Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30015117
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1306243 characters in sequence are not A, C, G, or T
File 44 of 85
Found at i:14861571 original size:22 final size:22
Alignment explanation
Indices: 14861532--14861579 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
14861522 ATAATAGTTC
14861532 AAAATTTTTCTTTCCATTTATT
1 AAAATTTTTCTTTCCATTTATT
*
14861554 AAAATATTTT-TTTGCATTTATT
1 AAAAT-TTTTCTTTCCATTTATT
14861576 AAAA
1 AAAA
14861580 CTATGTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.54
Consensus pattern (22 bp):
AAAATTTTTCTTTCCATTTATT
Found at i:14862195 original size:42 final size:42
Alignment explanation
Indices: 14862148--14862283 Score: 184
Period size: 42 Copynumber: 3.2 Consensus size: 42
14862138 TAAAAATATC
* * *
14862148 AAGGAAGCAACATGAGAAAGCAACATCCATG-TCTAAACAAAA
1 AAGGAAGCAACTTGGGAAAGCAACATCCAAGTTC-AAACAAAA
*
14862190 AAGGAAGCAACTTGGGAAAACAACATCCAAGTTCAAACAAAA
1 AAGGAAGCAACTTGGGAAAGCAACATCCAAGTTCAAACAAAA
* * * *
14862232 AAGAAAGCAACTTGGGAAAGCAACATCCAGGTTCAGATAAAA
1 AAGGAAGCAACTTGGGAAAGCAACATCCAAGTTCAAACAAAA
14862274 AAGGAAGCAA
1 AAGGAAGCAA
14862284 TGTGGAATCA
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 81 0.98
43 2 0.02
ACGTcount: A:0.51, C:0.18, G:0.19, T:0.12
Consensus pattern (42 bp):
AAGGAAGCAACTTGGGAAAGCAACATCCAAGTTCAAACAAAA
Found at i:14864061 original size:12 final size:12
Alignment explanation
Indices: 14864044--14864071 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14864034 AGTTTATAGA
14864044 ATTATCAGAATT
1 ATTATCAGAATT
14864056 ATTATCAGAATT
1 ATTATCAGAATT
14864068 ATTA
1 ATTA
14864072 GAACTACTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (12 bp):
ATTATCAGAATT
Found at i:14866965 original size:8 final size:8
Alignment explanation
Indices: 14866952--14866976 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14866942 CATGTTTTTA
14866952 CTCAAAAT
1 CTCAAAAT
14866960 CTCAAAAT
1 CTCAAAAT
14866968 CTCAAAAT
1 CTCAAAAT
14866976 C
1 C
14866977 CGCCATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (8 bp):
CTCAAAAT
Found at i:14872272 original size:33 final size:33
Alignment explanation
Indices: 14872230--14872293 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
14872220 ACCCCACATA
*
14872230 CAATTCAATCA-AAACATTTCAATCAATTTCATG
1 CAATTCAATCAGAAACATATCAA-CAATTTCATG
*
14872263 CAATTCAATCAGAATCATATCAACAATTTCA
1 CAATTCAATCAGAAACATATCAACAATTTCA
14872294 AGAAAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.44, C:0.22, G:0.03, T:0.31
Consensus pattern (33 bp):
CAATTCAATCAGAAACATATCAACAATTTCATG
Found at i:14886960 original size:45 final size:46
Alignment explanation
Indices: 14886863--14886968 Score: 124
Period size: 45 Copynumber: 2.3 Consensus size: 46
14886853 TATCCTATAA
* * * ** * *
14886863 ATGGAATTTACCTTTGGCTATGGACTGCACAGGAAATAACCTGTAG
1 ATGGAATCTACCTCTGGCTATGGACTACACAACAAATAACATGCAG
*
14886909 AGGGAATCTACCTCTGGCTATGGA-TACACAACAAATAACATGCAG
1 ATGGAATCTACCTCTGGCTATGGACTACACAACAAATAACATGCAG
*
14886954 ATGGAATCTGCCTCT
1 ATGGAATCTACCTCT
14886969 TGTTGTGGGT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
45 29 0.58
46 21 0.42
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (46 bp):
ATGGAATCTACCTCTGGCTATGGACTACACAACAAATAACATGCAG
Found at i:14889472 original size:4 final size:4
Alignment explanation
Indices: 14889463--14889488 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
14889453 TATTTTAGAT
14889463 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
14889489 TTAGTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:14889543 original size:3 final size:3
Alignment explanation
Indices: 14889529--14889590 Score: 74
Period size: 3 Copynumber: 21.3 Consensus size: 3
14889519 AAATGACATT
* * *
14889529 TTA TTA TT- TTA TTA TTA TTG TTA TTA TTA TTG TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
14889576 TTG TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA T
14889591 GAAATAAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 4 0.08
3 45 0.92
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:14890269 original size:21 final size:21
Alignment explanation
Indices: 14890240--14890296 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
14890230 GGTGGATCAA
* *
14890240 CTCTTACGAGTTTCTGTTCAG
1 CTCTCACGAGCTTCTGTTCAG
*
14890261 CTCTCACGAGCTTCTGTTTAG
1 CTCTCACGAGCTTCTGTTCAG
* *
14890282 CTCTTACAAGCTTCT
1 CTCTCACGAGCTTCT
14890297 ATCGATGTGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.28, G:0.16, T:0.40
Consensus pattern (21 bp):
CTCTCACGAGCTTCTGTTCAG
Found at i:14904538 original size:20 final size:21
Alignment explanation
Indices: 14904494--14904541 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
14904484 CAAATTTGAA
14904494 ATTTTTAGTCAATTTTACAATT
1 ATTTTTAGTCAATTTTA-AATT
* *
14904516 ATTTTTAGTGAATTTT-TATT
1 ATTTTTAGTCAATTTTAAATT
14904536 ATTTTT
1 ATTTTT
14904542 GACAGATTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
22 15 0.62
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
ATTTTTAGTCAATTTTAAATT
Found at i:14906695 original size:10 final size:10
Alignment explanation
Indices: 14906682--14906742 Score: 63
Period size: 10 Copynumber: 6.2 Consensus size: 10
14906672 AACCGAACAA
14906682 AACAGAATAG
1 AACAGAATAG
14906692 AACAGAATAG
1 AACAGAATAG
* *
14906702 AACAAAACA-
1 AACAGAATAG
14906711 AATCA-AATAG
1 AA-CAGAATAG
* *
14906721 AATAGAGTAG
1 AACAGAATAG
14906731 AACAGAATAG
1 AACAGAATAG
14906741 AA
1 AA
14906743 AATATATGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
9 6 0.15
10 35 0.85
ACGTcount: A:0.62, C:0.10, G:0.16, T:0.11
Consensus pattern (10 bp):
AACAGAATAG
Found at i:14906731 original size:29 final size:30
Alignment explanation
Indices: 14906677--14906734 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
14906667 AACAGAACCG
14906677 AACAAAACAGAATAGAACAGAATAGAACAA
1 AACAAAACAGAATAGAACAGAATAGAACAA
* * *
14906707 AACAAATCA-AATAGAATAGAGTAGAACA
1 AACAAAACAGAATAGAACAGAATAGAACA
14906735 GAATAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.10
Consensus pattern (30 bp):
AACAAAACAGAATAGAACAGAATAGAACAA
Found at i:14910585 original size:21 final size:21
Alignment explanation
Indices: 14910561--14910666 Score: 60
Period size: 21 Copynumber: 5.2 Consensus size: 21
14910551 CACGATCTGT
14910561 CCACACGGCCGTGTATCTCAG
1 CCACACGGCCGTGTATCTCAG
*
14910582 CCACACGATCC-TG----TCAG
1 CCACACG-GCCGTGTATCTCAG
* * * *
14910599 CCACATGGTCGTGTCTCTCAA
1 CCACACGGCCGTGTATCTCAG
* * *
14910620 CCACACAGTCGCGTATCTCAG
1 CCACACGGCCGTGTATCTCAG
* ** *
14910641 TCACACCACCGTGTTTCTCAG
1 CCACACGGCCGTGTATCTCAG
14910662 CCACA
1 CCACA
14910667 TGGCTGTTTA
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
16 1 0.02
17 12 0.19
21 47 0.76
22 2 0.03
ACGTcount: A:0.22, C:0.39, G:0.18, T:0.22
Consensus pattern (21 bp):
CCACACGGCCGTGTATCTCAG
Found at i:14925214 original size:24 final size:21
Alignment explanation
Indices: 14925187--14925230 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
14925177 TGTTTTTGGG
14925187 AATGAATTGAAAATGTGTGTATTA
1 AATGAATT--AAATGTGT-TATTA
*
14925211 AATGAGTTAAATGTGTTATT
1 AATGAATTAAATGTGTTATT
14925231 TTATATCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
24 7 0.37
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (21 bp):
AATGAATTAAATGTGTTATTA
Found at i:14927505 original size:15 final size:16
Alignment explanation
Indices: 14927473--14927506 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14927463 ATTTCATCTC
14927473 ATTTGCATATAGGTTA
1 ATTTGCATATAGGTTA
*
14927489 ATTTGCATCTA-GTTA
1 ATTTGCATATAGGTTA
14927504 ATT
1 ATT
14927507 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (16 bp):
ATTTGCATATAGGTTA
Found at i:14930085 original size:22 final size:21
Alignment explanation
Indices: 14930045--14930085 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14930035 AATCTTTTAA
* *
14930045 AAATAAATATTTATTTTTATC
1 AAATAAATAATTATATTTATC
14930066 AAATAACATAATTATATTTA
1 AAATAA-ATAATTATATTTA
14930086 GTACTTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
AAATAAATAATTATATTTATC
Found at i:14931508 original size:36 final size:36
Alignment explanation
Indices: 14931461--14931533 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
14931451 CTTCCTCGGT
*
14931461 GCAACACGAATCAATTGGTGTCTCATCATTTTTTTG
1 GCAACACGAATCAATTAGTGTCTCATCATTTTTTTG
*
14931497 GCAACACGAATCAATTAGTGTCTCGTCATTTTTTTG
1 GCAACACGAATCAATTAGTGTCTCATCATTTTTTTG
14931533 G
1 G
14931534 ACTCCTAGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (36 bp):
GCAACACGAATCAATTAGTGTCTCATCATTTTTTTG
Found at i:14932270 original size:18 final size:20
Alignment explanation
Indices: 14932249--14932298 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
14932239 AAAGGAAGAC
*
14932249 AGAAAAAGA-AATTAAAAA-
1 AGAAAAAGAGAATGAAAAAG
14932267 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATGAAAAAG
14932287 AGCAAAAAGAGA
1 AG-AAAAAGAGA
14932299 TTGAGATTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.72, C:0.02, G:0.20, T:0.06
Consensus pattern (20 bp):
AGAAAAAGAGAATGAAAAAG
Found at i:14935660 original size:4 final size:4
Alignment explanation
Indices: 14935651--14935683 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
14935641 TGAACTTCAT
14935651 TTAA TTAA TTAA TTAA TTAA TTAA TTAA -TAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
14935684 CAAAAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:14941077 original size:14 final size:14
Alignment explanation
Indices: 14941060--14941088 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14941050 ACCTCGACGA
14941060 GTAAACGTAGATAT
1 GTAAACGTAGATAT
14941074 GTAAACGTAGATAT
1 GTAAACGTAGATAT
14941088 G
1 G
14941089 GAGGCGACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (14 bp):
GTAAACGTAGATAT
Found at i:14942376 original size:12 final size:12
Alignment explanation
Indices: 14942359--14942386 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14942349 CATAGATATG
14942359 TGAAAGACATTA
1 TGAAAGACATTA
14942371 TGAAAGACATTA
1 TGAAAGACATTA
14942383 TGAA
1 TGAA
14942387 TCTTTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.25
Consensus pattern (12 bp):
TGAAAGACATTA
Found at i:14951536 original size:14 final size:13
Alignment explanation
Indices: 14951513--14951550 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
14951503 TGGCAGTTAT
14951513 AGAT-AGCAGAATC
1 AGATAAGCAGAA-C
14951526 AGATAAGCAGAAC
1 AGATAAGCAGAAC
*
14951539 AGATATGCAGAA
1 AGATAAGCAGAA
14951551 ACCTACCCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.50, C:0.13, G:0.24, T:0.13
Consensus pattern (13 bp):
AGATAAGCAGAAC
Found at i:14963357 original size:26 final size:26
Alignment explanation
Indices: 14963321--14963382 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
14963311 TACCTACAAT
14963321 AGTTTCAGAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
14963347 AGGTTT-AGAATATCATAGCATGTATC
1 A-GTTTCAGAATATCATAACATATATC
14963373 AGTTTCAGAA
1 AGTTTCAGAA
14963383 CACTTACAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 4 0.12
26 24 0.75
27 4 0.12
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.34
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:14965416 original size:51 final size:51
Alignment explanation
Indices: 14965339--14965442 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
14965329 AGCAAAGGGG
* *
14965339 AAGCCATGGTTAGGGTTTTCAGGCTTCCAAGCTCGATTGTAAGTCTGTTCT
1 AAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCT
14965390 AAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCT
1 AAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCT
14965441 AA
1 AA
14965443 CCCCGTTTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (51 bp):
AAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCT
Found at i:14966229 original size:51 final size:52
Alignment explanation
Indices: 14966056--14966246 Score: 173
Period size: 51 Copynumber: 3.8 Consensus size: 52
14966046 TAAAAGTGAA
* * *
14966056 AGTGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CTTGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTATC-GGAT
* * * * *
14966106 A-AGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGAAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTATCGGAT
* * * * *
14966157 AGCT--TCA-ATCACGTGTTTAGTACTATGTGCAGGCAACTAAATGTATCGGAT
1 AG-TGAT-AGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTATCGGAT
*
14966208 AGTGAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
14966247 TGTGAACTGG
Statistics
Matches: 110, Mismatches: 22, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
49 3 0.03
50 38 0.35
51 67 0.61
52 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTATCGGAT
Found at i:14966247 original size:102 final size:101
Alignment explanation
Indices: 14966064--14966248 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 101
14966054 AAAGTGATGG
* ** * *
14966064 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTTGAAAGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGTACTGGAAAGATAGGTCACATGTGTAGTAC
14966129 TATGTGCAGGCTACTATGCGTATCGAATAGCTTCAA
66 TATGTGCAGGCTACTATGCGTATCGAATAGCTTCAA
* *
14966165 TCACGTGTTTAGTACTATGTGCAGGCAACTAAATGTA-TCGGATAG-TGATGGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGTACT-GGAAAGAT-A-GGTCACATGTGTAG
*
14966228 TACTATGTGTAGGCTACTATG
63 TACTATGTGCAGGCTACTATG
14966249 TGAACTGGTA
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
100 2 0.03
101 38 0.52
102 33 0.45
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGTACTGGAAAGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTATCGAATAGCTTCAA
Found at i:14966520 original size:37 final size:38
Alignment explanation
Indices: 14966451--14966523 Score: 112
Period size: 37 Copynumber: 1.9 Consensus size: 38
14966441 ATGTGTGGAA
* *
14966451 TTGAATTGAATATTGACTTGAAAATGACAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
14966489 TTGAATTGAATAGTGAC-TGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
14966524 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 16 0.50
38 16 0.50
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:14973248 original size:24 final size:24
Alignment explanation
Indices: 14973199--14973248 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
14973189 TTTTGGTTTT
*
14973199 TAAAAACTTAATTTATTATTTGTA
1 TAAAAACTTAATTTATTATTTATA
* *
14973223 TAAAAGCTTCATTTGATT-TTTATA
1 TAAAAACTTAATTT-ATTATTTATA
14973247 TA
1 TA
14973249 TATTTTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (24 bp):
TAAAAACTTAATTTATTATTTATA
Found at i:14975003 original size:41 final size:40
Alignment explanation
Indices: 14974878--14975004 Score: 146
Period size: 41 Copynumber: 3.1 Consensus size: 40
14974868 TGAGGCTTTG
* * **
14974878 GGGACTTTAGTGGCGTTTTTCAAAAAGCGCCTCTAATGCTAG
1 GGGA-TTTAGCGGCGTTTTTC-AAAAGCGCCGCTAATGCTCT
* * *
14974920 GGGATTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGATCT
1 GGGATTTAGCGGCGTTTTTCAA-AAGCGCCGCTAATGCTCT
*
14974961 GGGATTTAGCGGCGTTTTTTAGAAAGCGCCGCTAATGCTCT
1 GGGATTTAGCGGCGTTTTTCA-AAAGCGCCGCTAATGCTCT
14975002 GGG
1 GGG
14975005 CGGCATTTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.03
41 66 0.90
42 5 0.07
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (40 bp):
GGGATTTAGCGGCGTTTTTCAAAAGCGCCGCTAATGCTCT
Found at i:14975107 original size:103 final size:103
Alignment explanation
Indices: 14974929--14975206 Score: 405
Period size: 103 Copynumber: 2.7 Consensus size: 103
14974919 GGGGATTTAG
* * * * *
14974929 CGGCGTTTTTGAAG-AAGCGCTGCTAATGATCTGGGATTTAGCGGCGTTTTTTAGAAAGCGCCGC
1 CGGCGTTTTTGAAGAAAGTGCCGCTATTGCTCTGGGCTTTAGCGGCGTTTTTTAGAAAGCGCCGC
14974993 TAATGCTCTGGGCGGCATTTTTTAGAAAGCAAAATTAA
66 TAATGCTCTGGGCGGCATTTTTTAGAAAGCAAAATTAA
** *
14975031 CGGCGTTTTTGAAGAAAGTGCCGCTATTGCTCTGGGCTTTAGTAGCATTTTTTAGAAAGCGCCGC
1 CGGCGTTTTTGAAGAAAGTGCCGCTATTGCTCTGGGCTTTAGCGGCGTTTTTTAGAAAGCGCCGC
* * *
14975096 TAATTCTCTGGGCGGCGTTTTTTAGAAAGCAGAATTAA
66 TAATGCTCTGGGCGGCATTTTTTAGAAAGCAAAATTAA
* * * * *
14975134 CGGCATTTTTGAAGAAAGTTCCGCTATTGCTCTGGGCTTTAACGGCGTTTTTTAGAAAGCGTCGT
1 CGGCGTTTTTGAAGAAAGTGCCGCTATTGCTCTGGGCTTTAGCGGCGTTTTTTAGAAAGCGCCGC
14975199 TAATGCTC
66 TAATGCTC
14975207 AGGGGCTTTT
Statistics
Matches: 155, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 14 0.09
103 141 0.91
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (103 bp):
CGGCGTTTTTGAAGAAAGTGCCGCTATTGCTCTGGGCTTTAGCGGCGTTTTTTAGAAAGCGCCGC
TAATGCTCTGGGCGGCATTTTTTAGAAAGCAAAATTAA
Found at i:14975584 original size:21 final size:21
Alignment explanation
Indices: 14975560--14975600 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14975550 TAGGGCTTGA
* * *
14975560 TGTTTATGTTTTACGGTTTAG
1 TGTTAATGATTTAAGGTTTAG
14975581 TGTTAATGATTTAAGGTTTA
1 TGTTAATGATTTAAGGTTTA
14975601 CAATGCATGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (21 bp):
TGTTAATGATTTAAGGTTTAG
Found at i:14975645 original size:7 final size:7
Alignment explanation
Indices: 14975609--14975648 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
14975599 TACAATGCAT
14975609 GGTTTTG
1 GGTTTTG
*
14975616 GATTTTG
1 GGTTTTG
*
14975623 GATTTTG
1 GGTTTTG
14975630 GGTTTTG
1 GGTTTTG
14975637 GGTTTTG
1 GGTTTTG
14975644 GGTTT
1 GGTTT
14975649 AGTGTTACGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.05, C:0.00, G:0.38, T:0.57
Consensus pattern (7 bp):
GGTTTTG
Found at i:14977005 original size:31 final size:31
Alignment explanation
Indices: 14976927--14977005 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
14976917 TTGGATTTTA
*
14976927 ATTGGTTTTTGCA-CTAAGATGGTACCTTCT
1 ATTGGTTTTTGCAGCTAAGATGGTACATTCT
* **
14976957 ACTGGTTTTTGTTGCTAAGATGGTACATTCT
1 ATTGGTTTTTGCAGCTAAGATGGTACATTCT
*
14976988 ATTGATTTTTGCAGCTAA
1 ATTGGTTTTTGCAGCTAA
14977006 ATCAACCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 10 0.25
31 30 0.75
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.44
Consensus pattern (31 bp):
ATTGGTTTTTGCAGCTAAGATGGTACATTCT
Found at i:14978820 original size:43 final size:43
Alignment explanation
Indices: 14978704--14978845 Score: 180
Period size: 43 Copynumber: 3.3 Consensus size: 43
14978694 TTTTTATGAC
* *
14978704 CTTTAGCT-GCGTTTGTGGGTAAAGTGCCACTAAAGATCATGTT
1 CTTTAG-TGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTT
* * *
14978747 CTTT-GCGGCGTTTGTGGGTAAAGCGTCGCTAAAGATGATGTT
1 CTTTAGTGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTT
* * *
14978789 CTTTAGTGGCGTTTGTGGGTAAAACGCCGCTAAAGAACATGAT
1 CTTTAGTGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTT
*
14978832 CTTTAGTGGAGTTT
1 CTTTAGTGGCGTTT
14978846 TTTCTCATAA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 36 0.42
43 49 0.58
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (43 bp):
CTTTAGTGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTT
Found at i:14979276 original size:39 final size:40
Alignment explanation
Indices: 14979175--14979276 Score: 111
Period size: 39 Copynumber: 2.6 Consensus size: 40
14979165 TGCACTCCAT
*
14979175 GCCTCATCAGTATAAACTGAAGTATATACATGTGCCTCGC
1 GCCTCATCAGTATAAACCGAAGTATATACATGTGCCTCGC
* * * *
14979215 ACCTCAT-ATGTA-AATCCGAAGTATA-ACATGTGCTTTGC
1 GCCTCATCA-GTATAAACCGAAGTATATACATGTGCCTCGC
* *
14979253 GCCTCATCGGTATAAACCAAAGTA
1 GCCTCATCAGTATAAACCGAAGTA
14979277 AAATCTTGTA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
38 20 0.40
39 21 0.42
40 9 0.18
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
GCCTCATCAGTATAAACCGAAGTATATACATGTGCCTCGC
Found at i:14982145 original size:174 final size:174
Alignment explanation
Indices: 14981854--14982198 Score: 663
Period size: 174 Copynumber: 2.0 Consensus size: 174
14981844 TATTTTGTTT
14981854 TTTTTACATTATTTTTTCTTTGTTGTTGCGTCTACTTGTTGGCTTTGCAGGTGCCCGTGGCCGAC
1 TTTTTACATTATTTTTTCTTTGTTGTTGCGTCTACTTGTTGGCTTTGCAGGTGCCCGTGGCCGAC
14981919 AGTGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCTGGAGGCGTGACAGACGAGGAGGCCACGTA
66 AGTGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCTGGAGGCGTGACAGACGAGGAGGCCACGTA
* *
14981984 AGGCATGCGGCGGCTAGCTAGGGTTTGCTGTTGAAATTTTAAGG
131 AGGCATGCGGCGGCCAGCTAGGGTTTGCTGCTGAAATTTTAAGG
14982028 TTTTTACATTATTTTTTCTTTGTTGTTGCGTCTACTTGTTGGCTTTGCAGGTGCCCGTGGCCGAC
1 TTTTTACATTATTTTTTCTTTGTTGTTGCGTCTACTTGTTGGCTTTGCAGGTGCCCGTGGCCGAC
*
14982093 AGTGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCTGGAGGCGTGGCAGACGAGGAGGCCACGTA
66 AGTGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCTGGAGGCGTGACAGACGAGGAGGCCACGTA
14982158 AGGCATGCGGCGGCCAGCTAGGGTTTGCTGCTGAAATTTTA
131 AGGCATGCGGCGGCCAGCTAGGGTTTGCTGCTGAAATTTTA
14982199 TGTTTGTGGG
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 168 1.00
ACGTcount: A:0.16, C:0.18, G:0.37, T:0.30
Consensus pattern (174 bp):
TTTTTACATTATTTTTTCTTTGTTGTTGCGTCTACTTGTTGGCTTTGCAGGTGCCCGTGGCCGAC
AGTGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCTGGAGGCGTGACAGACGAGGAGGCCACGTA
AGGCATGCGGCGGCCAGCTAGGGTTTGCTGCTGAAATTTTAAGG
Found at i:14982646 original size:82 final size:82
Alignment explanation
Indices: 14982546--14983028 Score: 869
Period size: 82 Copynumber: 5.9 Consensus size: 82
14982536 GTGTTTTTAG
* * ** * * *
14982546 TCTGCTCCGCTACTGCTTAGGGAGATAATTCTGGATGTGATCTACTCCACTACTGCTTAAGGGA-
1 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTT-AGGGAG
*
14982610 ATAAGATCTGTGGTTCTG
65 ATAAGATCTGTGGTTCTA
*
14982628 TCTGCTCCACTATTGCTTAGGGAGGTAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
14982693 TAAGATCTGTGGTTCTA
66 TAAGATCTGTGGTTCTA
14982710 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
14982775 TAAGATCTGTGGTTCTA
66 TAAGATCTGTGGTTCTA
14982792 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
14982857 TAAGATCTGTGGTTCTA
66 TAAGATCTGTGGTTCTA
14982874 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
14982939 TAAGATCTGTGGTTCTA
66 TAAGATCTGTGGTTCTA
14982956 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
14983021 TAAGATCT
66 TAAGATCT
14983029 ATAATCTTCA
Statistics
Matches: 390, Mismatches: 10, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
81 5 0.01
82 385 0.99
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (82 bp):
TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTGTGGTTCTA
Found at i:14983284 original size:44 final size:45
Alignment explanation
Indices: 14983215--14983720 Score: 462
Period size: 44 Copynumber: 11.5 Consensus size: 45
14983205 CTTCGCTGTT
* * *
14983215 AATACAGGAAGGCAAGATCTG-TATCTTCGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * *
14983258 AATATAGGAAGACAGGACCTACTATCTTCGATCTACTTCAC-GCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * * * *
14983302 AATACATGAAGACAAGATCTACTCTCTTCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * * *
14983347 AGTATGGGAAGACAAGATCTGC-ATCTTAGAT-TCATTTC-CTACA
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCT-ACTTCACTACC
* *
14983390 AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCAC-GCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * * * *
14983434 AATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* *
14983479 AATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * * *
14983522 AATATAGGAAGATAGGACCTGCTATCTTCGATCCACTTCAC-GCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * * * * *
14983566 AAAACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * *
14983611 AGTATGGGAAGACAAGATCTGC-ATATTCGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* * * *
14983654 AATATAGGAAGATAAGACCGGCTATCTTCGATCTACTTCA-TGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
* *
14983698 AATACATGAAGACAAGATCTGCT
1 AATATAGGAAGACAAGATCTGCT
14983721 TCAATGACTC
Statistics
Matches: 366, Mismatches: 84, Indels: 25
0.77 0.18 0.05
Matches are distributed among these distances:
43 82 0.22
44 223 0.61
45 61 0.17
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (45 bp):
AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTACC
Found at i:14983431 original size:132 final size:132
Alignment explanation
Indices: 14983221--14983717 Score: 832
Period size: 132 Copynumber: 3.8 Consensus size: 132
14983211 TGTTAATACA
* * *
14983221 GGAAGGCAAGATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTACTATCTT
1 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTT
*
14983286 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTCTCTTCGATCTACTTCGCCACCAGTA
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
14983351 TG
131 TG
* * * * *
14983353 GGAAGACAAGATCTGCATCTTAGATTCATTTCCTACAAATATAGGAAGACAGGATCTGCTATCTT
1 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTT
*
14983418 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAATA
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
14983483 TG
131 TG
*
14983485 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTT
1 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTT
* *
14983550 CGATCCACTTCACGCCAAAACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
14983615 TG
131 TG
* * * *
14983617 GGAAGACAAGATCTGCATATTCGATCCACTTCCTACCAATATAGGAAGATAAGACCGGCTATCTT
1 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTT
*
14983682 CGATCTACTTCATGCCAATACATGAAGACAAGATCT
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCT
14983718 GCTTCAATGA
Statistics
Matches: 340, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 340 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
TG
Found at i:14984748 original size:6 final size:6
Alignment explanation
Indices: 14984737--14984801 Score: 60
Period size: 6 Copynumber: 10.0 Consensus size: 6
14984727 TTGGCCTCTC
*
14984737 CTTTTT CTTTTT CTTTTT CTTTTT TTCTTTT CTTTTTT CATTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT CTTTTT
14984789 -TATTTT CATTTTT
1 CT-TTTT C-TTTTT
14984802 TTCAAGTGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
5 1 0.02
6 28 0.55
7 13 0.25
8 9 0.18
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:14984761 original size:20 final size:20
Alignment explanation
Indices: 14984738--14984804 Score: 84
Period size: 20 Copynumber: 3.3 Consensus size: 20
14984728 TGGCCTCTCC
14984738 TTTTTCTTTTTCTTTTTCTT
1 TTTTTCTTTTTCTTTTTCTT
*
14984758 TTTTTC-TTTTCTTTTTTCAT
1 TTTTTCTTTTTC-TTTTTCTT
14984778 TTTTTCTTTTT-TATTTTCATT
1 TTTTTCTTTTTCT-TTTTC-TT
14984799 TTTTTC
1 TTTTTC
14984805 AAGTGAAGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 6 0.15
20 24 0.59
21 11 0.27
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTCTTTTTCTTTTTCTT
Found at i:14984763 original size:8 final size:7
Alignment explanation
Indices: 14984738--14984794 Score: 66
Period size: 7 Copynumber: 8.4 Consensus size: 7
14984728 TGGCCTCTCC
14984738 TTTTTC-
1 TTTTTCT
14984744 TTTTTC-
1 TTTTTCT
14984750 TTTTTCT
1 TTTTTCT
14984757 TTTTT-T
1 TTTTTCT
*
14984763 CTTTTCT
1 TTTTTCT
14984770 TTTTTCAT
1 TTTTTC-T
14984778 TTTTTCT
1 TTTTTCT
*
14984785 TTTTTAT
1 TTTTTCT
14984792 TTT
1 TTT
14984795 CATTTTTTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
6 17 0.38
7 21 0.47
8 7 0.16
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:14984793 original size:14 final size:13
Alignment explanation
Indices: 14984738--14984803 Score: 64
Period size: 13 Copynumber: 5.0 Consensus size: 13
14984728 TGGCCTCTCC
*
14984738 TTTTTC-TTTTTC
1 TTTTTCTTTTTTT
14984750 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
*
14984763 CTTTTCTTTTTTCAT
1 TTTTTCTTTTTT--T
14984778 TTTTTC-TTTTTT
1 TTTTTCTTTTTTT
*
14984790 ATTTTCATTTTTTT
1 TTTTTC-TTTTTTT
14984804 CAAGTGAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 12 0.27
13 16 0.36
14 11 0.24
15 6 0.13
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:14985265 original size:13 final size:13
Alignment explanation
Indices: 14985230--14985273 Score: 65
Period size: 12 Copynumber: 3.5 Consensus size: 13
14985220 CCGGTAGAGG
14985230 TTTTTTTCTTG-T
1 TTTTTTTCTTGCT
*
14985242 TTTTGTT-TTGCT
1 TTTTTTTCTTGCT
14985254 TTTTTTTCTTGCT
1 TTTTTTTCTTGCT
14985267 TTTTTTT
1 TTTTTTT
14985274 GTTTTTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 3 0.11
12 13 0.46
13 12 0.43
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.82
Consensus pattern (13 bp):
TTTTTTTCTTGCT
Found at i:14986662 original size:62 final size:62
Alignment explanation
Indices: 14986560--14986684 Score: 207
Period size: 62 Copynumber: 2.0 Consensus size: 62
14986550 CTAAACTCGA
*
14986560 CGTACTTTTGGATTTTAGGAAATTTATAGTATGCAATGAAATGTAATGTTGATGCATGAATG
1 CGTACTTTTGGATTTTAGGAAATTTATAGTATGCAATGAAATGTAATGTTAATGCATGAATG
* *
14986622 CGTATTTTTGGATTTTAGGAAATTTATTA-TATGTAATGAAATGTAATGTTAATGCATGAATG
1 CGTACTTTTGGATTTTAGGAAATTTA-TAGTATGCAATGAAATGTAATGTTAATGCATGAATG
14986684 C
1 C
14986685 AAAAAAAAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 57 0.97
63 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.41
Consensus pattern (62 bp):
CGTACTTTTGGATTTTAGGAAATTTATAGTATGCAATGAAATGTAATGTTAATGCATGAATG
Found at i:14988379 original size:107 final size:107
Alignment explanation
Indices: 14988193--14988403 Score: 341
Period size: 107 Copynumber: 2.0 Consensus size: 107
14988183 CCATACTTTG
* * * *
14988193 AAGTTTTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGACACCCAGCACGTTAGGGCAC
1 AAGTTTAAAAAGGATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
*
14988258 GTTTCCTCGATTTTCCAAACGCGAAGTATTGCCTTATTTTAA
66 GTTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTTTAA
*
14988300 AAGTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
1 AAGTTTAAAAAGGATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
* * *
14988365 GTTTTCTCGATTTTCCAAACGTGAAATATTGTCTTATTT
66 GTTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTT
14988404 AGAAAAAACT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 95 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (107 bp):
AAGTTTAAAAAGGATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCAC
GTTTCCTCGATTTTCCAAACGCGAAATATTGCCTTATTTTAA
Found at i:14988739 original size:26 final size:26
Alignment explanation
Indices: 14988680--14988739 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
14988670 GGCCATGAAA
*
14988680 ATAAGAAATGCATATAAATTATAGAGT
1 ATAA-AAATGCATATAAATTATACAGT
* *
14988707 ATGAAAATGTATATAAATATATACA-T
1 ATAAAAATGCATATAAAT-TATACAGT
14988733 ATAAAAA
1 ATAAAAA
14988740 AATCTGTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (26 bp):
ATAAAAATGCATATAAATTATACAGT
Found at i:14990401 original size:14 final size:14
Alignment explanation
Indices: 14990382--14990462 Score: 51
Period size: 14 Copynumber: 5.6 Consensus size: 14
14990372 AGCGGTGGCA
14990382 GAGGCGTGCGAGTG
1 GAGGCGTGCGAGTG
14990396 GAGGCGTG-G-GCTG
1 GAGGCGTGCGAG-TG
*
14990409 GAGGCGTGCCACGT-
1 GAGGCGTGCGA-GTG
* * *
14990423 AAGGCATGCGCGGTGG
1 GAGGCGTGCG-AGT-G
14990439 CAGAGGCGTGCGAGTG
1 --GAGGCGTGCGAGTG
14990455 GAGGCGTG
1 GAGGCGTG
14990463 GCAAACGAGG
Statistics
Matches: 50, Mismatches: 8, Indels: 18
0.66 0.11 0.24
Matches are distributed among these distances:
12 1 0.02
13 11 0.22
14 25 0.50
15 1 0.02
16 2 0.04
17 2 0.04
18 8 0.16
ACGTcount: A:0.15, C:0.19, G:0.53, T:0.14
Consensus pattern (14 bp):
GAGGCGTGCGAGTG
Found at i:14990479 original size:59 final size:59
Alignment explanation
Indices: 14990373--14990491 Score: 179
Period size: 59 Copynumber: 2.0 Consensus size: 59
14990363 GTGGCCGACA
** *
14990373 GCGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCTGGAGGCGTGCCACGTAAGGCATGC
1 GCGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCACGAGGAGTGCCACGTAAGGCATGC
14990432 GCGGTGGCAGAGGCGTGCGAGTGGAGGCGT-GGCAAACGAGGAG-GCCACGTAAGGCATGC
1 GCGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGC--ACGAGGAGTGCCACGTAAGGCATGC
14990491 G
1 G
14990492 GAGGCCAGCT
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
58 3 0.05
59 47 0.85
60 5 0.09
ACGTcount: A:0.18, C:0.20, G:0.50, T:0.12
Consensus pattern (59 bp):
GCGGTGGCAGAGGCGTGCGAGTGGAGGCGTGGGCACGAGGAGTGCCACGTAAGGCATGC
Found at i:14998252 original size:22 final size:20
Alignment explanation
Indices: 14998215--14998254 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14998205 AAAAGAAGTC
*
14998215 CAAAAAAGGATAAATCAAAT
1 CAAAAAAGAATAAATCAAAT
14998235 CAAAAAAGAAATAGAATCAA
1 CAAAAAAG-AATA-AATCAA
14998255 CAATTTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.68, C:0.10, G:0.10, T:0.12
Consensus pattern (20 bp):
CAAAAAAGAATAAATCAAAT
Found at i:15001112 original size:57 final size:58
Alignment explanation
Indices: 15001045--15001208 Score: 208
Period size: 57 Copynumber: 2.9 Consensus size: 58
15001035 TGAATGAAAA
** * ** *
15001045 TGAACAGGAAATATTCTCTGGCAAGAACAGTAAATATTCTCT--TTAGAAAAAGATGAG
1 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAG-AAAAGACGAG
15001102 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAAAAGACGAG
1 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAAAAGACGAG
* * * *
15001160 TGAACA-GAAATATTCTCTAGCGTGAATAGTAAATATTCCTTGGCAAGAA
1 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAA
15001209 CAGTAGAAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
57 78 0.82
58 15 0.16
59 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (58 bp):
TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAAAAGACGAG
Found at i:15001524 original size:23 final size:23
Alignment explanation
Indices: 15001497--15001551 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
15001487 TAGAGATTTC
* **
15001497 TACTGTTCTTGCCAGGGAATATT
1 TACTGTTCATGCCAAAGAATATT
15001520 TACTGTTCATGCCAAAGAATATT
1 TACTGTTCATGCCAAAGAATATT
*
15001543 TCCTGTTCA
1 TACTGTTCA
15001552 CTCGTCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (23 bp):
TACTGTTCATGCCAAAGAATATT
Found at i:15001597 original size:58 final size:57
Alignment explanation
Indices: 15001502--15001666 Score: 233
Period size: 58 Copynumber: 2.9 Consensus size: 57
15001492 ATTTCTACTG
* * *
15001502 TTCTTGCCAGGGAATATTTACTGTTCATGCCAAAGAATATTTCCTGTTCACTCGTCTT
1 TTCTTGCCAGGGAATATTTATTGTTTA-GCCAAAGAATATTTCCTGTTCACTAGTCTT
* *
15001560 TTCTTGCCAGGGAATATTTATTGTTTACGCCAGAGAATATTTCATGTTCACTAGTCTT
1 TTCTTGCCAGGGAATATTTATTGTTTA-GCCAAAGAATATTTCCTGTTCACTAGTCTT
* *
15001618 TTCTTG-CAGGGAATATTTATTGTTCTAGCCAAAGAATATTCCCTATTCA
1 TTCTTGCCAGGGAATATTTATTGTT-TAGCCAAAGAATATTTCCTGTTCA
15001667 TCTCTAAAGA
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
57 36 0.38
58 60 0.62
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (57 bp):
TTCTTGCCAGGGAATATTTATTGTTTAGCCAAAGAATATTTCCTGTTCACTAGTCTT
Found at i:15010727 original size:44 final size:44
Alignment explanation
Indices: 15010677--15010764 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
15010667 ACCGAATCTT
15010677 GCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACC
1 GCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACC
15010721 GCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACC
1 GCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACC
15010765 AATTTCGGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.18
Consensus pattern (44 bp):
GCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACC
Found at i:15015244 original size:76 final size:76
Alignment explanation
Indices: 15015118--15015271 Score: 308
Period size: 76 Copynumber: 2.0 Consensus size: 76
15015108 CAGAATTCAA
15015118 GAATCAAATACTTCATTTTCATAATAAAAATAATAAATTTATTTTTAAACAAAAATAAAATAGAA
1 GAATCAAATACTTCATTTTCATAATAAAAATAATAAATTTATTTTTAAACAAAAATAAAATAGAA
15015183 CAATGCAAAAT
66 CAATGCAAAAT
15015194 GAATCAAATACTTCATTTTCATAATAAAAATAATAAATTTATTTTTAAACAAAAATAAAATAGAA
1 GAATCAAATACTTCATTTTCATAATAAAAATAATAAATTTATTTTTAAACAAAAATAAAATAGAA
15015259 CAATGCAAAAT
66 CAATGCAAAAT
15015270 GA
1 GA
15015272 GAGATAAAAG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.31
Consensus pattern (76 bp):
GAATCAAATACTTCATTTTCATAATAAAAATAATAAATTTATTTTTAAACAAAAATAAAATAGAA
CAATGCAAAAT
Found at i:15016845 original size:13 final size:13
Alignment explanation
Indices: 15016827--15016851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15016817 ATTAAAAATG
15016827 TTTTAAAATTTAT
1 TTTTAAAATTTAT
15016840 TTTTAAAATTTA
1 TTTTAAAATTTA
15016852 AAATGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAAATTTAT
Found at i:15016862 original size:30 final size:33
Alignment explanation
Indices: 15016812--15016872 Score: 92
Period size: 30 Copynumber: 1.9 Consensus size: 33
15016802 AATTAAAATA
*
15016812 AAAATATTAAAAATGTTTTAAAA-TTTATTTTT
1 AAAATATTAAAAATGATTTAAAATTTTATTTTT
15016844 AAAAT-TT-AAAATGATTTAAAATTTTATTT
1 AAAATATTAAAAATGATTTAAAATTTTATTT
15016873 CAAATTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 13 0.48
31 9 0.33
32 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (33 bp):
AAAATATTAAAAATGATTTAAAATTTTATTTTT
Found at i:15017462 original size:40 final size:40
Alignment explanation
Indices: 15017416--15017522 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
15017406 ATTTGGATAC
* *
15017416 AAAACGCCGCTAAAGATCGAGCATTAGCGGTGCTTTTTGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTATGG
15017456 AAAACGCCGCTAAAGATCGAG-ATTTAGCGGCGCTTTATGG
1 AAAACGCCGCTAAAGATCGAGCA-TTAGCGGCGCTTTATGG
* * *
15017496 AAATCGCCGCTAAAAAT-AAGCATTAGC
1 AAAACGCCGCTAAAGATCGAGCATTAGC
15017523 TACGTTTTCA
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 8 0.13
40 52 0.87
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTATGG
Found at i:15017627 original size:41 final size:41
Alignment explanation
Indices: 15017579--15017816 Score: 359
Period size: 41 Copynumber: 5.8 Consensus size: 41
15017569 CTTTCGGGGA
* *
15017579 TTTAGCGGCGTTTTTAAGAAAGCGCTGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
*
15017620 TTCAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* *
15017661 TTTAGCAGCGTTTTTGAGAAAGTGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
*
15017702 TTTAGCGGCGTTTTTGAGAAAGCGTCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
** * * *
15017743 TTTAGCTACGTTTTTGGGAAAGCGCCGCTAATGCTTAAGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* *
15017784 TTTAGCGGTGTTTTTGAGAAAGCGCTGCTAATG
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATG
15017817 TTCTATTCTT
Statistics
Matches: 177, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 177 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:15018122 original size:22 final size:21
Alignment explanation
Indices: 15018097--15018150 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
15018087 GTGTTACCAT
15018097 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTA-GGG
* * *
15018119 TTTAGGGTTTTTGGTTTAGGG
1 TTTAAGGTTTATGGATTAGGG
* *
15018140 TATATGGTTTA
1 TTTAAGGTTTA
15018151 AACAGGTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (21 bp):
TTTAAGGTTTATGGATTAGGG
Found at i:15018136 original size:14 final size:14
Alignment explanation
Indices: 15018117--15018150 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15018107 ATGGATTATG
* *
15018117 GGTTTAGGGTTTTT
1 GGTTTAGGGTATAT
15018131 GGTTTAGGGTATAT
1 GGTTTAGGGTATAT
15018145 GGTTTA
1 GGTTTA
15018151 AACAGGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
GGTTTAGGGTATAT
Found at i:15018139 original size:75 final size:75
Alignment explanation
Indices: 15018042--15018227 Score: 300
Period size: 75 Copynumber: 2.5 Consensus size: 75
15018032 TATCACTATA
* *
15018042 GTTTAGGGTTTTTTTGTTTAGGGTATATGGTTTAAATAGGTTTAGGTGTTACCATTTTAAGGTTT
1 GTTTAGGG-TTTTTGGTTTAGGGTATATGGTTTAAACAGGTTTAGGTGTTACCATTTTAAGGTTT
15018107 ATGGATTATGG
65 ATGGATTATGG
*
15018118 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAACAGGTTTAGGTGTTGCCATTTTAAGGTTTA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAACAGGTTTAGGTGTTACCATTTTAAGGTTTA
15018183 TGGATTATGG
66 TGGATTATGG
* * * *
15018193 GTTTAGGGATTATGGTTTATGGTTTATGGTTTAAA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAA
15018228 GGTTGGGGTT
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
75 95 0.92
76 8 0.08
ACGTcount: A:0.21, C:0.03, G:0.29, T:0.47
Consensus pattern (75 bp):
GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAACAGGTTTAGGTGTTACCATTTTAAGGTTTA
TGGATTATGG
Found at i:15018269 original size:15 final size:15
Alignment explanation
Indices: 15018233--15018326 Score: 56
Period size: 15 Copynumber: 6.5 Consensus size: 15
15018223 TTAAAGGTTG
*
15018233 GGGTTTAAGGTTT-A
1 GGGTTTATGGTTTAA
15018247 GAGG-TTAT-GTGTTAA
1 G-GGTTTATGGT-TTAA
*
15018262 GGGTTTATGGTTTTA
1 GGGTTTATGGTTTAA
* *
15018277 GGGTTTAAGGTTTTA
1 GGGTTTATGGTTTAA
* *
15018292 GTGTTTTAGGGTTTAA
1 G-GGTTTATGGTTTAA
*
15018308 --ATTTATGGTTT-A
1 GGGTTTATGGTTTAA
15018320 GGGTTTA
1 GGGTTTA
15018327 GATTAACTAG
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
12 1 0.02
13 11 0.17
14 12 0.19
15 26 0.41
16 13 0.21
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (15 bp):
GGGTTTATGGTTTAA
Found at i:15018327 original size:7 final size:7
Alignment explanation
Indices: 15018172--15018327 Score: 66
Period size: 7 Copynumber: 21.7 Consensus size: 7
15018162 GTGTTGCCAT
*
15018172 TTTAAGG
1 TTTAGGG
*
15018179 TTTATGG
1 TTTAGGG
*
15018186 ATTATGGG
1 TTTA-GGG
15018194 TTTAGGG
1 TTTAGGG
* *
15018201 ATTATGG
1 TTTAGGG
*
15018208 TTTATGG
1 TTTAGGG
*
15018215 TTTATGG
1 TTTAGGG
*
15018222 TTTAAAGG
1 TTT-AGGG
*
15018230 -TTGGGG
1 TTTAGGG
*
15018236 TTTAAGG
1 TTTAGGG
15018243 TTTAGAGG
1 TTTAG-GG
*
15018251 -TTATGTG
1 TTTA-GGG
*
15018258 TTAAGGG
1 TTTAGGG
*
15018265 TTTATGGT
1 TTTA-GGG
15018273 TTTAGGG
1 TTTAGGG
*
15018280 TTTAAGGT
1 TTT-AGGG
*
15018288 TTTAGTGT
1 TTTAG-GG
15018296 TTTAGGG
1 TTTAGGG
**
15018303 TTTA-AA
1 TTTAGGG
*
15018309 TTTATGG
1 TTTAGGG
15018316 TTTAGGG
1 TTTAGGG
15018323 TTTAG
1 TTTAG
15018328 ATTAACTAGT
Statistics
Matches: 113, Mismatches: 26, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
6 6 0.05
7 75 0.66
8 32 0.28
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:15022838 original size:43 final size:43
Alignment explanation
Indices: 15022777--15022867 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
15022767 CTTTGACTTC
* *
15022777 ATTA-CAAGATTTCTTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTCTTTGATTAAGAAAATGCATTATATCTTTT
* *
15022819 ATTACCAAGATTTAC-TTGATTAAGAAAATGCATTGTATTTTTT
1 ATTACCAAGATTT-CTTTGATTAAGAAAATGCATTATATCTTTT
15022862 ATTACC
1 ATTACC
15022868 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 4 0.09
43 38 0.88
44 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (43 bp):
ATTACCAAGATTTCTTTGATTAAGAAAATGCATTATATCTTTT
Found at i:15023040 original size:87 final size:87
Alignment explanation
Indices: 15022894--15023069 Score: 343
Period size: 87 Copynumber: 2.0 Consensus size: 87
15022884 CATAGGCAGG
15022894 TTCAACTAGTCAGTCTGTTTCTCATATGTATTATTTATTTTAGTTTTGATTCTAAATTTTTATTT
1 TTCAACTAGTCAGTCTGTTTCTCATATGTATTATTTATTTTAGTTTTGATTCTAAATTTTTATTT
15022959 TTACTTTAATATTTACGACAAC
66 TTACTTTAATATTTACGACAAC
*
15022981 TTCAACTAGTCTGTCTGTTTCTCATATGTATTATTTATTTTAGTTTTGATTCTAAATTTTTATTT
1 TTCAACTAGTCAGTCTGTTTCTCATATGTATTATTTATTTTAGTTTTGATTCTAAATTTTTATTT
15023046 TTACTTTAATATTTACGACAAC
66 TTACTTTAATATTTACGACAAC
15023068 TT
1 TT
15023070 GAGTTCTAAC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.54
Consensus pattern (87 bp):
TTCAACTAGTCAGTCTGTTTCTCATATGTATTATTTATTTTAGTTTTGATTCTAAATTTTTATTT
TTACTTTAATATTTACGACAAC
Found at i:15023409 original size:43 final size:43
Alignment explanation
Indices: 15023335--15023619 Score: 351
Period size: 43 Copynumber: 6.7 Consensus size: 43
15023325 CGAGAAGCGT
* * *
15023335 CGCTAAAGGT-TTGTTCTATAGCGGCGCTTGTGGGAAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
* * **
15023377 CACTAAAGGTCTTGAGCTATAGCGGCGTTTGTGAAAAAAGCAC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
* * **
15023420 CGCTAAAGGTCTTGATCTATAGCGACGTTTGTGGAAAAAGCGT
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
* * *
15023463 CGCTAAAGGTCTTGAGCTATAGCGGCGTTTGT-GGTAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
* * *
15023505 CGCTAAAAGTCTTGATCTTTAGCGGCGTTTGT-GTAAAAGCAC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
* * * *
15023547 CGCTAAAGGTCCTGATATATAGTGGCATTTGTGGGAAAAGCAC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
*
15023590 CGCTAAAGGTCATGATCTATAGCGGCGTTT
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTT
15023620 ATTTCCAAAA
Statistics
Matches: 206, Mismatches: 35, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
42 78 0.38
43 128 0.62
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (43 bp):
CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCAC
Found at i:15023528 original size:85 final size:85
Alignment explanation
Indices: 15023335--15023619 Score: 367
Period size: 85 Copynumber: 3.4 Consensus size: 85
15023325 CGAGAAGCGT
* * * *
15023335 CGCTAAAGGT-TTGTTCTATAGCGGCGCTTGTGGGAAAAGCGCCACTAAAGGTCTTGAGCTATAG
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAG
*
15023399 CGGCGTTTGTGAAAAAAGCAC
66 CGGCGTTTGTG-GAAAAGCAC
* *
15023420 CGCTAAAGGTCTTGATCTATAGCGACGTTTGTGGAAAAAGCGTCGCTAAAGGTCTTGAGCTATAG
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAG
* *
15023485 CGGCGTTTGTGGTAAAGCGC
66 CGGCGTTTGTGGAAAAGCAC
* * * * * **
15023505 CGCTAAAAGTCTTGATCTTTAGCGGCGTTTGT-GTAAAAGCACCGCTAAAGGTCCTGATATATAG
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAG
* *
15023569 TGGCATTTGTGGGAAAAGCAC
66 CGGCGTTTGT-GGAAAAGCAC
*
15023590 CGCTAAAGGTCATGATCTATAGCGGCGTTT
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTT
15023620 ATTTCCAAAA
Statistics
Matches: 173, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
84 34 0.20
85 80 0.46
86 59 0.34
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (85 bp):
CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAG
CGGCGTTTGTGGAAAAGCAC
Found at i:15027039 original size:55 final size:53
Alignment explanation
Indices: 15026939--15027147 Score: 145
Period size: 52 Copynumber: 3.8 Consensus size: 53
15026929 ATGCTACGTA
* * *
15026939 ACAATCGATTTAAACATATAAACAATCTATTCAAATTAAGAAGAAGCAGTATTCCACTATA
1 ACAATTGATTTAAACATATAAACAATCGATTC-----AA-AAGAAG-AGTATTCCAC-ATG
* * * *
15027000 ACAATTAATTTAAACATATAAACAATTGATTTC-AAAG-A-AGTATTGCAAAATG
1 ACAATTGATTTAAACATATAAACAATCGA-TTCAAAAGAAGAGTATT-CCACATG
* * *
15027052 ATAGTCGATTTAAACATATAAACAATCGATTCAAAAGAAGTAGTATTCCAACATG
1 ACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAG-AGTATTCC-ACATG
* * * * *
15027107 GCAATTGATTTAAACATAAAAAAGAATTGATCCAAAAGAAG
1 ACAATTGATTTAAACAT-ATAAACAATCGATTCAAAAGAAG
15027148 TAATATTTTT
Statistics
Matches: 118, Mismatches: 22, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
51 3 0.03
52 36 0.31
53 3 0.03
54 2 0.02
55 26 0.22
56 20 0.17
61 25 0.21
62 3 0.03
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (53 bp):
ACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGAGTATTCCACATG
Found at i:15029877 original size:20 final size:20
Alignment explanation
Indices: 15029852--15029909 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
15029842 ACTTCTACGA
15029852 GATTGCACTTCGGTGCCTCT
1 GATTGCACTTCGGTGCCTCT
*
15029872 GATTGCACATT-TGTGCCTCT
1 GATTGCAC-TTCGGTGCCTCT
*
15029892 -ATCTGTACTTCGGTGCCT
1 GAT-TGCACTTCGGTGCCT
15029910 TTATTACATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 4 0.12
20 26 0.81
21 2 0.06
ACGTcount: A:0.12, C:0.28, G:0.22, T:0.38
Consensus pattern (20 bp):
GATTGCACTTCGGTGCCTCT
Found at i:15031318 original size:21 final size:20
Alignment explanation
Indices: 15031290--15031328 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
15031280 TTTGCCATGA
*
15031290 TTAGATTTAATTTTTATATG
1 TTAGATTTAATTTGTATATG
15031310 TTAGCATTTAATTTGTATA
1 TTAG-ATTTAATTTGTATA
15031329 ATTGTTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (20 bp):
TTAGATTTAATTTGTATATG
Found at i:15034855 original size:39 final size:39
Alignment explanation
Indices: 15034811--15034910 Score: 164
Period size: 39 Copynumber: 2.6 Consensus size: 39
15034801 ATTAAAACAT
* *
15034811 ATATTAATGTTGTTCAAACTAAGACATAATAAAAGACAC
1 ATATTAATGATGTTCAAACTAAGACATAATAAAAGACAA
* *
15034850 ATATTAATGATGTTCAAACTAAGACTTAATTAAAGACAA
1 ATATTAATGATGTTCAAACTAAGACATAATAAAAGACAA
15034889 ATATTAATGATGTTCAAACTAA
1 ATATTAATGATGTTCAAACTAA
15034911 ATAACTAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.31
Consensus pattern (39 bp):
ATATTAATGATGTTCAAACTAAGACATAATAAAAGACAA
Found at i:15042671 original size:125 final size:124
Alignment explanation
Indices: 15042479--15043011 Score: 717
Period size: 125 Copynumber: 4.3 Consensus size: 124
15042469 ATTTTTGCAG
* * *
15042479 TCGCGCCCACGTGTATGCGCTTTTGCTACAGTAGGTACTGGAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
* *
15042544 CTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATAT-ACAAATAATTTGTGAAA
66 CTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATGA-GAAGAATTTGTGAAA
* * * * * * * *
15042603 TCGCACCCTCCTGGACGCCCTTTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAATTGACATT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGAGTTGACGTT
* * * *
15042668 TCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAA
65 TCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTGTGAAA
* * * * *
15042728 TCGGGCTCACGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATTATTTCGAGTTGACGTTT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
* *
15042793 CTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATTTGAGAAGAATTTTTGAAA
66 CTGAGCAAATAGTAT-AAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTGTGAAA
* ** * * *
15042853 TCGTGCCCTTGTGGACGTGCTTTTGCTACAGTTGGTCCTGGAATAAATAATTTCGAGTTGATGTT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGAGTTGACGTT
* * *
15042918 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTTTATGAGAAGAATTTGTGAAA
65 TCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTGTGAAA
*
15042978 TCACGCCCACGTGGACGCGCTTTTGCTACAGTAG
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAG
15043012 CATGTTTGGA
Statistics
Matches: 349, Mismatches: 56, Indels: 7
0.85 0.14 0.02
Matches are distributed among these distances:
124 68 0.19
125 245 0.70
126 36 0.10
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (124 bp):
TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
CTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTGTGAAA
Found at i:15042938 original size:250 final size:249
Alignment explanation
Indices: 15042482--15043011 Score: 801
Period size: 250 Copynumber: 2.1 Consensus size: 249
15042472 TTTGCAGTCG
* * * *
15042482 CGCCCACGTGTATGCGCTTTTGCTACAGTAGGTACTGGAAAAATAATTTCGAGTTGACGTTTCTG
1 CGCCCACGTGGACGCACTTTTGCTACAGTAGGTACTGAAAAAATAATTTCGAGTTGACGTTTCTG
*
15042547 AGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATACAAATAATTTGTGAAATCGCACCCT
66 AGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATACAAAGAATTTGTGAAATCGCACCCT
15042612 CCTGGACGCCCTTTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAATTGACATTTCTGAGCAA
131 CCTGGACGCCCTTTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAATTGACATTTCTGAGCAA
*
15042677 ATAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCG
196 ATAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCA
* * * *
15042731 GGCTCACGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATTATTTCGAGTTGACGTTTCTG
1 CGCCCACGTGGACGCACTTTTGCTACAGTAGGTACTGAAAAAATAATTTCGAGTTGACGTTTCTG
* * * **
15042796 AGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATTTGA-GAAGAATTTTTGAAATCGTGCC
66 AGCAAATAGTAT-AAAAACGCTTCAAGCAGGATGCTATAT-ACAAAGAATTTGTGAAATCGCACC
** ** * * * **
15042860 CTTGTGGACGTGCTTTTGCTACAGTTGGTCCTGGAATAAATAATTTCGAGTTGATGTTTCTGAGC
129 CTCCTGGACGCCCTTTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAATTGACATTTCTGAGC
*
15042925 AAATAGTATAAAATCGCTTCTAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCA
194 AAATAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCA
*
15042981 CGCCCACGTGGACGCGCTTTTGCTACAGTAG
1 CGCCCACGTGGACGCACTTTTGCTACAGTAG
15043012 CATGTTTGGA
Statistics
Matches: 251, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
249 69 0.27
250 181 0.72
251 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (249 bp):
CGCCCACGTGGACGCACTTTTGCTACAGTAGGTACTGAAAAAATAATTTCGAGTTGACGTTTCTG
AGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTATATACAAAGAATTTGTGAAATCGCACCCT
CCTGGACGCCCTTTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAATTGACATTTCTGAGCAA
ATAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCA
Found at i:15046145 original size:22 final size:22
Alignment explanation
Indices: 15046117--15046389 Score: 232
Period size: 22 Copynumber: 12.8 Consensus size: 22
15046107 AAGTTAAGGT
*
15046117 TTTAGGGTTTAGGATTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
** *
15046139 TTTAGGGTTTATAGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
15046161 TTTAGGGTTT-GTGGTTTTTAAG
1 TTTAGGGTTTAG-GGTTTTTAAG
* *
15046183 TTTAGGGTTTATGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
**
15046205 TTTAAAGTTT-GTGGTTTTTAAG
1 TTTAGGGTTTAG-GGTTTTTAAG
* *
15046227 TTAAGGG-TTAGGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
15046248 TTTAGGGGTTGGGGTTTTTTAAG
1 TTTAGGGTTTAGGG-TTTTTAAG
15046271 TTTA-----T--GGTTTTTAGA-
1 TTTAGGGTTTAGGGTTTTTA-AG
*
15046286 TTTAGGGTTTAAGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
15046308 TTTAAGGTTTAGGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
15046330 TTTAAGGTTTGGGGTTTTTAA-
1 TTTAGGGTTTAGGGTTTTTAAG
15046351 TTTAAGGG-TTAGGGTTTTT-AG
1 TTT-AGGGTTTAGGGTTTTTAAG
*
15046372 TTTAAGGGTTTATGGTTT
1 TTT-AGGGTTTAGGGTTT
15046390 GTCAATTAAA
Statistics
Matches: 205, Mismatches: 28, Indels: 36
0.76 0.10 0.13
Matches are distributed among these distances:
15 10 0.05
16 3 0.01
18 1 0.00
20 2 0.01
21 39 0.19
22 139 0.68
23 11 0.05
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.52
Consensus pattern (22 bp):
TTTAGGGTTTAGGGTTTTTAAG
Found at i:15046179 original size:44 final size:44
Alignment explanation
Indices: 15046117--15046389 Score: 282
Period size: 44 Copynumber: 6.4 Consensus size: 44
15046107 AAGTTAAGGT
* **
15046117 TTTAGGGTTTAG-GATTTTTAAGTTTAGGGTTTATAGTTTTTAGG
1 TTTAGGGTTT-GTGGTTTTTAAGTTTAGGGTTTAGGGTTTTTAGG
*
15046161 TTTAGGGTTTGTGGTTTTTAAGTTTAGGGTTTATGGTTTTTAGG
1 TTTAGGGTTTGTGGTTTTTAAGTTTAGGGTTTAGGGTTTTTAGG
** *
15046205 TTTAAAGTTTGTGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGG
1 TTTAGGGTTTGTGGTTTTTAAGTTTAGGGTTTAGGGTTTTTAGG
* * *
15046248 TTTAGGGGTTGGGGTTTTTTAAGTTTA-----T--GGTTTTTAGA
1 TTTAGGGTTTGTGG-TTTTTAAGTTTAGGGTTTAGGGTTTTTAGG
** *
15046286 TTTAGGGTTTAAGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGG
1 TTTAGGGTTTGTGGTTTTTAAGTTTAGGGTTTAGGGTTTTTAGG
* *
15046330 TTTAAGGTTTGGGGTTTTTAA-TTTAAGGG-TTAGGGTTTTTA-G
1 TTTAGGGTTTGTGGTTTTTAAGTTT-AGGGTTTAGGGTTTTTAGG
*
15046372 TTTAAGGGTTTATGGTTT
1 TTT-AGGGTTTGTGGTTT
15046390 GTCAATTAAA
Statistics
Matches: 195, Mismatches: 23, Indels: 23
0.81 0.10 0.10
Matches are distributed among these distances:
37 12 0.06
38 20 0.10
40 1 0.01
42 5 0.03
43 50 0.26
44 107 0.55
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.52
Consensus pattern (44 bp):
TTTAGGGTTTGTGGTTTTTAAGTTTAGGGTTTAGGGTTTTTAGG
Found at i:15046317 original size:125 final size:124
Alignment explanation
Indices: 15046145--15046381 Score: 375
Period size: 125 Copynumber: 1.9 Consensus size: 124
15046135 TAAGTTTAGG
* ** * *
15046145 GTTTATAGTTTTTAGGTTTAGGGTTTGTGGTTTTTAAGTTTAGGGTTTATGGTTTTTAGGTTTAA
1 GTTTATAGTTTTTAGATTTAGGGTTTAAGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTTTAA
* *
15046210 AGTTTGTGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTTAGGGGTTGGGGTTTTTTAA
66 AGTTTGGGGTTTTTAAGTTAAGGGTTAGGGTTTTTA-GTTTAAGGGTTGGGGTTTTTTAA
*
15046270 GTTTATGGTTTTTAGATTTAGGGTTTAAGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTTTAA
1 GTTTATAGTTTTTAGATTTAGGGTTTAAGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTTTAA
* *
15046335 GGTTTGGGGTTTTTAATTTAAGGGTTAGGGTTTTTAGTTTAAGGGTT
66 AGTTTGGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGTTTAAGGGTT
15046382 TATGGTTTGT
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
124 10 0.10
125 92 0.90
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.51
Consensus pattern (124 bp):
GTTTATAGTTTTTAGATTTAGGGTTTAAGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTTTAA
AGTTTGGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGTTTAAGGGTTGGGGTTTTTTAA
Found at i:15046330 original size:15 final size:15
Alignment explanation
Indices: 15046263--15046339 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
15046253 GGGTTGGGGT
* *
15046263 TTTTTAAGTTTATGG
1 TTTTTAGGTTTAGGG
*
15046278 TTTTTAGATTTAGGG
1 TTTTTAGGTTTAGGG
* *
15046293 -TTTAAGGTTTTTA-AG
1 TTTTTAGG--TTTAGGG
*
15046308 -TTTAAGGTTTAGGG
1 TTTTTAGGTTTAGGG
*
15046322 TTTTTAGGTTTAAGG
1 TTTTTAGGTTTAGGG
15046337 TTT
1 TTT
15046340 GGGGTTTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
13 4 0.08
14 6 0.12
15 35 0.71
16 4 0.08
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.55
Consensus pattern (15 bp):
TTTTTAGGTTTAGGG
Found at i:15046669 original size:21 final size:21
Alignment explanation
Indices: 15046645--15046690 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
15046635 CGGCGATTAA
* *
15046645 GGTTCTTCCGGTAGGG-ATTCT
1 GGTTCCTCCGATAGGGCA-TCT
15046666 GGTTCCTCCGATAGGGCATCT
1 GGTTCCTCCGATAGGGCATCT
15046687 GGTT
1 GGTT
15046691 GTCGGAGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.35
Consensus pattern (21 bp):
GGTTCCTCCGATAGGGCATCT
Found at i:15046969 original size:18 final size:18
Alignment explanation
Indices: 15046931--15046970 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15046921 GACTCGGAAA
*
15046931 AGGATACATATAAAGGTT
1 AGGATACATATAAAGGCT
15046949 AGGATACATA-AAAGGGCT
1 AGGATACATATAAA-GGCT
15046967 AGGA
1 AGGA
15046971 AACGCACCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.45, C:0.07, G:0.28, T:0.20
Consensus pattern (18 bp):
AGGATACATATAAAGGCT
Found at i:15048801 original size:10 final size:10
Alignment explanation
Indices: 15048786--15048811 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
15048776 TTTAAAAAAA
15048786 TTAAAATTAT
1 TTAAAATTAT
15048796 TTAAAATTAT
1 TTAAAATTAT
15048806 TTAAAA
1 TTAAAA
15048812 ATAGGGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TTAAAATTAT
Found at i:15048884 original size:11 final size:11
Alignment explanation
Indices: 15048868--15048934 Score: 75
Period size: 11 Copynumber: 6.0 Consensus size: 11
15048858 ATTAAATATG
15048868 AATTTGAGAGA
1 AATTTGAGAGA
*
15048879 AATTTG-GAAGG
1 AATTTGAG-AGA
15048890 AATTTGAGA-A
1 AATTTGAGAGA
15048900 GAATTTGAGAGA
1 -AATTTGAGAGA
*
15048912 AAATTGAGAGGA
1 AATTTGAGA-GA
15048924 AATTTGAGAGA
1 AATTTGAGAGA
15048935 GGATTTGTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
10 1 0.02
11 34 0.72
12 12 0.26
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:15048904 original size:33 final size:35
Alignment explanation
Indices: 15048867--15048941 Score: 102
Period size: 33 Copynumber: 2.2 Consensus size: 35
15048857 GATTAAATAT
*
15048867 GAATTTGAGAGAAATTTG-GAAGG-AATTTGAGA-A
1 GAATTTGAGAGAAAATTGAG-AGGAAATTTGAGAGA
15048900 GAATTTGAGAGAAAATTGAGAGGAAATTTGAGAGA
1 GAATTTGAGAGAAAATTGAGAGGAAATTTGAGAGA
*
15048935 GGATTTG
1 GAATTTG
15048942 TTTGTGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 20 0.54
34 10 0.27
35 7 0.19
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.27
Consensus pattern (35 bp):
GAATTTGAGAGAAAATTGAGAGGAAATTTGAGAGA
Found at i:15048940 original size:12 final size:12
Alignment explanation
Indices: 15048867--15048941 Score: 72
Period size: 11 Copynumber: 6.6 Consensus size: 12
15048857 GATTAAATAT
15048867 GAATTTGAGAGA
1 GAATTTGAGAGA
15048879 -AATTTG-GA-A
1 GAATTTGAGAGA
15048888 GGAATTTGAGA-A
1 -GAATTTGAGAGA
15048900 GAATTTGAGAGA
1 GAATTTGAGAGA
*
15048912 -AAATTGAGAG-
1 GAATTTGAGAGA
15048922 GAAATTTGAGAGA
1 G-AATTTGAGAGA
*
15048935 GGATTTG
1 GAATTTG
15048942 TTTGTGAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
9 1 0.02
10 2 0.04
11 31 0.58
12 18 0.34
13 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.27
Consensus pattern (12 bp):
GAATTTGAGAGA
Found at i:15049721 original size:19 final size:19
Alignment explanation
Indices: 15049697--15049745 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
15049687 TGAGAGTTTC
* *
15049697 TTTTATATTTCTTCTTCTG
1 TTTTATATTTCCTCTTCAG
*
15049716 TTTTATTAGTTCCTCTTCAG
1 TTTTA-TATTTCCTCTTCAG
*
15049736 TTTAATATTT
1 TTTTATATTT
15049746 TGAAGCTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.16, C:0.14, G:0.06, T:0.63
Consensus pattern (19 bp):
TTTTATATTTCCTCTTCAG
Found at i:15051659 original size:5 final size:5
Alignment explanation
Indices: 15051649--15051674 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15051639 TGAGCATTCG
15051649 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
15051675 AATTTTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:15053891 original size:18 final size:17
Alignment explanation
Indices: 15053859--15053897 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
15053849 ATTTTTATAA
15053859 TTTTTTAAAAATATTGAT
1 TTTTTTAAAAATATT-AT
**
15053877 TTTTTTAAATCTATTAT
1 TTTTTTAAAAATATTAT
15053894 TTTT
1 TTTT
15053898 ATGTTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTTAAAAATATTAT
Found at i:15054718 original size:3 final size:3
Alignment explanation
Indices: 15054712--15054745 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
15054702 ACTACTTCTT
15054712 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15054746 GTTTAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15054789 original size:20 final size:21
Alignment explanation
Indices: 15054742--15054789 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
15054732 ATTATTATTA
15054742 TTATGTTT-AATTTAATGCTT
1 TTATGTTTAAATTTAATGCTT
* *
15054762 TT-TTTTTAAATTTATTG-TT
1 TTATGTTTAAATTTAATGCTT
15054781 TTATGTTTA
1 TTATGTTTA
15054790 TGATATTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.23, C:0.02, G:0.08, T:0.67
Consensus pattern (21 bp):
TTATGTTTAAATTTAATGCTT
Found at i:15056297 original size:7 final size:7
Alignment explanation
Indices: 15056285--15056316 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
15056275 AGTGGATTGA
15056285 TATTTAG
1 TATTTAG
15056292 TATTTAG
1 TATTTAG
15056299 TATTTAG
1 TATTTAG
*
15056306 TATTTTG
1 TATTTAG
15056313 TATT
1 TATT
15056317 ATCTATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TATTTAG
Found at i:15062262 original size:125 final size:125
Alignment explanation
Indices: 15062040--15062980 Score: 1816
Period size: 125 Copynumber: 7.5 Consensus size: 125
15062030 ATATAAGTTG
15062040 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062105 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
66 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062165 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062230 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
66 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062290 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062355 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
66 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062415 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062480 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
66 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062540 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062605 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
66 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062665 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062730 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
66 TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062790 CCACGAGGGCACGATTTCACAATTTCTTCTCAAAATAGCATCC-GGTAGAAGCGATTTTATACTA
1 CCACGAGGGCACGATTTCACAATTTCTTCTC-AAATAGCATCCTGGTAGAAGCGATTTTATACTA
* ** *
15062854 TTTGCTCACAAATGT-CAAAAAAAA-TATTTCTTACATGACCAACTGTAGCGAAATCGCGT
65 TTTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
15062913 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
1 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
15062978 TTG
66 TTG
15062981 ACCAGAAACG
Statistics
Matches: 810, Mismatches: 4, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
122 11 0.01
123 91 0.11
124 8 0.01
125 689 0.85
126 11 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (125 bp):
CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAAGCGATTTTATACTAT
TTGCTCAGAAGCGTAAAAAAAAAATTATTTCTTACATGACCAACTGTAGCGAAATCGCGT
Found at i:15063253 original size:29 final size:28
Alignment explanation
Indices: 15063209--15063263 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
15063199 ACGCGATTTC
15063209 TCAAAAAATGGACCATTCCGGTAAATAA
1 TCAAAAAATGGACCATTCCGGTAAATAA
* *
15063237 TCAAAAAATCGGCCCATTTCGGTAAAT
1 TCAAAAAAT-GGACCATTCCGGTAAAT
15063264 TTAGAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.24
Consensus pattern (28 bp):
TCAAAAAATGGACCATTCCGGTAAATAA
Found at i:15064063 original size:16 final size:16
Alignment explanation
Indices: 15064026--15064065 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
15064016 CGTTTGGTTC
*
15064026 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAAA
*
15064042 GCTGTAATGGAATAAA
1 ACTGTAATGGAATAAA
*
15064058 ATTGTAAT
1 ACTGTAAT
15064066 TAGTAATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (16 bp):
ACTGTAATGGAATAAA
Found at i:15067732 original size:23 final size:23
Alignment explanation
Indices: 15067693--15072097 Score: 1123
Period size: 23 Copynumber: 193.4 Consensus size: 23
15067683 TTTCCAGCAC
* *
15067693 TTAAACACTTCAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* *
15067716 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
15067739 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15067762 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15067785 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15067808 TTATACACCTCTA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
*
15067830 -TAAACATCTCAATTT-CAAGCAA
1 TTAAACACCTCAATTTACAA-CAA
* * * * *
15067852 CTAAACTA-TTCAATTTGCAGCAC
1 TTAAAC-ACCTCAATTTACAACAA
* * * *
15067875 TTGAACACTTCAATTTA-ATTCAT
1 TTAAACACCTCAATTTACA-ACAA
* * * *
15067898 TTGAGCACCTAAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* * *
15067921 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15067944 TTAAACACCTCAACTTCCAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15067967 TTTAACACCCCAATTAACAACAT
1 TTAAACACCTCAATTTACAACAA
** * *
15067990 TTCTACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
** * *
15068012 -TAAACATTTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15068034 CTAAACAACTCAATTTGCAACAC
1 TTAAACACCTCAATTTACAACAA
* * * *
15068057 TTACACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15068080 TTGAGCACCTCAATTTAAAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15068103 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15068126 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15068149 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
15068172 TTATACACCTCAA-TAACAGC-A
1 TTAAACACCTCAATTTACAACAA
* * **
15068193 -TAAACATCTCAATTTTCGGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** ** * *
15068215 CTAAAAAATTCAATTTGTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * * *
15068238 TTAAACACTTCAACTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
15068261 TTGAGCACCTCAA-TTAGCAACAA
1 TTAAACACCTCAATTTA-CAACAA
* *** *
15068284 TTAAACACTTCAATTTATGGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15068307 TTAAACACCTCAAATTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15068330 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15068353 TTATACACCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * *
15068375 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
15068397 CTAAACAATTCAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15068420 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
15068443 TTGAGCTCCTTAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
15068466 TTACACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15068489 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
15068512 TTTAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
*
15068534 TTAATACACCTCAA-TTACAACGA
1 TTAA-ACACCTCAATTTACAACAA
* **
15068557 -TAAACATCTCAATTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* * ** * *
15068579 CTAAATAATTCAATTTGCAGA-AC
1 TTAAACACCTCAATTTACA-ACAA
* *
15068602 TTAAACACTTCAATTTACAACAT
1 TTAAACACCTCAATTTACAACAA
* * *
15068625 TTGAGCACCTCAGTTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15068648 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15068671 TTAAACACCTCAA-CTATCAACAC
1 TTAAACACCTCAATTTA-CAACAA
* * *
15068694 TTTACCATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
***
15068716 TTAATACACCTCAA-TTACAGGGA
1 TTAA-ACACCTCAATTTACAACAA
* ***
15068739 -TAAACATCTCAAATTT-TGGCAA
1 TTAAACACCTC-AATTTACAACAA
* * ** ** * *
15068761 CTCAACAATTCAATTTGGAGCAC
1 TTAAACACCTCAATTTACAACAA
* *
15068784 CTAAACA-CTACAATTTACATCAA
1 TTAAACACCT-CAATTTACAACAA
* *
15068807 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* *
15068830 TTAAACACTTCAATTTACAACAT
1 TTAAACACCTCAATTTACAACAA
* * * *
15068853 TTAAACTCCTCAACTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15068876 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15068899 TTATACACCTCAA-TAACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
15068921 -TAAACATCTCAATTTCCGGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
15068943 CTAAAAAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
15068966 TTAAACACTTCAACTAACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
15068989 TTGAGCACCTCAA-TTAGCAACAA
1 TTAAACACCTCAATTTA-CAACAA
* * * *
15069012 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15069035 TTAAACAGCTCAAATTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15069058 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15069081 TTATACACCTTAA-ATACAACGA
1 TTAAACACCTCAATTTACAACAA
* * *
15069103 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
15069125 CTAAACAATTCAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15069148 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * **
15069171 TTGAGCACCTCGGTTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15069194 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15069217 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
15069240 TTTACCATCC-CAA-TTAGCAAC-A
1 TTAAACA-CCTCAATTTA-CAACAA
*
15069262 TTAATACACCTCAA-TTACAACGA
1 TTAA-ACACCTCAATTTACAACAA
* **
15069285 -TAAACATCTCAATTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* ** * *
15069307 CTAAACAATTCAATTTGCAGA-AC
1 TTAAACACCTCAATTTACA-ACAA
* * * *
15069330 TTAAATACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * **
15069353 TTGAGCACCTCGGTTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15069376 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15069399 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
15069422 TTTACCATCC-CAA-TTAGCAAC-A
1 TTAAACA-CCTCAATTTA-CAACAA
* *
15069444 TTAATACACCTCAA-TTACAGCGA
1 TTAA-ACACCTCAATTTACAACAA
* ****
15069467 -TAAACATCTCAATTTTTGGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
15069489 CTCAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* *
15069512 CTAAACA-CTACAATTTACATCAA
1 TTAAACACCT-CAATTTACAACAA
* *
15069535 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
15069558 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
15069581 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15069604 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
15069627 TTATACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * *
15069649 -TAAACATCTCCATTT-CTAGCAA
1 TTAAACACCTCAATTTAC-AACAA
* * ** * * *
15069671 CTAAATAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* ** * *
15069694 TTGAACAGTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * * *
15069717 TTGAGCACCTAAATCTACATCAA
1 TTAAACACCTCAATTTACAACAA
* *
15069740 TTAAACACTTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15069763 TTAAACACCTCAACTTCCTACAC
1 TTAAACACCTCAATTTACAACAA
* * ** *
15069786 TTTAACATCC-CGATAAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
15069809 TTATACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* *
15069831 -TAAACATCTCAATTT-CTAGCAA
1 TTAAACACCTCAATTTAC-AACAA
* ** * * *
15069853 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15069876 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
15069899 TTGAGCACTTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * *
15069922 TTAAACACTTCAATTT-CTAGCAT
1 TTAAACACCTCAATTTAC-AACAA
* * * *
15069945 TTAAAAACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
15069968 TTTAACATCTGAATTAACAACAT
1 TTAAACACCTCAATTTACAACAA
* *
15069991 TTATAA-ACCTCAA-TTACAGCGA
1 TTA-AACACCTCAATTTACAACAA
* * **
15070013 -TAAACATCTCAATTTTCGGCAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
15070035 CTAAACAATTCAATTTGTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15070058 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
15070081 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15070104 ATAAACACATCAATTTATAGC-A
1 TTAAACACCTCAATTTACAACAA
* *
15070126 TCTAAACACCTCAAATTACAACAC
1 T-TAAACACCTCAATTTACAACAA
* * *
15070150 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15070173 TTATACACCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * *
15070195 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
15070217 CTAAACAATTCAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * ** *
15070240 TTAAACACTTCAATTAACATGAT
1 TTAAACACCTCAATTTACAACAA
* *
15070263 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* *
15070286 TTAAACACTTCAATTTACAGC-A
1 TTAAACACCTCAATTTACAACAA
* *
15070308 TTCAAACACCTCAACTTACAACAC
1 TT-AAACACCTCAATTTACAACAA
* *
15070332 TTTAACATCC-CAATTGACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* *
15070354 TTAATACACCTCAA-TTACAGCGA
1 TTAA-ACACCTCAATTTACAACAA
* * *
15070377 -TAAACATCTTAATTT-CTGGA-AA
1 TTAAACACCTCAATTTAC--AACAA
* * ** * * *
15070399 CTGAACAATTCAATTTCCAGCAC
1 TTAAACACCTCAATTTACAACAA
** * *
15070422 TTAAACA-CTTTATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * * *
15070444 TTGAGCACTTAAATTTACAACTA
1 TTAAACACCTCAATTTACAACAA
* * *
15070467 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
*
15070490 TTAAACACCTCAACTTACAA-AA
1 TTAAACACCTCAATTTACAACAA
* *
15070512 CTT-ACCATCC-CAATTAACAAC-A
1 -TTAAACA-CCTCAATTTACAACAA
* *
15070534 TTACTACACCTCAA-TTACAACGA
1 TTA-AACACCTCAATTTACAACAA
* * *
15070557 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* ** * * *
15070579 CTAAACAATTCAATGTT-TATCAC
1 TTAAACACCTCAAT-TTACAACAA
* ** * * *
15070602 CTAAACAATTGAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* ** * *
15070625 TTGAGTACCTCAGTTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* *
15070648 TTAAACACTTCAATTTACAGA-AT
1 TTAAACACCTCAATTTACA-ACAA
* * *
15070671 TTAAACGCCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
15070694 TTTAACATCCT-AATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* *
15070716 TTAATACACCTTAA-TTACAGCAA
1 TTAA-ACACCTCAATTTACAACAA
** * *
15070739 -TAAACATATCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** ** * * *
15070761 CTGAGTAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15070784 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15070807 TTGAGCATCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* ** * *
15070830 TTAAATAGTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15070853 TTAAACGCCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * *
15070876 TTTAACATCC-CAATTAACAAGAT
1 TTAAACA-CCTCAATTTACAACAA
* *
15070899 TTATACACCGT-AATTATAGCAATAAA
1 TTAAACACC-TCAATT-TA-CAA-CAA
* ** * *
15070925 CTAAACAATTCAATTTACAGCAC
1 TTAAACACCTCAATTTACAACAA
* * **
15070948 TTAAACACTTCAATTTACATCTT
1 TTAAACACCTCAATTTACAACAA
* * *
15070971 TTGAGCACCTCAATTTACAAAAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
15070994 TTAAACACTTCAGTTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15071017 TTAAACACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15071040 TTTACCATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* * *
15071062 TTAATACACCTTAA-TTACAGCGA
1 TTAA-ACACCTCAATTTACAACAA
* * *
15071085 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
** ** * *
15071107 TTAAACAGTTCAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * * * **
15071130 TTAAACACTTTAACTTACATCGT
1 TTAAACACCTCAATTTACAACAA
* *
15071153 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * **
15071176 TTAAACACTTCAATTTACAGCTT
1 TTAAACACCTCAATTTACAACAA
* * *
15071199 TTAAACACCTTAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * *
15071222 TTTAACA-TTCCGATTAACAAC-A
1 TTAAACACCT-CAATTTACAACAA
* * **
15071244 GTAATACACCCCAATTT-CTGGCAA
1 TTAA-ACACCTCAATTTAC-AACAA
* * * * ** *
15071268 CTAAACGA-TTGAATTTGCAGTAC
1 TTAAAC-ACCTCAATTTACAACAA
* * * * * *
15071291 TTACACACTTTAATTTCCATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15071314 TTGAGCACCTTAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* *
15071337 TTAAACACTTCAATTTACAGA-AT
1 TTAAACACCTCAATTTACA-ACAA
* * *
15071360 TTAAACACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
15071383 TTGAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
*
15071405 TTAATACACCTCAA-TTACAACGA
1 TTAA-ACACCTCAATTTACAACAA
* * **
15071428 -TAAACATCTCAACTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* ** * * *
15071450 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
** * *
15071473 TTAAACAGTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15071496 TTGAGCACCTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15071519 TTAACCACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15071542 TTAAACCCCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15071565 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
15071588 TTATACACCGT-AA-TTGCAGCAA
1 TTAAACACC-TCAATTTACAACAA
** *
15071610 -TAAACATATCAATTTCCAACAA
1 TTAAACACCTCAATTTACAACAA
* ** * * *
15071632 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15071655 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * * **
15071678 TTGAGCATCTGAATTTACAGTAA
1 TTAAACACCTCAATTTACAACAA
* * * *
15071701 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
15071724 TTAAACACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
15071747 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15071770 TTATACTCATCAA-TTACAACGA
1 TTAAACACCTCAATTTACAACAA
* * **
15071792 -TAAACATCTCAATTTTCGGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
15071814 CTAAATAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
15071837 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
15071860 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
15071883 ATATACACTTCAATTTATAGC-A
1 TTAAACACCTCAATTTACAACAA
* *
15071905 TTAAAACACCTCAAATTACAACAC
1 TT-AAACACCTCAATTTACAACAA
** * * *
15071929 TCGAGCATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
15071952 TTATACACCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
15071974 -TAAACATCTCAATTTCCAGTAA
1 TTAAACACCTCAATTTACAACAA
* ** * ** * *
15071996 CTAAACAATTTAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
** * *
15072019 TTAAACAATTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
15072042 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
15072065 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
*
15072088 TTACACACCT
1 TTAAACACCT
15072098 TTTGAGAAAA
Statistics
Matches: 3134, Mismatches: 1070, Indels: 356
0.69 0.23 0.08
Matches are distributed among these distances:
20 13 0.00
21 185 0.06
22 386 0.12
23 2454 0.78
24 80 0.03
25 6 0.00
26 10 0.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (23 bp):
TTAAACACCTCAATTTACAACAA
Found at i:15067999 original size:182 final size:182
Alignment explanation
Indices: 15067687--15070925 Score: 4765
Period size: 182 Copynumber: 17.8 Consensus size: 182
15067677 ACATAGTTTC
*
15067687 CAGCACTTAAACACTTCAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
15067752 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
15067817 TCTATTACAGCGATAAACATCTCAATTTCAAGCAACTAAACTATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15067869 CAGCACTTGAACACTTCAATTTA-ATTCATTTGAGCACCTAAATTTACATCAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACA-TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCA
* * * *
15067933 ATTTACAGCATTTAAACACCTCAACTTCCAACAATTTAACACCCCAATTAACAACATTTCTACAC
65 ATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* *
15067998 CTCAATTACAGCGATAAACATTTCAATTTCCAGCAACTAAACAACTCAATTTG
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15068051 CAACACTTACACACTTCAATTTACATCATTTGAGCACCTCAATTTAAAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
15068116 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
15068181 TCAATAACAGC-ATAAACATCTCAATTTTCGGCAACTAAAAAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
15068232 TAGCACTTAAACACTTCAACTTACATCATTTGAGCACCTCAA-TTAGCAACAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
** * *
15068296 ATTTATGGCATTTAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACAC
65 ATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* *
15068361 CTTAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTT
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
15068414 TAGCACTTAAACACTTCAATTTACATCATTTGAGCTCCTTAATTTACAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
15068479 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ** *
15068544 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAATAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15068596 CAGAACTTAAACACTTCAATTTACAACATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15068661 TTTATAGCATTTAAACACCTCAAC-TATCAACACTTTACCATCCCAATTAACAACATTAATACAC
66 TTTACAGCATTTAAACACCTCAACTTA-CAACACTTTAACATCCCAATTAACAACATTTATACAC
* ** *
15068725 CTCAATTACAGGGATAAACATCTCAAATTT-TGGCAACTCAACAATTCAATTTG
130 CTCAATTACAGCGATAAACATCTC-AATTTCCAGCAACTAAACAATTCAATTTG
* * * *
15068778 GAGCACCTAAACACTACAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15068843 TTTACAACATTTAAACTCCTCAACTTACAGCATTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
15068908 TCAATAACAGCGATAAACATCTCAATTTCCGGCAACTAAAAAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
15068960 CAGCACTTAAACACTTCAACTAACATCATTTGAGCACCTCAA-TTAGCAACAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
* * * *
15069024 ATTTATAGCATTTAAACAGCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACAC
65 ATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* * * *
15069089 CTTAAATACAACGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTT
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* **
15069142 TAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCGGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15069207 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAGCAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* **
15069272 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * **
15069324 CAGAACTTAAATACTTCAATTTACATCATTTGAGCACCTCGGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15069389 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAGCAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
*** *
15069454 TCAATTACAGCGATAAACATCTCAATTTTTGGCAACTCAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15069506 CAGCACCTAAACACTACAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
15069571 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
15069636 TCAATTACAGCGATAAACATCTCCATTTCTAGCAACTAAATAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * *
15069688 CAGCACTTGAACAGTTCAATTTACATCATTTGAGCACCTAAATCTACATCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * * *
15069753 TTTACAGCAATTAAACACCTCAACTTCCTACACTTTAACATCCCGATAAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
*
15069818 TCAATTACAGCGATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
15069870 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACTTCAATTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * ** *
15069935 TTT-CTAGCATTTAAAAACCTCAACTAACAACACTTTAACATCTGAATTAACAACATTTATAAAC
66 TTTAC-AGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* *
15069999 CTCAATTACAGCGATAAACATCTCAATTTTCGGCAACTAAACAATTCAATTTG
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15070052 TAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAAATAAACACATCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15070117 TTTATAGCATCTAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
15070182 TTAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTT
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15070234 TAGCACTTAAACACTTCAATTAACATGATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15070299 TTTACAGCATTCAAACACCTCAACTTACAACACTTTAACATCCCAATTGACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ** * * *
15070364 TCAATTACAGCGATAAACATCTTAATTTCTGGAAACTGAACAATTCAATTTC
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
15070416 CAGCACTTAAACACTT-TATTTACATCATTTGAGCACTTAAATTTACAACTATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15070480 TTTACATCATTTAAACACCTCAACTTACAAAAC-TTACCATCCCAATTAACAACA-TTACTACAC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTA-TACAC
*
15070543 CTCAATTACAACGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATGTT-
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAAT-TTG
* * * * * * * *
15070596 TATCACCTAAACAATTGAATTTACATCATTTGAGTACCTCAGTTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15070661 TTTACAGAATTTAAACGCCTCAACTTACAACACTTTAACATCCTAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * * **
15070726 TTAATTACAGCAATAAACATATCAATTTCCAGCAACTGAGTAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15070778 CAGCACTTAAACACTTCAATTTACATCATTTGAGCATCTCAATTTACAACAATTAAATAGTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
15070843 TTTACAGCATTTAAACGCCTCAACTTACAACACTTTAACATCCCAATTAACAAGATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
15070908 GT-AATTATAGCAATAAAC
131 -TCAATTACAGCGATAAAC
15070926 TAAACAATTC
Statistics
Matches: 2759, Mismatches: 278, Indels: 40
0.90 0.09 0.01
Matches are distributed among these distances:
179 2 0.00
180 83 0.03
181 320 0.12
182 2337 0.85
183 17 0.01
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (182 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
Found at i:15068743 original size:364 final size:364
Alignment explanation
Indices: 15067687--15072097 Score: 6196
Period size: 364 Copynumber: 12.2 Consensus size: 364
15067677 ACATAGTTTC
*
15067687 CAGCACTTAAACACTTCAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
15067752 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* ** * *
15067817 TCTATTACAGCGATAAACATCTCAATTTCAAGCAACTAAACTATTCAATTTGCAGCACTTGAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* *
15067882 CTTCAATTTA-ATTCATTTGAGCACCTAAATTTACATCAATTAAACACTTCAATTTACAGCATTT
196 CTTCAATTTACA-TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTT
* * * *
15067946 AAACACCTCAACTTCCAACAATTTAACACCCCAATTAACAACATTTCTACACCTCAATTACAGCG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCG
* *
15068011 ATAAACATTTCAATTTCCAGCAACTAAACAACTCAATTTG
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15068051 CAACACTTACACACTTCAATTTACATCATTTGAGCACCTCAATTTAAAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
15068116 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * *
15068181 TCAATAACAGC-ATAAACATCTCAATTT-TCGGCAACTAAAAAATTCAATTTGTAGCACTTAAAC
131 TCAATTACAGCGATAAACATCTCAATTTCT-GGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* **
15068244 ACTTCAACTTACATCATTTGAGCACCTCAA-TTAGCAACAATTAAACACTTCAATTTATGGCATT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCAATTTACAGCATT
* * *
15068308 TAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACACCTTAATTACAGC
259 TAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGC
*
15068373 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTT
324 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
15068414 TAGCACTTAAACACTTCAATTTACATCATTTGAGCTCCTTAATTTACAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
15068479 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * *
15068544 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAATAATTCAATTTGCAGAACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
15068609 CTTCAATTTACAACATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAATTTATAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * *
15068674 AACACCTCAAC-TATCAACACTTTACCATCCCAATTAACAACATTAATACACCTCAATTACAGGG
261 AACACCTCAACTTA-CAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCG
** *
15068738 ATAAACATCTCAAATTT-TGGCAACTCAACAATTCAATTTG
325 ATAAACATCTC-AATTTCCAGCAACTAAACAATTCAATTTG
* * * *
15068778 GAGCACCTAAACACTACAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * * *
15068843 TTTACAACATTTAAACTCCTCAACTTACAGCATTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * *
15068908 TCAATAACAGCGATAAACATCTCAATTTCCGGCAACTAAAAAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
15068973 CTTCAACTAACATCATTTGAGCACCTCAA-TTAGCAACAATTAAACACTTCAATTTATAGCATTT
196 CTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCAATTTACAGCATTT
* * * * * *
15069037 AAACAGCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACACCTTAAATACAACG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCG
*
15069102 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTT
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* **
15069142 TAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCGGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15069207 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAGCAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * *
15069272 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGAACTTAAATA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
** *
15069337 CTTCAATTTACATCATTTGAGCACCTCGGTTTACAACAATTAAACACTTCAATTTATAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * *
15069402 AACACCTCAACTTACAACACTTTACCATCCCAATTAGCAACATTAATACACCTCAATTACAGCGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGA
*** *
15069467 TAAACATCTCAATTTTTGGCAACTCAACAATTCAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15069506 CAGCACCTAAACACTACAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
15069571 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * * *
15069636 TCAATTACAGCGATAAACATCTCCATTTCTAGCAACTAAATAATTCAATTTGCAGCACTTGAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * * *
15069701 GTTCAATTTACATCATTTGAGCACCTAAATCTACATCAATTAAACACTTCAATTTACAGCAATTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * * *
15069766 AACACCTCAACTTCCTACACTTTAACATCCCGATAAACAACATTTATACACCTCAATTACAGCGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGA
*
15069831 TAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
15069870 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACTTCAATTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * ** * *
15069935 TTT-CTAGCATTTAAAAACCTCAACTAACAACACTTTAACATCTGAATTAACAACATTTATAAAC
66 TTTAC-AGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACAC
*
15069999 CTCAATTACAGCGATAAACATCTCAATTT-TCGGCAACTAAACAATTCAATTTGTAGCACTTAAA
130 CTCAATTACAGCGATAAACATCTCAATTTCT-GGCAACTAAACAATTCAATTTGCAGCACTTAAA
* * * *
15070063 CACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAAATAAACACATCAATTTATAGCATC
194 CACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATT
* * *
15070128 TAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACACCTTAATTACAGC
259 TAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGC
*
15070193 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTT
324 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15070234 TAGCACTTAAACACTTCAATTAACATGATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
15070299 TTTACAGCATTCAAACACCTCAACTTACAACACTTTAACATCCCAATTGACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * * *
15070364 TCAATTACAGCGATAAACATCTTAATTTCTGGAAACTGAACAATTCAATTTCCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * * *
15070429 CTT-TATTTACATCATTTGAGCACTTAAATTTACAACTATTAAACACTTCAATTTACATCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * *
15070493 AACACCTCAACTTACAAAAC-TTACCATCCCAATTAACAACA-TTACTACACCTCAATTACAACG
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTA-TACACCTCAATTACAGCG
15070556 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATGTT-
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAAT-TTG
* * * * * * * *
15070596 TATCACCTAAACAATTGAATTTACATCATTTGAGTACCTCAGTTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15070661 TTTACAGAATTTAAACGCCTCAACTTACAACACTTTAACATCCTAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* * * ** * **
15070726 TTAATTACAGCAATAAACATATCAATTTCCAGCAACTGAGTAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
15070791 CTTCAATTTACATCATTTGAGCATCTCAATTTACAACAATTAAATAGTTCAATTTACAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* *
15070856 AACGCCTCAACTTACAACACTTTAACATCCCAATTAACAAGATTTATACACCGT-AATT------
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC-TCAATTACAGCG
* *
15070914 AT----A--GCAA--T--A--AACTAAACAATTCAATTTA
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
15070942 CAGCACTTAAACACTTCAATTTACATCTTTTGAGCACCTCAATTTACAAAAATTAAACACTTCAG
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15071007 TTTATAGCATTTAAACACCTCAACTAACAACACTTTACCATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* ** * * **
15071072 TTAATTACAGCGATAAACATCTCAATTTCCAGCAATTAAACAGTTCAATTTTTAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * *
15071137 CTTTAACTTACATCGTTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCTTTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * * *
15071202 AACACCTTAACTTACAACACTTTAACATTCCGATT---AAC----A-ACA-GT-AA-TACA-C--
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGA
** * *
15071253 ----C--C-CAATTTCTGGCAACTAAACGATTGAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * *
15071285 CAGTACTTACACACTTTAATTTCCATCATTTGAGCACCTTAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15071350 TTTACAGAATTTAAACACCTCAACTAACAACACTTGAACATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* *
15071415 TCAATTACAACGATAAACATCTCAACTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * *
15071480 GTTCAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAACCACTTCAATTTACATCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * *
15071545 AACCCCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCGT-AATTGCAGCA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC-TCAATTACAGCG
* *
15071609 ATAAACATATCAATTTCCAACAACTAAACAATTCAATTTG
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * **
15071649 CAGCACTTAAACACTTCAATTTACATCATTTGAGCATCTGAATTTACAGTAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * * *
15071714 TTTATAGCATTTAAACACCTCAACTAACAACACTTTAACATCCCAATTAACAACATTTATACTCA
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
* *
15071779 TCAATTACAACGATAAACATCTCAATTT-TCGGCAACTAAATAATTCAATTTGCAGCACTTAAAC
131 TCAATTACAGCGATAAACATCTCAATTTCT-GGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* * * *
15071843 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAAATATACACTTCAATTTATAGCATTA
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTT
* ** * *
15071908 AAACACCTCAAATTACAACACTCGAGCATCCCAATTAACAACATTTATACACCTTAATTACAGCG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCG
* * *
15071973 ATAAACATCTCAATTTCCAGTAACTAAACAATTTAATTTT
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
15072013 TAGCACTTAAACAATTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
15072078 TTTACAGCATTTACACACCT
66 TTTACAGCATTTAAACACCT
15072098 TTTGAGAAAA
Statistics
Matches: 3595, Mismatches: 394, Indels: 116
0.88 0.10 0.03
Matches are distributed among these distances:
335 1 0.00
336 3 0.00
337 3 0.00
338 3 0.00
339 2 0.00
343 280 0.08
345 2 0.00
346 277 0.08
348 1 0.00
350 2 0.00
351 3 0.00
352 3 0.00
353 3 0.00
354 4 0.00
355 1 0.00
358 2 0.00
361 4 0.00
362 249 0.07
363 482 0.13
364 2250 0.63
365 20 0.01
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (364 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGA
TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
Found at i:15069027 original size:546 final size:546
Alignment explanation
Indices: 15067687--15072097 Score: 6210
Period size: 546 Copynumber: 8.2 Consensus size: 546
15067677 ACATAGTTTC
*
15067687 CAGCACTTAAACACTTCAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
15067752 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
15067817 TCTATTACAGCGATAAACATCTCAATTTCAAGCAACTAAACTATTCAATTTGCAGCACTTGAACA
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* *
15067882 CTTCAATTTA-ATTCATTTGAGCACCTAAATTTACATCAATTAAACACTTCAATTTACAGCATTT
196 CTTCAATTTACA-TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTT
* * * * *
15067946 AAACACCTCAACTTCCAACAATTTAACACCCCAATTAACAACATTTCTACACCTCAATTACAGCG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACG
* * * *
15068011 ATAAACATTTCAATTTCCAGCAACTAAACAACTCAATTTGCAACACTTACACACTTCAATTTACA
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* *
15068076 TCATTTGAGCACCTCAATTTAAAACAATTAAACACTTCAATTTATAGCATTTAAACACCTCAACT
390 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
* *
15068141 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATAACAGC-ATAAACATCTCAA
455 TACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAA
*
15068205 TTT-TCGGCAACTAAAAAATTCAATTTG
520 TTTCT-GGCAACTAAACAATTCAATTTG
* *
15068232 TAGCACTTAAACACTTCAACTTACATCATTTGAGCACCTCAA-TTAGCAACAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
** * *
15068296 ATTTATGGCATTTAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACAC
65 ATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* **
15068361 CTTAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTTTAGCACTTAAAC
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* * * *
15068426 ACTTCAATTTACATCATTTGAGCTCCTTAATTTACAACAATTACACACTTCAATTTATAGCATTT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTT
*
15068491 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAACG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACG
** * *
15068556 ATAAACATCTCAATTTCTGGCAACTAAATAATTCAATTTGCAGAACTTAAACACTTCAATTTACA
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * *
15068621 ACATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAATTTATAGCATTTAAACACCTCAAC-
390 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
* *
15068685 TATCAACACTTTACCATCCCAATTAACAACATTAATACACCTCAATTACAGGGATAAACATCTCA
455 TA-CAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTC-
*
15068750 AATTT-TGGCAACTCAACAATTCAATTTG
518 AATTTCTGGCAACTAAACAATTCAATTTG
* * * *
15068778 GAGCACCTAAACACTACAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15068843 TTTACAACATTTAAACTCCTCAACTTACAGCATTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
15068908 TCAATAACAGCGATAAACATCTCAATTTCCGGCAACTAAAAAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
15068973 CTTCAACTAACATCATTTGAGCACCTCAA-TTAGCAACAATTAAACACTTCAATTTATAGCATTT
196 CTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCAATTTACAGCATTT
* * * * *
15069037 AAACAGCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACACCTTAAATACAACG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACG
**
15069102 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTTTAGCACTTAAACACTTCAATTTACA
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
** *
15069167 TCATTTGAGCACCTCGGTTTACAACAATTAAACACTTCAATTTATAGCATTTAAACACCTCAACT
390 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
* * *
15069232 TACAACACTTTACCATCCCAATTAGCAACATTAATACACCTCAATTACAACGATAAACATCTCAA
455 TACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAA
15069297 TTTCTGGCAACTAAACAATTCAATTTG
520 TTTCTGGCAACTAAACAATTCAATTTG
* * **
15069324 CAGAACTTAAATACTTCAATTTACATCATTTGAGCACCTCGGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15069389 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAGCAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
*** * *
15069454 TCAATTACAGCGATAAACATCTCAATTTTTGGCAACTCAACAATTCAATTTGCAGCACCTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* *
15069519 CTACAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
*
15069584 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGA
* * * * *
15069649 TAAACATCTCCATTTCTAGCAACTAAATAATTCAATTTGCAGCACTTGAACAGTTCAATTTACAT
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACAT
* * * *
15069714 CATTTGAGCACCTAAATCTACATCAATTAAACACTTCAATTTACAGCAATTAAACACCTCAACTT
391 CATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTT
* * * * *
15069779 CCTACACTTTAACATCCCGATAAACAACATTTATACACCTCAATTACAGCGATAAACATCTCAAT
456 ACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAAT
*
15069844 TTCTAGCAACTAAACAATTCAATTTG
521 TTCTGGCAACTAAACAATTCAATTTG
* *
15069870 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACTTCAATTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * ** *
15069935 TTT-CTAGCATTTAAAAACCTCAACTAACAACACTTTAACATCTGAATTAACAACATTTATAAAC
66 TTTAC-AGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* * *
15069999 CTCAATTACAGCGATAAACATCTCAATTTTCGGCAACTAAACAATTCAATTTGTAGCACTTAAAC
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* * * *
15070064 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAAATAAACACATCAATTTATAGCATCT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTT
* * * *
15070129 AAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACG
** *
15070194 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTTTAGCACTTAAACACTTCAATTAACA
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* *
15070259 TGATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTCAAACACCTCAACT
390 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
* *
15070324 TACAACACTTTAACATCCCAATTGACAACATTAATACACCTCAATTACAGCGATAAACATCTTAA
455 TACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAA
* * *
15070389 TTTCTGGAAACTGAACAATTCAATTTC
520 TTTCTGGCAACTAAACAATTCAATTTG
* * * *
15070416 CAGCACTTAAACACTT-TATTTACATCATTTGAGCACTTAAATTTACAACTATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
15070480 TTTACATCATTTAAACACCTCAACTTACAAAAC-TTACCATCCCAATTAACAACA-TTACTACAC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTA-TACAC
* * * *
15070543 CTCAATTACAACGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATGTT-TATCACCTAAA
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAAT-TTGCAGCACTTAAA
* * * * * *
15070607 CAATTGAATTTACATCATTTGAGTACCTCAGTTTACAGCAATTAAACACTTCAATTTACAGAATT
194 CACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATT
* * * * *
15070672 TAAACGCCTCAACTTACAACACTTTAACATCCTAATTAACAACATTAATACACCTTAATTACAGC
259 TAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAAC
* * * **
15070737 AATAAACATATCAATTTCCAGCAACTGAGTAATTCAATTTGCAGCACTTAAACACTTCAATTTAC
324 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTAC
* * * *
15070802 ATCATTTGAGCATCTCAATTTACAACAATTAAATAGTTCAATTTACAGCATTTAAACGCCTCAAC
389 ATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAAC
* * *
15070867 TTACAACACTTTAACATCCCAATTAACAAGATTTATACACCGT-AATTATAGC-----A-A--T-
454 TTACAACACTTTAACATCCCAATTAACAACATTAATACACC-TCAATTACAGCGATAAACATCTC
*
15070922 -A--------AACTAAACAATTCAATTTA
518 AATTTCTGGCAACTAAACAATTCAATTTG
* * *
15070942 CAGCACTTAAACACTTCAATTTACATCTTTTGAGCACCTCAATTTACAAAAATTAAACACTTCAG
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
15071007 TTTATAGCATTTAAACACCTCAACTAACAACACTTTACCATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * **
15071072 TTAATTACAGCGATAAACATCTCAATTTCCAGCAATTAAACAGTTCAATTTTTAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * *
15071137 CTTTAACTTACATCGTTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCTTTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
* * * *
15071202 AACACCTTAACTTACAACACTTTAACATTCCGATT---AAC----A-ACA-GT-AA-TAC-AC--
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGA
** * * * * * *
15071253 ----C--C-CAATTTCTGGCAACTAAACGATTGAATTTGCAGTACTTACACACTTTAATTTCCAT
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACAT
* * *
15071311 CATTTGAGCACCTTAATTTACAACAATTAAACACTTCAATTTACAGAATTTAAACACCTCAACTA
391 CATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTT
* * *
15071376 ACAACACTTGAACATCCCAATTAACAACATTAATACACCTCAATTACAACGATAAACATCTCAAC
456 ACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAAT
15071441 TTCTGGCAACTAAACAATTCAATTTG
521 TTCTGGCAACTAAACAATTCAATTTG
* * *
15071467 CAGCACTTAAACAGTTCAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAACCACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
15071532 TTTACATCATTTAAACCCCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
15071597 GT-AATTGCAGCAATAAACATATCAATTTCCAACAACTAAACAATTCAATTTGCAGCACTTAAAC
131 -TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* * ** *
15071661 ACTTCAATTTACATCATTTGAGCATCTGAATTTACAGTAATTAAACACTTCAATTTATAGCATTT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTT
* * *
15071726 AAACACCTCAACTAACAACACTTTAACATCCCAATTAACAACATTTATACTCATCAATTACAACG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACG
* * *
15071791 ATAAACATCTCAATTTTCGGCAACTAAATAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * * * *
15071856 TCATTTGAGCACCTCAATTTACAACAAATATACACTTCAATTTATAGCATTAAAACACCTCAAAT
390 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
** * * *
15071921 TACAACACTCGAGCATCCCAATTAACAACATTTATACACCTTAATTACAGCGATAAACATCTCAA
455 TACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAA
** * * *
15071986 TTTCCAGTAACTAAACAATTTAATTTT
520 TTTCTGGCAACTAAACAATTCAATTTG
* *
15072013 TAGCACTTAAACAATTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
15072078 TTTACAGCATTTACACACCT
66 TTTACAGCATTTAAACACCT
15072098 TTTGAGAAAA
Statistics
Matches: 3432, Mismatches: 374, Indels: 119
0.87 0.10 0.03
Matches are distributed among these distances:
506 1 0.00
507 146 0.04
510 1 0.00
512 1 0.00
513 1 0.00
515 1 0.00
516 1 0.00
517 4 0.00
518 2 0.00
519 1 0.00
520 3 0.00
521 1 0.00
525 281 0.08
526 34 0.01
527 72 0.02
528 172 0.05
529 2 0.00
532 1 0.00
533 2 0.00
534 2 0.00
535 2 0.00
536 4 0.00
537 2 0.00
538 1 0.00
539 1 0.00
543 4 0.00
544 360 0.10
545 539 0.16
546 1776 0.52
547 14 0.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (546 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACA
CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTA
AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGA
TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACAT
CATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTT
ACAACACTTTAACATCCCAATTAACAACATTAATACACCTCAATTACAGCGATAAACATCTCAAT
TTCTGGCAACTAAACAATTCAATTTG
Found at i:15069295 original size:21 final size:23
Alignment explanation
Indices: 15069245--15069298 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 23
15069235 AACACTTTAC
*
15069245 CATCCCAATTAGCAACATTAATA
1 CATCTCAATTAGCAACATTAATA
*
15069268 CACCTCAATTA-CAACGA-TAA-A
1 CATCTCAATTAGCAAC-ATTAATA
15069289 CATCTCAATT
1 CATCTCAATT
15069299 TCTGGCAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 10 0.37
22 7 0.26
23 10 0.37
ACGTcount: A:0.43, C:0.28, G:0.04, T:0.26
Consensus pattern (23 bp):
CATCTCAATTAGCAACATTAATA
Found at i:15071240 original size:182 final size:182
Alignment explanation
Indices: 15070926--15071253 Score: 512
Period size: 182 Copynumber: 1.8 Consensus size: 182
15070916 AGCAATAAAC
* *
15070926 TAAACAATTCAATTTACAGCACTTAAACACTTCAATTTACATCTTTTGAGCACCTCAATTTACAA
1 TAAACAATTCAATTTACAGCACTTAAACACTTCAACTTACATCGTTTGAGCACCTCAATTTACAA
* * *
15070991 AAATTAAACACTTCAGTTTATAGCATTTAAACACCTCAACTAACAACACTTTACCATCCCAATTA
66 AAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTTTAACATCCCAATTA
*
15071056 ACAACATTAATACACCTTAATTACAGCGATAAACATCTCAATTTCCAGCAAT
131 ACAACAGTAATACACCTTAATTACAGCGATAAACATCTCAATTTCCAGCAAT
* ** *
15071108 TAAACAGTTCAATTTTTAGCACTTAAACACTTTAACTTACATCGTTTGAGCACCTCAATTTACAA
1 TAAACAATTCAATTTACAGCACTTAAACACTTCAACTTACATCGTTTGAGCACCTCAATTTACAA
* * * * * *
15071173 CAATTAAACACTTCAATTTACAGCTTTTAAACACCTTAACTTACAACACTTTAACATTCCGATTA
66 AAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTTTAACATCCCAATTA
15071238 ACAACAGTAATACACC
131 ACAACAGTAATACACC
15071254 CCAATTTCTG
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
182 130 1.00
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (182 bp):
TAAACAATTCAATTTACAGCACTTAAACACTTCAACTTACATCGTTTGAGCACCTCAATTTACAA
AAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTTTAACATCCCAATTA
ACAACAGTAATACACCTTAATTACAGCGATAAACATCTCAATTTCCAGCAAT
Found at i:15071498 original size:182 final size:182
Alignment explanation
Indices: 15071255--15072097 Score: 1195
Period size: 182 Copynumber: 4.6 Consensus size: 182
15071245 TAATACACCC
* * * * * *
15071255 CAATTTCTGGCAACTAAACGATTGAATTTGCAGTACTTACACACTTTAATTTCCATCATTTGAGC
1 CAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGC
* *
15071320 ACCTTAATTTACAACAATTAAACACTTCAATTTACAGAATTTAAACACCTCAACTAACAACACTT
66 ACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTT
*
15071385 GAACATCCCAATTAACAACATTAATACACCTCAATTACAACGATAAACATCT
131 GAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCT
* *
15071437 CAACTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACAGTTCAATTTACATCATTTGAGC
1 CAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGC
* * * * *
15071502 ACCTCAATTTACAGCAATTAACCACTTCAATTTACATCATTTAAACCCCTCAACTTACAACACTT
66 ACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTT
* * * * *
15071567 TAACATCCCAATTAACAACATTTATACACCGT-AATTGCAGCAATAAACATAT
131 GAACATCCCAATTAACAACATTTATACACC-TCAATTACAACGATAAACATCT
***
15071619 CAATTTCCAACAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGC
1 CAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGC
* * ** *
15071684 ATCTGAATTTACAGTAATTAAACACTTCAATTTATAGCATTTAAACACCTCAACTAACAACACTT
66 ACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTT
* * *
15071749 TAACATCCCAATTAACAACATTTATACTCATCAATTACAACGATAAACATCT
131 GAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCT
*
15071801 CAATTT-TCGGCAACTAAATAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAG
1 CAATTTCT-GGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAG
* * * * * *
15071865 CACCTCAATTTACAACAAATATACACTTCAATTTATAGCATTAAAACACCTCAAATTACAACACT
65 CACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACT
* * * *
15071930 CGAGCATCCCAATTAACAACATTTATACACCTTAATTACAGCGATAAACATCT
130 TGAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCT
** * * ** *
15071983 CAATTTCCAGTAACTAAACAATTTAATTTTTAGCACTTAAACAATTCAATTTACATCATTTGAGC
1 CAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGC
*
15072048 ACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTACACACCT
66 ACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCT
15072098 TTTGAGAAAA
Statistics
Matches: 584, Mismatches: 73, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
181 1 0.00
182 582 1.00
183 1 0.00
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.30
Consensus pattern (182 bp):
CAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGC
ACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTAACAACACTT
GAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCT
Found at i:15073638 original size:13 final size:13
Alignment explanation
Indices: 15073620--15073646 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15073610 GTTTGTTTAC
15073620 GACTTACTAAGCT
1 GACTTACTAAGCT
15073633 GACTTACTAAGCT
1 GACTTACTAAGCT
15073646 G
1 G
15073647 CAAAAGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (13 bp):
GACTTACTAAGCT
Found at i:15074305 original size:40 final size:40
Alignment explanation
Indices: 15074261--15074352 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
15074251 TTTTAGCGGC
15074261 AAACGCCGCTAAAAATCGA-ACACTAGCGGCGCATCTACAA
1 AAACGCCGCTAAAAATCGAGA-ACTAGCGGCGCATCTACAA
* * * **
15074301 AAACGCCGCTAAAGATCGAGAATTAGCGGCGCATTTAGGA
1 AAACGCCGCTAAAAATCGAGAACTAGCGGCGCATCTACAA
*
15074341 AAACGCAGCTAA
1 AAACGCCGCTAA
15074353 TAATAAGCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 44 0.98
41 1 0.02
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.14
Consensus pattern (40 bp):
AAACGCCGCTAAAAATCGAGAACTAGCGGCGCATCTACAA
Found at i:15074521 original size:114 final size:113
Alignment explanation
Indices: 15074362--15074581 Score: 309
Period size: 114 Copynumber: 1.9 Consensus size: 113
15074352 ATAATAAGCA
* *
15074362 TTAGCGGCGATTTATGAAAAGCGCCGCAAAAAACATAAGGTCAACGACG-CTGTTTACTGAGTTT
1 TTAGCGGCGATTTATAAAAAGCGCCGCAAAAAACATAAGGCCAACGACGTC-GTTT-CTGAGTTT
*
15074426 TTGGACCTGTAGCGGCGTTTTTCT-AAAAATGCCGCTAATGCTCGGGGGAC
64 TTGGACCTGTAGCGGCGTTTTT-TGAAAAACGCCGCTAATGCTCGGGGGAC
* * *
15074476 TTAGCGGCGATTTCTAAAAAGCGCCGCAAAAAACCTAAGGCCAACGACGTCGTTTCTGCGTTTTT
1 TTAGCGGCGATTTATAAAAAGCGCCGCAAAAAACATAAGGCCAACGACGTCGTTTCTGAGTTTTT
** * *
15074541 GTCCCTGTTGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTC
66 GGACCTGTAGCGGCGTTTTTTGAAAAACGCCGCTAATGCTC
15074582 CTGCCTTTAG
Statistics
Matches: 94, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
112 1 0.01
113 43 0.46
114 49 0.52
115 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (113 bp):
TTAGCGGCGATTTATAAAAAGCGCCGCAAAAAACATAAGGCCAACGACGTCGTTTCTGAGTTTTT
GGACCTGTAGCGGCGTTTTTTGAAAAACGCCGCTAATGCTCGGGGGAC
Found at i:15074608 original size:41 final size:41
Alignment explanation
Indices: 15074550--15074655 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
15074540 TGTCCCTGTT
* *
15074550 GCGGCGTTTTTTGAAAAGCGCCGCTAATGCTCCTGCCTTTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGATCCTGCCTTTA
* * *
15074591 GCGGCATTTTTTAAAAAGCGCCGCTAATGATCTTGTCTTTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGATCCTGCCTTTA
*
15074632 GCGGCGTTTTCTAAAAAGCGCCGC
1 GCGGCGTTTTTTAAAAAGCGCCGC
15074656 AAAAAAACCT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.31
Consensus pattern (41 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAATGATCCTGCCTTTA
Found at i:15074757 original size:156 final size:153
Alignment explanation
Indices: 15074476--15074774 Score: 429
Period size: 156 Copynumber: 1.9 Consensus size: 153
15074466 CTCGGGGGAC
*
15074476 TTAGCGGCGATTTCTAAAAAGCGCCGCAAAAAACCTAAGGCCAACGACGTCGTTTCTGCGTTTTT
1 TTAGCGGCGATTTCTAAAAAGCGCCGCAAAAAACCTAAGGCCAACGACGCCGTTTCTGCGTTTTT
* * * * * *
15074541 GTCCCTGTTGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTCCTGCCTTTAGCGGCATTTTTTAAA
66 GGCCCTGTTGCGGCGTTTTGTGAAAAGCGCCGCTAATGATCCGGCCGTTAGCGGCATTTTTGAAA
15074606 AAGCGCCGCTAATGATCTTGTCT
131 AAGCGCCGCTAATGATCTTGTCT
* *
15074629 TTAGCGGCGTTTTCTAAAAAGCGCCGCAAAAAAACCTAAGGCCAACGACGCCGTTTTCTGTGTGT
1 TTAGCGGCGATTTCTAAAAAGCGCCGC-AAAAAACCTAAGGCCAACGACGCCG-TTTCTGCGT-T
* * *
15074694 TTTGGGCCT-TTAGCGGCGTTTTGTGAAAAGCGTCGCTAATGATCCGGCCGTTAGCGGCGTTTTT
63 TTTGGCCCTGTT-GCGGCGTTTTGTGAAAAGCGCCGCTAATGATCCGGCCGTTAGCGGCATTTTT
**
15074758 GAGGAAGCGCCGCTAAT
127 GAAAAAGCGCCGCTAAT
15074775 AGTAATAAAA
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
153 26 0.20
154 24 0.19
155 10 0.08
156 68 0.53
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (153 bp):
TTAGCGGCGATTTCTAAAAAGCGCCGCAAAAAACCTAAGGCCAACGACGCCGTTTCTGCGTTTTT
GGCCCTGTTGCGGCGTTTTGTGAAAAGCGCCGCTAATGATCCGGCCGTTAGCGGCATTTTTGAAA
AAGCGCCGCTAATGATCTTGTCT
Found at i:15076616 original size:243 final size:243
Alignment explanation
Indices: 15076188--15076663 Score: 801
Period size: 243 Copynumber: 2.0 Consensus size: 243
15076178 AAAGCGCCGT
* * *
15076188 AAAATACTGTAAGTTGTGAAGAAAACGGCGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGATA
1 AAAATACTGTAAGTTATGAAGAAAACGGCGCCATTTTCTTATTACATTTAGTGGAGTTTTAGATA
* * *
15076253 AAACGCCGCAAGTATGTTTTCTTTGTTACGGAAACGGCGTCGTTTTCCATTGTTATTAGTGGCGT
66 AAACGCCGCAAGTATGTTTTCTTTGTTAAGGAAACAGCGTCGTTTTCCATTGTTATTAGTGGCAT
*
15076318 TACACCCAAAACGCCGCAAATATATTTTAAAGATTACACGAGTTTGCATTAAACGACTGCGTTTG
131 TACACCCAAAACGCCGCAAATATATTTTAAAGATTACACGAGTTTGCATTAAACGACTGCATTTG
*
15076383 ACCTTATATTTAGTGGCACTTATATATAAACGTCGCAAACTCGAATGC
196 ACCTTATATTTAGTGGCACTTATATATAAACGCCGCAAACTCGAATGC
15076431 AAAATACTGTAAGTTATGAAGAAAACGGCGCCATTTTCTTATTACATTTAGTGGAGTTTTAGATA
1 AAAATACTGTAAGTTATGAAGAAAACGGCGCCATTTTCTTATTACATTTAGTGGAGTTTTAGATA
*
15076496 AAACGCCGCAAGTATGTTTTCTTTGTTAAGGAAACAGTGTCGTTTTCCATTGTTATTAGTGGCAT
66 AAACGCCGCAAGTATGTTTTCTTTGTTAAGGAAACAGCGTCGTTTTCCATTGTTATTAGTGGCAT
* * *
15076561 TACACCCAAAACGCCGCAAATATATTTTAAAGTTTATAGGAGTTTG-AGTTAAACGACTGCATTT
131 TACACCCAAAACGCCGCAAATATATTTTAAAGATTACACGAGTTTGCA-TTAAACGACTGCATTT
** *
15076625 GACCTTATATTTAGTGGCGTTTATGTATAAACGCCGCAA
195 GACCTTATATTTAGTGGCACTTATATATAAACGCCGCAA
15076664 CAATCCAAAT
Statistics
Matches: 217, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
242 1 0.00
243 216 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (243 bp):
AAAATACTGTAAGTTATGAAGAAAACGGCGCCATTTTCTTATTACATTTAGTGGAGTTTTAGATA
AAACGCCGCAAGTATGTTTTCTTTGTTAAGGAAACAGCGTCGTTTTCCATTGTTATTAGTGGCAT
TACACCCAAAACGCCGCAAATATATTTTAAAGATTACACGAGTTTGCATTAAACGACTGCATTTG
ACCTTATATTTAGTGGCACTTATATATAAACGCCGCAAACTCGAATGC
Found at i:15077106 original size:19 final size:19
Alignment explanation
Indices: 15077067--15077108 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15077057 CTCTCATCTC
*
15077067 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* *
15077086 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAAAAGTT
15077105 CCCC
1 CCCC
15077109 CACGTAGTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.45, G:0.02, T:0.24
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Found at i:15089298 original size:23 final size:23
Alignment explanation
Indices: 15089261--15089418 Score: 119
Period size: 23 Copynumber: 7.0 Consensus size: 23
15089251 TTTCCAGCAC
* * *
15089261 TTAAACACTTTAATTTACATCAT
1 TTAAACACCTCAATTTACAACAT
* * * *
15089284 TTGAGCACCTCAATTTACAGCAG
1 TTAAACACCTCAATTTACAACAT
**
15089307 TTAAACATTTCAATTTACAACAT
1 TTAAACACCTCAATTTACAACAT
*
15089330 TTAAACACCTCAACTTACAACACT
1 TTAAACACCTCAATTTACAACA-T
*
15089354 TT-AACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAT
* *
15089376 TTATACACCTTAA-TTACAACGA-
1 TTAAACACCTCAATTTACAAC-AT
* *
15089398 -TAAACATCTCAATTTCCAACA
1 TTAAACACCTCAATTTACAACA
15089419 ACTAAACAAT
Statistics
Matches: 105, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
21 10 0.10
22 17 0.16
23 73 0.70
24 5 0.05
ACGTcount: A:0.41, C:0.25, G:0.03, T:0.32
Consensus pattern (23 bp):
TTAAACACCTCAATTTACAACAT
Found at i:15089299 original size:46 final size:46
Alignment explanation
Indices: 15089249--15091017 Score: 536
Period size: 46 Copynumber: 39.4 Consensus size: 46
15089239 TAAACAATTT
* * * *
15089249 AATTTCCAGCACTTAAACACTTT-AATTTACATCATTTGAGCACCTC
1 AATTTACAGCACTTAAACA-TTTCAATTTACAACATTTAAACACCTC
*
15089295 AATTTACAGCAGTTAAACATTTCAATTTACAACATTTAAACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * ** * * *
15089341 AACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTT
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * ** **
15089387 AA-TTACA--ACGATAAACATCTCAATTTCCAACAACTAAACAATTC
1 AATTTACAGCAC-TTAAACATTTCAATTTACAACATTTAAACACCTC
* * *
15089431 AA-TT-CA--ATTTAATACA-TCCACA--TCCAA-A--T-AACA--T-
1 AATTTACAGCACTTAA-ACATTTCA-ATTTACAACATTTAAACACCTC
* * * * *
15089465 AGTTTCCAGCACTTAAACACTTCAATTTACATA-ATTTGAGCACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACA-ACATTTAAACACCTC
* ** * * **
15089511 AAATTACAATAATTAAACAATTCAATTTACAGTATTTAAACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * ** ** * * *
15089557 AACTTACAACACTTTCACATCCCAATTAACAACATTTATACACCTT
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * ** **
15089603 AA-TTACA--ACGATAAACATCTCAATTTCCAACAACTAAACAATTC
1 AATTTACAGCAC-TTAAACATTTCAATTTACAACATTTAAACACCTC
* * *
15089647 AA-TT-CA--ATTTAATACA-TCCACA--TCCAA-A--T-AACA--T-
1 AATTTACAGCACTTAA-ACATTTCA-ATTTACAACATTTAAACACCTC
* * * * *
15089681 AGTTTCCAGCACTTAAACACTTCAATTTACATA-ATTTGAGCACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACA-ACATTTAAACACCTC
* ** * * **
15089727 AAATTACAATAATTAAACAATTCAATTTACAGTATTTAAACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * ** ** * *
15089773 AACTTACAACACTTTCACATCCCAATTAACAACATTTATACACCAT-
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACC-TC
* * ** ** **
15089819 AA-TTACAGCA-ATAAACATCTCAATATT-CGGCAACTAAACAATTC
1 AATTTACAGCACTTAAACATTTCAAT-TTACAACATTTAAACACCTC
* * * * * * *
15089863 AATTTGCAGCACTTAAACACTTGAATTTTCATCATTTTAGCACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
** * * * * * *
15089909 AAAGTACAACAATTAAACAATTCAAATTACAGCAATTAAACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * ** * *
15089955 AACTTACAGCACTTTAACATCCCAATTAACAACATTTATACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * ** **
15090001 AA-TTACAGCGA--TAAACATCTCAATTTCCAGCAACTAAACAATTC
1 AATTTACAGC-ACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * ** * *
15090045 AATTTGCAACACTTAAACATTTCAATTTACGTCATTTGAGCACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * *
15090091 AATTTACAACAATTAAACAATTCAAATTACAGCAATTAAACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * ** ** * * *
15090137 AACTTACAACACTTTCACATCACAATTAACAACATTTATACACCTT
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
** * ** **
15090183 AA-TTACAGCGA--TAAACATCCCAATTT-CTAGCAACTAAACAATTC
1 AATTTACAGC-ACTTAAACATTTCAATTTAC-AACATTTAAACACCTC
* * * * * * *
15090227 AATTTGCAGTACTT--ACACTTCAATTTACATCATTTGAGCACATC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * *
15090271 AATTTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTA
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * * * *** *
15090317 AACTTACAACACTTTAACA-TCCTAGTTAACAATATTTATTGACCTT
1 AATTTACAGCACTTAAACATTTC-AATTTACAACATTTAAACACCTC
* * * * ** *
15090363 AA-TTACAGTGA--TAAACATCTCAATTTCCAGCAACTAAACACTTC
1 AATTTACAG-CACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * *
15090407 AATTTGA-AGCACTTAAACACTTCAATTTACATCATTTGAGCACCTC
1 AATTT-ACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * * * *
15090453 AATTTATAGCAATTAAACACTTCTATTTATAGCCTTTAACCACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * *
15090499 AACTTACAACACTTTAACA-TCCTAATTAACAACATTTATACACCTC
1 AATTTACAGCACTTAAACATTTC-AATTTACAACATTTAAACACCTC
* * ** ** **
15090545 AA-TTATAGCGA--GAAAC-TTGTCAATTT-CTGGCAACTAAACAATTC
1 AATTTACAGC-ACTTAAACATT-TCAATTTAC-AACATTTAAACACCTC
* * * * * *
15090589 AGTTTGCAGCACTTAAACACTTCAATTTACATCATTTGATCACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * *
15090635 AATTTACTGCAATTAAACACTTCAATTTACAGCATTTAAACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * ** * * *
15090681 AACTTACAACACTTTAACATCCCAATTAACAAAATTTATACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * ** ** *
15090727 AA-TTACA--ACGATAAACATCTCAATTTTCAGCAACTAAACAATTT
1 AATTTACAGCAC-TTAAACATTTCAATTTACAACATTTAAACACCTC
* * * *
15090771 AATTTGCAGTACTTAAAACACTTCAATTTACAACATTTAAACACTTC
1 AATTTACAGCACTT-AAACATTTCAATTTACAACATTTAAACACCTC
* * * * * * * *
15090818 AATTTGCTGCACTTTAACACTTCAATTCACAACACTTAAATACTTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
** * * * * *
15090864 AATTTGTAACACTTTAACACTTCAATATACAACATTTAAACACTTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * * *
15090910 AATTTGCAGCACTTTAACATCTCTATTAAAAACATTTATACACCTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* * * * * * * ** *
15090956 AA-TTACTGTAATAAAACATCTCAATTTCCAGCAACTAAACACTTC
1 AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
* *
15091001 AAATTACAGTACTTAAA
1 AATTTACAGCACTTAAA
15091018 TAGGGCTTTA
Statistics
Matches: 1245, Mismatches: 399, Indels: 158
0.69 0.22 0.09
Matches are distributed among these distances:
34 2 0.00
35 6 0.00
36 4 0.00
37 16 0.01
38 18 0.01
39 6 0.00
40 6 0.00
41 10 0.01
42 12 0.01
43 29 0.02
44 211 0.17
45 121 0.10
46 763 0.61
47 41 0.03
ACGTcount: A:0.41, C:0.24, G:0.04, T:0.31
Consensus pattern (46 bp):
AATTTACAGCACTTAAACATTTCAATTTACAACATTTAAACACCTC
Found at i:15089558 original size:23 final size:22
Alignment explanation
Indices: 15089477--15089564 Score: 77
Period size: 23 Copynumber: 3.9 Consensus size: 22
15089467 TTTCCAGCAC
*
15089477 TTAAACACTTCAATTTACATAAT
1 TTAAACACCTCAATTTACAT-AT
* * * *
15089500 TTGAGCACCTCAAATTACAATAA
1 TTAAACACCTCAATTTAC-ATAT
**
15089523 TTAAACAATTCAATTTACAGTAT
1 TTAAACACCTCAATTTACA-TAT
*
15089546 TTAAACACCTCAACTTACA
1 TTAAACACCTCAATTTACA
15089565 ACACTTTCAC
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
22 1 0.02
23 46 0.94
24 2 0.04
ACGTcount: A:0.43, C:0.20, G:0.03, T:0.33
Consensus pattern (22 bp):
TTAAACACCTCAATTTACATAT
Found at i:15089625 original size:216 final size:216
Alignment explanation
Indices: 15089251--15089866 Score: 1081
Period size: 216 Copynumber: 2.9 Consensus size: 216
15089241 AACAATTTAA
* * * ** * *
15089251 TTTCCAGCACTTAAACACTTTAATTTACATCATTTGAGCACCTCAATTTACAGCAGTTAAACATT
1 TTTCCAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAAT
** *
15089316 TCAATTTACAACATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATA
66 TCAATTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATA
15089381 CACCTTAATTACAACGATAAACATCTCAATTTCCAACAACTAAACAATTCAATTCAATTTAATAC
131 CACCTTAATTACAACGATAAACATCTCAATTTCCAACAACTAAACAATTCAATTCAATTTAATAC
15089446 ATCCACATCCAAATAACATAG
196 ATCCACATCCAAATAACATAG
15089467 TTTCCAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAAT
1 TTTCCAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAAT
15089532 TCAATTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATA
66 TCAATTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATA
15089597 CACCTTAATTACAACGATAAACATCTCAATTTCCAACAACTAAACAATTCAATTCAATTTAATAC
131 CACCTTAATTACAACGATAAACATCTCAATTTCCAACAACTAAACAATTCAATTCAATTTAATAC
15089662 ATCCACATCCAAATAACATAG
196 ATCCACATCCAAATAACATAG
15089683 TTTCCAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAAT
1 TTTCCAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAAT
15089748 TCAATTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATA
66 TCAATTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATA
* * * **
15089813 CACCATAATTACAGCAATAAACATCTCAATATT-CGGCAACTAAACAATTCAATT
131 CACCTTAATTACAACGATAAACATCTCAAT-TTCCAACAACTAAACAATTCAATT
15089867 TGCAGCACTT
Statistics
Matches: 384, Mismatches: 15, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
216 382 0.99
217 2 0.01
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (216 bp):
TTTCCAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAAT
TCAATTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATA
CACCTTAATTACAACGATAAACATCTCAATTTCCAACAACTAAACAATTCAATTCAATTTAATAC
ATCCACATCCAAATAACATAG
Found at i:15089774 original size:23 final size:22
Alignment explanation
Indices: 15089693--15089780 Score: 77
Period size: 23 Copynumber: 3.9 Consensus size: 22
15089683 TTTCCAGCAC
*
15089693 TTAAACACTTCAATTTACATAAT
1 TTAAACACCTCAATTTACAT-AT
* * * *
15089716 TTGAGCACCTCAAATTACAATAA
1 TTAAACACCTCAATTTAC-ATAT
**
15089739 TTAAACAATTCAATTTACAGTAT
1 TTAAACACCTCAATTTACA-TAT
*
15089762 TTAAACACCTCAACTTACA
1 TTAAACACCTCAATTTACA
15089781 ACACTTTCAC
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
22 1 0.02
23 46 0.94
24 2 0.04
ACGTcount: A:0.43, C:0.20, G:0.03, T:0.33
Consensus pattern (22 bp):
TTAAACACCTCAATTTACATAT
Found at i:15089939 original size:23 final size:23
Alignment explanation
Indices: 15089907--15090147 Score: 103
Period size: 23 Copynumber: 10.6 Consensus size: 23
15089897 TTTTAGCACC
*
15089907 TCAAAGTACAACAATTAAACAAT
1 TCAAATTACAACAATTAAACAAT
* **
15089930 TCAAATTACAGCAATTAAACACC
1 TCAAATTACAACAATTAAACAAT
* * * *
15089953 TCAACTTACAGCACTTTAAC-AT
1 TCAAATTACAACAATTAAACAAT
* * * * **
15089975 CCCAATTAACAACATTTATACACC
1 TCAAATT-ACAACAATTAAACAAT
* *
15089999 TC-AATTACAGCGA-TAAAC-AT
1 TCAAATTACAACAATTAAACAAT
* * * *
15090019 CTCAATTTCCAGCAACTAAACAAT
1 -TCAAATTACAACAATTAAACAAT
* * * *
15090043 TCAATTTGCAACACTTAAACATT
1 TCAAATTACAACAATTAAACAAT
* ** * * * **
15090066 TCAATTTACGTCATTTGAGCACC
1 TCAAATTACAACAATTAAACAAT
*
15090089 TCAATTTACAACAATTAAACAAT
1 TCAAATTACAACAATTAAACAAT
* **
15090112 TCAAATTACAGCAATTAAACACC
1 TCAAATTACAACAATTAAACAAT
*
15090135 TCAACTTACAACA
1 TCAAATTACAACA
15090148 CTTTCACATC
Statistics
Matches: 158, Mismatches: 54, Indels: 12
0.71 0.24 0.05
Matches are distributed among these distances:
21 6 0.04
22 16 0.10
23 133 0.84
24 3 0.02
ACGTcount: A:0.44, C:0.25, G:0.05, T:0.27
Consensus pattern (23 bp):
TCAAATTACAACAATTAAACAAT
Found at i:15089994 original size:182 final size:181
Alignment explanation
Indices: 15089687--15090822 Score: 1596
Period size: 182 Copynumber: 6.2 Consensus size: 181
15089677 ACATAGTTTC
* * *
15089687 CAGCACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAATTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
* * *
15089752 TTTACAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATACACC
66 ATTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
15089817 AT-AATTACAGCAATAAACATCTCAATATTCGGCAACTAAACAATTCAATTTG
131 -TCAATTACAGCGATAAACATCTCAAT-TTCAGCAACTAAACAATTCAATTTG
* * * **
15089869 CAGCACTTAAACACTTGAATTTTCATCATTTTAGCACCTCAAAGTACAACAATTAAACAATTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
* *
15089934 ATTACAGCAATTAAACACCTCAACTTACAGCACTTTAACATCCCAATTAACAACATTTATACACC
66 ATTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
15089999 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTT-CAGCAACTAAACAATTCAATTTG
* * *
15090051 CAACACTTAAACATTTCAATTTACGTCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
* * *
15090116 ATTACAGCAATTAAACACCTCAACTTACAACACTTTCACATCACAATTAACAACATTTATACACC
66 ATTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
15090181 TTAATTACAGCGATAAACATCCCAATTTCTAGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTC-AGCAACTAAACAATTCAATTTG
* *
15090233 CAGTACTT--ACACTTCAATTTACATCATTTGAGCACATCAATTTACAACAATTAAACAATTC-A
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
* * * * **
15090295 ATTGACAGCATTTAAACACCTAAACTTACAACACTTTAACATCCTAGTTAACAATATTTATTGAC
66 ATT-ACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* * *
15090360 CTTAATTACAGTGATAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTG
130 CTCAATTACAGCGATAAACATCTCAATTT-CAGCAACTAAACAATTCAATTTG
* * * * *
15090413 AAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTATAGCAATTAAACACTTCTA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
* * * * *
15090478 TTTATAGCCTTTAACCACCTCAACTTACAACACTTTAACATCCTAATTAACAACATTTATACACC
66 ATTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * * * *
15090543 TCAATTATAGCGAGAAACTTGTCAATTTCTGGCAACTAAACAATTCAGTTTG
131 TCAATTACAGCGATAAACATCTCAATTTC-AGCAACTAAACAATTCAATTTG
* ** *
15090595 CAGCACTTAAACACTTCAATTTACATCATTTGATCACCTCAATTTACTGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
* *
15090660 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAAAATTTATACACC
66 ATTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
15090725 TCAATTACAACGATAAACATCTCAATTTTCAGCAACTAAACAATTTAATTTG
131 TCAATTACAGCGATAAACATCTCAA-TTTCAGCAACTAAACAATTCAATTTG
* * * * *
15090777 CAGTACTTAAAACACTTCAATTTACAACATTTAAACACTTCAATTT
1 CAGCACTT-AAACACTTCAATTTACATCATTTGAGCACCTCAATTT
15090823 GCTGCACTTT
Statistics
Matches: 853, Mismatches: 90, Indels: 21
0.88 0.09 0.02
Matches are distributed among these distances:
179 4 0.00
180 156 0.18
181 6 0.01
182 647 0.76
183 40 0.05
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (181 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAA
ATTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
TCAATTACAGCGATAAACATCTCAATTTCAGCAACTAAACAATTCAATTTG
Found at i:15090295 original size:23 final size:23
Alignment explanation
Indices: 15090269--15090312 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15090259 TTTGAGCACA
*
15090269 TCAATTTACAACAATTAAACAAT
1 TCAATTGACAACAATTAAACAAT
* *
15090292 TCAATTGACAGCATTTAAACA
1 TCAATTGACAACAATTAAACA
15090313 CCTAAACTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.18, G:0.05, T:0.30
Consensus pattern (23 bp):
TCAATTGACAACAATTAAACAAT
Found at i:15090480 original size:23 final size:23
Alignment explanation
Indices: 15090374--15090914 Score: 102
Period size: 23 Copynumber: 23.7 Consensus size: 23
15090364 ATTACAGTGA
** *
15090374 TAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTATAGCAAT
*
15090397 TAAACACTTCAATTTGA-AGCACT
1 TAAACACTTCAATTT-ATAGCAAT
* * *
15090420 TAAACACTTCAATTTACATCATT
1 TAAACACTTCAATTTATAGCAAT
* * *
15090443 TGAGCACCTCAATTTATAGCAAT
1 TAAACACTTCAATTTATAGCAAT
* **
15090466 TAAACACTTCTATTTATAGCCTT
1 TAAACACTTCAATTTATAGCAAT
* * * * * *
15090489 TAACCACCTCAACTTACAACACT
1 TAAACACTTCAATTTATAGCAAT
* * * * * *
15090512 TTAACA-TCCTAATTAACAACATT
1 TAAACACTTC-AATTTATAGCAAT
* * *
15090535 TATACACCTCAA-TTATAGCGA-
1 TAAACACTTCAATTTATAGCAAT
* * * * *
15090556 GAAAC-TTGTCAATTTCTGGCAAC
1 TAAACACT-TCAATTTATAGCAAT
* * ** *
15090579 TAAACAATTCAGTTTGCAGCACT
1 TAAACACTTCAATTTATAGCAAT
* * *
15090602 TAAACACTTCAATTTACATCATT
1 TAAACACTTCAATTTATAGCAAT
* * *
15090625 TGATCACCTCAATTTACT-GCAAT
1 TAAACACTTCAATTTA-TAGCAAT
* *
15090648 TAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTATAGCAAT
* * * * *
15090671 TAAACACCTCAACTTACAACACT
1 TAAACACTTCAATTTATAGCAAT
* * * * *
15090694 TTAACA-TCCCAATTAACA-AAATT
1 TAAACACT-TCAATTTATAGCAA-T
* * * * *
15090717 TATACACCTCAA-TTACAACGA-
1 TAAACACTTCAATTTATAGCAAT
*
15090738 TAAACA-TCTCAATTT-TCAGCAAC
1 TAAACACT-TCAATTTAT-AGCAAT
* * ** * *
15090761 TAAACAATTTAATTTGCAGTACT
1 TAAACACTTCAATTTATAGCAAT
* * *
15090784 TAAAACACTTCAATTTACAACATT
1 T-AAACACTTCAATTTATAGCAAT
* *
15090808 TAAACACTTCAATTTGCT-GCACT
1 TAAACACTTCAATTT-ATAGCAAT
* * * * *
15090831 TTAACACTTCAATTCACAACACT
1 TAAACACTTCAATTTATAGCAAT
* * * *
15090854 TAAATACTTCAATTTGTAACACT
1 TAAACACTTCAATTTATAGCAAT
* * * * *
15090877 TTAACACTTCAATATACAACATT
1 TAAACACTTCAATTTATAGCAAT
15090900 TAAACACTTCAATTT
1 TAAACACTTCAATTT
15090915 GCAGCACTTT
Statistics
Matches: 366, Mismatches: 128, Indels: 48
0.68 0.24 0.09
Matches are distributed among these distances:
21 16 0.04
22 22 0.06
23 307 0.84
24 21 0.06
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.33
Consensus pattern (23 bp):
TAAACACTTCAATTTATAGCAAT
Found at i:15090607 original size:544 final size:545
Alignment explanation
Indices: 15089691--15090822 Score: 1640
Period size: 544 Copynumber: 2.1 Consensus size: 545
15089681 AGTTTCCAGC
* * * * *
15089691 ACTTAAACACTTCAATTTACATAATTTGAGCACCTCAAATTACAATAATTAAACAATTCAATTTA
1 ACTT-AACACTTCAATTTACATCATTTGAGCACATCAATTTACAACAATTAAACAATTCAATTGA
* * *
15089756 CAGTATTTAAACACCTCAACTTACAACACTTTCACATCCCAATTAACAACATTTATACACCATAA
65 CAGCATTTAAACACCTAAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCATAA
* * *
15089821 TTACAGCAATAAACATCTCAATATTCGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTG
130 TTACAGCAATAAACATCTCAATATTCAGCAACTAAACAATTCAATTTGAAGCACTTAAACACTTC
* *
15089886 AATTTTCATCATTTTAGCACCTCAAAGTACAACAATTAAACAATTCAAATTACAGCAATTAAACA
195 AATTTACATCATTTGAGCACCTCAAAGTACAACAATTAAACAATTCAAATTACAGCAATTAAACA
* *
15089951 CCTCAACTTACAGCACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGATAAA
260 CCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGAGAAA
* *
15090016 CATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACATTTCAATTTACGTCATT
325 CATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACACTTCAATTTACATCATT
15090081 TGAGCACCTCAATTTACAACAATTAAACAATTCAAATTACAGCAATTAAACACCTCAACTTACAA
390 TGAGCACCTCAATTTACAACAATTAAACAATTCAAATTACAGCAATTAAACACCTCAACTTACAA
* * * *
15090146 CACTTTCACATCACAATTAACAACATTTATACACCTTAATTACAGCGATAAACATCCCAA-TTTC
455 CACTTTAACATCACAATTAACAAAATTTATACACCTCAATTACAACGATAAACATCCCAATTTTC
15090210 TAGCAACTAAACAATTCAATTTGCAGT
520 -AGCAACTAAACAATTCAATTTGCAGT
15090237 ACTT-ACACTTCAATTTACATCATTTGAGCACATCAATTTACAACAATTAAACAATTCAATTGAC
1 ACTTAACACTTCAATTTACATCATTTGAGCACATCAATTTACAACAATTAAACAATTCAATTGAC
* * * ** *
15090301 AGCATTTAAACACCTAAACTTACAACACTTTAACATCCTAGTTAACAATATTTATTGACCTTAAT
66 AGCATTTAAACACCTAAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCATAAT
** *
15090366 TACAGTGATAAACATCTCAAT-TTCCAGCAACTAAACACTTCAATTTGAAGCACTTAAACACTTC
131 TACAGCAATAAACATCTCAATATT-CAGCAACTAAACAATTCAATTTGAAGCACTTAAACACTTC
** * * * * * * ** *
15090430 AATTTACATCATTTGAGCACCTCAATTTATAGCAATTAAACACTTCTATTTATAGCCTTTAACCA
195 AATTTACATCATTTGAGCACCTCAAAGTACAACAATTAAACAATTCAAATTACAGCAATTAAACA
* *
15090495 CCTCAACTTACAACACTTTAACATCCTAATTAACAACATTTATACACCTCAATTATAGCGAGAAA
260 CCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGAGAAA
* * ** * *
15090560 CTTGTCAATTTCTGGCAACTAAACAATTCAGTTTGCAGCACTTAAACACTTCAATTTACATCATT
325 CATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACACTTCAATTTACATCATT
* ** * * *
15090625 TGATCACCTCAATTTACTGCAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAA
390 TGAGCACCTCAATTTACAACAATTAAACAATTCAAATTACAGCAATTAAACACCTCAACTTACAA
* *
15090690 CACTTTAACATCCCAATTAACAAAATTTATACACCTCAATTACAACGATAAACATCTCAATTTTC
455 CACTTTAACATCACAATTAACAAAATTTATACACCTCAATTACAACGATAAACATCCCAATTTTC
*
15090755 AGCAACTAAACAATTTAATTTGCAGT
520 AGCAACTAAACAATTCAATTTGCAGT
* * * *
15090781 ACTTAAAACACTTCAATTTACAACATTTAAACACTTCAATTT
1 ACTT--AACACTTCAATTTACATCATTTGAGCACATCAATTT
15090823 GCTGCACTTT
Statistics
Matches: 519, Mismatches: 62, Indels: 9
0.88 0.11 0.02
Matches are distributed among these distances:
543 2 0.00
544 478 0.92
545 4 0.01
546 4 0.01
547 31 0.06
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (545 bp):
ACTTAACACTTCAATTTACATCATTTGAGCACATCAATTTACAACAATTAAACAATTCAATTGAC
AGCATTTAAACACCTAAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCATAAT
TACAGCAATAAACATCTCAATATTCAGCAACTAAACAATTCAATTTGAAGCACTTAAACACTTCA
ATTTACATCATTTGAGCACCTCAAAGTACAACAATTAAACAATTCAAATTACAGCAATTAAACAC
CTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGAGAAAC
ATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACACTTCAATTTACATCATTT
GAGCACCTCAATTTACAACAATTAAACAATTCAAATTACAGCAATTAAACACCTCAACTTACAAC
ACTTTAACATCACAATTAACAAAATTTATACACCTCAATTACAACGATAAACATCCCAATTTTCA
GCAACTAAACAATTCAATTTGCAGT
Found at i:15090707 original size:69 final size:69
Alignment explanation
Indices: 15090564--15090707 Score: 159
Period size: 69 Copynumber: 2.1 Consensus size: 69
15090554 GAGAAACTTG
* * * * * *
15090564 TCAATTTCTGGCAACTAAACAATTCAGTTTGCAGCACTTAAACACTTCAATTTACATCATTTGAT
1 TCAATTTCTGGCAACTAAACAATTCAATTTACAGCACTTAAACACCTCAACTTACAACATTTGAA
15090629 CACC
66 CACC
* * *
15090633 TCAATTTACT-GCAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTT-
1 TCAATTT-CTGGCAACTAAACAATTCAATTTACAGCACTTAAACACCTCAACTTACAACA-TTTG
15090696 AACATCC
64 AACA-CC
15090703 -CAATT
1 TCAATT
15090708 AACAAAATTT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
69 56 0.89
70 7 0.11
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (69 bp):
TCAATTTCTGGCAACTAAACAATTCAATTTACAGCACTTAAACACCTCAACTTACAACATTTGAA
CACC
Found at i:15090906 original size:69 final size:70
Alignment explanation
Indices: 15090601--15090913 Score: 166
Period size: 69 Copynumber: 4.5 Consensus size: 70
15090591 TTTGCAGCAC
* * * * * ** *
15090601 TTAAACACTTCAATTTACATCA-TTTGATCACCTCAATTTACTGCAATT-AAACACTTCAATTTA
1 TTAAACACTTCAATATACAACACTTT-AACACTTCAATTCACAACACTTAAAACACTTCAATTTA
*
15090664 CAGCAT
65 CAACAT
* * * * * * *
15090670 TTAAACACCTCAACT-TACAACACTTTAACA-TCCCAATTAACAA-AATTTATACACCTCAA-TT
1 TTAAACACTTCAA-TATACAACACTTTAACACT-TCAATTCACAACACTTAAAACACTTCAATTT
15090731 ACAACGA-
64 ACAAC-AT
* * * * * * ** **
15090738 -TAAACA-TCTCAATTTTCAGCAAC-TAAACAATTTAATTTGCAGTACTTAAAACACTTCAATTT
1 TTAAACACT-TCAATATACAAC-ACTTTAACACTTCAATTCACAACACTTAAAACACTTCAATTT
15090800 ACAACAT
64 ACAACAT
* * ** * **
15090807 TTAAACACTTCAATTTGCTGCACTTTAACACTTCAATTCACAACACTT-AAATACTTCAATTTGT
1 TTAAACACTTCAATATACAACACTTTAACACTTCAATTCACAACACTTAAAACACTTCAATTTAC
15090871 AACACT
66 AACA-T
15090877 TT-AACACTTCAATATACAACA-TTTAAACACTTCAATT
1 TTAAACACTTCAATATACAACACTTT-AACACTTCAATT
15090914 TGCAGCACTT
Statistics
Matches: 187, Mismatches: 40, Indels: 34
0.72 0.15 0.13
Matches are distributed among these distances:
66 1 0.01
67 25 0.13
68 29 0.16
69 91 0.49
70 40 0.21
71 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (70 bp):
TTAAACACTTCAATATACAACACTTTAACACTTCAATTCACAACACTTAAAACACTTCAATTTAC
AACAT
Found at i:15090928 original size:23 final size:23
Alignment explanation
Indices: 15090787--15090928 Score: 153
Period size: 23 Copynumber: 6.2 Consensus size: 23
15090777 CAGTACTTAA
*
15090787 AACACTTCAATTTACAACA-TTT
1 AACACTTCAATTTGCAACACTTT
**
15090809 AAACACTTCAATTTGCTGCACTTT
1 -AACACTTCAATTTGCAACACTTT
** *
15090833 AACACTTCAATTCACAACACTTA
1 AACACTTCAATTTGCAACACTTT
* *
15090856 AATACTTCAATTTGTAACACTTT
1 AACACTTCAATTTGCAACACTTT
* *
15090879 AACACTTCAATATACAACA-TTT
1 AACACTTCAATTTGCAACACTTT
*
15090901 AAACACTTCAATTTGCAGCACTTT
1 -AACACTTCAATTTGCAACACTTT
15090925 AACA
1 AACA
15090929 TCTCTATTAA
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
22 3 0.03
23 87 0.91
24 6 0.06
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.34
Consensus pattern (23 bp):
AACACTTCAATTTGCAACACTTT
Done.