Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30015117
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1306243 characters in sequence are not A, C, G, or T
File 47 of 85
Found at i:15720649 original size:27 final size:27
Alignment explanation
Indices: 15720613--15720714 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 27
15720603 CCCTAAAATA
15720613 GGTAAAATGACCAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
15720640 GGTAAAATGATCGAAATACCCCGATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
15720667 GGTAAAATGATCGAAATACCCCCATAA
1 GGTAAAATGACCAAAATACCCCCATAG
* *
15720694 GGTGAAGTGACCAAAATACCC
1 GGTAAAATGACCAAAATACCC
15720715 TAGGAGATGA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.17
Consensus pattern (27 bp):
GGTAAAATGACCAAAATACCCCCATAG
Found at i:15722191 original size:3 final size:3
Alignment explanation
Indices: 15722183--15722225 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
15722173 TATTCTCTTC
**
15722183 TAT TAT TAT TGC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
15722226 TCATAACACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:15727857 original size:15 final size:16
Alignment explanation
Indices: 15727828--15727858 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15727818 CAATATTTCA
15727828 CTTCCTTTATTCTCTT
1 CTTCCTTTATTCTCTT
15727844 CTTCCTTT-TTCTCTT
1 CTTCCTTTATTCTCTT
15727859 TTTCTTCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTCCTTTATTCTCTT
Found at i:15729078 original size:15 final size:16
Alignment explanation
Indices: 15729049--15729079 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15729039 CAATATTTCA
15729049 CTTCCTTTATTCTCTT
1 CTTCCTTTATTCTCTT
15729065 CTTCCTTT-TTCTCTT
1 CTTCCTTTATTCTCTT
15729080 TTTCTTCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTCCTTTATTCTCTT
Found at i:15741291 original size:14 final size:13
Alignment explanation
Indices: 15741273--15741300 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15741263 CTTTTTTTTT
15741273 CTTTTTTTTGAAA
1 CTTTTTTTTGAAA
15741286 CTTTTTTTTGAAA
1 CTTTTTTTTGAAA
15741299 CT
1 CT
15741301 CCTTTTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.11, G:0.07, T:0.61
Consensus pattern (13 bp):
CTTTTTTTTGAAA
Found at i:15745776 original size:18 final size:18
Alignment explanation
Indices: 15745753--15745793 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
15745743 AAAGTCGTAT
*
15745753 GAAAAGATAAGAGAAAAA
1 GAAAAGAAAAGAGAAAAA
*
15745771 GAAAAGAAAAGTGAAAAA
1 GAAAAGAAAAGAGAAAAA
15745789 GAAAA
1 GAAAA
15745794 AACAAAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.05
Consensus pattern (18 bp):
GAAAAGAAAAGAGAAAAA
Found at i:15748351 original size:20 final size:20
Alignment explanation
Indices: 15748326--15748363 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15748316 TAACAGCTGC
15748326 TGGCCTTTAATTCAACTTGT
1 TGGCCTTTAATTCAACTTGT
15748346 TGGCCTTTAATTCAACTT
1 TGGCCTTTAATTCAACTT
15748364 CATAACAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (20 bp):
TGGCCTTTAATTCAACTTGT
Found at i:15748588 original size:19 final size:19
Alignment explanation
Indices: 15748561--15748653 Score: 68
Period size: 19 Copynumber: 5.1 Consensus size: 19
15748551 TGATTTAAGC
*
15748561 AACTAAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
15748580 AACTTAATTGACTAAGATG
1 AACTTAATTAACTAAGATG
* * * *
15748599 -A-GTAATTTATTCCAG-T-
1 AACTTAATTAACT-AAGATG
*
15748615 AACTTAAGTAACTAAGATG
1 AACTTAATTAACTAAGATG
* *
15748634 AACTCAATTAACTAATATG
1 AACTTAATTAACTAAGATG
15748653 A
1 A
15748654 GTAATTTATT
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
17 11 0.20
18 10 0.18
19 34 0.62
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:15750835 original size:27 final size:27
Alignment explanation
Indices: 15750778--15751187 Score: 421
Period size: 27 Copynumber: 15.2 Consensus size: 27
15750768 TAATGGGCCT
* *
15750778 AAATGACCGAAATACCCT-GAAGGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
15750804 AAATGACTGAAATACCCTCAAAGGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
*
15750831 AAATGATTGAAATACCCTCAAAGGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
* ** *
15750858 AAATAACTGAAATACCCTTGAATGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
*
15750885 AAATGA-TCGAAATACCC-CTGAAGGGTA
1 AAATGACT-GAAATACCCTC-AAAGGGTA
*
15750912 AAATGA-TCGAAATACCCTCGAAGGGTA
1 AAATGACT-GAAATACCCTCAAAGGGTA
*
15750939 AAATGACTGAAATAACCTCAAAGGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
* *
15750966 AAAT-AATCGAAATACCCTCAAAAGGTA
1 AAATGACT-GAAATACCCTCAAAGGGTA
* *
15750993 AAATGACCGAAATACCCTCAAAAGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
*
15751020 AAATGA-TCGAAATACCC-CTGAAGGGTA
1 AAATGACT-GAAATACCCTC-AAAGGGTA
* *
15751047 AAATGACTAAAATACCCCTGAAA-GGTA
1 AAATGACTGAAATA-CCCTCAAAGGGTA
*
15751074 AAATGA-TCGAAATACCCTCAAAGAGTA
1 AAATGACT-GAAATACCCTCAAAGGGTA
**
15751101 AAATGACCAAAATACTCC-CAAAGGGTA
1 AAATGACTGAAATAC-CCTCAAAGGGTA
15751128 AAATGA-TCGAAATACCC-CAGAAGGGTA
1 AAATGACT-GAAATACCCTCA-AAGGGTA
** * *
15751155 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCTCAAAGGGTA
15751182 AAATGA
1 AAATGA
15751188 TTGTTATGCC
Statistics
Matches: 329, Mismatches: 35, Indels: 39
0.82 0.09 0.10
Matches are distributed among these distances:
26 33 0.10
27 283 0.86
28 13 0.04
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCAAAGGGTA
Found at i:15750867 original size:54 final size:54
Alignment explanation
Indices: 15750778--15751188 Score: 487
Period size: 54 Copynumber: 7.6 Consensus size: 54
15750768 TAATGGGCCT
*
15750778 AAATGACCGAAATACCCT-GAAGGGTAAAATGA-CTGAAATACCCTCAAAGGGTA
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGATC-GAAATACCCTCAAAGGGTA
** * ** *
15750831 AAATGATTGAAATACCCTCAAAGGGTAAAAT-AACTGAAATACCCTTGAATGGTA
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGATC-GAAATACCCTCAAAGGGTA
* * *
15750885 AAATGATCGAAATACCC-CTGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTC-AAAGGGTAAAATGATCGAAATACCCTCAAAGGGTA
* * * *
15750939 AAATGACTGAAATAACCTCAAAGGGTAAAATAATCGAAATACCCTCAAAAGGTA
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGATCGAAATACCCTCAAAGGGTA
* *
15750993 AAATGACCGAAATACCCTCAAAAGGTAAAATGATCGAAATACCC-CTGAAGGGTA
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGATCGAAATACCCTC-AAAGGGTA
** * *
15751047 AAATGACTAAAATACCCCTGAAA-GGTAAAATGATCGAAATACCCTCAAAGAGTA
1 AAATGACCGAAATA-CCCTCAAAGGGTAAAATGATCGAAATACCCTCAAAGGGTA
*
15751101 AAATGACCAAAATACTCC-CAAAGGGTAAAATGATCGAAATACCC-CAGAAGGGTA
1 AAATGACCGAAATAC-CCTCAAAGGGTAAAATGATCGAAATACCCTCA-AAGGGTA
* * *
15751155 AAATGACCAAAATACCCCCATAGGGTAAAATGAT
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGAT
15751189 TGTTATGCCC
Statistics
Matches: 313, Mismatches: 33, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.09
54 275 0.88
55 11 0.04
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (54 bp):
AAATGACCGAAATACCCTCAAAGGGTAAAATGATCGAAATACCCTCAAAGGGTA
Found at i:15751491 original size:26 final size:26
Alignment explanation
Indices: 15751371--15751486 Score: 151
Period size: 26 Copynumber: 4.5 Consensus size: 26
15751361 TGTTACCGGT
* * **
15751371 AGCTTTGTTGCGTTACTATTACCGAT
1 AGCTTTGCTGCGTTACTATTACTGGC
* *
15751397 AGCTTTACTGCGTTACTATTACTAGC
1 AGCTTTGCTGCGTTACTATTACTGGC
* *
15751423 AGCTTTGTTGCGTTACTGTTACTGGC
1 AGCTTTGCTGCGTTACTATTACTGGC
*
15751449 AGCTTTGCTGCGTTATTATTACTGGC
1 AGCTTTGCTGCGTTACTATTACTGGC
15751475 AGCTTTGCTGCG
1 AGCTTTGCTGCG
15751487 ATATTGGTGT
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (26 bp):
AGCTTTGCTGCGTTACTATTACTGGC
Found at i:15751626 original size:30 final size:30
Alignment explanation
Indices: 15751592--15751651 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
15751582 ACTGCATTGT
** *
15751592 ACTGTTACTGTGTTGGGCTAGGGCCCACAC
1 ACTGTTACTGTAATGGGCTAAGGCCCACAC
*
15751622 ACTGTTACTGTAATGGGCTAAGGCTCACAC
1 ACTGTTACTGTAATGGGCTAAGGCCCACAC
15751652 TATACTGGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.27
Consensus pattern (30 bp):
ACTGTTACTGTAATGGGCTAAGGCCCACAC
Found at i:15754319 original size:32 final size:32
Alignment explanation
Indices: 15754278--15754341 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
15754268 AATCACTATG
15754278 AGTAATCTTGTGACAATTACATAATAATCCAA
1 AGTAATCTTGTGACAATTACATAATAATCCAA
15754310 AGTAATCTTGTGACAATTACATAATAATCCAA
1 AGTAATCTTGTGACAATTACATAATAATCCAA
15754342 GAAACATACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (32 bp):
AGTAATCTTGTGACAATTACATAATAATCCAA
Found at i:15754916 original size:18 final size:18
Alignment explanation
Indices: 15754873--15754909 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
15754863 GCACTCTTTC
*
15754873 TTTTCT-TTCTTCAATCT
1 TTTTCTCTTATTCAATCT
15754890 TTTTCTCTTATTCAAT-T
1 TTTTCTCTTATTCAATCT
15754907 TTT
1 TTT
15754910 GTTTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTCTCTTATTCAATCT
Found at i:15756889 original size:20 final size:20
Alignment explanation
Indices: 15756864--15756901 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15756854 TAACATCTAC
15756864 TGGCCTTTAATTCAACTTGT
1 TGGCCTTTAATTCAACTTGT
15756884 TGGCCTTTAATTCAACTT
1 TGGCCTTTAATTCAACTT
15756902 CATAACAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (20 bp):
TGGCCTTTAATTCAACTTGT
Found at i:15757161 original size:19 final size:19
Alignment explanation
Indices: 15757134--15757172 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15757124 TTATTCCAAC
* *
15757134 AACTTAATTACCTAAGATG
1 AACTCAATTAACTAAGATG
15757153 AACTCAATTAACTAAGATG
1 AACTCAATTAACTAAGATG
15757172 A
1 A
15757173 GTAATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTCAATTAACTAAGATG
Found at i:15765873 original size:16 final size:16
Alignment explanation
Indices: 15765852--15765894 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
15765842 ATTAGAATCT
15765852 TTACTCGCTTATTTAC
1 TTACTCGCTTATTTAC
* *
15765868 TTACTCACTTGTTTAC
1 TTACTCGCTTATTTAC
*
15765884 TTACTTGCTTA
1 TTACTCGCTTA
15765895 CTAAAATAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.19, C:0.23, G:0.07, T:0.51
Consensus pattern (16 bp):
TTACTCGCTTATTTAC
Found at i:15766226 original size:50 final size:50
Alignment explanation
Indices: 15766149--15766385 Score: 267
Period size: 50 Copynumber: 4.6 Consensus size: 50
15766139 TTCTGTACTA
* * * * **
15766149 CCAATGCCATATCCTAGATATGCTCTTACATGGGAGTTCTCATATCAGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
* ** * *
15766199 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
* * *
15766249 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
* * *
15766299 CCAATGCCATGTCCCAAACATGGTCTTAAATGAGACCTCTCATAATCTCAGCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TCA--G-TG
15766355 CCAATGCCATGTCCCAGACATGGTCTTACAT
1 CCAATGCCATGTCCCAGACATGGTCTTACAT
15766386 AGGATCTCAT
Statistics
Matches: 158, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
50 124 0.78
53 2 0.01
55 1 0.01
56 31 0.20
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
Found at i:15770159 original size:51 final size:49
Alignment explanation
Indices: 15770079--15770266 Score: 216
Period size: 51 Copynumber: 3.7 Consensus size: 49
15770069 NNNNNNNNNN
* * *
15770079 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-AG-T-TTGGT
* * *
15770130 CACATGTGTAATACTATGTGCAGGCTACTATGTGTACCGGAAGGTTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA-G-TTTGGT
* * *
15770181 CACGTGTGTAGTACTATGTGCAAGCTACTACGTGAACCGGAAAGTTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AAGTTTGGT
* *
15770231 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
15770267 TGGAATGATA
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
50 37 0.32
51 74 0.63
52 6 0.05
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGTTTGGT
Found at i:15776804 original size:50 final size:54
Alignment explanation
Indices: 15776727--15776861 Score: 163
Period size: 56 Copynumber: 2.6 Consensus size: 54
15776717 CATCTCGGAC
* * *
15776727 GCCATGT-CCAAACATGGTCTTACATGGGA-C-CTC-TCATCTC-GATGCTAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATAATCTCAGATGCCAAT
* *
15776776 GCCATGTCCCAGACATAGTCTTAAATGGGAGCTCTCATAATCTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATAATCTC-A-GATGCCAAT
*
15776832 GCCATGTCCCAGGCATGGTCTTACATGGGA
1 GCCATGTCCCAGACATGGTCTTACATGGGA
15776862 TATTATTCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
49 7 0.10
50 19 0.27
51 1 0.01
52 3 0.04
53 6 0.08
56 35 0.49
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (54 bp):
GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATAATCTCAGATGCCAAT
Found at i:15779498 original size:11 final size:10
Alignment explanation
Indices: 15779482--15779521 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
15779472 AAAGAATTAC
*
15779482 AAAAAAATACG
1 AAAAAAA-AAG
*
15779493 AAAAAAAAGG
1 AAAAAAAAAG
15779503 AAAAAAAAAG
1 AAAAAAAAAG
15779513 AAAAAAAAA
1 AAAAAAAAA
15779522 TTTGTAGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 20 0.74
11 7 0.26
ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:15780887 original size:50 final size:50
Alignment explanation
Indices: 15780829--15781022 Score: 176
Period size: 50 Copynumber: 3.9 Consensus size: 50
15780819 TATTGAGGTT
* *
15780829 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGTATTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAC
* ** ** *
15780879 ATGAGAGGTCCCTCGTAAGACCATGTCTAAGACATGGCACGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAC
** * * * *
15780929 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGGCA--GTAC
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AC
* * ** * * *
15780978 AGGAAACATCCCATGTAAGACCATGTCTGGGACATGACTTTGGCA
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
15781023 TGTTATTATC
Statistics
Matches: 117, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
48 1 0.01
49 39 0.33
50 77 0.66
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAC
Found at i:15781570 original size:10 final size:10
Alignment explanation
Indices: 15781555--15781614 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 10
15781545 GGTGATAACA
15781555 TATATATATT
1 TATATATATT
15781565 TATATATTATT
1 TATATA-TATT
*
15781576 AATAT-TATT
1 TATATATATT
*
15781585 TATAAATA-T
1 TATATATATT
15781594 TATA-ATAATT
1 TATATAT-ATT
15781604 TATATTATATT
1 TATA-TATATT
15781615 ATTATGATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
8 2 0.05
9 13 0.32
10 13 0.32
11 11 0.27
12 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TATATATATT
Found at i:15781604 original size:19 final size:21
Alignment explanation
Indices: 15781558--15781618 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 21
15781548 GATAACATAT
15781558 ATATATTTAT--ATATTATTA
1 ATATATTTATAAATATTATTA
15781577 ATATTATTTATAAATATTA-TA
1 ATA-TATTTATAAATATTATTA
*
15781598 ATA-ATTTATATTATATTATTA
1 ATATATTTATA-AATATTATTA
15781619 TGATATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 10 0.28
20 13 0.36
21 7 0.19
22 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATATTTATAAATATTATTA
Found at i:15781710 original size:99 final size:99
Alignment explanation
Indices: 15781594--15781791 Score: 369
Period size: 99 Copynumber: 2.0 Consensus size: 99
15781584 TTATAAATAT
**
15781594 TATAATAATTTATATTATATTATTATGATATAATAAAACATTATAAGCCATTATCATTTTATTTC
1 TATAATAAAGTATATTATATTATTATGATATAATAAAACATTATAAGCCATTATCATTTTATTTC
*
15781659 CTTCATCTTTTATCACTGAAACTAAAAAACAGAA
66 CTTCATCTTTTATCACTGAAACTAAAAAAAAGAA
15781693 TATAATAAAGTATATTATATTATTATGATATAATAAAACATTATAAGCCATTATCATTTTATTTC
1 TATAATAAAGTATATTATATTATTATGATATAATAAAACATTATAAGCCATTATCATTTTATTTC
15781758 CTTCATCTTTTATCACTGAAACTAAAAAAAAGAA
66 CTTCATCTTTTATCACTGAAACTAAAAAAAAGAA
15781792 AAAGAAAGAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 96 1.00
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.40
Consensus pattern (99 bp):
TATAATAAAGTATATTATATTATTATGATATAATAAAACATTATAAGCCATTATCATTTTATTTC
CTTCATCTTTTATCACTGAAACTAAAAAAAAGAA
Found at i:15783038 original size:16 final size:16
Alignment explanation
Indices: 15783017--15783048 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15783007 GTTTTGTTGC
15783017 TAATTTTACTTTTTCA
1 TAATTTTACTTTTTCA
15783033 TAATTTTACTTTTTCA
1 TAATTTTACTTTTTCA
15783049 CTTTCAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (16 bp):
TAATTTTACTTTTTCA
Found at i:15783330 original size:51 final size:51
Alignment explanation
Indices: 15783272--15783466 Score: 261
Period size: 51 Copynumber: 3.8 Consensus size: 51
15783262 GATACCGGTT
* *
15783272 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTA
* * *
15783323 CACATAGTAGCCTGCACATAGTACTACATACGTGATCA-AAGCTATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATCTGGTA
* * * *
15783374 CTCATAGTAGCCTGTACATAGTACTACACATGCGACCTATCA-T-TCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCTGGTA
*
15783424 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
15783467 TTCAATTTCA
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
49 4 0.03
50 41 0.33
51 76 0.62
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTA
Found at i:15783451 original size:101 final size:102
Alignment explanation
Indices: 15783274--15783458 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
15783264 TACCGGTTCA
*
15783274 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATACACATAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACATAGTAGCCTGCA
*
15783339 CATAGTACTACATACGTGATCAAAGCTATCTGGTACT
66 CATAGTACTACACACGTGATCAAAGCTATCTGGTACT
* * *
15783376 CATAGTAGCCTGTACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCTGATACACATAGTAGCCTGC
15783439 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
15783459 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
101 39 0.51
102 34 0.44
103 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACATAGTAGCCTGCA
CATAGTACTACACACGTGATCAAAGCTATCTGGTACT
Found at i:15783481 original size:101 final size:102
Alignment explanation
Indices: 15783269--15783492 Score: 274
Period size: 101 Copynumber: 2.2 Consensus size: 102
15783259 AATGATACCG
*
15783269 GTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATACACATAGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACATAGTAGC
* * **
15783334 CTGCACATAGTACTACATACGTGATCAAAGCTATCTG
66 CTGCACATAGTACTACACACGTGACCAAAGCTATCAA
* * * * *
15783371 GTACTCATAGTAGCCTGTACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAG
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCTGATACACATAGTAG
* *
15783434 CCTGCACATAGTACTACACACGTGACCATCA-CTTTCAA
65 CCTGCACATAGTACTACACACGTGACCA-AAGCTATCAA
* * *
15783472 TTTCACATAGTGGCCTACACA
1 GTTCACATAGTAGCCTGCACA
15783493 CAGTCCATGC
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
101 60 0.59
102 38 0.37
103 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACATAGTAGC
CTGCACATAGTACTACACACGTGACCAAAGCTATCAA
Found at i:15785428 original size:25 final size:25
Alignment explanation
Indices: 15785394--15785459 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
15785384 GCTCTGTGCC
* **
15785394 TAGCAGGCTTTATGCTGGTGAATTA
1 TAGCAGGCTTTATGCCGGTGAACCA
* *
15785419 TAGCAGGCTTAATGCCGGTGTACCA
1 TAGCAGGCTTTATGCCGGTGAACCA
*
15785444 TATCAGGCTTTATGCC
1 TAGCAGGCTTTATGCC
15785460 TAGCAGGCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (25 bp):
TAGCAGGCTTTATGCCGGTGAACCA
Found at i:15785476 original size:41 final size:41
Alignment explanation
Indices: 15785419--15785522 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
15785409 TGGTGAATTA
15785419 TAGCAGGCTTAATGCCGGTGTACCATATCAGGCTTTATGCC
1 TAGCAGGCTTAATGCCGGTGTACCATATCAGGCTTTATGCC
** * * *
15785460 TAGCAGGCTTCGTGCCGGTGTATCATATCTGGCTTTGTGCC
1 TAGCAGGCTTAATGCCGGTGTACCATATCAGGCTTTATGCC
* * * *
15785501 TAGAAGGATTTATGCCAGTGTA
1 TAGCAGGCTTAATGCCGGTGTA
15785523 TTTTAATAAG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGTACCATATCAGGCTTTATGCC
Found at i:15799910 original size:24 final size:24
Alignment explanation
Indices: 15799883--15799929 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
15799873 TTATAATCGA
*
15799883 ATACCCCCATAGGTTAAAATGACC
1 ATACCCCCATAGGGTAAAATGACC
15799907 ATACCCCCATAGGGTAAAATGAC
1 ATACCCCCATAGGGTAAAATGAC
15799930 TGAAATACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.19
Consensus pattern (24 bp):
ATACCCCCATAGGGTAAAATGACC
Found at i:15802215 original size:24 final size:24
Alignment explanation
Indices: 15802167--15802213 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15802157 ACTGGTCATA
*
15802167 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
15802191 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
15802214 GGGATTTCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:15802878 original size:28 final size:27
Alignment explanation
Indices: 15802827--15802902 Score: 107
Period size: 28 Copynumber: 2.8 Consensus size: 27
15802817 TGGTATGATT
*
15802827 GAAATACCCCCATAGGGTAGAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
*
15802854 GAAATACCCCTTATAGGGTAAAATGACC
1 GAAATACCCC-CATAGGGTAAAATGACC
* *
15802882 GAAATACTCCCAAAGGGTAAA
1 GAAATACCCCCATAGGGTAAA
15802903 TTACTATTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 19 0.44
28 24 0.56
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACC
Found at i:15809857 original size:39 final size:39
Alignment explanation
Indices: 15809787--15809869 Score: 107
Period size: 39 Copynumber: 2.1 Consensus size: 39
15809777 TTCTCACAAC
* * *
15809787 CTCTTTTTCTTTTTCGATTTCTTTCTCTTTTCTCTCACG
1 CTCTTTTTCTTTTTCAAGTTCTTTCTCTTTTCTATCACG
15809826 CTCTTTTTCTTTTTCAAGTTCAATTT-T-TTTTCTATCACG
1 CTCTTTTTCTTTTTCAAGTTC--TTTCTCTTTTCTATCACG
15809865 CTCTT
1 CTCTT
15809870 CTTTTTCGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
39 35 0.90
40 1 0.03
41 3 0.08
ACGTcount: A:0.10, C:0.25, G:0.05, T:0.60
Consensus pattern (39 bp):
CTCTTTTTCTTTTTCAAGTTCTTTCTCTTTTCTATCACG
Found at i:15813454 original size:30 final size:30
Alignment explanation
Indices: 15813420--15813477 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
15813410 CTGAATTAAT
* *
15813420 GCATGAATATGTTTAAGGAGCTGAATGGAG
1 GCATGAATATATTTAAGGAGCTAAATGGAG
* * *
15813450 GCATGCATGTATTTAGGGAGCTAAATGG
1 GCATGAATATATTTAAGGAGCTAAATGG
15813478 GGATGCTAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.33, T:0.28
Consensus pattern (30 bp):
GCATGAATATATTTAAGGAGCTAAATGGAG
Found at i:15818426 original size:30 final size:30
Alignment explanation
Indices: 15818392--15818449 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
15818382 CTGAATTAAT
*
15818392 GCATGAATATGTTTAAGGAGCTAAATGGAG
1 GCATGAATATATTTAAGGAGCTAAATGGAG
* * * *
15818422 GCATGCATGTATTTAGGGAGCTGAATGG
1 GCATGAATATATTTAAGGAGCTAAATGG
15818450 GGATGCTAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.33, T:0.28
Consensus pattern (30 bp):
GCATGAATATATTTAAGGAGCTAAATGGAG
Found at i:15819198 original size:20 final size:21
Alignment explanation
Indices: 15819165--15819209 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
15819155 AAACATTATG
15819165 TTTT-TTTTATTTTATTAACC
1 TTTTATTTTATTTTATTAACC
*
15819185 TTTTATTTTA-TTTATTAACT
1 TTTTATTTTATTTTATTAACC
15819205 TTTTA
1 TTTTA
15819210 ATTAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTATTTTATTTTATTAACC
Found at i:15820526 original size:21 final size:21
Alignment explanation
Indices: 15820500--15820542 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
15820490 GCCACATGAA
**
15820500 GCCATAATGATGTTCACACAT
1 GCCATAAACATGTTCACACAT
15820521 GCCATAAACATGTTCACACAT
1 GCCATAAACATGTTCACACAT
15820542 G
1 G
15820543 GAATTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (21 bp):
GCCATAAACATGTTCACACAT
Found at i:15822110 original size:19 final size:19
Alignment explanation
Indices: 15822086--15822122 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
15822076 ACAGATCATT
15822086 AAACAAAGATGCATTTAAA
1 AAACAAAGATGCATTTAAA
15822105 AAACAAAGATGCATTTAA
1 AAACAAAGATGCATTTAA
15822123 CAAATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.22
Consensus pattern (19 bp):
AAACAAAGATGCATTTAAA
Found at i:15826911 original size:21 final size:21
Alignment explanation
Indices: 15826830--15826916 Score: 61
Period size: 21 Copynumber: 4.1 Consensus size: 21
15826820 CAGTCTCGAG
* *
15826830 GTGGAGGTGAA-TAGCCTCATT
1 GTGGAGGTGAACGA-CCTCGTT
* * *
15826851 GTGGAGGTAAACGTCCTTGTT
1 GTGGAGGTGAACGACCTCGTT
*** *
15826872 GTGGTTCT-AAGCGAGCTCGTT
1 GTGGAGGTGAA-CGACCTCGTT
15826893 GTGGAGGTGAACGACCTCGTT
1 GTGGAGGTGAACGACCTCGTT
15826914 GTG
1 GTG
15826917 CTCTCCCCTC
Statistics
Matches: 48, Mismatches: 15, Indels: 6
0.70 0.22 0.09
Matches are distributed among these distances:
20 2 0.04
21 44 0.92
22 2 0.04
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.30
Consensus pattern (21 bp):
GTGGAGGTGAACGACCTCGTT
Found at i:15834924 original size:30 final size:32
Alignment explanation
Indices: 15834865--15834924 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
15834855 TGTGGAAGCT
*
15834865 TAATTTAAAACAAATGATTTACAAAAACGTGC
1 TAATTTAAAACAAATGAGTTACAAAAACGTGC
* *
15834897 TAATTT-AAA-AATTGAGTTACGAAAACGT
1 TAATTTAAAACAAATGAGTTACAAAAACGT
15834925 AGTGTTAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 16 0.64
31 3 0.12
32 6 0.24
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (32 bp):
TAATTTAAAACAAATGAGTTACAAAAACGTGC
Found at i:15845059 original size:29 final size:29
Alignment explanation
Indices: 15845012--15845341 Score: 385
Period size: 29 Copynumber: 11.4 Consensus size: 29
15845002 ATCGATTAAA
* ** *
15845012 GAAAAGGAATGGTTTCGACCATTGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
15845041 GAAAAGGGATGGTGACGACCATCAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * * * *
15845070 GAGAAGGGATAGTGACAACCATTGAATAA
1 GAAAAGGGATGGTGACGACCATCGAATAT
** *
15845099 GAAAAGGGATGGTTTCGACCATCAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
15845128 GGAAAGGGATGGTGATGACCATCGAATAA
1 GAAAAGGGATGGTGACGACCATCGAATAT
** *
15845157 GAAAAGGGATGGTTTCGACTATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
15845186 GCAAAGGGATGGTAACAACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
15845215 GAAAAGGGATGGTGACGACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
15845244 --AAAGGGATGGTGACGACCATCAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
15845271 GAAAAGGAAAGGTGATGACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* *
15845300 GAAAAGGGATGGTGACAACCATCGAATAC
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
15845329 GTAAAGGGATGGT
1 GAAAAGGGATGGT
15845342 TTCGACCTTT
Statistics
Matches: 249, Mismatches: 50, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
27 26 0.10
29 223 0.90
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.20
Consensus pattern (29 bp):
GAAAAGGGATGGTGACGACCATCGAATAT
Found at i:15846765 original size:42 final size:40
Alignment explanation
Indices: 15846713--15846794 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 40
15846703 ATTTTTTATT
*
15846713 TTATTTTTTAGTAATTTATTAGAATAAGGGAATTATTTTCCC
1 TTATCTTTTAGTAATTTATTAGAATAA--GAATTATTTTCCC
*
15846755 TTATCTTTTAGTAGTTTATTAGAATAAGAATTATTTTCCC
1 TTATCTTTTAGTAATTTATTAGAATAAGAATTATTTTCCC
15846795 AATTAGGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 13 0.34
42 25 0.66
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (40 bp):
TTATCTTTTAGTAATTTATTAGAATAAGAATTATTTTCCC
Found at i:15865833 original size:18 final size:19
Alignment explanation
Indices: 15865812--15865850 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15865802 TACTAAGAAA
15865812 CTAT-GATATAGCAAA-AAT
1 CTATAGATAT-GCAAACAAT
15865830 CTATAGATATGCAAACAAT
1 CTATAGATATGCAAACAAT
15865849 CT
1 CT
15865851 TGGGTAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (19 bp):
CTATAGATATGCAAACAAT
Found at i:15866765 original size:26 final size:26
Alignment explanation
Indices: 15866731--15866796 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
15866721 AAACTCTTTT
15866731 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
* *
15866757 AAAAGAAAACTCAAGATAAGTTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
15866783 AAAAGAAAACTCAA
1 AAAAGAAAACTCAA
15866797 AGATCATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.59, C:0.12, G:0.11, T:0.18
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAATTCTTA
Found at i:15866991 original size:10 final size:10
Alignment explanation
Indices: 15866978--15867003 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
15866968 TAAATAACTT
15866978 AAAATTATTC
1 AAAATTATTC
15866988 AAAATTATTC
1 AAAATTATTC
15866998 AAAATT
1 AAAATT
15867004 TGAAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTATTC
Found at i:15868589 original size:2 final size:2
Alignment explanation
Indices: 15868577--15868618 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
15868567 ATAACAACTT
*
15868577 GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
15868619 AGTTTTAGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:15875637 original size:28 final size:28
Alignment explanation
Indices: 15875606--15875665 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
15875596 CATGTAGTAG
* *
15875606 CAGTCTGGGCCTGAGCACTATACAGCAA
1 CAGTCTAGGCCTGAGCACAATACAGCAA
* * * *
15875634 CAGTGTAGGCCTTAGCCCAATACAGTAA
1 CAGTCTAGGCCTGAGCACAATACAGCAA
15875662 CAGT
1 CAGT
15875666 ACAATGCAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (28 bp):
CAGTCTAGGCCTGAGCACAATACAGCAA
Found at i:15875845 original size:26 final size:26
Alignment explanation
Indices: 15875771--15875847 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
15875761 ACACCAATAT
* * * *
15875771 CGCAACAAAGCTGCCAGTAATAATGA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* *
15875797 TGCAGCAAAACTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
15875823 CGCAGCAAAGCTGCCAATAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
15875848 TATGTGGCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:15876085 original size:27 final size:27
Alignment explanation
Indices: 15876023--15876111 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
15876013 AGGGTATAAT
* *
15876023 AGTCATTTTACCCTAT-GGGGGTATTTA
1 AGTCATTTTACCC-ATCGAGGGTATTTC
**
15876050 AGTTTTTTTACCCATCGAGGGTATTTC
1 AGTCATTTTACCCATCGAGGGTATTTC
* * * *
15876077 GGTCATTTTATCCATCCAAGGTATTTC
1 AGTCATTTTACCCATCGAGGGTATTTC
15876104 TA-TCATTT
1 -AGTCATTT
15876112 GCCCACAAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (27 bp):
AGTCATTTTACCCATCGAGGGTATTTC
Found at i:15880716 original size:22 final size:23
Alignment explanation
Indices: 15880676--15880724 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
15880666 ATAGGGGCAC
* *
15880676 GTAATATCCCGAAAATTACTACT
1 GTAATACCCCGAAAATTACTACA
15880699 GTAATACCCCG-AAATTACTACA
1 GTAATACCCCGAAAATTACTACA
15880721 GTAA
1 GTAA
15880725 GAAAGTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (23 bp):
GTAATACCCCGAAAATTACTACA
Found at i:15883887 original size:18 final size:18
Alignment explanation
Indices: 15883811--15883879 Score: 102
Period size: 18 Copynumber: 3.8 Consensus size: 18
15883801 AGCTCTCAGG
15883811 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
15883829 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
* ***
15883847 CAGTAAGCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
15883865 CATTCTTCTCCCTTC
1 CATTCTTCTCCCTTC
15883880 CTTCATTCCT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.13, C:0.43, G:0.03, T:0.41
Consensus pattern (18 bp):
CATTCTTCTCCCTTCATC
Found at i:15884609 original size:12 final size:12
Alignment explanation
Indices: 15884594--15884621 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15884584 GCCGTTTGTG
15884594 TGTTCGATATAA
1 TGTTCGATATAA
15884606 TGTTCGATATAA
1 TGTTCGATATAA
15884618 TGTT
1 TGTT
15884622 TTCTGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (12 bp):
TGTTCGATATAA
Found at i:15887362 original size:50 final size:50
Alignment explanation
Indices: 15887261--15887748 Score: 609
Period size: 50 Copynumber: 9.5 Consensus size: 50
15887251 TGTGAGCCAG
* *
15887261 TGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATGAGAGGTCCCA
* *
15887317 TGTAAGACCATGTCTAGGACATGGTGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
15887367 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
*
15887417 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGGTGAGAGGTTCCATGTTCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG-T-C-----CCA
* **
15887474 TGTAAGACCATGTCTGGGACATGTCGTTGGCACCGAGATGAGAGGTTTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
15887524 TGTAAGACCATGTCTAGGACATGGTGTTGGCACTGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* *
15887574 TGTAAGACCATGTCTGCGACATGGCGTTGGCACCGAGATGAGAGGTCTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
15887624 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGGGATCAGAGGTCCC-
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * * ** *
15887673 TCGTAAGACCGTGTCTGGGACATGGCATGGGCACCGATATGAGAACTCACA
1 T-GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
15887724 TGTAAGACCATATCTAGGATATGGC
1 TGTAAGACCATGTCTGGGACATGGC
15887749 ATTAGCAGTA
Statistics
Matches: 384, Mismatches: 39, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.00
50 300 0.78
51 2 0.01
52 1 0.00
53 3 0.01
55 1 0.00
56 30 0.08
57 46 0.12
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
Found at i:15887482 original size:57 final size:51
Alignment explanation
Indices: 15887261--15887804 Score: 583
Period size: 50 Copynumber: 10.6 Consensus size: 51
15887251 TGTGAGCCAG
* *
15887261 TGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTC-CCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATGAGAGGTCTCCA
* *
15887317 TGTAAGACCATGTCTAGGACATGGTGTTGGCACCGAGATGAGAGGTC-CCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
15887367 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC-CCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
*
15887417 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGGTGAGAGGTTCCATGTTCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG-T-C----TCCA
* *
15887474 TGTAAGACCATGTCTGGGACATGTCGTTGGCACCGAGATGAGAGGT-TTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
* * *
15887524 TGTAAGACCATGTCTAGGACATGGTGTTGGCACTGAGATGAGAGGTC-CCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
*
15887574 TGTAAGACCATGTCTGCGACATGGCGTTGGCACCGAGATGAGAGGTCT-CA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
* * *
15887624 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGGGATCAGAGGTC-CC-
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
* * * * *
15887673 TCGTAAGACCGTGTCTGGGACATGGCATGGGCACCGATATGAGA--ACTCACA
1 T-GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTC-CA
* * * * * * * * **
15887724 TGTAAGACCATATCTAGGATATGGCATTAGCA--GTACAGGAAACATCT-CA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATGAGAGGTCTCCA
* *
15887773 TGTAAGACCATGTCTCGGACATGGCTTTGGCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA
15887805 TGTTATTATC
Statistics
Matches: 427, Mismatches: 44, Indels: 41
0.83 0.09 0.08
Matches are distributed among these distances:
48 2 0.00
49 36 0.08
50 304 0.71
51 4 0.01
52 1 0.00
53 3 0.01
55 1 0.00
56 30 0.07
57 46 0.11
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.23
Consensus pattern (51 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCA
Found at i:15887504 original size:157 final size:151
Alignment explanation
Indices: 15887261--15887748 Score: 606
Period size: 157 Copynumber: 3.2 Consensus size: 151
15887251 TGTGAGCCAG
* *
15887261 TGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTC-CCATGTAAGAC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATGAGAGGTCTCCATGTAAGAC
*
15887325 CATGTCTAGGACATGGT-GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACAT
60 CATGTCTGGGACAT-GTCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACAT
15887389 GGCGTTGGCACCGAGATGAGAGGTCCCA
124 GGCGTTGGCACCGAGATGAGAGGTCCCA
*
15887417 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGGTGAGAGGTTCCATGTTCCATGTAAGAC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG-T-C----TCCATGTAAGAC
** *
15887482 CATGTCTGGGACATGTCGTTGGCACCGAGATGAGAGGTTTCATGTAAGACCATGTCTAGGACATG
60 CATGTCTGGGACATGTCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATG
* *
15887547 GTGTTGGCACTGAGATGAGAGGTCCCA
125 GCGTTGGCACCGAGATGAGAGGTCCCA
*
15887574 TGTAAGACCATGTCTGCGACATGGCGTTGGCACCGAGATGAGAGGTCT-CATGTAAGACCATGTC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCATGTAAGACCATGTC
* * * * * * *
15887638 TGGGACATGGCATTGGCACCGGGATCAGAGGTCCC-TCGTAAGACCGTGTCTGGGACATGGCATG
66 TGGGACATGTCGTTGGCACCGAGATGAGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCGTT
* ** *
15887702 GGCACCGATATGAGAACTCACA
130 GGCACCGAGATGAGAGGTCCCA
* * *
15887724 TGTAAGACCATATCTAGGATATGGC
1 TGTAAGACCATGTCTGGGACATGGC
15887749 ATTAGCAGTA
Statistics
Matches: 292, Mismatches: 31, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
149 1 0.00
150 112 0.38
151 2 0.01
152 1 0.00
153 3 0.01
155 2 0.01
156 34 0.12
157 137 0.47
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (151 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCATGTAAGACCATGTC
TGGGACATGTCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTG
GCACCGAGATGAGAGGTCCCA
Found at i:15887567 original size:207 final size:210
Alignment explanation
Indices: 15887261--15887747 Score: 678
Period size: 207 Copynumber: 2.4 Consensus size: 210
15887251 TGTGAGCCAG
*
15887261 TGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTAAGACC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAG--TATGAGAGGTCCCATGTAAGACC
*
15887326 ATGTCTAGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGG
63 ATGTCTAGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGCGACATGG
*
15887391 CGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGGT
128 CGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGT
15887456 GAGAGGTTCCATGTTCCA
193 GAGAGGTTCCATGTTCCA
* * **
15887474 TGTAAGACCATGTCTGGGACATGTCGTTGGCA-C-CGAG-ATGAGAGGTTTCATGTAAGACCATG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCATGTAAGACCATG
*
15887536 TCTAGGACATGGTGTTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCTGCGACATGGCGT
66 TCTAGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGCGACATGGCGT
* *
15887601 TGGCACCGAGATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-GGATCA
131 TGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGG-TGA
*
15887665 GAGG-TCC---CT-C-
195 GAGGTTCCATGTTCCA
* * ** * *
15887675 -GTAAGACCGTGTCTGGGACATGGCATGGGCA-C-CGA-TATGAGAACTCACATGTAAGACCATA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCATGTAAGACCATG
*
15887736 TCTAGGATATGG
66 TCTAGGACATGG
15887748 CATTAGCAGT
Statistics
Matches: 251, Mismatches: 21, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
200 62 0.25
202 1 0.00
203 1 0.00
206 5 0.02
207 148 0.59
210 3 0.01
212 1 0.00
213 30 0.12
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (210 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCATGTAAGACCATG
TCTAGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGCGACATGGCGT
TGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGTGAG
AGGTTCCATGTTCCA
Found at i:15894002 original size:28 final size:28
Alignment explanation
Indices: 15893971--15894058 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
15893961 CATGCAGTAG
* * *
15893971 CAGTCTGGGCCTGAGCCCTATATAGCAA
1 CAGTGTGGGCCTGAGCCCAATACAGCAA
* *
15893999 CAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTGTGGGCCTGAGCCCAATACAGCAA
* * *
15894027 CAGTGTGGGCCTTAACCCAATACAGTAA
1 CAGTGTGGGCCTGAGCCCAATACAGCAA
15894055 CAGT
1 CAGT
15894059 ACAATGCAGT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (28 bp):
CAGTGTGGGCCTGAGCCCAATACAGCAA
Found at i:15894218 original size:26 final size:27
Alignment explanation
Indices: 15894189--15894258 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 27
15894179 AATAATAATG
*
15894189 ACGCGGCAAAGCTACCAGTAACAGTA-
1 ACGCGGCAAAGCCACCAGTAACAGTAT
* * *
15894215 ACGCAGCAAAGCCGCTAGTAACAGTAT
1 ACGCGGCAAAGCCACCAGTAACAGTAT
* *
15894242 ATGTGGCAAAGCCACCA
1 ACGCGGCAAAGCCACCA
15894259 ATACAATATA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.37, C:0.27, G:0.23, T:0.13
Consensus pattern (27 bp):
ACGCGGCAAAGCCACCAGTAACAGTAT
Found at i:15894447 original size:27 final size:27
Alignment explanation
Indices: 15894417--15894504 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
15894407 AGTTGTAATA
**
15894417 GTCATTTTACCCTAT-GGGGGTATTTCG
1 GTCATTTTACCC-ATCCAGGGTATTTCG
15894444 GTCATTTTACCCATCCAGGGTATTTCG
1 GTCATTTTACCCATCCAGGGTATTTCG
* *
15894471 GTCATTTTAACCATCCAGGGTATTTCA
1 GTCATTTTACCCATCCAGGGTATTTCG
15894498 GTCATTT
1 GTCATTT
15894505 GCCCACAAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
26 2 0.04
27 54 0.96
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCATCCAGGGTATTTCG
Found at i:15900811 original size:5 final size:6
Alignment explanation
Indices: 15900775--15900808 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
15900765 CTGGTTGTGG
*
15900775 GGGAAA GAGAAA GGGAAA GGG-AA GGGAAA GGGAA
1 GGGAAA GGGAAA GGGAAA GGGAAA GGGAAA GGGAA
15900809 GGGCGAGGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
GGGAAA
Found at i:15900817 original size:11 final size:11
Alignment explanation
Indices: 15900775--15900811 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
15900765 CTGGTTGTGG
*
15900775 GGGAAAGAGAAA
1 GGGAAAG-GGAA
15900787 GGGAAAGGGAA
1 GGGAAAGGGAA
15900798 GGGAAAGGGAA
1 GGGAAAGGGAA
15900809 GGG
1 GGG
15900812 CGAGGGGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 17 0.71
12 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (11 bp):
GGGAAAGGGAA
Found at i:15907257 original size:30 final size:30
Alignment explanation
Indices: 15907221--15907279 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
15907211 CATGAGCTGG
*
15907221 CACACGGGCGAGTGGCCAGCCCATGTGGAT
1 CACACGGGCGAGAGGCCAGCCCATGTGGAT
** *
15907251 CACACGGGCTTGAGGCCAGCCCGTGTGGA
1 CACACGGGCGAGAGGCCAGCCCATGTGGA
15907280 AATTCCCAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.19, C:0.31, G:0.37, T:0.14
Consensus pattern (30 bp):
CACACGGGCGAGAGGCCAGCCCATGTGGAT
Found at i:15907293 original size:19 final size:19
Alignment explanation
Indices: 15907266--15907302 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15907256 GGGCTTGAGG
15907266 CCAGCCCGTGTGGAAATTC
1 CCAGCCCGTGTGGAAATTC
*
15907285 CCAGGCCGTGTGGAAATT
1 CCAGCCCGTGTGGAAATT
15907303 GGAGACAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (19 bp):
CCAGCCCGTGTGGAAATTC
Found at i:15916241 original size:32 final size:32
Alignment explanation
Indices: 15916200--15916266 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
15916190 GAACCATTAG
15916200 TATAATATCGGATACTTAGGAATCTCACACAC
1 TATAATATCGGATACTTAGGAATCTCACACAC
* *
15916232 TATAATATCGGATACTTGGGAGTCTCACACAC
1 TATAATATCGGATACTTAGGAATCTCACACAC
15916264 TAT
1 TAT
15916267 GTGCTAACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (32 bp):
TATAATATCGGATACTTAGGAATCTCACACAC
Found at i:15917337 original size:18 final size:18
Alignment explanation
Indices: 15917306--15917345 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15917296 ATAGCCATAT
*
15917306 TTTATTTTATTAATTTATC
1 TTTATTTTACTAATTTA-C
15917325 TTTA-TTTACTAATTTAC
1 TTTATTTTACTAATTTAC
15917342 TTTA
1 TTTA
15917346 ATAACCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATTTTACTAATTTAC
Found at i:15921444 original size:15 final size:15
Alignment explanation
Indices: 15921404--15921444 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15921394 ATCTATATAA
*
15921404 TCAAATTTAACTCAT
1 TCAAATTTAATTCAT
15921419 TCAAATTTAATTCTAT
1 TCAAATTTAATTC-AT
15921435 TC-AATTTAAT
1 TCAAATTTAAT
15921445 CCAAAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (15 bp):
TCAAATTTAATTCAT
Found at i:15928134 original size:21 final size:22
Alignment explanation
Indices: 15928110--15928157 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
15928100 GTTCAGGATC
15928110 GCACTCTGGTGCCTCTA-AATT
1 GCACTCTGGTGCCTCTATAATT
* *
15928131 GCACTTTGGTGCCTCTATATTT
1 GCACTCTGGTGCCTCTATAATT
15928153 GCACT
1 GCACT
15928158 ACAGTTCCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.38
Consensus pattern (22 bp):
GCACTCTGGTGCCTCTATAATT
Found at i:15930122 original size:14 final size:13
Alignment explanation
Indices: 15930091--15930127 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
15930081 AATCCATAGG
15930091 ATATTTT-TTTTC
1 ATATTTTCTTTTC
15930103 ATATTTTCTTTTC
1 ATATTTTCTTTTC
*
15930116 ATAATTTCTTTT
1 ATATTTTCTTTT
15930128 TTTCTGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (13 bp):
ATATTTTCTTTTC
Found at i:15934241 original size:50 final size:50
Alignment explanation
Indices: 15934150--15934275 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 50
15934140 GAAATCCCAT
* * * * ** *
15934150 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGGGGTGAGAGGTCCTCC
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCTAC
* * *
15934200 GTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCTAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCTAC
* *
15934250 GTAAGACCATATCTGGGATATGGCAT
1 GTAAGACCATGTCTGGGACATGGCAT
15934276 TGTCAGTACA
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 63 1.00
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.22
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCTAC
Found at i:15941463 original size:50 final size:50
Alignment explanation
Indices: 15941360--15941601 Score: 207
Period size: 50 Copynumber: 4.7 Consensus size: 50
15941350 GGTAAAAAGA
* *
15941360 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGC-TTTG-A-CACTGAG---ATGAGAGG
* *
15941416 TCCCATGTAAGACCATGTCTGGGGCATGGCTTTGACACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGACACTGAGATGAGAGG
** * * * * **
15941466 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGACACTGAGATGAGAGG
* * * * * * * * * **
15941516 TCCCATGTAAGACCATATATGGGATATGGCATTGGCAGT-ACAAGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGACACTGAGATGAGAGG
*
15941565 TCCCATGTAAGACCTTGTCTGGGACATGGCTTTGACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGACA
15941602 TGGCTCAACG
Statistics
Matches: 154, Mismatches: 32, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
49 36 0.23
50 80 0.52
53 5 0.03
54 1 0.01
55 3 0.02
56 29 0.19
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCTTTGACACTGAGATGAGAGG
Found at i:15946737 original size:28 final size:28
Alignment explanation
Indices: 15946694--15947597 Score: 1733
Period size: 28 Copynumber: 32.3 Consensus size: 28
15946684 CCCTATACAG
*
15946694 TAACAGT-ACAGTGTGGGCCTTA-CCCTA
1 TAACAGTAATAGTGTGGGCCTTAGCCC-A
* * *
15946721 AAAGAGTAATAATGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946749 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946777 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946805 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946833 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946861 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946889 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946917 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946945 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15946973 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947001 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947029 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947057 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947085 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947113 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947141 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947169 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947197 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947225 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947253 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947281 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947309 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947337 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947365 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947393 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947421 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947449 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947477 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947505 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947533 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947561 TAACAGTAATAGTGTGGGCCTTAGCCCA
1 TAACAGTAATAGTGTGGGCCTTAGCCCA
15947589 -ATACAGTAA
1 TA-ACAGTAA
15947598 CCAGTACAGT
Statistics
Matches: 867, Mismatches: 7, Indels: 5
0.99 0.01 0.01
Matches are distributed among these distances:
27 6 0.01
28 858 0.99
29 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (28 bp):
TAACAGTAATAGTGTGGGCCTTAGCCCA
Found at i:15954807 original size:24 final size:23
Alignment explanation
Indices: 15954780--15954852 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 23
15954770 AGTGTGTGAG
15954780 AAAAGAAAAGAAAGATGAAAAAGA
1 AAAAGAAAAGAAAGA-GAAAAAGA
* *
15954804 AAAAGAAATTGAAAGAAAAAAAGA
1 AAAAGAAA-AGAAAGAGAAAAAGA
*
15954828 AAGTGAGAAAA-AAAGAGAAAAAGA
1 AA--AAGAAAAGAAAGAGAAAAAGA
15954852 A
1 A
15954853 TTTCTAAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
24 30 0.73
25 6 0.15
26 5 0.12
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (23 bp):
AAAAGAAAAGAAAGAGAAAAAGA
Found at i:15954846 original size:18 final size:18
Alignment explanation
Indices: 15954775--15954847 Score: 71
Period size: 18 Copynumber: 4.0 Consensus size: 18
15954765 AAAAGAGTGT
15954775 GTGAGAAAAG-AAAAGAAA
1 GTGA-AAAAGAAAAAGAAA
15954793 GATGAAAAAGAAAAAGAAA
1 G-TGAAAAAGAAAAAGAAA
*
15954812 TTGAAAGAA-AAAAAGAAA
1 GTGAAA-AAGAAAAAGAAA
*
15954830 GTGAGAAAA-AAAGAGAAA
1 GTGA-AAAAGAAAAAGAAA
15954848 AAGAATTTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 33 0.69
19 15 0.31
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (18 bp):
GTGAAAAAGAAAAAGAAA
Found at i:15956605 original size:26 final size:26
Alignment explanation
Indices: 15956569--15956619 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15956559 GGATAAAAAG
15956569 GGGTCGCTAAGTGCAGATTCCCCGAT
1 GGGTCGCTAAGTGCAGATTCCCCGAT
* *
15956595 GGGTTGCTAAGTGCTGATTCCCCGA
1 GGGTCGCTAAGTGCAGATTCCCCGA
15956620 ATTATTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (26 bp):
GGGTCGCTAAGTGCAGATTCCCCGAT
Found at i:15956643 original size:42 final size:42
Alignment explanation
Indices: 15956596--15956818 Score: 188
Period size: 43 Copynumber: 5.3 Consensus size: 42
15956586 TTCCCCGATG
* *
15956596 GGTTGCTAAGTGCTGATTCCCCGAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
15956638 GGTTGCTAAGTGCTGATTCCACCGTA-TATTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATTA-TTGATTGT-AAAGGT
* * * * * * *
15956681 GGTTTCTATGTGCTGATTCCCCGTATCACTAAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
15956723 GGTTGCTAAGTGTTGATTCCACCGTATCT-TTGATTGTGAAA-GC
1 GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT-AAAGGT
** * * * *
15956766 GGTTGCTGTGTGTTGATTCCCCATATCACTGAATT-T-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTG-ATTGTAAAGGT
15956807 GGTTGCTAAGTG
1 GGTTGCTAAGTG
15956819 TTGAATCCAC
Statistics
Matches: 144, Mismatches: 26, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
40 2 0.01
41 16 0.11
42 56 0.39
43 62 0.43
44 8 0.06
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.36
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
Found at i:15956740 original size:85 final size:84
Alignment explanation
Indices: 15956595--15956829 Score: 317
Period size: 85 Copynumber: 2.8 Consensus size: 84
15956585 ATTCCCCGAT
* * * * * *
15956595 GGGTTGCTAAGTGCTGATTCCCCGAATTATTGATTCTAAAGGTGGTTGCTAAGTGCTGATTCCAC
1 GGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGTTGATTCCAC
15956660 CGTATATTTGATTGTGAAAG
65 CGTATATTTGATTGTGAAAG
* *
15956680 GGGTTTCTATGTGCTGATTCCCCGTATCACTAAATATAAAGGTGGTTGCTAAGTGTTGATTCCAC
1 GGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGTTGATTCCAC
*
15956745 CGTATCTTTGATTGTGAAAG
65 CGTATATTTGATTGTGAAAG
* * * * * *
15956765 CGGTTGCTGTGTGTTGATTCCCCATATCACTGAATTTAAGGTGGTTGCTAAGTGTTGAATCCACC
1 GGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGTTGATTCCACC
15956830 AAGTAACAGA
Statistics
Matches: 132, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
84 28 0.21
85 104 0.79
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.36
Consensus pattern (84 bp):
GGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGTTGATTCCACC
GTATATTTGATTGTGAAAG
Found at i:15959635 original size:21 final size:21
Alignment explanation
Indices: 15959606--15959646 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15959596 TGAAACAACG
* *
15959606 AGTTGAATCGGTCTAAAAACC
1 AGTTAAATCGATCTAAAAACC
15959627 AGTTAAATCGATCTAAAAAC
1 AGTTAAATCGATCTAAAAAC
15959647 TGATTGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (21 bp):
AGTTAAATCGATCTAAAAACC
Found at i:15968268 original size:592 final size:592
Alignment explanation
Indices: 15967144--15968331 Score: 2268
Period size: 592 Copynumber: 2.0 Consensus size: 592
15967134 TATATATATA
15967144 TGCATGTGCGTGTATGTGTATGTGTATTGGAGGTTCATACATAAAAGAAACCAAATTCTTCGCAT
1 TGCATGTGCGTGTATGTGTATGTGTATTGGAGGTTCATACATAAAAGAAACCAAATTCTTCGCAT
15967209 GCTTTCCCAAGGTGTTCCAGGGATTTAGCCCGTTCATCATGATTCTCGGAAAACAACAAAGAGTA
66 GCTTTCCCAAGGTGTTCCAGGGATTTAGCCCGTTCATCATGATTCTCGGAAAACAACAAAGAGTA
*
15967274 ATCAATTGTGGGGATTTCATCATAAAGATCAATGGCTAAAACATCAGAATTGATAGAATTCAAGA
131 ATCAATTGTGGGGATTTCATCACAAAGATCAATGGCTAAAACATCAGAATTGATAGAATTCAAGA
* *
15967339 AAAAATCATGAATATGAGAAATAGCTTTGGTTTTCAAATCAATGCATTCTTGACCAAGCATACGG
196 AAAAATCATGAAGATGAGAAATAGCTTTGGTTTTCAAATCAAAGCATTCTTGACCAAGCATACGG
15967404 TTAGCCATACGTCAAGGAAGAGAAATTAAGCTAACAAATTAAAAGCACAAATAAATATATTGAAG
261 TTAGCCATACGTCAAGGAAGAGAAATTAAGCTAACAAATTAAAAGCACAAATAAATATATTGAAG
* *
15967469 AGCTTTCTAAAGATGGGGAAGGTTGGATTTGCATGCATGCTGAGACGTTTTTCTCCTTTTATAGA
326 AGCTTTCTAAAGATGGGGAAGGTTGGATTTCCATGCATGCTGAGACGTTTTGCTCCTTTTATAGA
15967534 TGAATTCTTGGATCCACTGTTGTTTATTTTAATGTTAAAGTCATAAAAAGAATACTAGTCTTCTC
391 TGAATTCTTGGATCCACTGTTGTTTATTTTAATGTTAAAGTCATAAAAAGAATACTAGTCTTCTC
*
15967599 TCTTAATCATTTTTAAAATTAATAATTTAATTTAACCATGACCTATTTTTCTTTTTCTTCTATAA
456 TCTTAATCATTTTGAAAATTAATAATTTAATTTAACCATGACCTATTTTTCTTTTTCTTCTATAA
15967664 ATTATATCCCACTTTCCTCTTGGTCAATACTATAAAACTTTCGCCCAGCTTTTATAGAACAATAA
521 ATTATATCCCACTTTCCTCTTGGTCAATACTATAAAACTTTCGCCCAGCTTTTATAGAACAATAA
15967729 AATTTAG
586 AATTTAG
*
15967736 TGCATGTGCGTGTATGTGTATGTGTATTGGAGGTTCATACATAAAAGAAACCAAATTCTTGGCAT
1 TGCATGTGCGTGTATGTGTATGTGTATTGGAGGTTCATACATAAAAGAAACCAAATTCTTCGCAT
15967801 GCTTTCCCAAGGTGTTCCAGGGATTTAGCCCGTTCATCATGATTCTCGGAAAACAACAAAGAGTA
66 GCTTTCCCAAGGTGTTCCAGGGATTTAGCCCGTTCATCATGATTCTCGGAAAACAACAAAGAGTA
* *
15967866 ATCAATTGTGGGGATTTCATCACAAAGATCAATGGCTGAAATATCAGAATTGATAGAATTCAAGA
131 ATCAATTGTGGGGATTTCATCACAAAGATCAATGGCTAAAACATCAGAATTGATAGAATTCAAGA
* *
15967931 AAAAATCTTGAAGATGAGAAATAGCTTTGTTTTTCAAATCAAAGCATTCTTGACCAAGCATACGG
196 AAAAATCATGAAGATGAGAAATAGCTTTGGTTTTCAAATCAAAGCATTCTTGACCAAGCATACGG
*
15967996 TTAGCCATACGTCAAGGAAGAGAAATTAAGCTAACAAATTAAAAGCACAAATATATATATTGAAG
261 TTAGCCATACGTCAAGGAAGAGAAATTAAGCTAACAAATTAAAAGCACAAATAAATATATTGAAG
15968061 AGCTTTCTAAAGATGGGGAAGGTTGGATTTCCATGCATGCTGAGACGTTTTGCTCCTTTTATAGA
326 AGCTTTCTAAAGATGGGGAAGGTTGGATTTCCATGCATGCTGAGACGTTTTGCTCCTTTTATAGA
15968126 TGAATTCTTGGATCCACTGTTGTTTATTTTAATGTTAAAGTCATAAAAAGAATACTAGTCTTCTC
391 TGAATTCTTGGATCCACTGTTGTTTATTTTAATGTTAAAGTCATAAAAAGAATACTAGTCTTCTC
15968191 TCTTAATCATTTTGAAAATTAATAATTTAATTTAACCATGACCTATTTTTCTTTTTCTTCTATAA
456 TCTTAATCATTTTGAAAATTAATAATTTAATTTAACCATGACCTATTTTTCTTTTTCTTCTATAA
15968256 ATTATATCCCACTTTCCTCTTGGTCAATACTATAAAACTTTCGCCCAGCTTTTATAGAACAATAA
521 ATTATATCCCACTTTCCTCTTGGTCAATACTATAAAACTTTCGCCCAGCTTTTATAGAACAATAA
15968321 AATTTAG
586 AATTTAG
15968328 TGCA
1 TGCA
15968332 ACCACCTATA
Statistics
Matches: 584, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
592 584 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (592 bp):
TGCATGTGCGTGTATGTGTATGTGTATTGGAGGTTCATACATAAAAGAAACCAAATTCTTCGCAT
GCTTTCCCAAGGTGTTCCAGGGATTTAGCCCGTTCATCATGATTCTCGGAAAACAACAAAGAGTA
ATCAATTGTGGGGATTTCATCACAAAGATCAATGGCTAAAACATCAGAATTGATAGAATTCAAGA
AAAAATCATGAAGATGAGAAATAGCTTTGGTTTTCAAATCAAAGCATTCTTGACCAAGCATACGG
TTAGCCATACGTCAAGGAAGAGAAATTAAGCTAACAAATTAAAAGCACAAATAAATATATTGAAG
AGCTTTCTAAAGATGGGGAAGGTTGGATTTCCATGCATGCTGAGACGTTTTGCTCCTTTTATAGA
TGAATTCTTGGATCCACTGTTGTTTATTTTAATGTTAAAGTCATAAAAAGAATACTAGTCTTCTC
TCTTAATCATTTTGAAAATTAATAATTTAATTTAACCATGACCTATTTTTCTTTTTCTTCTATAA
ATTATATCCCACTTTCCTCTTGGTCAATACTATAAAACTTTCGCCCAGCTTTTATAGAACAATAA
AATTTAG
Found at i:15969087 original size:27 final size:26
Alignment explanation
Indices: 15969056--15969110 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15969046 TAACTAAAAT
15969056 TAAATTAAATTAGAGAAATATATTAAA
1 TAAATTAAATTAGAG-AATATATTAAA
** *
15969083 TAAATTGGATTTGAGAATATATTAAA
1 TAAATTAAATTAGAGAATATATTAAA
15969109 TA
1 TA
15969111 TTAATGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (26 bp):
TAAATTAAATTAGAGAATATATTAAA
Found at i:15983124 original size:25 final size:25
Alignment explanation
Indices: 15983064--15983124 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
15983054 CTCCTCAATT
*
15983064 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
* *
15983089 TTTATTGAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
15983114 TTAATTAAATT
1 TTAATTAAATT
15983125 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:15983685 original size:76 final size:76
Alignment explanation
Indices: 15983553--15983706 Score: 263
Period size: 76 Copynumber: 2.0 Consensus size: 76
15983543 CTTGTTGAGA
* * * *
15983553 AATATAGAGTCTAAAAATTTGTAAGAAATTCTCGAGGAACTTACAGTTCTAGGTTCTAAGTGGAC
1 AATATAGAGTCTAAAAATTTGCAAGAAATTCTCGAGGAACTCACAGTTCCAAGTTCTAAGTGGAC
15983618 TATGTCAAAGC
66 TATGTCAAAGC
*
15983629 AATATAGAGTCTGAAAATTTGCAAGAAATTCTCGAGGAACTCACAGTTCCAAGTTCTAAGTGGAC
1 AATATAGAGTCTAAAAATTTGCAAGAAATTCTCGAGGAACTCACAGTTCCAAGTTCTAAGTGGAC
15983694 TATGTCAAAGC
66 TATGTCAAAGC
15983705 AA
1 AA
15983707 GAAATCAACA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (76 bp):
AATATAGAGTCTAAAAATTTGCAAGAAATTCTCGAGGAACTCACAGTTCCAAGTTCTAAGTGGAC
TATGTCAAAGC
Found at i:15985863 original size:43 final size:43
Alignment explanation
Indices: 15985797--15985889 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
15985787 CAATGCCGCT
* *
15985797 AAACGCCGCTAATGATCAAGACCTTTAGC-AGCGCTTCTACCAC
1 AAACGCCGCTAAAGATCAAGACCTTTAGCGA-CGCTTCTACAAC
*
15985840 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTCTACAAC
1 AAACGCCGCTAAAGATCAAGACCTTTAGCGACGCTTCTACAAC
*
15985883 GAACGCC
1 AAACGCC
15985890 ACAATAAAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCAAGACCTTTAGCGACGCTTCTACAAC
Found at i:15990054 original size:21 final size:21
Alignment explanation
Indices: 15989998--15990059 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 21
15989988 CACATACACC
15989998 AATGCATACAAAATAAAAACTT
1 AATGC-TACAAAATAAAAACTT
* *
15990020 AACGCTAC---A-GAAAACTT
1 AATGCTACAAAATAAAAACTT
15990037 AATGCTACAAAATAAAAACTT
1 AATGCTACAAAATAAAAACTT
15990058 AA
1 AA
15990060 GCTTCCAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
17 14 0.44
18 1 0.03
20 1 0.03
21 12 0.38
22 4 0.12
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.21
Consensus pattern (21 bp):
AATGCTACAAAATAAAAACTT
Found at i:15995454 original size:15 final size:15
Alignment explanation
Indices: 15995436--15995469 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15995426 TAATAAATGA
15995436 AATATATATAT-AATT
1 AATATATAT-TGAATT
15995451 AATATATATTGAATT
1 AATATATATTGAATT
15995466 AATA
1 AATA
15995470 ATAATACAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
AATATATATTGAATT
Found at i:15996263 original size:7 final size:7
Alignment explanation
Indices: 15996253--15996364 Score: 59
Period size: 7 Copynumber: 15.7 Consensus size: 7
15996243 CCCCAACCTT
15996253 TAAACCA
1 TAAACCA
15996260 TAAACCA
1 TAAACCA
15996267 TAAACCA
1 TAAACCA
** *
15996274 TAGCCCC
1 TAAACCA
15996281 TAAACCCA
1 TAAA-CCA
*
15996289 TAATCCA
1 TAAACCA
*
15996296 TAAACCT
1 TAAACCA
15996303 TAAA--A
1 TAAACCA
*
15996308 TAGTAACTCC
1 TA--AAC-CA
*
15996318 TAAACCT
1 TAAACCA
15996325 TAAACTC-
1 TAAAC-CA
15996332 TAAACCA
1 TAAACCA
* *
15996339 TATACCC
1 TAAACCA
15996346 TAAACCA
1 TAAACCA
* *
15996353 AAAACCT
1 TAAACCA
15996360 TAAAC
1 TAAAC
15996365 TATGTGATAA
Statistics
Matches: 78, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
5 2 0.03
6 1 0.01
7 64 0.82
8 9 0.12
10 2 0.03
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:15997988 original size:33 final size:33
Alignment explanation
Indices: 15997946--15998148 Score: 163
Period size: 33 Copynumber: 5.6 Consensus size: 33
15997936 AAAATACGGT
15997946 GGAATCAGCACTTAGCAACCACCAATGAATCAG
1 GGAATCAGCACTTAGCAACCACCAATGAATCAG
* * *
15997979 GGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATAAGG
1 GGAATCAGCACTTAGCAACCAC---CA-A--TGA-ATCA-G
15998020 TGGAATCAGCACTTAGCAACCACCAATGAATCAG
1 -GGAATCAGCACTTAGCAACCACCAATGAATCAG
* * *
15998054 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACTAT
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T-GAAT-C-AG
* *
15998096 GGAATCAGCACTTAACAACCACCAATGAATCGG
1 GGAATCAGCACTTAGCAACCACCAATGAATCAG
*
15998129 GGAATCAACACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
15998149 CCTTTATATT
Statistics
Matches: 136, Mismatches: 16, Indels: 36
0.72 0.09 0.19
Matches are distributed among these distances:
33 57 0.42
34 5 0.04
35 6 0.04
36 7 0.05
37 2 0.01
38 2 0.01
39 7 0.05
40 6 0.04
41 5 0.04
42 39 0.29
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATCAG
Found at i:15998038 original size:42 final size:39
Alignment explanation
Indices: 15997903--15998115 Score: 155
Period size: 33 Copynumber: 5.5 Consensus size: 39
15997893 AGTGATTCGA
* *
15997903 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCC-TTCACATT--TAAATA-AGT
* * *
15997946 GGAATCAGCACTTAGCAACCAC--CA-A--TGAATCAG-
1 GGAATCAGCACTTAGCAACCCCTTCACATTTAAATAAGT
15997979 GGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATAAGGT
1 GGAATCAGCACTTAGCAACCCC-TTCACATTTAA-ATAA-GT
* * *
15998021 GGAATCAGCACTTAGCAACCAC--CA-A--TGAATCAG-
1 GGAATCAGCACTTAGCAACCCCTTCACATTTAAATAAGT
15998054 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACTA-T
1 GGAATCAGCACTTAGCAA-CCCCTTCACATTT-AAATA--AGT
*
15998096 GGAATCAGCACTTAACAACC
1 GGAATCAGCACTTAGCAACC
15998116 ACCAATGAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 40
0.71 0.08 0.21
Matches are distributed among these distances:
33 39 0.29
34 5 0.04
35 6 0.04
36 6 0.04
37 2 0.01
38 1 0.01
39 6 0.04
40 8 0.06
41 3 0.02
42 39 0.29
43 21 0.15
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (39 bp):
GGAATCAGCACTTAGCAACCCCTTCACATTTAAATAAGT
Found at i:15998048 original size:75 final size:75
Alignment explanation
Indices: 15997866--15998153 Score: 425
Period size: 75 Copynumber: 3.8 Consensus size: 75
15997856 TATCCGTTAT
* * * * *
15997866 CGGTGGATTCAACACTTAGCAACCACTAGTGATTC-GAGGAATCAGCACTTAGCAACCCCTTTCA
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAG-GGAATCAGCACTTAGCAACCCCTTTCA
*
15997930 CATTCAAAAATA
65 CATT-TAAAATA
15997942 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTTTCAC
*
15998007 ATTTAAGATA
66 ATTTAAAATA
* *
15998017 AGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCCTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTTTCAC
15998082 ATTTAAAATA
66 ATTTAAAATA
** * * *
15998092 CTATGGAATCAGCACTTAACAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTTT
15998154 ATATTCAATG
Statistics
Matches: 194, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
75 132 0.68
76 61 0.31
77 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (75 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTTAAAATA
Found at i:16005514 original size:75 final size:75
Alignment explanation
Indices: 16005425--16005596 Score: 202
Period size: 75 Copynumber: 2.3 Consensus size: 75
16005415 AAAATATGGT
* ** * ** **
16005425 GGAATCAGCACTTAGCAATCCTTTTCACATTTAAGATA-CAGTGGGCTCATCACTTAGCAACCAC
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATATCA-TGGAATCAGAACTTAGCAACCAC
* *
16005489 CAATGATTCGG
65 CAATGAATCAG
* * *
16005500 GGAATCATCACTTAGCAACCCCCTTCATATTTAAAATATTATGGAATCAGAACTTAGCAACCACC
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATATCATGGAATCAGAACTTAGCAACCACC
16005565 AATGAATCAG
66 AATGAATCAG
*
16005575 GGAATCAGCACTTAGTAACCCC
1 GGAATCAGCACTTAGCAACCCC
16005597 TTTATATTCA
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
75 80 0.99
76 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (75 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATATCATGGAATCAGAACTTAGCAACCACC
AATGAATCAG
Found at i:16006930 original size:41 final size:41
Alignment explanation
Indices: 16006883--16007012 Score: 158
Period size: 41 Copynumber: 3.2 Consensus size: 41
16006873 CCGTTAAATA
* *
16006883 GAGCATTAGCGACGTTTCTTCAAAATCGCCGCTAAAGCCCT
1 GAGCATTAGCGGCGTTTCTTCAAAAACGCCGCTAAAGCCCT
16006924 GAGCATTAGCGGCGCTTT-TTCAAAAACGCCGCTAAAGACCC-
1 GAGCATTAGCGGCG-TTTCTTCAAAAACGCCGCTAAAG-CCCT
* * * *
16006965 GAGCATTAGCGGTGCTTCTT-AGAAAACACCGCTAAAACCCT
1 GAGCATTAGCGGCGTTTCTTCA-AAAACGCCGCTAAAGCCCT
16007006 GAGCATT
1 GAGCATT
16007013 TGTGGCGCTT
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
40 6 0.08
41 66 0.85
42 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (41 bp):
GAGCATTAGCGGCGTTTCTTCAAAAACGCCGCTAAAGCCCT
Found at i:16007036 original size:41 final size:40
Alignment explanation
Indices: 16006911--16007040 Score: 147
Period size: 41 Copynumber: 3.2 Consensus size: 40
16006901 TTCAAAATCG
* *
16006911 CCGCTAAAGCCCTGAGCATTAGCGGCGCTTTT-TCAAAAACG
1 CCGCTAAAACCCTGAGCATTAGCGGCGCTTTTAT--AAAACA
* *
16006952 CCGCTAAAGACCC-GAGCATTAGCGGTGCTTCTTAGAAAACA
1 CCGCTAAA-ACCCTGAGCATTAGCGGCGCTT-TTATAAAACA
* *
16006993 CCGCTAAAACCCTGAGCATTTGTGGCGCTTTTATAAAAGCA
1 CCGCTAAAACCCTGAGCATTAGCGGCGCTTTTATAAAA-CA
16007034 CCGCTAA
1 CCGCTAA
16007041 TGATTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
40 11 0.14
41 60 0.79
42 5 0.07
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCGCTAAAACCCTGAGCATTAGCGGCGCTTTTATAAAACA
Found at i:16009853 original size:20 final size:20
Alignment explanation
Indices: 16009828--16009943 Score: 79
Period size: 20 Copynumber: 5.8 Consensus size: 20
16009818 ACTTCTCTAT
*
16009828 ATTACTTGTAGCTTGTCTGC
1 ATTACTGGTAGCTTGTCTGC
* * * * *
16009848 ATTACTAGTAGTTTATATAC
1 ATTACTGGTAGCTTGTCTGC
* *
16009868 ATTACTGGTACCTTGTCTAC
1 ATTACTGGTAGCTTGTCTGC
** * * **
16009888 GCTACTGGCAGTTTACCTGC
1 ATTACTGGTAGCTTGTCTGC
*
16009908 ATTACTGGCAGCTTGTCTGC
1 ATTACTGGTAGCTTGTCTGC
* *
16009928 ATTATTGGTTGCTTGT
1 ATTACTGGTAGCTTGT
16009944 TCACAAATTG
Statistics
Matches: 70, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTACTGGTAGCTTGTCTGC
Found at i:16009883 original size:40 final size:40
Alignment explanation
Indices: 16009828--16009931 Score: 109
Period size: 40 Copynumber: 2.6 Consensus size: 40
16009818 ACTTCTCTAT
* * *
16009828 ATTACTTGTAGCTTGTCTGCATTACTAGTAGTTTATATAC
1 ATTACTGGTAGCTTGTCTGCATTACTAGCAGTTTACATAC
* * ** * * *
16009868 ATTACTGGTACCTTGTCTACGCTACTGGCAGTTTACCTGC
1 ATTACTGGTAGCTTGTCTGCATTACTAGCAGTTTACATAC
*
16009908 ATTACTGGCAGCTTGTCTGCATTA
1 ATTACTGGTAGCTTGTCTGCATTA
16009932 TTGGTTGCTT
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (40 bp):
ATTACTGGTAGCTTGTCTGCATTACTAGCAGTTTACATAC
Found at i:16011701 original size:42 final size:42
Alignment explanation
Indices: 16011654--16011779 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
16011644 AGGAGCATAA
* *
16011654 TCACTTAAACTCGTATGGGGAGCTTCACTGATACACAGCTTG
1 TCACTTAAGCTCATATGGGGAGCTTCACTGATACACAGCTTG
* * * * *
16011696 TCACTTAAGCTCATATTGAGAGCTTTATTGATACACAGCTTT
1 TCACTTAAGCTCATATGGGGAGCTTCACTGATACACAGCTTG
* * *
16011738 TCACTTAAGCTCACATGGGGAGCTTCGCCGATACACAG-TTG
1 TCACTTAAGCTCATATGGGGAGCTTCACTGATACACAGCTTG
16011779 T
1 T
16011780 AAAACTGTTT
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
41 3 0.04
42 66 0.96
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (42 bp):
TCACTTAAGCTCATATGGGGAGCTTCACTGATACACAGCTTG
Found at i:16012866 original size:17 final size:16
Alignment explanation
Indices: 16012834--16012865 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16012824 AACTTTAGGG
16012834 GCAAAAATGTAATTTT
1 GCAAAAATGTAATTTT
*
16012850 GCAAAAATGTGATTTT
1 GCAAAAATGTAATTTT
16012866 TTGACTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (16 bp):
GCAAAAATGTAATTTT
Found at i:16015707 original size:27 final size:27
Alignment explanation
Indices: 16015677--16015734 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
16015667 CCTAGTTCGT
* *
16015677 CAAACATACTGGCGAACACTAGATCAC
1 CAAACAGACTGGCAAACACTAGATCAC
* * *
16015704 CAAACAGACTGGCAAACCCTAGCTCGC
1 CAAACAGACTGGCAAACACTAGATCAC
16015731 CAAA
1 CAAA
16015735 TGGACTGGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.33, G:0.16, T:0.12
Consensus pattern (27 bp):
CAAACAGACTGGCAAACACTAGATCAC
Found at i:16017595 original size:32 final size:32
Alignment explanation
Indices: 16017523--16017602 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 32
16017513 ATATATAGTA
* *
16017523 AAAAATTAAAATATATATTTTAGACATGATATT
1 AAAAATTAAAATAAATAATTTAGA-ATGATATT
16017556 AAAAATTAAAA-AAATAATTTAG-ATGATATTT
1 AAAAATTAAAATAAATAATTTAGAATGATA-TT
16017587 AAATAATTAAATATAA
1 AAA-AATTAAA-ATAA
16017603 TATAGCAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
30 6 0.15
31 5 0.12
32 16 0.39
33 12 0.29
34 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (32 bp):
AAAAATTAAAATAAATAATTTAGAATGATATT
Found at i:16017603 original size:30 final size:30
Alignment explanation
Indices: 16017523--16017603 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 30
16017513 ATATATAGTA
16017523 AAAAATTAAAATATATATTTTAGACATGATATT
1 AAAAATTAAAATATA-A-TTTAGA-ATGATATT
*
16017556 AAAAATTAAAAAAATAATTTAG-ATGATATTT
1 AAAAATT-AAAATATAATTTAGAATGATA-TT
16017587 AAATAATT-AAATATAAT
1 AAA-AATTAAAATATAAT
16017604 ATAGCAAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
30 14 0.33
31 5 0.12
32 9 0.21
33 8 0.19
34 7 0.16
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.37
Consensus pattern (30 bp):
AAAAATTAAAATATAATTTAGAATGATATT
Found at i:16018036 original size:11 final size:9
Alignment explanation
Indices: 16018012--16018080 Score: 50
Period size: 9 Copynumber: 7.2 Consensus size: 9
16018002 TTAAAAGTTC
16018012 AAAAATTAT
1 AAAAATTAT
16018021 AAAAATTATTT
1 AAAAATTA--T
**
16018032 AAAAAAAAT
1 AAAAATTAT
*
16018041 AAAAAATCATT
1 -AAAAATTA-T
*
16018052 AAAAAAGTAT
1 -AAAAATTAT
16018062 AAAAATTAT
1 AAAAATTAT
16018071 AAAAA-TAT
1 AAAAATTAT
16018079 AA
1 AA
16018081 TTTTTAAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
8 5 0.10
9 22 0.45
10 7 0.14
11 15 0.31
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:16018055 original size:19 final size:18
Alignment explanation
Indices: 16018033--16018080 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
16018023 AAATTATTTA
16018033 AAAAAAATAAAAAATCATT
1 AAAAAAATAAAAAATCA-T
* *
16018052 AAAAAAGTATAAAAATTAT
1 AAAAAAATA-AAAAATCAT
*
16018071 AAAAATATAA
1 AAAAAAATAA
16018081 TTTTTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 16 0.67
20 7 0.29
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAAATAAAAAATCAT
Found at i:16018075 original size:20 final size:20
Alignment explanation
Indices: 16018012--16018075 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
16018002 TTAAAAGTTC
*
16018012 AAAAATTATAAAAATTATTTAA
1 AAAAAATATAAAAATTA--TAA
* *
16018034 AAAAAATA-AAAAATCATTA
1 AAAAAATATAAAAATTATAA
*
16018053 AAAAAGTATAAAAATTATAA
1 AAAAAATATAAAAATTATAA
16018073 AAA
1 AAA
16018076 TATAATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 9 0.26
20 12 0.34
21 7 0.20
22 7 0.20
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAAATATAAAAATTATAA
Found at i:16019237 original size:19 final size:20
Alignment explanation
Indices: 16019197--16019237 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
16019187 TATATTTTTA
* *
16019197 TAATTTTTAAATAATGATTT
1 TAATTTTTAAAAAATGAGTT
16019217 TAATTTTTAAAAAAT-AGTT
1 TAATTTTTAAAAAATGAGTT
16019236 TA
1 TA
16019238 TATATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TAATTTTTAAAAAATGAGTT
Found at i:16021622 original size:20 final size:21
Alignment explanation
Indices: 16021584--16021622 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16021574 GCTTGATACC
16021584 AAATGATACGAACTCATTTTA
1 AAATGATACGAACTCATTTTA
*
16021605 AAATGATTCGAA-TCATTT
1 AAATGATACGAACTCATTT
16021623 AGATTGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (21 bp):
AAATGATACGAACTCATTTTA
Found at i:16022595 original size:19 final size:19
Alignment explanation
Indices: 16022568--16022606 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
16022558 TTATTCCAAC
16022568 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
16022587 AACTTAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
16022606 A
1 A
16022607 GTAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:16029156 original size:3 final size:3
Alignment explanation
Indices: 16029148--16029173 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
16029138 ATGCTTAAAA
16029148 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
16029174 AAAAGATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:16030068 original size:14 final size:14
Alignment explanation
Indices: 16030049--16030076 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
16030039 TAAAGTTATA
16030049 TTTAATAATTCATT
1 TTTAATAATTCATT
16030063 TTTAATAATTCATT
1 TTTAATAATTCATT
16030077 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:16078076 original size:25 final size:25
Alignment explanation
Indices: 16078048--16078099 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
16078038 CCAAGTTCAA
16078048 CCTCATGCATCCGTTTGAAGTACTC
1 CCTCATGCATCCGTTTGAAGTACTC
16078073 CCTCATGCATCCGTTTGAAGTACTC
1 CCTCATGCATCCGTTTGAAGTACTC
16078098 CC
1 CC
16078100 CAATGGCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (25 bp):
CCTCATGCATCCGTTTGAAGTACTC
Found at i:16078463 original size:16 final size:17
Alignment explanation
Indices: 16078442--16078474 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
16078432 TATCAACTTC
*
16078442 AATAAAGAAAA-CTAAA
1 AATAAAAAAAATCTAAA
16078458 AATAAAAAAAATCTAAA
1 AATAAAAAAAATCTAAA
16078475 TTATACTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (17 bp):
AATAAAAAAAATCTAAA
Found at i:16080018 original size:26 final size:27
Alignment explanation
Indices: 16079966--16080020 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
16079956 TAACTAAAAT
16079966 TAAATTGAATTAGAGAAATATATTAAA
1 TAAATTGAATTAGAGAAATATATTAAA
* *
16079993 TAAATTGGATTTGAG-AATATATTAAA
1 TAAATTGAATTAGAGAAATATATTAAA
16080019 TA
1 TA
16080021 TTAATGAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (27 bp):
TAAATTGAATTAGAGAAATATATTAAA
Found at i:16085222 original size:40 final size:40
Alignment explanation
Indices: 16085178--16085255 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
16085168 TGGCTTCTCC
* * *
16085178 ACATTACTT-ACAGCTTGTCTACATTACGGGCAGTTTATAT
1 ACATTA-TTGACAGCTTGTCTACACTACCGACAGTTTATAT
**
16085218 ACATTATTGTTAGCTTGTCTACACTACCGACAGTTTAT
1 ACATTATTGACAGCTTGTCTACACTACCGACAGTTTAT
16085256 CTGCATAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.06
40 30 0.94
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (40 bp):
ACATTATTGACAGCTTGTCTACACTACCGACAGTTTATAT
Found at i:16087068 original size:21 final size:21
Alignment explanation
Indices: 16087039--16087080 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
16087029 CAGAAGTAGA
16087039 ATCAAAGATTGGTTTATGCTT
1 ATCAAAGATTGGTTTATGCTT
*
16087060 ATCAGAGATTGGTTTATGCTT
1 ATCAAAGATTGGTTTATGCTT
16087081 CTAGGCATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (21 bp):
ATCAAAGATTGGTTTATGCTT
Found at i:16090100 original size:21 final size:21
Alignment explanation
Indices: 16090076--16090129 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 21
16090066 TATATATATG
16090076 TTATGTTTAAATATTAGGTGT
1 TTATGTTTAAATATTAGGTGT
16090097 TTATGTTTAGTAAATATTAGGTGT
1 TTATG-TT--TAAATATTAGGTGT
*
16090121 TTCTGTTTA
1 TTATGTTTA
16090130 GTTTAATATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 7 0.24
22 2 0.07
23 2 0.07
24 18 0.62
ACGTcount: A:0.26, C:0.02, G:0.19, T:0.54
Consensus pattern (21 bp):
TTATGTTTAAATATTAGGTGT
Found at i:16090115 original size:24 final size:24
Alignment explanation
Indices: 16090083--16090131 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
16090073 ATGTTATGTT
16090083 TAAATATTAGGTGTTTATGTTTAG
1 TAAATATTAGGTGTTTATGTTTAG
*
16090107 TAAATATTAGGTGTTTCTGTTTAG
1 TAAATATTAGGTGTTTATGTTTAG
16090131 T
1 T
16090132 TTAATATGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (24 bp):
TAAATATTAGGTGTTTATGTTTAG
Found at i:16092295 original size:54 final size:53
Alignment explanation
Indices: 16092250--16092477 Score: 287
Period size: 54 Copynumber: 4.2 Consensus size: 53
16092240 ACCCTCAAAT
* * *
16092250 GGTAAAATGAACGTAATACCACTATAGGGTAAAATCG-CCGTAATACCCGTGTAG
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAAT-GACCGTAATACCC-TATAG
* * *
16092304 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACTCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATAC-CCTATAG
* * *
16092358 GGTAAAATTACCGTAATACCCCTATAGGGTAAAATGACCATAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAAT-ACCCTATAG
* * *
16092412 GGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATACCC-TATAG
*
16092466 GGTAAGATGACC
1 GGTAAAATGACC
16092478 ATTTTGCCCT
Statistics
Matches: 154, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
53 4 0.03
54 147 0.95
55 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (53 bp):
GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATACCCTATAG
Found at i:16092359 original size:81 final size:79
Alignment explanation
Indices: 16092224--16092479 Score: 307
Period size: 81 Copynumber: 3.2 Consensus size: 79
16092214 CGGAAAGGTT
* * * * * *
16092224 GTAAAATTACCAAAATA-CCCTCAAATGGTAAAATGAACGTAATACCACTATAGGGTAAAATCGC
1 GTAAAATGACCATAATACCCCT-ATAGGGTAAAATGACCGTAATACC-CTGTAGGGTAAAAT-GC
*
16092288 CGTAATACCCGTGTAGG
63 CGTAATACCCCTGTAGG
* * * *
16092305 GTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACTCCTGTAGGGTAAAATTACC
1 GTAAAATGACCATAATACCCCTATAGGGTAAAATGACCGTAATAC-CCTGTAGGGTAAAA-TGCC
*
16092370 GTAATACCCCTATAGG
64 GTAATACCCCTGTAGG
*
16092386 GTAAAATGACCATAATGCCCCTATAGGGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACC
1 GTAAAATGACCATAATACCCCTATAGGGTAAAATGACCGTAATACCC-TGTAGGGTAAAATG-CC
*
16092451 GTAATACCCTTGTAGG
64 GTAATACCCCTGTAGG
*
16092467 GTAAGATGACCAT
1 GTAAAATGACCAT
16092480 TTTGCCCTAG
Statistics
Matches: 150, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 3 0.02
81 141 0.94
82 6 0.04
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (79 bp):
GTAAAATGACCATAATACCCCTATAGGGTAAAATGACCGTAATACCCTGTAGGGTAAAATGCCGT
AATACCCCTGTAGG
Found at i:16092486 original size:81 final size:80
Alignment explanation
Indices: 16092250--16092479 Score: 318
Period size: 81 Copynumber: 2.8 Consensus size: 80
16092240 ACCCTCAAAT
* * *
16092250 GGTAAAATGAACGTAATACCACTATAGGGTAAAATCG-CCGTAATACCCGTGTAGGGTAAAATGA
1 GGTAAAATGACCGTAATACC-CTGTAGGGTAAAAT-GACCGTAATACCCCTGTAGGGTAAAATGA
* * * *
16092314 TCGTAATACCCCTGTAG
64 CCATAATGCCCCTATAG
* *
16092331 GGTAAAATGACCGTAATACTCCTGTAGGGTAAAATTACCGTAATACCCCTATAGGGTAAAATGAC
1 GGTAAAATGACCGTAATAC-CCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGAC
16092396 CATAATGCCCCTATAG
65 CATAATGCCCCTATAG
* *
16092412 GGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACCGTAATACCCTTGTAGGGTAAGATGAC
1 GGTAAAATGACCGTAATACCC-TGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGAC
16092477 CAT
65 CAT
16092480 TTTGCCCTAG
Statistics
Matches: 133, Mismatches: 13, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
80 2 0.02
81 130 0.98
82 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (80 bp):
GGTAAAATGACCGTAATACCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACC
ATAATGCCCCTATAG
Found at i:16092487 original size:27 final size:27
Alignment explanation
Indices: 16092250--16092479 Score: 241
Period size: 27 Copynumber: 8.5 Consensus size: 27
16092240 ACCCTCAAAT
* * *
16092250 GGTAAAATGAACGTAATACCAC-TATAG
1 GGTAAAATGACCATAATACC-CTTGTAG
* *
16092277 GGTAAAATCG-CCGTAATACCCGTGTAG
1 GGTAAAAT-GACCATAATACCCTTGTAG
* * *
16092304 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCATAATACCCTTGTAG
*
16092331 GGTAAAATGACCGTAATACTCC-TGTAG
1 GGTAAAATGACCATAATAC-CCTTGTAG
* * * *
16092358 GGTAAAATTACCGTAATACCCCTATAG
1 GGTAAAATGACCATAATACCCTTGTAG
* * *
16092385 GGTAAAATGACCATAATGCCCCTATAG
1 GGTAAAATGACCATAATACCCTTGTAG
*
16092412 GGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGACCATAATACCCTTGTAG
*
16092439 GGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGACCATAATACCCTTGTAG
*
16092466 GGTAAGATGACCAT
1 GGTAAAATGACCAT
16092480 TTTGCCCTAG
Statistics
Matches: 182, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
26 4 0.02
27 175 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCCTTGTAG
Found at i:16092816 original size:32 final size:32
Alignment explanation
Indices: 16092729--16092816 Score: 92
Period size: 32 Copynumber: 2.8 Consensus size: 32
16092719 GCTATGATGC
*
16092729 TACTGATGGCTTTGTA-CAAATCATAGTACCGT
1 TACTGATGGCTTTCTATC-AATCATAGTACCGT
* *
16092761 TACTGATGGCTTTCTGTCAATCATATTACCGT
1 TACTGATGGCTTTCTATCAATCATAGTACCGT
*
16092793 TAAC-GATGG-TTGTCTATCGATCAT
1 T-ACTGATGGCTT-TCTATCAATCAT
16092817 TTAACTGTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
31 2 0.04
32 43 0.90
33 3 0.06
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTCTATCAATCATAGTACCGT
Done.