75 final size:74
Alignment explanation
Indices: 14501708--14501855 Score: 215
Period size: 75 Copynumber: 2.0 Consensus size: 74
14501698 TTTGGGCGAA
*
14501708 TCAAGAATAAGGCATGCCCACACCTTATTATTGCAGAACATCAGGAAGTACAAAATTTTTGTTCA
1 TCAAGAATAAGGCATGCCCACACCTTATTATTGCAGAACATCAAGAAGTACAAAATTTTT-TTCA
14501773 CAAAAGAAAT
65 CAAAAGAAAT
** * * * *
14501783 TCAAGAATAAGGCATGCCCATGCCTTATTATTGTAGAACATTAAGAAGTACAACATTTTTTTCAT
1 TCAAGAATAAGGCATGCCCACACCTTATTATTGCAGAACATCAAGAAGTACAAAATTTTTTTCAC
*
14501848 AGAAGAAA
66 AAAAGAAA
14501856 CTCTAAAACA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 11 0.17
75 54 0.83
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (74 bp):
TCAAGAATAAGGCATGCCCACACCTTATTATTGCAGAACATCAAGAAGTACAAAATTTTTTTCAC
AAAAGAAAT
Found at i:14506027 original size:17 final size:17
Alignment explanation
Indices: 14506005--14506039 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14505995 CAAGATTTAA
14506005 TGAAAGAAACTTGAGTT
1 TGAAAGAAACTTGAGTT
14506022 TGAAAGAAACTTGAGTT
1 TGAAAGAAACTTGAGTT
14506039 T
1 T
14506040 TCTTTTGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (17 bp):
TGAAAGAAACTTGAGTT
Found at i:14512323 original size:9 final size:9
Alignment explanation
Indices: 14512309--14512339 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14512299 GTTAAACGAA
14512309 TCGAGTTAT
1 TCGAGTTAT
*
14512318 TCGAGTTAA
1 TCGAGTTAT
14512327 TCGAGTTAT
1 TCGAGTTAT
14512336 TCGA
1 TCGA
14512340 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:14514118 original size:18 final size:17
Alignment explanation
Indices: 14514085--14514117 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14514075 CATTTTTCTT
14514085 ATAATTAATTAATTTTA
1 ATAATTAATTAATTTTA
14514102 ATAATGTAATT-ATTTT
1 ATAAT-TAATTAATTTT
14514118 TTTTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATAATTAATTAATTTTA
Found at i:14514163 original size:2 final size:2
Alignment explanation
Indices: 14514158--14514186 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14514148 TTTTTAAATC
14514158 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14514187 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14519976 original size:18 final size:19
Alignment explanation
Indices: 14519953--14519988 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14519943 AAAAATTAGA
14519953 TTAGGGTT-AGGGTTTTTG
1 TTAGGGTTAAGGGTTTTTG
14519971 TTAGGGTTAAGGGTTTTT
1 TTAGGGTTAAGGGTTTTT
14519989 AAGGAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (19 bp):
TTAGGGTTAAGGGTTTTTG
Found at i:14520379 original size:230 final size:230
Alignment explanation
Indices: 14519976--14520481 Score: 976
Period size: 230 Copynumber: 2.2 Consensus size: 230
14519966 TTTTGTTAGG
14519976 GTTAAGGGTTTTTAAGGAAAAATTAAATAAGTTAGGGTTTAGAGTTTAGGGTTTGTCAATTAAAT
1 GTTAAGGGTTTTTAAGGAAAAATTAAATAAGTTAGGGTTTAGAGTTTAGGGTTTGTCAATTAAAT
14520041 TATTTAAAAAATTTTCAAAATTGGATTAGTTTTCGTGTTTATTATTTTTTAAGAAAAAATCAATT
66 TATTTAAAAAATTTTCAAAATTGGATTAGTTTTCGTGTTTATTATTTTTTAAGAAAAAATCAATT
14520106 AAATTAGTGTTTAAGGTTACTTGTGTAATTTAATTAAAAAATTTTAAAAATTAGATTAGGGTTAG
131 AAATTAGTGTTTAAGGTTACTTGTGTAATTTAATTAAAAAATTTTAAAAATTAGATTAGGGTTAG
14520171 GGTTAGGGTTTTTGTTAGGGTTTTAATGTTTTTAA
196 GGTTAGGGTTTTTGTTAGGGTTTTAATGTTTTTAA
*
14520206 GTTAAGGGTTTTTAAGGAAAAATCAAATAAGTTAGGGTTTAGAGTTTAGGGTTTGTCAATTAAAT
1 GTTAAGGGTTTTTAAGGAAAAATTAAATAAGTTAGGGTTTAGAGTTTAGGGTTTGTCAATTAAAT
14520271 TATTTAAAAAATTTTCAAAATTGGATTAGTTTTCGTGTTTATTATTTTTTAAGAAAAAATCAATT
66 TATTTAAAAAATTTTCAAAATTGGATTAGTTTTCGTGTTTATTATTTTTTAAGAAAAAATCAATT
14520336 AAATTAGTGTTTAAGGTTACTTGTGTAATTTAATTAAAAAATTTTAAAAATTAGATTAGGGTTAG
131 AAATTAGTGTTTAAGGTTACTTGTGTAATTTAATTAAAAAATTTTAAAAATTAGATTAGGGTTAG
**
14520401 GGTTAGGGTTTTTGTTAGGGTTTTGGTGTTTTTAA
196 GGTTAGGGTTTTTGTTAGGGTTTTAATGTTTTTAA
*
14520436 GTTAAGGATTTTTAAGGAAAAATTAAATAAGTTAGGGTTTAGAGTT
1 GTTAAGGGTTTTTAAGGAAAAATTAAATAAGTTAGGGTTTAGAGTT
14520482 ATTTCCAAAT
Statistics
Matches: 271, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
230 271 1.00
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (230 bp):
GTTAAGGGTTTTTAAGGAAAAATTAAATAAGTTAGGGTTTAGAGTTTAGGGTTTGTCAATTAAAT
TATTTAAAAAATTTTCAAAATTGGATTAGTTTTCGTGTTTATTATTTTTTAAGAAAAAATCAATT
AAATTAGTGTTTAAGGTTACTTGTGTAATTTAATTAAAAAATTTTAAAAATTAGATTAGGGTTAG
GGTTAGGGTTTTTGTTAGGGTTTTAATGTTTTTAA
Found at i:14522560 original size:14 final size:14
Alignment explanation
Indices: 14522530--14522575 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
14522520 TATTAGTTAT
14522530 ATACATAATACAT-A
1 ATACATAATA-ATAA
14522544 ATACATAATAATAA
1 ATACATAATAATAA
*
14522558 ATAC-TAAATACTAA
1 ATACAT-AATAATAA
14522572 ATAC
1 ATAC
14522576 CAATCAGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 3 0.10
14 26 0.90
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (14 bp):
ATACATAATAATAA
Found at i:14523754 original size:11 final size:11
Alignment explanation
Indices: 14523735--14523830 Score: 76
Period size: 11 Copynumber: 9.0 Consensus size: 11
14523725 GGATTTAAGA
14523735 GAAATTTGAGAG
1 GAAA-TTGAGAG
14523747 GAAATTGAGAG
1 GAAATTGAGAG
* *
14523758 TAAATTGAGAT
1 GAAATTGAGAG
*
14523769 TAAA-T-AG-G
1 GAAATTGAGAG
*
14523777 G-ATTTGAGA-
1 GAAATTGAGAG
*
14523786 GAAATTTAGAAG
1 GAAATTGAG-AG
14523798 GAAATTGAGAG
1 GAAATTGAGAG
*
14523809 CAAATTGAGAG
1 GAAATTGAGAG
*
14523820 GACATTGAGAG
1 GAAATTGAGAG
14523831 AATAATAGAG
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 5 0.07
10 6 0.09
11 42 0.63
12 12 0.18
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.24
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:14523781 original size:51 final size:51
Alignment explanation
Indices: 14523719--14523818 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
14523709 AATAATTAAA
* *
14523719 AAATATGGATTTAAGAGAAATTT-GAGAGGAAATTGAGAGTAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGCAAATTGAGATT
*
14523770 AAATAGGGATTTGAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGA
14523819 GGACATTGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 43 0.96
52 2 0.04
ACGTcount: A:0.46, C:0.01, G:0.27, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGATT
Found at i:14525156 original size:31 final size:30
Alignment explanation
Indices: 14525100--14525158 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
14525090 AAATATTTAT
* **
14525100 AAATTATAATATATATTTTTTATTAAAATA
1 AAATTATAATATAAATAGTTTATTAAAATA
14525130 AAATTATAATATTAAATAGTTTATTAAAA
1 AAATTATAATA-TAAATAGTTTATTAAAA
14525159 CAATAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (30 bp):
AAATTATAATATAAATAGTTTATTAAAATA
Found at i:14527066 original size:13 final size:13
Alignment explanation
Indices: 14527048--14527078 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14527038 TGGAAGATGG
*
14527048 ATAAATAATTAAA
1 ATAAATAAATAAA
14527061 ATAAATAAATAAA
1 ATAAATAAATAAA
14527074 ATAAA
1 ATAAA
14527079 ATATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
ATAAATAAATAAA
Found at i:14533003 original size:34 final size:33
Alignment explanation
Indices: 14532964--14533219 Score: 100
Period size: 34 Copynumber: 7.4 Consensus size: 33
14532954 ACGCCCAGCG
* *
14532964 CTAGTTGGATAACCGATAATAGTTGTGCCTTACA
1 CTAGTTGAATAACCGAAAATAGTTGTGCC-TACA
* * *
14532998 CTAGTTGAATAAATCGACAAATAATTGTGCCTAGCG
1 CTAGTTGAAT-AACCGA-AAATAGTTGTGCCTA-CA
* *
14533034 CTAGTCGAATAACC-AACAATAGTTGTGCCCTGCA
1 CTAGTTGAATAACCGAA-AATAGTTGTG-CCTACA
* * * * * **
14533068 CTAGTCGAATAAATCGACAAATAATTGCGCCCAGTG
1 CTAGTTGAAT-AACCGA-AAATAGTTGTGCCTA-CA
* * * * *
14533104 CTAGTCGGATAATCGACAATAGTTGTGACCTGCA
1 CTAGTTGAATAACCGAAAATAGTTGTG-CCTACA
* * * * ** *
14533138 CTAGTCGAGTAAATCGACAAATAATTGCACCCAGCA
1 CTAGTTGAAT-AACCGA-AAATAGTTGTGCCTA-CA
** * *
14533174 CTAGACGAATAACCGACAATAGTTGTGACCTGCA
1 CTAGTTGAATAACCGAAAATAGTTGTG-CCTACA
*
14533208 CTAGTCGAATAA
1 CTAGTTGAATAA
14533220 ATCGACAAAT
Statistics
Matches: 165, Mismatches: 43, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
33 1 0.01
34 66 0.40
35 41 0.25
36 56 0.34
37 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (33 bp):
CTAGTTGAATAACCGAAAATAGTTGTGCCTACA
Found at i:14533046 original size:70 final size:70
Alignment explanation
Indices: 14532957--14533264 Score: 438
Period size: 70 Copynumber: 4.4 Consensus size: 70
14532947 AAGTTTTACG
* * * *
14532957 CCCAGCGCTAGTTGGATAACCGATAATAGTTGTG-CCTTACACTAGTTGAATAAATCGACAAATA
1 CCCAGCGCTAGTCGGATAACCGACAATAGTTGTGACC-TGCACTAGTCGAATAAATCGACAAATA
**
14533021 ATTGTG
65 ATTGCA
* * * *
14533027 CCTAGCGCTAGTCGAATAACCAACAATAGTTGTGCCCTGCACTAGTCGAATAAATCGACAAATAA
1 CCCAGCGCTAGTCGGATAACCGACAATAGTTGTGACCTGCACTAGTCGAATAAATCGACAAATAA
*
14533092 TTGCG
66 TTGCA
* * *
14533097 CCCAGTGCTAGTCGGATAATCGACAATAGTTGTGACCTGCACTAGTCGAGTAAATCGACAAATAA
1 CCCAGCGCTAGTCGGATAACCGACAATAGTTGTGACCTGCACTAGTCGAATAAATCGACAAATAA
14533162 TTGCA
66 TTGCA
* * *
14533167 CCCAGCACTAGACGAATAACCGACAATAGTTGTGACCTGCACTAGTCGAATAAATCGACAAATAA
1 CCCAGCGCTAGTCGGATAACCGACAATAGTTGTGACCTGCACTAGTCGAATAAATCGACAAATAA
14533232 TTGCA
66 TTGCA
*
14533237 CCCAGCTCTAGTCGGATAACCGACAATA
1 CCCAGCGCTAGTCGGATAACCGACAATA
14533265 TCAATTACAC
Statistics
Matches: 212, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
70 210 0.99
71 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (70 bp):
CCCAGCGCTAGTCGGATAACCGACAATAGTTGTGACCTGCACTAGTCGAATAAATCGACAAATAA
TTGCA
Found at i:14533249 original size:36 final size:36
Alignment explanation
Indices: 14532996--14533255 Score: 212
Period size: 36 Copynumber: 7.4 Consensus size: 36
14532986 TTGTGCCTTA
* ** *
14532996 CACTAGTTGAATAAATCGACAAATAATTGTGCCTAG
1 CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
* * * * ** *
14533032 CGCTAGTCGAAT-AACCAAC-AATAGTTGTGCCCTG
1 CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
*
14533066 CACTAGTCGAATAAATCGACAAATAATTGCGCCCAG
1 CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
** * * * *
14533102 TGCTAGTCGGAT-AATCGAC-AATAGTTGTGA-CCTG
1 CACTAGTCGAATAAATCGACAAATAATTG-CACCCAG
*
14533136 CACTAGTCGAGTAAATCGACAAATAATTGCACCCAG
1 CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
* * * * *
14533172 CACTAGACGAAT-AACCGAC-AATAGTTGTGA-CCTG
1 CACTAGTCGAATAAATCGACAAATAATTG-CACCCAG
14533206 CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
1 CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
* *
14533242 CTCTAGTCGGATAA
1 CACTAGTCGAATAA
14533256 CCGACAATAT
Statistics
Matches: 174, Mismatches: 40, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
34 62 0.36
35 39 0.22
36 73 0.42
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (36 bp):
CACTAGTCGAATAAATCGACAAATAATTGCACCCAG
Found at i:14541901 original size:163 final size:157
Alignment explanation
Indices: 14541562--14541908 Score: 427
Period size: 163 Copynumber: 2.2 Consensus size: 157
14541552 ACTTGGTTTA
* *
14541562 CTTGAGGATAAGCAAAAAG-TTAGGTGTAGGCGAGTTTAGGTGTGAGGTTCTTATTTACATCCAT
1 CTTGAGGACAAGCAACAAGTTTA-GTGTAGGCGAGTTTAGGTGTGAGGTTCTTATTTACATCCAT
* * * * *
14541626 CTTCACTAACTCTTGTTTAAAGAAAGAAATTAAGTCATTTTCGTGTTAAATTTTTTTTATTTTAT
65 CTTCAATAACTCTTGTTTAAAGAAAGAAATTAAGTCAATTTCCTGTAAAATTTTTTTTATATTAT
14541691 TCTCTTTTTCTAATATAAATTTTGGTGG
130 TCTCTTTTTCTAATATAAATTTTGGTGG
**
14541719 CTTGAAAACAAGCAACAAGTTTAGTGTAAGG-GAGGGTTTAGGTGTGAGGTTCTTATTTACATCC
1 CTTGAGGACAAGCAACAAGTTTAGTGT-AGGCGA--GTTTAGGTGTGAGGTTCTTATTTACATCC
*
14541783 ATCTTCAATAACTCTAGCTTGTATTCAA-AAAGAAATTAAGTCAATTTCCTGTAAAATTTTTATT
63 ATCTTCAATAA--CT--CTTGT-TTAAAGAAAGAAATTAAGTCAATTTCCTGTAAAATTTTT-TT
* *
14541847 T-TATT-TTCTCTTTTT-TAATATATATGTTTTGGTTG
122 TATATTATTCTCTTTTTCTAATATA-A-ATTTTGGTGG
*
14541882 CTTGAGGACAAGCAACAAGTTAAGTGT
1 CTTGAGGACAAGCAACAAGTTTAGTGT
14541909 GGGGGAGTGA
Statistics
Matches: 163, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
157 21 0.13
158 6 0.04
159 39 0.24
161 9 0.06
162 11 0.07
163 70 0.43
164 7 0.04
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.41
Consensus pattern (157 bp):
CTTGAGGACAAGCAACAAGTTTAGTGTAGGCGAGTTTAGGTGTGAGGTTCTTATTTACATCCATC
TTCAATAACTCTTGTTTAAAGAAAGAAATTAAGTCAATTTCCTGTAAAATTTTTTTTATATTATT
CTCTTTTTCTAATATAAATTTTGGTGG
Found at i:14554749 original size:27 final size:27
Alignment explanation
Indices: 14554719--14554784 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
14554709 CATCCAAATG
*
14554719 TATTTAAATGTTAATGTGGTACTATTT
1 TATTTAAATGTTAATGTGATACTATTT
14554746 TATTTAAATGTTAATGTGATACTATTT
1 TATTTAAATGTTAATGTGATACTATTT
*
14554773 TATCTTATATGT
1 TAT-TTAAATGT
14554785 CAGTAAACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 29 0.81
28 7 0.19
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (27 bp):
TATTTAAATGTTAATGTGATACTATTT
Found at i:14562768 original size:44 final size:45
Alignment explanation
Indices: 14562703--14562793 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
14562693 ACCTCTATTC
* * *
14562703 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
14562747 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
14562792 CA
1 CA
14562794 GCGAACCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:14562801 original size:45 final size:44
Alignment explanation
Indices: 14562720--14562804 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 44
14562710 CCAAACACAA
* * * *
14562720 GATTACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTG
1 GATTACTATTACACCTCTAATCCAATACATGCAACCAAACAGTG
14562764 GATTAGCTATTACACCTCTAATCCAATACA-GCGAACCAAAC
1 GATTA-CTATTACACCTCTAATCCAATACATGC-AACCAAAC
14562805 GCACCCTAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
44 6 0.17
45 29 0.83
ACGTcount: A:0.35, C:0.28, G:0.09, T:0.27
Consensus pattern (44 bp):
GATTACTATTACACCTCTAATCCAATACATGCAACCAAACAGTG
Found at i:14563860 original size:10 final size:9
Alignment explanation
Indices: 14563842--14563866 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14563832 CTCTATCAGT
14563842 AATAAAAAA
1 AATAAAAAA
14563851 AATAAAAAA
1 AATAAAAAA
14563860 AATAAAA
1 AATAAAA
14563867 CTACAAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:14563980 original size:7 final size:7
Alignment explanation
Indices: 14563968--14563994 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14563958 TATATGGCAA
14563968 AAGAATG
1 AAGAATG
14563975 AAGAATG
1 AAGAATG
14563982 AAGAATG
1 AAGAATG
14563989 AAGAAT
1 AAGAAT
14563995 AAAGTGGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (7 bp):
AAGAATG
Found at i:14573557 original size:38 final size:39
Alignment explanation
Indices: 14573485--14573562 Score: 115
Period size: 38 Copynumber: 2.0 Consensus size: 39
14573475 ATAGAATTAT
14573485 ACATTTACAAAAAGTGGAAAACGTTTTTGAAATTAAAATA
1 ACATTTACAAAAAGT-GAAAACGTTTTTGAAATTAAAATA
*
14573525 ACATTTAC-AAAAGT-AAAACGTTTTTTGAAATTAGAATA
1 ACATTTACAAAAAGTGAAAACG-TTTTTGAAATTAAAATA
14573563 TATATATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
37 6 0.17
38 16 0.44
39 6 0.17
40 8 0.22
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.32
Consensus pattern (39 bp):
ACATTTACAAAAAGTGAAAACGTTTTTGAAATTAAAATA
Found at i:14574529 original size:17 final size:17
Alignment explanation
Indices: 14574507--14574540 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14574497 GCGCAAGCCA
*
14574507 TGGCGCGCGTGGAGGAG
1 TGGCGCACGTGGAGGAG
14574524 TGGCGCACGTGGAGGAG
1 TGGCGCACGTGGAGGAG
14574541 ATTGGCTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.56, T:0.12
Consensus pattern (17 bp):
TGGCGCACGTGGAGGAG
Found at i:14575617 original size:17 final size:16
Alignment explanation
Indices: 14575581--14575622 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
14575571 GAATTTAGAA
*
14575581 GAATTTTTGAATTGGT
1 GAATTTTTGAATTAGT
*
14575597 GAATTTTGTGATTTAGT
1 GAATTTT-TGAATTAGT
14575614 GAATTTTTG
1 GAATTTTTG
14575623 CGATTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (16 bp):
GAATTTTTGAATTAGT
Found at i:14575627 original size:18 final size:17
Alignment explanation
Indices: 14575595--14575629 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14575585 TTTTGAATTG
*
14575595 GTGAATTTTGTGATTTA
1 GTGAATTTTGCGATTTA
14575612 GTGAATTTTTGCGATTTA
1 GTGAA-TTTTGCGATTTA
14575630 AAAAGAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51
Consensus pattern (17 bp):
GTGAATTTTGCGATTTA
Found at i:14576922 original size:46 final size:46
Alignment explanation
Indices: 14576855--14577039 Score: 307
Period size: 46 Copynumber: 4.0 Consensus size: 46
14576845 CATGGCGAAG
14576855 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
*
14576901 TGTGAAAAGTAGGTATGGTGTTTTGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
14576947 TATGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACTATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
** * *
14576993 TGTGAAAAGTAGGTATGGTAATTCCGTGAAGAAAGCCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
14577039 T
1 T
14577040 ATAGCAATGT
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:14586442 original size:41 final size:41
Alignment explanation
Indices: 14586398--14586557 Score: 275
Period size: 41 Copynumber: 3.9 Consensus size: 41
14586388 CAGGTTTATT
* *
14586398 GCCGGTGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAT
1 GCCGATGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAC
14586439 GCCGATGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAC
1 GCCGATGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAC
*
14586480 GCTGATGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAC
1 GCCGATGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAC
* *
14586521 GCCGGTGAAACATTTCAGACTTTATGTCTAGCAGGCT
1 GCCGATGAAACATTTCAGACTTTAAGTCTAGCAGGCT
14586558 AAGTGCCAGT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (41 bp):
GCCGATGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGAC
Found at i:14587961 original size:53 final size:54
Alignment explanation
Indices: 14587879--14587988 Score: 150
Period size: 53 Copynumber: 2.1 Consensus size: 54
14587869 TCGTGGCACT
* * * *
14587879 AAAGAATACCATATCGTGTAAGACCGTAACTGATGAGTTATGGCATCATAT-GG
1 AAAGAAGACCATATCATGTAAGACAGTAACTGATGAGTTATGGCATAATATAGG
* * *
14587932 AAAGAAGACCATATCATGTAAGATAGTAACTGGTGGGTTATGGCATAATATAGG
1 AAAGAAGACCATATCATGTAAGACAGTAACTGATGAGTTATGGCATAATATAGG
14587986 AAA
1 AAA
14587989 ATTTAAGAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 44 0.90
54 5 0.10
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (54 bp):
AAAGAAGACCATATCATGTAAGACAGTAACTGATGAGTTATGGCATAATATAGG
Found at i:14590010 original size:33 final size:33
Alignment explanation
Indices: 14589893--14590003 Score: 177
Period size: 33 Copynumber: 3.4 Consensus size: 33
14589883 ATATTATCTG
*
14589893 TTGGTGTGCTGGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
* *
14589926 CTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
* *
14589959 TTGGTGTGTTGGTTGGATTAGCTCTTCTGAGCA
1 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
14589992 TTGGTGTGCTGG
1 TTGGTGTGCTGG
14590004 AGGGATTGTC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.14, C:0.13, G:0.35, T:0.39
Consensus pattern (33 bp):
TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
Found at i:14593724 original size:51 final size:49
Alignment explanation
Indices: 14593601--14593740 Score: 167
Period size: 51 Copynumber: 2.8 Consensus size: 49
14593591 TGAAAGTGAA
*
14593601 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTTGCGTACCAGAT
1 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTAC-TACGTACCAGAT
* * *
14593651 AGCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGAT
1 AG-TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTAC--GTACCAGAT
* *
14593702 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTA
14593741 TGTGAACCGG
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
49 3 0.04
50 33 0.43
51 40 0.52
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTACCAGAT
Found at i:14593818 original size:46 final size:44
Alignment explanation
Indices: 14593745--14593844 Score: 114
Period size: 46 Copynumber: 2.2 Consensus size: 44
14593735 CTACTATGTG
*
14593745 AACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCC
1 AACCGGTATCATTAATTACAAGGTGGTTGCTATGTGCTGAATCC
* * *
14593788 AACCGGATATCATTGATTACAATGGGTGGTTGTTGTGTGCTGAATCC
1 AACCGG-TATCATTAATTACAA--GGTGGTTGCTATGTGCTGAATCC
14593835 -ACCGTGTATC
1 AACCG-GTATC
14593845 TGTTACTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 6 0.12
44 13 0.27
46 24 0.50
47 5 0.10
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (44 bp):
AACCGGTATCATTAATTACAAGGTGGTTGCTATGTGCTGAATCC
Found at i:14594014 original size:37 final size:38
Alignment explanation
Indices: 14593945--14594017 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
14593935 ATGTATGGAA
* **
14593945 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
14593983 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
14594018 ATTATAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:14603799 original size:18 final size:18
Alignment explanation
Indices: 14603776--14603812 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
14603766 ACTTTTGCAT
*
14603776 AGAGCTCAAATAAAATCA
1 AGAGCTCAAAAAAAATCA
14603794 AGAGCTCAAAAAAAATCA
1 AGAGCTCAAAAAAAATCA
14603812 A
1 A
14603813 CCCCCCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.16, G:0.11, T:0.14
Consensus pattern (18 bp):
AGAGCTCAAAAAAAATCA
Found at i:14604467 original size:17 final size:17
Alignment explanation
Indices: 14604437--14604470 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14604427 TATTAATATT
**
14604437 AATATTAATTAAAAATA
1 AATATTAAAAAAAAATA
14604454 AATATTAAAAAAAAATA
1 AATATTAAAAAAAAATA
14604471 TTTTCCCTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATATTAAAAAAAAATA
Found at i:14615657 original size:12 final size:12
Alignment explanation
Indices: 14615637--14615696 Score: 70
Period size: 12 Copynumber: 5.1 Consensus size: 12
14615627 TTTTTTTAGT
14615637 TTAT-TTTATTA
1 TTATATTTATTA
* *
14615648 ATATAGTTATTA
1 TTATATTTATTA
*
14615660 TTATTTTTATTA
1 TTATATTTATTA
14615672 TTACTA-TTATTA
1 TTA-TATTTATTA
14615684 TTATATTTATTA
1 TTATATTTATTA
14615696 T
1 T
14615697 ACTTACATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 5 0.12
12 34 0.85
13 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (12 bp):
TTATATTTATTA
Found at i:14615669 original size:6 final size:6
Alignment explanation
Indices: 14615637--14615696 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
14615627 TTTTTTTAGT
* * *
14615637 TTATT- TTATTA ATA-TA GTTATTA TTATTT TTATTA TTACTA TTATTA
1 TTATTA TTATTA TTATTA -TTATTA TTATTA TTATTA TTATTA TTATTA
14615684 TTA-TA TTTATTA T
1 TTATTA -TTATTA T
14615697 ACTTACATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
5 9 0.20
6 31 0.70
7 4 0.09
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (6 bp):
TTATTA
Found at i:14615671 original size:9 final size:9
Alignment explanation
Indices: 14615637--14615696 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
14615627 TTTTTTTAGT
14615637 TTATT-TTA
1 TTATTATTA
*
14615645 TTAATA-TA
1 TTATTATTA
14615653 GTTATTATTA
1 -TTATTATTA
*
14615663 TTTTTATTA
1 TTATTATTA
*
14615672 TTACTATTA
1 TTATTATTA
14615681 TTATTA-TA
1 TTATTATTA
14615689 TTTATTAT
1 -TTATTAT
14615697 ACTTACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
8 8 0.20
9 31 0.76
10 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (9 bp):
TTATTATTA
Found at i:14615671 original size:24 final size:24
Alignment explanation
Indices: 14615640--14615699 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
14615630 TTTTAGTTTA
14615640 TTTTATTAATA-TAGTTATTATTAT
1 TTTTATTAATACTA-TTATTATTAT
*
14615664 TTTTATTATTACTATTATTATTAT
1 TTTTATTAATACTATTATTATTAT
*
14615688 ATTTATT-ATACT
1 TTTTATTAATACT
14615700 TACATATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.12
24 26 0.81
25 2 0.06
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (24 bp):
TTTTATTAATACTATTATTATTAT
Found at i:14615867 original size:25 final size:26
Alignment explanation
Indices: 14615839--14615898 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
14615829 CATTCATATT
14615839 TTTTATAATT-ATTTATGTTT-T-CATG
1 TTTTATAATTCA--TATGTTTATACATG
*
14615864 TTTTATAATTCATATGTTTATACATT
1 TTTTATAATTCATATGTTTATACATG
14615890 TTTTATAAT
1 TTTTATAAT
14615899 ATGTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 7 0.23
25 11 0.35
26 13 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTATAATTCATATGTTTATACATG
Found at i:14615867 original size:26 final size:26
Alignment explanation
Indices: 14615836--14615898 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
14615826 ATACATTCAT
14615836 ATTTTTTATAATT-ATTTATGTTT-T-C
1 ATTTTTTATAATTCA--TATGTTTATAC
*
14615861 ATGTTTTATAATTCATATGTTTATAC
1 ATTTTTTATAATTCATATGTTTATAC
14615887 ATTTTTTATAAT
1 ATTTTTTATAAT
14615899 ATGTACAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.21
25 13 0.39
26 13 0.39
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
ATTTTTTATAATTCATATGTTTATAC
Found at i:14626185 original size:15 final size:16
Alignment explanation
Indices: 14626151--14626188 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14626141 TTACTTTGAC
14626151 TTGTTCTAAACATGAG
1 TTGTTCTAAACATGAG
* *
14626167 TTGTTCTCAATAT-AG
1 TTGTTCTAAACATGAG
14626182 TTGTTCT
1 TTGTTCT
14626189 TAATGTAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (16 bp):
TTGTTCTAAACATGAG
Found at i:14626254 original size:16 final size:16
Alignment explanation
Indices: 14626214--14626255 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14626204 TCTGAATAAG
14626214 AGTTGTTCTATGGTAA
1 AGTTGTTCTATGGTAA
* *
14626230 TGTTTTTCT-TGGTAA
1 AGTTGTTCTATGGTAA
14626245 AGCTTGTTCTA
1 AG-TTGTTCTA
14626256 AATAATGACT
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.19, C:0.10, G:0.21, T:0.50
Consensus pattern (16 bp):
AGTTGTTCTATGGTAA
Found at i:14628005 original size:43 final size:43
Alignment explanation
Indices: 14627939--14628139 Score: 154
Period size: 43 Copynumber: 4.8 Consensus size: 43
14627929 GCGTCGCTAA
* *
14627939 CTTTAGCGGCGCTTTT-TTCACAAACGCCGCTAAAGACCACGAC
1 CTTTAACGGCACTTTTCTT-ACAAACGCCGCTAAAGACCACGAC
* *
14627982 CTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGAACA-AAC
1 CTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGACCACGAC
* * * * *** * *
14628024 CTTTAGCGACGCTTCTAGCAAAAACGCCACTAAA-A--AC-A-
1 CTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGACCACGAC
* *
14628062 ---TAATGCGGCCCTTATTC-CACAAACGCCGCTAAAGACCACGAC
1 CTTTAA--CGGCACTT-TTCTTACAAACGCCGCTAAAGACCACGAC
14628104 CTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGA
1 CTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGA
14628140 ACAAACCTTT
Statistics
Matches: 122, Mismatches: 22, Indels: 28
0.71 0.13 0.16
Matches are distributed among these distances:
35 2 0.02
37 20 0.16
38 2 0.02
39 2 0.02
40 2 0.02
41 2 0.02
42 30 0.25
43 57 0.47
44 2 0.02
45 3 0.02
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (43 bp):
CTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGACCACGAC
Found at i:14628049 original size:42 final size:43
Alignment explanation
Indices: 14628003--14628192 Score: 137
Period size: 42 Copynumber: 4.6 Consensus size: 43
14627993 CTTTTCTTAC
14628003 AAACGCCGCTAAAGAACA-AACCTTTAGCGACGCTTCTAGCAA
1 AAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTCTAGCAA
* * * * ** *
14628045 AAACGCCACTAAA-AACATAA----T-GCGGCCCTTATTCCAC
1 AAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTCTAGCAA
* ** * * * * *** *
14628082 AAACGCCGCTAAAGACCACGACCTTTAACGGCACTTTTCTTAC
1 AAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTCTAGCAA
14628125 AAACGCCGCTAAAGAACA-AACCTTTAGCGACGCTTCTAGCAA
1 AAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTCTAGCAA
* *
14628167 AAACGCCACTAAA-AACATAATCTTTA
1 AAACGCCGCTAAAGAACATAACCTTTA
14628193 AAAAAATTTA
Statistics
Matches: 111, Mismatches: 29, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
37 22 0.20
38 5 0.05
41 8 0.07
42 49 0.44
43 27 0.24
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTCTAGCAA
Found at i:14628161 original size:122 final size:122
Alignment explanation
Indices: 14627957--14628187 Score: 462
Period size: 122 Copynumber: 1.9 Consensus size: 122
14627947 GCGCTTTTTT
14627957 CACAAACGCCGCTAAAGACCACGACCTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGAACAA
1 CACAAACGCCGCTAAAGACCACGACCTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGAACAA
14628022 ACCTTTAGCGACGCTTCTAGCAAAAACGCCACTAAAAACATAATGCGGCCCTTATTC
66 ACCTTTAGCGACGCTTCTAGCAAAAACGCCACTAAAAACATAATGCGGCCCTTATTC
14628079 CACAAACGCCGCTAAAGACCACGACCTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGAACAA
1 CACAAACGCCGCTAAAGACCACGACCTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGAACAA
14628144 ACCTTTAGCGACGCTTCTAGCAAAAACGCCACTAAAAACATAAT
66 ACCTTTAGCGACGCTTCTAGCAAAAACGCCACTAAAAACATAAT
14628188 CTTTAAAAAA
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 109 1.00
ACGTcount: A:0.37, C:0.31, G:0.13, T:0.19
Consensus pattern (122 bp):
CACAAACGCCGCTAAAGACCACGACCTTTAACGGCACTTTTCTTACAAACGCCGCTAAAGAACAA
ACCTTTAGCGACGCTTCTAGCAAAAACGCCACTAAAAACATAATGCGGCCCTTATTC
Found at i:14634467 original size:7 final size:7
Alignment explanation
Indices: 14634455--14634589 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 7
14634445 ACTAGTTAAT
14634455 CTAAACC
1 CTAAACC
14634462 CTAAACC
1 CTAAACC
*
14634469 ATAAA-C
1 CTAAACC
14634475 CTAAACC
1 CTAAACC
14634482 CTAAAACC
1 CT-AAACC
*
14634490 TTAAACC
1 CTAAACC
* *
14634497 CTTAACA
1 CTAAACC
14634504 C-ATAACC
1 CTA-AACC
14634511 TCTAAACC
1 -CTAAACC
*
14634519 TTAAACC
1 CTAAACC
*
14634526 C-CAACC
1 CTAAACC
*
14634532 TTTAAACC
1 -CTAAACC
*
14634540 ATAAACC
1 CTAAACC
*
14634547 ATAAACC
1 CTAAACC
* *
14634554 ATAAATC
1 CTAAACC
* *
14634561 ATAACCC
1 CTAAACC
14634568 CTAAACC
1 CTAAACC
*
14634575 CATAATCC
1 C-TAAACC
*
14634583 ATAAACC
1 CTAAACC
14634590 TTATTATAAT
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
6 9 0.09
7 68 0.69
8 20 0.20
9 1 0.01
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:14634475 original size:14 final size:14
Alignment explanation
Indices: 14634455--14634589 Score: 87
Period size: 14 Copynumber: 9.5 Consensus size: 14
14634445 ACTAGTTAAT
*
14634455 CTAAACCCTAAACC
1 CTAAACCATAAACC
*
14634469 ATAAACC-TAAACC
1 CTAAACCATAAACC
*
14634482 CTAAAACCTTAAACC
1 CT-AAACCATAAACC
*
14634497 CTTAACACAT-AACC
1 CTAAAC-CATAAACC
*
14634511 TCTAAACCTTAAACC
1 -CTAAACCATAAACC
* *
14634526 C-CAACCTTTAAACC
1 CTAAACC-ATAAACC
*
14634540 ATAAACCATAAACC
1 CTAAACCATAAACC
* * *
14634554 ATAAATCATAACCC
1 CTAAACCATAAACC
*
14634568 CTAAACCCATAATCC
1 CTAAA-CCATAAACC
*
14634583 ATAAACC
1 CTAAACC
14634590 TTATTATAAT
Statistics
Matches: 97, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
13 11 0.11
14 52 0.54
15 34 0.35
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:14634558 original size:21 final size:21
Alignment explanation
Indices: 14634456--14634589 Score: 94
Period size: 21 Copynumber: 6.3 Consensus size: 21
14634446 CTAGTTAATC
14634456 TAAACCCTAAACCATAAACC-
1 TAAACCCTAAACCATAAACCA
* *
14634476 TAAACCCTAAAACCTTAAACCC
1 TAAACCCT-AAACCATAAACCA
* * * *
14634498 TTAACAC-ATAACCTCTAAACCT
1 TAAACCCTA-AACC-ATAAACCA
* *
14634520 TAAACCC-CAACCTTTAAACCA
1 TAAACCCTAAACC-ATAAACCA
* *
14634541 TAAACCATAAACCATAAATCA
1 TAAACCCTAAACCATAAACCA
* *
14634562 TAACCCCTAAACCCATAATCCA
1 TAAACCCTAAA-CCATAAACCA
14634584 TAAACC
1 TAAACC
14634590 TTATTATAAT
Statistics
Matches: 89, Mismatches: 19, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
20 9 0.10
21 47 0.53
22 33 0.37
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCCTAAACCATAAACCA
Found at i:14634821 original size:41 final size:41
Alignment explanation
Indices: 14634764--14634950 Score: 329
Period size: 41 Copynumber: 4.6 Consensus size: 41
14634754 GGCACTTTTC
* *
14634764 CAAAAACGCCGCTAAAGACCCAAGCATTAGCAGCGCTTCTT
1 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
*
14634805 CAAAAGTGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
1 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
14634846 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
1 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
14634887 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
1 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
* *
14634928 CAAAAACGCCGCTAAAGTCCCAA
1 CAAAAGCGCCGCTAAAGACCCAA
14634951 AAACTAACAA
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 140 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.17
Consensus pattern (41 bp):
CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
Found at i:14635074 original size:40 final size:40
Alignment explanation
Indices: 14634983--14635117 Score: 152
Period size: 40 Copynumber: 3.4 Consensus size: 40
14634973 TGGGCTTAGG
* *
14634983 TTTTT-GCGGCGCTTTTTGGAAAA-CGCCGCTAATGC-TGA
1 TTTTTAGCGGCG-TTTTTAGAAAAGCGCCGCTAATACTTGA
*
14635021 TTTTTAGCGGCGTTTTTAGAAAAGCGCCGCGAATACTTGA
1 TTTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATACTTGA
* * ** *
14635061 TCTGTAGCGGCGTTTTTCTAGAAGCGCCGCTAATGA-TTGA
1 TTTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAAT-ACTTGA
14635101 TTTTTAGCGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
14635118 TATCCAAACG
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
38 15 0.18
39 16 0.20
40 50 0.61
41 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATACTTGA
Found at i:14639748 original size:24 final size:24
Alignment explanation
Indices: 14639710--14639786 Score: 72
Period size: 24 Copynumber: 3.3 Consensus size: 24
14639700 TGCCAATATT
* *
14639710 AAAGTGATAGAGGCACTATGGTGC
1 AAAGTGATGGTGGCACTATGGTGC
**
14639734 AAAGTGATGGTGGCACTACAGTGC
1 AAAGTGATGGTGGCACTATGGTGC
*
14639758 -AAGTGAATGGT---ACTTTGGTGC
1 AAAGTG-ATGGTGGCACTATGGTGC
14639779 AAAGTGAT
1 AAAGTGAT
14639787 ATCCACATGT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.20
22 5 0.11
23 5 0.11
24 25 0.57
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.25
Consensus pattern (24 bp):
AAAGTGATGGTGGCACTATGGTGC
Found at i:14641456 original size:26 final size:26
Alignment explanation
Indices: 14641427--14641476 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14641417 TTGTAGAGTT
14641427 AGTATAACCTAGAGGGAAGAACCAGG
1 AGTATAACCTAGAGGGAAGAACCAGG
14641453 AGTATAACCTAGAGGGAAGAACCA
1 AGTATAACCTAGAGGGAAGAACCA
14641477 TGAGATGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.16, G:0.28, T:0.12
Consensus pattern (26 bp):
AGTATAACCTAGAGGGAAGAACCAGG
Found at i:14661751 original size:27 final size:27
Alignment explanation
Indices: 14661721--14661777 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
14661711 TTATCTTAGT
14661721 TGTCTACCTCCTTGAGAGACGAATATC
1 TGTCTACCTCCTTGAGAGACGAATATC
14661748 TGTCTACCTCCTTGAGAGACGAATATC
1 TGTCTACCTCCTTGAGAGACGAATATC
14661775 TGT
1 TGT
14661778 GAAACAACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (27 bp):
TGTCTACCTCCTTGAGAGACGAATATC
Found at i:14661788 original size:27 final size:27
Alignment explanation
Indices: 14661731--14661789 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
14661721 TGTCTACCTC
* * **
14661731 CTTGAGAGACGAATATCTGTCTACCTC
1 CTTGAGAGACGAATATCTGTCAAACAA
*
14661758 CTTGAGAGACGAATATCTGTGAAACAA
1 CTTGAGAGACGAATATCTGTCAAACAA
14661785 CTTGA
1 CTTGA
14661790 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (27 bp):
CTTGAGAGACGAATATCTGTCAAACAA
Found at i:14665902 original size:16 final size:16
Alignment explanation
Indices: 14665883--14665929 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
14665873 TTTATGTTTT
14665883 CTTATTTTTAACTTTA
1 CTTATTTTTAACTTTA
*
14665899 CTTATTTTATTACTTTA
1 CTTATTTT-TAACTTTA
14665916 -TTATTATTTAACTT
1 CTTATT-TTTAACTT
14665930 ATAATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.64
Consensus pattern (16 bp):
CTTATTTTTAACTTTA
Found at i:14673802 original size:44 final size:43
Alignment explanation
Indices: 14673734--14673919 Score: 273
Period size: 43 Copynumber: 4.3 Consensus size: 43
14673724 TTTTAGAAAT
** *
14673734 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
14673777 AAACGCCGCTAAAAGACCAAGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCT-AAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
14673821 AAACGCCGCTAAAGACCAAGACCTTTAACGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
14673864 AAGCACCGCTAAAGACCAAGACCTTTAGAGACGCTTTTCACAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
14673907 AAACGCCGCTAAA
1 AAACGCCGCTAAA
14673920 AATATATCTT
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 89 0.70
44 39 0.30
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:14674159 original size:12 final size:12
Alignment explanation
Indices: 14674142--14674176 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
14674132 ATTATATTTT
14674142 ATTTATTTAATG
1 ATTTATTTAATG
14674154 ATTTATTTAATG
1 ATTTATTTAATG
14674166 ATTTATTTAAT
1 ATTTATTTAAT
14674177 ATTCTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (12 bp):
ATTTATTTAATG
Found at i:14674571 original size:43 final size:43
Alignment explanation
Indices: 14674523--14674608 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
14674513 ACATATGCAA
* * *
14674523 GGTAATAAAACATAGAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATAGAATACATTTACTTAATCAAGGAAATCTT
* *
14674566 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATAGAATACATTTACTTAATCAAGGAAATCTT
14674609 ATAATGAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATAGAATACATTTACTTAATCAAGGAAATCTT
Found at i:14676098 original size:19 final size:19
Alignment explanation
Indices: 14676074--14676111 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14676064 AAAAAAGAGA
14676074 GAAAAAAAAAGGATCTCTT
1 GAAAAAAAAAGGATCTCTT
14676093 GAAAAAAAAAGGATCTCTT
1 GAAAAAAAAAGGATCTCTT
14676112 ATTTTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (19 bp):
GAAAAAAAAAGGATCTCTT
Found at i:14678809 original size:7 final size:7
Alignment explanation
Indices: 14678799--14678898 Score: 51
Period size: 7 Copynumber: 14.3 Consensus size: 7
14678789 ATAAGCCCTA
14678799 AACCCAT
1 AACCCAT
*
14678806 AACCCTT
1 AACCCAT
*
14678813 AACCCCT
1 AACCCAT
14678820 AACCTC-T
1 AACC-CAT
*
14678827 AACCCTT
1 AACCCAT
*
14678834 AACCCCT
1 AACCCAT
* *
14678841 AAACCTT
1 AACCCAT
*
14678848 AAACCC-C
1 -AACCCAT
*
14678855 AACCCTT
1 AACCCAT
*
14678862 AAACCAT
1 AACCCAT
*
14678869 AAACCAT
1 AACCCAT
*
14678876 AAACCAT
1 AACCCAT
*
14678883 AATCCAT
1 AACCCAT
*
14678890 AATCCAT
1 AACCCAT
14678897 AA
1 AA
14678899 TCCCTAAACA
Statistics
Matches: 78, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
6 6 0.08
7 67 0.86
8 5 0.06
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCCAT
Found at i:14678811 original size:14 final size:15
Alignment explanation
Indices: 14678788--14678845 Score: 57
Period size: 14 Copynumber: 4.0 Consensus size: 15
14678778 AATCATAAAA
*
14678788 CATAAGCCCTAAACC
1 CATAACCCCTAAACC
*
14678803 CATAA-CCCTTAACC
1 CATAACCCCTAAACC
* *
14678817 CCTAACCTCT-AACC
1 CATAACCCCTAAACC
*
14678831 CTTAACCCCTAAACC
1 CATAACCCCTAAACC
14678846 TTAAACCCCA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
14 24 0.67
15 12 0.33
ACGTcount: A:0.34, C:0.45, G:0.02, T:0.19
Consensus pattern (15 bp):
CATAACCCCTAAACC
Found at i:14678858 original size:21 final size:22
Alignment explanation
Indices: 14678806--14678873 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 22
14678796 CTAAACCCAT
*
14678806 AACCCTTAACCCCT-AACCTCT-
1 AACCCTCAACCCCTAAACCT-TA
*
14678827 AACCCTTAACCCCTAAACCTTA
1 AACCCTCAACCCCTAAACCTTA
* *
14678849 AACCC-CAACCCTTAAACCATA
1 AACCCTCAACCCCTAAACCTTA
14678870 AACC
1 AACC
14678874 ATAAACCATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
21 32 0.76
22 10 0.24
ACGTcount: A:0.37, C:0.44, G:0.00, T:0.19
Consensus pattern (22 bp):
AACCCTCAACCCCTAAACCTTA
Found at i:14678899 original size:7 final size:7
Alignment explanation
Indices: 14678865--14678916 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
14678855 AACCCTTAAA
*
14678865 CCATAAA
1 CCATAAT
*
14678872 CCATAAA
1 CCATAAT
14678879 CCATAAT
1 CCATAAT
14678886 CCATAAT
1 CCATAAT
14678893 CCATAAT
1 CCATAAT
* *
14678900 CCCTAAA
1 CCATAAT
14678907 CACATAAT
1 C-CATAAT
14678915 CC
1 CC
14678917 CTAAACCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
7 34 0.87
8 5 0.13
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
CCATAAT
Found at i:14678914 original size:15 final size:14
Alignment explanation
Indices: 14678861--14678923 Score: 81
Period size: 14 Copynumber: 4.4 Consensus size: 14
14678851 CCCCAACCCT
*
14678861 TAAACCATAAACCA
1 TAAACCATAATCCA
14678875 TAAACCATAATCCA
1 TAAACCATAATCCA
* *
14678889 TAATCCATAATCCC
1 TAAACCATAATCCA
*
14678903 TAAACACATAATCCC
1 TAAAC-CATAATCCA
14678918 TAAACC
1 TAAACC
14678924 TTAAAATCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
14 30 0.68
15 14 0.32
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:14679878 original size:71 final size:73
Alignment explanation
Indices: 14679707--14679878 Score: 226
Period size: 71 Copynumber: 2.4 Consensus size: 73
14679697 CTGAGCATTA
* * * * *
14679707 GCGGCGCTTCTT--AAAAATGCCGCTAAATCTCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTA
1 GCGGCGCTT-TTCCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACAGCGCCGTTGGGCATA
14679770 GTTTTTTTTT
65 G-TTTTTTTT
* * *
14679780 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTTCCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACAGCGCCGTTGGGCATAG
14679844 -TTTTTTT
66 TTTTTTTT
14679851 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTTCCAAAAACGCCACTAAA
14679879 GCCCTGGGCA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
71 32 0.37
72 1 0.01
73 27 0.31
74 27 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTTCCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACAGCGCCGTTGGGCATAG
TTTTTTTT
Found at i:14680024 original size:186 final size:186
Alignment explanation
Indices: 14679696--14680066 Score: 559
Period size: 186 Copynumber: 2.0 Consensus size: 186
14679686 ATTTTAAATT
* *
14679696 CCTGAGCATTAGCGGCGCTTCTTAAAAATGCCGCTAAATCTCCGAAAGCTCAGAAAACGGCGCCG
1 CCTGAGCATTAGCGGCGCTTCTTAAAAACGCCGCTAAATCTCCGAAAGCTCAGAAAACGGCACCG
* * *
14679761 TTGGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAA
66 TTGGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAA
* *
14679826 CAGCGCCGTTGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGC
131 CAGCGCCGTTGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGC
* * *
14679881 CCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATC-CCTGAAATCTTAGAAAACGGCAC
1 CCTGAGCATTAGCGGCGC-TTCTTAAAAACGCCGCTAAATCTCC-GAAAGCTCAGAAAACGGCAC
*
14679945 CGTTGGGCTTAG-TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGA
64 CGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAG-
* * *
14680009 AAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
128 AAACAGCGCCGTTGGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14680067 TCCCCGAAAG
Statistics
Matches: 167, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
185 66 0.40
186 69 0.41
188 32 0.19
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (186 bp):
CCTGAGCATTAGCGGCGCTTCTTAAAAACGCCGCTAAATCTCCGAAAGCTCAGAAAACGGCACCG
TTGGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAA
CAGCGCCGTTGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGC
Found at i:14680069 original size:74 final size:73
Alignment explanation
Indices: 14679892--14680137 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14679882 CTGGGCATTA
** * * * *
14679892 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14679957 TTTTTTTT
66 TTTTTTTT
* *
14679965 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680030 TTTTTTTTT
66 -TTTTTTTT
* * * *
14680039 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680103 -TTTTTTT
66 TTTTTTTT
* *
14680110 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14680138 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14680177 original size:186 final size:187
Alignment explanation
Indices: 14679965--14680325 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14679955 AGTTTTTTTT
*
14679965 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14680030 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14680094 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14680151 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14680216 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14680281 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14680326 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14680185 original size:259 final size:259
Alignment explanation
Indices: 14679726--14689404 Score: 19340
Period size: 259 Copynumber: 37.4 Consensus size: 259
14679716 CTTAAAAATG
* *
14679726 CCGCTAAATCTCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14679791 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14679856 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14679921 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14679985 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14680050 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14680115 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14680180 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14680244 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14680309 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14680374 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14680439 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14680503 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14680568 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14680633 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14680698 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14680762 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14680827 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14680892 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14680957 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14681021 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14681086 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14681151 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14681216 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14681280 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14681345 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14681410 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14681475 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14681539 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14681604 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14681669 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14681734 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14681798 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14681863 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14681928 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14681993 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14682057 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14682122 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14682187 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14682252 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14682316 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14682381 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14682446 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14682511 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14682575 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14682640 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14682705 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14682770 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14682834 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14682899 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14682964 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14683029 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14683093 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14683158 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14683223 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14683288 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14683352 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14683417 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14683482 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14683547 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14683611 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14683676 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14683741 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14683806 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14683870 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14683935 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14684000 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14684065 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14684129 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14684194 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14684259 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14684324 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14684388 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14684453 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14684518 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14684583 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14684647 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14684712 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14684777 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14684842 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14684906 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14684971 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14685036 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14685101 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14685165 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14685230 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14685295 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14685360 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14685424 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14685489 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14685554 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14685619 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14685683 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14685748 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14685813 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14685878 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14685942 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14686007 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14686072 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14686137 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14686201 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14686266 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14686331 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14686396 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14686460 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14686525 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14686590 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14686655 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14686719 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14686784 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14686849 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14686914 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14686978 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14687043 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14687108 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14687173 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14687237 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14687302 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14687367 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14687432 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14687496 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14687561 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14687626 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14687691 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14687755 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14687820 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14687885 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14687950 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14688014 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14688079 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14688144 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14688209 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14688273 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14688338 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14688403 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14688468 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14688532 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14688597 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14688662 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14688727 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14688791 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14688856 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14688921 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14688986 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14689050 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14689115 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
14689180 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
131 GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
14689245 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
196 CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
14689309 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
1 CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
14689374 CCAAAAACGCCTCTAAATCCCCGAAAGCTCA
66 CCAAAAACGCCTCTAAATCCCCGAAAGCTCA
14689405 ATCCCTGAGC
Statistics
Matches: 9418, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
259 9418 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (259 bp):
CCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGCGGAGCTTTC
CCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAACAGCGCCGTTGGGCATAGTTTTTTTGCGGC
GCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAT
CCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACA
Found at i:14680328 original size:74 final size:73
Alignment explanation
Indices: 14680151--14680396 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14680141 CTGGGCATTA
** * * * *
14680151 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680216 TTTTTTTT
66 TTTTTTTT
* *
14680224 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680289 TTTTTTTTT
66 -TTTTTTTT
* * * *
14680298 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680362 -TTTTTTT
66 TTTTTTTT
* *
14680369 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14680397 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14680436 original size:186 final size:187
Alignment explanation
Indices: 14680224--14680584 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14680214 AGTTTTTTTT
*
14680224 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14680289 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14680353 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14680410 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14680475 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14680540 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14680585 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14680587 original size:74 final size:73
Alignment explanation
Indices: 14680410--14680655 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14680400 CTGGGCATTA
** * * * *
14680410 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680475 TTTTTTTT
66 TTTTTTTT
* *
14680483 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680548 TTTTTTTTT
66 -TTTTTTTT
* * * *
14680557 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680621 -TTTTTTT
66 TTTTTTTT
* *
14680628 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14680656 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14680695 original size:186 final size:187
Alignment explanation
Indices: 14680483--14680843 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14680473 AGTTTTTTTT
*
14680483 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14680548 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14680612 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14680669 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14680734 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14680799 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14680844 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14680846 original size:74 final size:73
Alignment explanation
Indices: 14680669--14680914 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14680659 CTGGGCATTA
** * * * *
14680669 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680734 TTTTTTTT
66 TTTTTTTT
* *
14680742 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680807 TTTTTTTTT
66 -TTTTTTTT
* * * *
14680816 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680880 -TTTTTTT
66 TTTTTTTT
* *
14680887 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14680915 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14680954 original size:186 final size:187
Alignment explanation
Indices: 14680742--14681102 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14680732 AGTTTTTTTT
*
14680742 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14680807 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14680871 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14680928 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14680993 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14681058 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14681103 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14681105 original size:74 final size:73
Alignment explanation
Indices: 14680928--14681173 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14680918 CTGGGCATTA
** * * * *
14680928 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14680993 TTTTTTTT
66 TTTTTTTT
* *
14681001 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681066 TTTTTTTTT
66 -TTTTTTTT
* * * *
14681075 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681139 -TTTTTTT
66 TTTTTTTT
* *
14681146 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14681174 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14681213 original size:186 final size:187
Alignment explanation
Indices: 14681001--14681361 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14680991 AGTTTTTTTT
*
14681001 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14681066 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14681130 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14681187 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14681252 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14681317 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14681362 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14681364 original size:74 final size:73
Alignment explanation
Indices: 14681187--14681432 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14681177 CTGGGCATTA
** * * * *
14681187 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681252 TTTTTTTT
66 TTTTTTTT
* *
14681260 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681325 TTTTTTTTT
66 -TTTTTTTT
* * * *
14681334 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681398 -TTTTTTT
66 TTTTTTTT
* *
14681405 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14681433 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14681472 original size:186 final size:187
Alignment explanation
Indices: 14681260--14681620 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14681250 AGTTTTTTTT
*
14681260 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14681325 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14681389 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14681446 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14681511 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14681576 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14681621 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14681623 original size:74 final size:73
Alignment explanation
Indices: 14681446--14681691 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14681436 CTGGGCATTA
** * * * *
14681446 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681511 TTTTTTTT
66 TTTTTTTT
* *
14681519 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681584 TTTTTTTTT
66 -TTTTTTTT
* * * *
14681593 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681657 -TTTTTTT
66 TTTTTTTT
* *
14681664 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14681692 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14681731 original size:186 final size:187
Alignment explanation
Indices: 14681519--14681879 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14681509 AGTTTTTTTT
*
14681519 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14681584 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14681648 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14681705 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14681770 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14681835 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14681880 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Found at i:14681882 original size:74 final size:73
Alignment explanation
Indices: 14681705--14681950 Score: 343
Period size: 73 Copynumber: 3.4 Consensus size: 73
14681695 CTGGGCATTA
** * * * *
14681705 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681770 TTTTTTTT
66 TTTTTTTT
* *
14681778 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681843 TTTTTTTTT
66 -TTTTTTTT
* * * *
14681852 GCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGTTGGGCATAG
1 GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
14681916 -TTTTTTT
66 TTTTTTTT
* *
14681923 GCGGCGCTTTTCCAAAAACGCCACTAAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAA
14681951 GCCCTGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
71 32 0.21
73 76 0.49
74 47 0.30
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (73 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
TTTTTTTT
Found at i:14681990 original size:186 final size:187
Alignment explanation
Indices: 14681778--14682138 Score: 537
Period size: 186 Copynumber: 1.9 Consensus size: 187
14681768 AGTTTTTTTT
*
14681778 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* * *
14681843 TTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTCAG-AAACAGCGCCGT
66 -TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGT
* *
14681907 TGGGCATAG-TTTTTTTGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCTGGGCATTA
130 TGGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
** * ** * *
14681964 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAAATCTTAGAAAACGGCACCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
* *
14682029 TTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCGCCGTT
66 TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
* *
14682094 GGGCTTAGTTTTTTTTTGCGGAGCTTTCCCAAAAACGCCTCTAAA
131 GGGCATAG-TTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAA
14682139 TCCCCGAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 47 0.30
186 76 0.49
188 32 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (187 bp):
GCGGCGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACGGCACCGTTGGGCTTAG
TTTTTTTTGCGGAGCTTTCCCAAAAACACCGCTAAATCCCCAAAAGCTCAGAAAACAGCGCCGTT
GGGCATAGTTTTTTTTGCGGAGCTTTCCCAAAAACGCCACTAAAGCCCTGGGCATTA
Done.