Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30015117
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1306243 characters in sequence are not A, C, G, or T
File 75 of 85
Found at i:25945301 original size:3 final size:3
Alignment explanation
Indices: 25945293--25945345 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
25945283 CTTTTCATTC
*
25945293 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
25945341 TTA TT
1 TTA TT
25945346 TTTGTTCTTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:25946737 original size:30 final size:30
Alignment explanation
Indices: 25946703--25946895 Score: 174
Period size: 30 Copynumber: 6.4 Consensus size: 30
25946693 TTCATCGAAC
* * *
25946703 TATGAAAAGGGATCGATTTGGCTGTCAAAT
1 TATGAAAAGGGATAGATTCGGCTATCAAAT
* **
25946733 TATGAAAAGGGATA-ACTTTGATTATCAAAT
1 TATGAAAAGGGATAGA-TTCGGCTATCAAAT
* * *
25946763 TATGAAAAGGGATAGCTTCAGCTGTCAAAT
1 TATGAAAAGGGATAGATTCGGCTATCAAAT
* *
25946793 TATGAAAAGAGATAGCTTCGGCTATCAAAT
1 TATGAAAAGGGATAGATTCGGCTATCAAAT
* * * * * *
25946823 TATGAAAAGGGAT-GGTGACGACCATCGAAC
1 TATGAAAAGGGATAGAT-TCGGCTATCAAAT
* * *
25946853 TATGAAAAGGGATAGCTTCGGCTGTCGAAT
1 TATGAAAAGGGATAGATTCGGCTATCAAAT
25946883 TATGAAAAGGGAT
1 TATGAAAAGGGAT
25946896 GGTGACGACC
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
29 3 0.02
30 128 0.96
31 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.26
Consensus pattern (30 bp):
TATGAAAAGGGATAGATTCGGCTATCAAAT
Found at i:25946857 original size:60 final size:61
Alignment explanation
Indices: 25946793--25946969 Score: 243
Period size: 60 Copynumber: 2.9 Consensus size: 61
25946783 GCTGTCAAAT
* * *
25946793 TATGAAAAGAGATAGCTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCGAA-C
1 TATGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGGGATGGTGACGACCATCGAATA
*
25946853 TATGAAAAGGGATAGCTTCGGCTGTCGAATTATGAAAAGGGATGGTGACGACCATC-AATA
1 TATGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGGGATGGTGACGACCATCGAATA
* * * * *
25946913 TATGAAAAGGGATAGCTTCGACTTTCGAATCAAGGAAAA-GGATGGTGACAACCATCG
1 TATGAAAAGGGATAGCTTCGGCTATCGAAT-TATGAAAAGGGATGGTGACGACCATCG
25946970 TGGTTTTACT
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
59 2 0.02
60 97 0.92
61 6 0.06
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.22
Consensus pattern (61 bp):
TATGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGGGATGGTGACGACCATCGAATA
Found at i:25946917 original size:30 final size:30
Alignment explanation
Indices: 25946820--25946925 Score: 126
Period size: 30 Copynumber: 3.5 Consensus size: 30
25946810 TCGGCTATCA
25946820 AATTATGAAAAGGGATGGTGACGACCATCG
1 AATTATGAAAAGGGATGGTGACGACCATCG
* * * * **
25946850 AACTATGAAAAGGGATAGCT-TCGGCTGTCG
1 AATTATGAAAAGGGAT-GGTGACGACCATCG
25946880 AATTATGAAAAGGGATGGTGACGACCATC-
1 AATTATGAAAAGGGATGGTGACGACCATCG
25946909 AATATATGAAAAGGGAT
1 AAT-TATGAAAAGGGAT
25946926 AGCTTCGACT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
29 5 0.08
30 54 0.89
31 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACGACCATCG
Found at i:25946941 original size:90 final size:90
Alignment explanation
Indices: 25946727--25946941 Score: 231
Period size: 90 Copynumber: 2.4 Consensus size: 90
25946717 GATTTGGCTG
* * * *
25946727 TCAAATTATGAAAAGGGATAACTTTGA-TTATCAAATTATGAAAAGGGATAGCTTCAGCTGTCAA
1 TCAAATTATGAAAAGGGATAGCTTCGACTT-TCGAACTATGAAAAGGGATAGCTTCAGCTGTCAA
* * *
25946791 ATTATGAAAAGAGATAGCTTCGGCTA
65 ATTATGAAAAGAGATAGCTACGACCA
* * ** * *
25946817 TCAAATTATGAAAAGGGAT-GGTGACGACCATCGAACTATGAAAAGGGATAGCTTCGGCTGTCGA
1 TCAAATTATGAAAAGGGATAGCT-TCGACTTTCGAACTATGAAAAGGGATAGCTTCAGCTGTCAA
* *
25946881 ATTATGAAAAGGGAT-GGTGACGACCA
65 ATTATGAAAAGAGATAGCT-ACGACCA
25946907 TC-AATATATGAAAAGGGATAGCTTCGACTTTCGAA
1 TCAAAT-TATGAAAAGGGATAGCTTCGACTTTCGAA
25946942 TCAAGGAAAA
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
89 6 0.06
90 93 0.92
91 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.26
Consensus pattern (90 bp):
TCAAATTATGAAAAGGGATAGCTTCGACTTTCGAACTATGAAAAGGGATAGCTTCAGCTGTCAAA
TTATGAAAAGAGATAGCTACGACCA
Found at i:25948646 original size:22 final size:23
Alignment explanation
Indices: 25948621--25948666 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
25948611 AAATTAGGAG
25948621 AAAGTTTTG-CCAAGCAAGATTT
1 AAAGTTTTGACCAAGCAAGATTT
25948643 AAAGTTTTGACCAAGCAAGATTT
1 AAAGTTTTGACCAAGCAAGATTT
25948666 A
1 A
25948667 CCTTGCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (23 bp):
AAAGTTTTGACCAAGCAAGATTT
Found at i:25949362 original size:19 final size:19
Alignment explanation
Indices: 25949331--25949477 Score: 84
Period size: 21 Copynumber: 7.3 Consensus size: 19
25949321 CTTAATTATA
25949331 CCCTGAATTGTACTTATGTGC
1 CCCTG-ATTGTACTTA-GTGC
* *
25949352 CCCTG-TTGTACTTCAATAC
1 CCCTGATTGTACTT-AGTGC
*
25949371 CCCTGAATTGCACTTACGTGC
1 CCCTG-ATTGTACTTA-GTGC
*
25949392 CCCT-ATTGTACTTCAGTAC
1 CCCTGATTGTACTT-AGTGC
25949411 CCCTGAATT-TCACTTACGTGC
1 CCCTG-ATTGT-ACTTA-GTGC
* * *
25949432 CCCTGTTTGTACTTCAATAC
1 CCCTGATTGTACTT-AGTGC
* *
25949452 CCCTGAATTGCACATACGTGC
1 CCCTG-ATTGTACTTA-GTGC
25949473 CCCTG
1 CCCTG
25949478 TTTACACTCC
Statistics
Matches: 97, Mismatches: 16, Indels: 26
0.70 0.12 0.19
Matches are distributed among these distances:
19 30 0.31
20 19 0.20
21 48 0.49
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (19 bp):
CCCTGATTGTACTTAGTGC
Found at i:25949376 original size:40 final size:40
Alignment explanation
Indices: 25949331--25949479 Score: 235
Period size: 40 Copynumber: 3.7 Consensus size: 40
25949321 CTTAATTATA
* *
25949331 CCCTGAATTGTACTTATGTGCCCCTGTTGTACTTCAATAC
1 CCCTGAATTGCACTTACGTGCCCCTGTTGTACTTCAATAC
* *
25949371 CCCTGAATTGCACTTACGTGCCCCTATTGTACTTCAGTAC
1 CCCTGAATTGCACTTACGTGCCCCTGTTGTACTTCAATAC
*
25949411 CCCTGAATTTCACTTACGTGCCCCTGTTTGTACTTCAATAC
1 CCCTGAATTGCACTTACGTGCCCCTG-TTGTACTTCAATAC
*
25949452 CCCTGAATTGCACATACGTGCCCCTGTT
1 CCCTGAATTGCACTTACGTGCCCCTGTT
25949480 TACACTCCGG
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 62 0.63
41 37 0.37
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.34
Consensus pattern (40 bp):
CCCTGAATTGCACTTACGTGCCCCTGTTGTACTTCAATAC
Found at i:25951069 original size:35 final size:35
Alignment explanation
Indices: 25950966--25951055 Score: 153
Period size: 35 Copynumber: 2.6 Consensus size: 35
25950956 TATAGTCTAT
25950966 AGGCTCTACGAAGCGACACCATGGAAATGGTTTAC
1 AGGCTCTACGAAGCGACACCATGGAAATGGTTTAC
*
25951001 AGGCTCTACAAAGCGACACCATGGAAATGGTTTAC
1 AGGCTCTACGAAGCGACACCATGGAAATGGTTTAC
* *
25951036 AGGCTCTACGGAGCAACACC
1 AGGCTCTACGAAGCGACACC
25951056 TTAAAAAAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.24, T:0.18
Consensus pattern (35 bp):
AGGCTCTACGAAGCGACACCATGGAAATGGTTTAC
Found at i:25952687 original size:15 final size:14
Alignment explanation
Indices: 25952663--25952692 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
25952653 TAATTGTGTT
25952663 ATAAAAAAAAAACA
1 ATAAAAAAAAAACA
25952677 ATAACAAAAAAAACA
1 ATAA-AAAAAAAACA
25952692 A
1 A
25952693 AGATTGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.83, C:0.10, G:0.00, T:0.07
Consensus pattern (14 bp):
ATAAAAAAAAAACA
Found at i:25952821 original size:46 final size:46
Alignment explanation
Indices: 25952750--25952841 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
25952740 ACAAATTAAT
*
25952750 AATATTATCAAAGTGCATAATTAGTAGTACA-CAACATAATAAGTAC
1 AATATTATCAAAGTGCATAACTAGTAGTACACCAA-ATAATAAGTAC
* * * * *
25952796 AATATTGTCTAAGTGCATTACTAGTATTACACCAAATAATTAGTAC
1 AATATTATCAAAGTGCATAACTAGTAGTACACCAAATAATAAGTAC
25952842 TACACCACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.92
47 3 0.08
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (46 bp):
AATATTATCAAAGTGCATAACTAGTAGTACACCAAATAATAAGTAC
Found at i:25953356 original size:30 final size:30
Alignment explanation
Indices: 25953322--25953380 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
25953312 CATCATAATC
25953322 ATCAATGCTTTTCTTTAAAAATGGTTCATG
1 ATCAATGCTTTTCTTTAAAAATGGTTCATG
* *
25953352 ATCAATTCTTTTTTTTAAAAATGGTTCAT
1 ATCAATGCTTTTCTTTAAAAATGGTTCAT
25953381 ACTTCTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (30 bp):
ATCAATGCTTTTCTTTAAAAATGGTTCATG
Found at i:25953877 original size:21 final size:21
Alignment explanation
Indices: 25953852--25953891 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
25953842 CAAGCTTAAC
25953852 ACAAACTAATTTCAATATCCA
1 ACAAACTAATTTCAATATCCA
25953873 ACAAACTAATTTCAATATC
1 ACAAACTAATTTCAATATC
25953892 AATATCCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (21 bp):
ACAAACTAATTTCAATATCCA
Found at i:25957861 original size:29 final size:29
Alignment explanation
Indices: 25957827--25957889 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
25957817 AAAAATGTCA
*
25957827 ATTTTT-AAAAATAATTAGGGAATTAGGCC-
1 ATTTTTCAAAAAT--TTAGGGAAATAGGCCG
*
25957856 ATTTTTCCAAAATTTAGGGAAATAGGCCG
1 ATTTTTCAAAAATTTAGGGAAATAGGCCG
25957885 ATTTT
1 ATTTT
25957890 GGAGAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 14 0.47
29 11 0.37
30 5 0.17
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (29 bp):
ATTTTTCAAAAATTTAGGGAAATAGGCCG
Found at i:25963193 original size:18 final size:18
Alignment explanation
Indices: 25963170--25963205 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25963160 CTATGGCATC
25963170 TTTGAAATAATAATAAAA
1 TTTGAAATAATAATAAAA
* *
25963188 TTTGAATTAATCATAAAA
1 TTTGAAATAATAATAAAA
25963206 CAGCAGGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (18 bp):
TTTGAAATAATAATAAAA
Found at i:25964159 original size:13 final size:13
Alignment explanation
Indices: 25964141--25964170 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25964131 ATTATTTACC
*
25964141 AAAATAATACAAA
1 AAAATAAAACAAA
25964154 AAAATAAAACAAA
1 AAAATAAAACAAA
25964167 AAAA
1 AAAA
25964171 AGGTTGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (13 bp):
AAAATAAAACAAA
Found at i:25964344 original size:10 final size:10
Alignment explanation
Indices: 25964329--25964450 Score: 87
Period size: 10 Copynumber: 12.3 Consensus size: 10
25964319 GAAGGAGAGG
25964329 GAAAGAAGAA
1 GAAAGAAGAA
25964339 GAAAG-A-AA
1 GAAAGAAGAA
*
25964347 GAAAGAAAAA
1 GAAAGAAGAA
25964357 GAAAGAA-AA
1 GAAAGAAGAA
*
25964366 GGAAAGGAGAGGA
1 -GAAA-GA-AGAA
**
25964379 GAGGGAAGAAA
1 GAAAGAAG-AA
25964390 GAAA-AAGAA
1 GAAAGAAGAA
*
25964399 GGAAAGAAAAA
1 -GAAAGAAGAA
*
25964410 GAAAGGAGAA
1 GAAAGAAGAA
25964420 GAAA-AA-AA
1 GAAAGAAGAA
25964428 GAAAGAAAGAA
1 GAAAG-AAGAA
25964439 G-AAGAAGAA
1 GAAAGAAGAA
25964448 GAA
1 GAA
25964451 GAGGGAAGGA
Statistics
Matches: 89, Mismatches: 10, Indels: 26
0.71 0.08 0.21
Matches are distributed among these distances:
8 13 0.15
9 13 0.15
10 45 0.51
11 14 0.16
12 3 0.03
13 1 0.01
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:25964346 original size:4 final size:4
Alignment explanation
Indices: 25964329--25964438 Score: 56
Period size: 4 Copynumber: 27.8 Consensus size: 4
25964319 GAAGGAGAGG
*
25964329 GAAA G-AA G-AA GAAA GAAA GAAA G-AA -AAA GAAA GAAAA GGAAA GGAGAG
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA -GA-AA
* * *
25964377 GAGAG GGAA GAAA G-AA -AAA GAAG GAAA G-AA -AAA GAAA GGAGAA GAAA
1 GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA
*
25964424 AAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAA
25964439 GAAGAAGAAG
Statistics
Matches: 86, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
3 18 0.21
4 45 0.52
5 19 0.22
6 4 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:25964388 original size:43 final size:42
Alignment explanation
Indices: 25964332--25964452 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 42
25964322 GGAGAGGGAA
* *
25964332 AGAAG-AAGAAAGAAAGAAAGAAAAAGAAAGAAAAGGAAAGG
1 AGAAGAAAAAAAGAAAGAAAGAAAAAGAAAGAAAAAGAAAGG
* *** *
25964373 AGAGGAGAGGGAAGAAAGAAA-AAGAAGGAAAGAAAAAGAAAGG
1 AGAAGA-AAAAAAGAAAGAAAGAA-AAAGAAAGAAAAAGAAAGG
* *
25964416 AGAAGAAAAAAAGAAAGAAAGAAGAAG-AAGAAGAAGA
1 AGAAGAAAAAAAGAAAGAAAGAAAAAGAAAGAAAAAGA
25964453 GGGAAGGAAG
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
41 13 0.20
42 15 0.23
43 36 0.56
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (42 bp):
AGAAGAAAAAAAGAAAGAAAGAAAAAGAAAGAAAAAGAAAGG
Found at i:25964430 original size:32 final size:31
Alignment explanation
Indices: 25964383--25964452 Score: 88
Period size: 32 Copynumber: 2.3 Consensus size: 31
25964373 AGAGGAGAGG
* *
25964383 GAAGAA-AGAAAAAGAAGGAAAGAAAAAGAAA
1 GAAGAAGAAAAAAAGAAAGAAAGAAAAAG-AA
* *
25964414 GGAGAAGAAAAAAAGAAAGAAAGAAGAAGAA
1 GAAGAAGAAAAAAAGAAAGAAAGAAAAAGAA
25964445 GAAGAAGA
1 GAAGAAGA
25964453 GGGAAGGAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 14 0.42
32 19 0.58
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (31 bp):
GAAGAAGAAAAAAAGAAAGAAAGAAAAAGAA
Found at i:25965166 original size:159 final size:152
Alignment explanation
Indices: 25964817--25965602 Score: 785
Period size: 159 Copynumber: 5.0 Consensus size: 152
25964807 AAAATGTTAT
* *
25964817 ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
1 ATTTAAAAATCACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATAA
* * *
25964882 AATTAAAAATTCTGATA-TTTTTTAAAGTAATAAAATGC-AGAGAAAAAATACGAACAAATGGCC
66 AATTAGAAATTAT-ATATTTTTTTAAAGTAATAAAATGCGGGA-AAAAAATACGAACAAATGGCC
* * *
25964945 GAAGTAAGAGTGTTTTACTAAATT
129 GAAATAAGAGTCTTTTACTAAATA
* * * * *
25964969 TTTTAAAAATTCAGA-AACAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
1 ATTTAAAAA-TCACACTA-AATTAAT---AA-ATTTCAAACATAATGTACTGAAATAATGTAAAA
* * * *
25965033 TAATAAAA-TACGAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAGCA
60 TAATAAAATTA-GAAATTATATATTTTT-TT-AAAGTAATAAAATGCGGGAAAAAAATACGAACA
** *
25965097 AATGGCAAAAATAAGGATTTCTTTTACACTAAATGA
122 AATGGCCGAAATAA-GA-GTCTTTT--ACTAAAT-A
* * *
25965133 ATTTAAAAATCACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
1 ATTTAAAAATCACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATAA
*
25965198 AATTAGAAATTAT-TATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAAGGGCC
66 AATTAGAAATTATATAT-TTTTTTAAAGTAATAAAATGCGG-GAAAAAAATACGAACAAATGGCC
* *
25965262 GAAGTAAGAGTCTTTTACTAAATT
129 GAAATAAGAGTCTTTTACTAAATA
* * * * * *
25965286 TTTTAAAAATTCAGA-AATAATGAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
1 ATTTAAAAA-TCACACTA-AATTAAT---AA-ATTTCAAACATAATGTACTGAAATAATGTAAAA
* * * * *
25965350 TAATAAAA-TACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATATGAGC
60 TAATAAAATTA-G-AAATTATATATTTTT-TT-AAAGTAATAAAATGCGGGAAAAAAATACGAAC
* * * * *
25965414 AAAGGGCGGGAATAAGGGTTTTTTTACACTAAATTA
121 AAATGGCCGAAATAAGAG-TCTTTT--ACTAAA-TA
* * * * *
25965450 ATTCAAAAAACACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
1 ATTTAAAAATCACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATAA
25965515 AATTAGAAATTATGATATTTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCC
66 AATTAGAAATTAT-ATATTTTTTTAAAGTAATAAAATGCGG-GAAAAAAATACGAACAAATGGCC
*
25965580 GAAGTAAGAGTCTTTTACTAAAT
129 GAAATAAGAGTCTTTTACTAAAT
25965603 TTTTCAAAAA
Statistics
Matches: 515, Mismatches: 80, Indels: 76
0.77 0.12 0.11
Matches are distributed among these distances:
152 9 0.02
153 19 0.04
154 18 0.03
155 6 0.01
156 13 0.03
157 90 0.17
158 101 0.20
159 139 0.27
160 43 0.08
161 26 0.05
163 33 0.06
164 18 0.03
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (152 bp):
ATTTAAAAATCACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATAA
AATTAGAAATTATATATTTTTTTAAAGTAATAAAATGCGGGAAAAAAATACGAACAAATGGCCGA
AATAAGAGTCTTTTACTAAATA
Found at i:25965362 original size:317 final size:317
Alignment explanation
Indices: 25964817--25965624 Score: 1386
Period size: 317 Copynumber: 2.5 Consensus size: 317
25964807 AAAATGTTAT
* * * *
25964817 ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
1 ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
* * *
25964882 AATTAAAAATTCTGATATTTTTTAAAGTAATAAAATGCAGAG-AAAAAATACGAACAAATGGCCG
66 AATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCG
* * *
25964946 AAGTAAGAGTGTTTTACTAAATTTTTTAAAAATTCAGAAACAATTAATACAAATATTTCAAACAA
131 AAGTAAGAGTCTTTTACTAAATTTTTTAAAAATTCAGAAATAATGAATACAAATATTTCAAACAA
25965011 AATGTACTGAAATAATATAAAATAATAAAATACG-AAATAATATATTTTTATTGAAAGTAATAAA
196 AATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
*
25965075 ATTCGGGAAAATAATACGAGCAAATGGCAAAAATAAGGATTTCTTTTACACTAAATGA
261 ATTCGGGAAAATAATACGAGCAAAGGGCAAAAATAAGGATTT-TTTTACACTAAATGA
*
25965133 ATTTAAAAATCACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
1 ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
* *
25965198 AATTAGAAATTATTATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAAGGGCCG
66 AATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCG
25965263 AAGTAAGAGTCTTTTACTAAATTTTTTAAAAATTCAGAAATAATGAATACAAATATTTCAAACAA
131 AAGTAAGAGTCTTTTACTAAATTTTTTAAAAATTCAGAAATAATGAATACAAATATTTCAAACAA
25965328 AATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
196 AATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
* *** * *
25965393 ATTCGGGAAAATAATATGAGCAAAGGGCGGGAATAAGGGTTTTTTTACACTAAATTA
261 ATTCGGGAAAATAATACGAGCAAAGGGCAAAAATAAGGATTTTTTTACACTAAATGA
*
25965450 ATTCAAAAAACACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
1 ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
25965515 AATTAGAAATTATGATATTTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCC
66 AATTAGAAATTATGATA-TTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCC
*
25965580 GAAGTAAGAGTCTTTTACTAAATTTTTCAAAAATTCAGAAATAAT
130 GAAGTAAGAGTCTTTTACTAAATTTTTTAAAAATTCAGAAATAAT
25965625 TTTTAAAAAT
Statistics
Matches: 464, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
316 98 0.21
317 210 0.45
318 156 0.34
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (317 bp):
ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAA
AATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCG
AAGTAAGAGTCTTTTACTAAATTTTTTAAAAATTCAGAAATAATGAATACAAATATTTCAAACAA
AATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
ATTCGGGAAAATAATACGAGCAAAGGGCAAAAATAAGGATTTTTTTACACTAAATGA
Found at i:25965632 original size:21 final size:22
Alignment explanation
Indices: 25965600--25965645 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
25965590 TCTTTTACTA
25965600 AATTTTTCAAAAATTCAGAAAT
1 AATTTTTCAAAAATTCAGAAAT
25965622 AATTTTT-AAAAATTCAGAAAT
1 AATTTTTCAAAAATTCAGAAAT
25965643 AAT
1 AAT
25965646 ATATTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (22 bp):
AATTTTTCAAAAATTCAGAAAT
Found at i:25965690 original size:119 final size:117
Alignment explanation
Indices: 25965513--25965725 Score: 313
Period size: 119 Copynumber: 1.8 Consensus size: 117
25965503 GTAAAATTAT
*
25965513 AAAATTAGAAATTATGATATTTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGG
1 AAAATTAGAAATAATGATATTTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGG
*
25965578 CCGAAGTAAGAGTCTTTTACTAAATTTTTCAAAAATTCAGAAATAATTTTTA
66 CCGAAATAAGAGTCTTTTACTAAATTTTTCAAAAATTCAGAAATAATTTTTA
*
25965630 AAAATTCAGAAATAAT-ATATTTTTATTGAAAGTAATAAAATTCAGGA-AAAAAAATACGAACAA
1 AAAATT-AGAAATAATGATATTTTT-TT-AAAGTAATAAAATGC-GGAGAAAAAAATACGAACAA
* * * *
25965693 GTGGCCGAAATAAGGGTTTTTTACTAATTTTTT
62 ATGGCCGAAATAAGAGTCTTTTACTAAATTTTT
25965726 TTAGAAAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
117 14 0.16
118 10 0.12
119 58 0.68
120 3 0.04
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (117 bp):
AAAATTAGAAATAATGATATTTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGG
CCGAAATAAGAGTCTTTTACTAAATTTTTCAAAAATTCAGAAATAATTTTTA
Found at i:25981626 original size:10 final size:10
Alignment explanation
Indices: 25981611--25981642 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
25981601 AAAAATTAAA
25981611 ATATATGTAT
1 ATATATGTAT
25981621 ATATATGTAT
1 ATATATGTAT
*
25981631 ATATATATAT
1 ATATATGTAT
25981641 AT
1 AT
25981643 GTATTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (10 bp):
ATATATGTAT
Found at i:25981944 original size:3 final size:3
Alignment explanation
Indices: 25981936--25981993 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
25981926 AAAAACAATT
* *
25981936 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25981984 ATA ATA ATA A
1 ATA ATA ATA A
25981994 AATTGCTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:25985704 original size:6 final size:6
Alignment explanation
Indices: 25985693--25985731 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
25985683 TTTTTCTTCT
25985693 TTTTTG TTTTTG TTTTTG -TTTTG -TTTTG TTTTT- TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
25985732 GACCTTCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 15 0.48
6 16 0.52
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:25985708 original size:11 final size:11
Alignment explanation
Indices: 25985693--25985731 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
25985683 TTTTTCTTCT
25985693 TTTTTGTTTTTG
1 TTTTTG-TTTTG
25985705 TTTTTGTTTTG
1 TTTTTGTTTTG
*
25985716 -TTTTGTTTTT
1 TTTTTGTTTTG
25985726 TTTTTG
1 TTTTTG
25985732 GACCTTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 9 0.36
11 10 0.40
12 6 0.24
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (11 bp):
TTTTTGTTTTG
Found at i:25985729 original size:10 final size:10
Alignment explanation
Indices: 25985682--25985729 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
25985672 TGGCCTCTCC
* *
25985682 TTTTTTCTTC
1 TTTTTTGTTT
25985692 TTTTTTGTTTT
1 TTTTTTG-TTT
25985703 TGTTTTTGTTT
1 T-TTTTTGTTT
*
25985714 TGTTTTGTTT
1 TTTTTTGTTT
25985724 TTTTTT
1 TTTTTT
25985730 TGGACCTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 19 0.59
11 7 0.22
12 6 0.19
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.85
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:26000387 original size:10 final size:10
Alignment explanation
Indices: 26000372--26000397 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26000362 AAAAATTAAA
26000372 ATATATGTAT
1 ATATATGTAT
26000382 ATATATGTAT
1 ATATATGTAT
26000392 ATATAT
1 ATATAT
26000398 ATATGTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (10 bp):
ATATATGTAT
Found at i:26000398 original size:14 final size:14
Alignment explanation
Indices: 26000379--26000405 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26000369 AAAATATATG
26000379 TATATATATGTATA
1 TATATATATGTATA
26000393 TATATATATGTAT
1 TATATATATGTAT
26000406 TTACAAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TATATATATGTATA
Found at i:26000711 original size:3 final size:3
Alignment explanation
Indices: 26000703--26000760 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
26000693 AAAAACAATT
* *
26000703 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26000751 ATA ATA ATA A
1 ATA ATA ATA A
26000761 AATTGCTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:26023096 original size:21 final size:21
Alignment explanation
Indices: 26023070--26023111 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26023060 CTAGCAGGAC
* *
26023070 AGCTGATGTGGCAAGTTAACT
1 AGCTGATATGACAAGTTAACT
*
26023091 AGCTGATATGACCAGTTAACT
1 AGCTGATATGACAAGTTAACT
26023112 TGCCACGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (21 bp):
AGCTGATATGACAAGTTAACT
Found at i:26028674 original size:15 final size:15
Alignment explanation
Indices: 26028654--26028686 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26028644 TAGATCAAAT
26028654 TATCATTTATAATTG
1 TATCATTTATAATTG
26028669 TATCATTTATAATTG
1 TATCATTTATAATTG
26028684 TAT
1 TAT
26028687 ATATATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (15 bp):
TATCATTTATAATTG
Found at i:26029908 original size:6 final size:6
Alignment explanation
Indices: 26029891--26029942 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
26029881 CGAAATGGAG
* * * *
26029891 AAATGG AAATGA AAATGA AGATGA AAATGA AGATGA AAATGA AGATGA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA
26029939 AAAT
1 AAAT
26029943 TTGCAATCCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (6 bp):
AAATGA
Found at i:26029914 original size:12 final size:12
Alignment explanation
Indices: 26029899--26029942 Score: 88
Period size: 12 Copynumber: 3.7 Consensus size: 12
26029889 AGAAATGGAA
26029899 ATGAAAATGAAG
1 ATGAAAATGAAG
26029911 ATGAAAATGAAG
1 ATGAAAATGAAG
26029923 ATGAAAATGAAG
1 ATGAAAATGAAG
26029935 ATGAAAAT
1 ATGAAAAT
26029943 TTGCAATCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.23, T:0.18
Consensus pattern (12 bp):
ATGAAAATGAAG
Found at i:26029926 original size:24 final size:24
Alignment explanation
Indices: 26029891--26029942 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
26029881 CGAAATGGAG
26029891 AAATGGAAATGAAAATGAAGATGA
1 AAATGGAAATGAAAATGAAGATGA
26029915 AAAT-GAAGATGAAAATGAAGATGA
1 AAATGGAA-ATGAAAATGAAGATGA
26029939 AAAT
1 AAAT
26029943 TTGCAATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (24 bp):
AAATGGAAATGAAAATGAAGATGA
Found at i:26030121 original size:26 final size:26
Alignment explanation
Indices: 26030085--26030146 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
26030075 ATATTTTCTT
* *
26030085 AAAATTTTACCAGGGAT-AAATTCGTC
1 AAAATTTTACCAAGAATAAAATT-GTC
26030111 AAAATTTTACCAAGAATAAAATTGTC
1 AAAATTTTACCAAGAATAAAATTGTC
26030137 AAAATTTTAC
1 AAAATTTTAC
26030147 TAAGGGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 28 0.85
27 5 0.15
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (26 bp):
AAAATTTTACCAAGAATAAAATTGTC
Found at i:26030156 original size:26 final size:26
Alignment explanation
Indices: 26030085--26030158 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
26030075 ATATTTTCTT
*
26030085 AAAATTTTACCAGGG-ATAAATTCGTC
1 AAAATTTTACAAGGGTA-AAATTCGTC
**
26030111 AAAATTTTACCAAGAATAAAATT-GTC
1 AAAATTTTA-CAAGGGTAAAATTCGTC
26030137 AAAATTTTACTAAGGGTAAAAT
1 AAAATTTTAC-AAGGGTAAAAT
26030159 AGGAATGAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.03
26 30 0.75
27 8 0.20
28 1 0.03
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (26 bp):
AAAATTTTACAAGGGTAAAATTCGTC
Found at i:26038997 original size:17 final size:18
Alignment explanation
Indices: 26038969--26039006 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
26038959 TACATTTGGT
26038969 ATTGTATGAATTAAATTA
1 ATTGTATGAATTAAATTA
*
26038987 ATTGT-TGAATTAATTTA
1 ATTGTATGAATTAAATTA
26039004 ATT
1 ATT
26039007 TGATAGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (18 bp):
ATTGTATGAATTAAATTA
Found at i:26045416 original size:75 final size:75
Alignment explanation
Indices: 26045325--26045473 Score: 239
Period size: 75 Copynumber: 2.0 Consensus size: 75
26045315 ATGGAAATTA
*
26045325 ATATTCTTTTGGAAAGAATACAA-TACCTTTTTCTAACTTTTCATTTGCCTTC-TCTATTAATAA
1 ATATTCTTTTGGAAAGAATACAATTA-CTTTTTCTAACTTTCCATTTGCCTTCAT-TATTAATAA
26045388 GGGAATAATCCT
64 GGGAATAATCCT
* *
26045400 ATATTCTTTTTGAAAGAATATAATTACTTTTTCTAACTTTCCATTTGCCTTCATTATTAATAAGG
1 ATATTCTTTTGGAAAGAATACAATTACTTTTTCTAACTTTCCATTTGCCTTCATTATTAATAAGG
26045465 GAATAATCC
66 GAATAATCC
26045474 AAGTTTTCCT
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
75 66 0.96
76 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.44
Consensus pattern (75 bp):
ATATTCTTTTGGAAAGAATACAATTACTTTTTCTAACTTTCCATTTGCCTTCATTATTAATAAGG
GAATAATCCT
Found at i:26070991 original size:29 final size:29
Alignment explanation
Indices: 26070935--26071034 Score: 119
Period size: 30 Copynumber: 3.4 Consensus size: 29
26070925 AAAATTTACT
* *
26070935 AATTATATTTTGGCCCCTAATTTTTTCTAA
1 AATTACATTTTGG-CCCTAACTTTTTCTAA
26070965 AATTACATTTTGGCCCTAACTTTTTCTAA
1 AATTACATTTTGGCCCTAACTTTTTCTAA
** * * *
26070994 AATTACATTTTAACACTTAACTTCTCCTAA
1 AATTACATTTTGGC-CCTAACTTTTTCTAA
26071024 AATTACATTTT
1 AATTACATTTT
26071035 TTACCTCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 27 0.44
30 35 0.56
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (29 bp):
AATTACATTTTGGCCCTAACTTTTTCTAA
Found at i:26071527 original size:24 final size:24
Alignment explanation
Indices: 26071487--26071555 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
26071477 CCTTGATTTG
*
26071487 AAGAAGAGAAATG-AGAAAAGAAAA
1 AAGAGGAGAAA-GAAGAAAAGAAAA
*
26071511 AAGAGGAGAAAGAAG-AAAGAAGA
1 AAGAGGAGAAAGAAGAAAAGAAAA
* *
26071534 GAGAAGGAGAAGAGAAAAAAAG
1 AAG-AGGAGAA-AGAAGAAAAG
26071556 GAAAGCGCTG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
23 10 0.27
24 19 0.51
25 4 0.11
26 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (24 bp):
AAGAGGAGAAAGAAGAAAAGAAAA
Found at i:26071665 original size:20 final size:17
Alignment explanation
Indices: 26071628--26071664 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
26071618 CGAGAGAAGG
26071628 AGAAGAAAAAGAAAGAA
1 AGAAGAAAAAGAAAGAA
26071645 AGAAGAAAAAGAAA-AA
1 AGAAGAAAAAGAAAGAA
26071661 AGAA
1 AGAA
26071665 AATAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAGAAAAAGAAAGAA
Found at i:26071671 original size:17 final size:17
Alignment explanation
Indices: 26071628--26071671 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
26071618 CGAGAGAAGG
*
26071628 AGAAGAAAAAGAAAGAA
1 AGAAAAAAAAGAAAGAA
*
26071645 AGAAGAAAAAGAAA-AA
1 AGAAAAAAAAGAAAGAA
26071661 AGAAAATAAAA
1 AGAAAA-AAAA
26071672 ATAGTCGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (17 bp):
AGAAAAAAAAGAAAGAA
Found at i:26077320 original size:18 final size:18
Alignment explanation
Indices: 26077299--26077336 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26077289 ATGAAAAGAT
*
26077299 AATTAATTTTTTGTGCAG
1 AATTAATTTTTCGTGCAG
26077317 AATTAATTTTTCGTGCAG
1 AATTAATTTTTCGTGCAG
26077335 AA
1 AA
26077337 AGGTCGAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (18 bp):
AATTAATTTTTCGTGCAG
Found at i:26078636 original size:18 final size:17
Alignment explanation
Indices: 26078610--26078678 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 17
26078600 GCAATAAAAA
*
26078610 AACGTTTTGAAATTGAAT
1 AACGATTTGAAA-TGAAT
26078628 AACGATTTGTAAATGAAT
1 AACGATTTG-AAATGAAT
* * *
26078646 AATGTTTTGGAAATGAACG
1 AACGATTT-GAAATGAA-T
26078665 ACACGATTTGAAAT
1 A-ACGATTTGAAAT
26078679 TAACATAAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
18 26 0.63
19 10 0.24
20 5 0.12
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (17 bp):
AACGATTTGAAATGAAT
Found at i:26084316 original size:74 final size:74
Alignment explanation
Indices: 26084041--26085501 Score: 1693
Period size: 74 Copynumber: 19.6 Consensus size: 74
26084031 TCCATTCTTT
* * *
26084041 TTTCTGTTTTTCAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCAGGTCGCATGCCG
1 TTTC-GTTTTTC--AAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCG
26084106 AGGTATTTTCAA
63 AGGTATTTTCAA
** * * *
26084118 TTTTATTTTTCAAAAAAATCAACTCATAA-TCTGATAGGTGACTTGAGCCTCGGGTCGCACACCG
1 TTTCGTTTTTC--AAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCGCACGCCG
26084182 AGGTATTCTT-AA
63 AGGTATT-TTCAA
** * * * * * *
26084194 TTTTTTTTTTAAAAAAATCAACGCATAATCCGAGAGGTGAGTTGAGCCTTGGGCCGCACGCCAAG
1 TTTCGTTTTT-CAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26084259 GTATTTTCAA
65 GTATTTTCAA
26084269 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
*
26084334 TATTCTCAA
66 TATTTTCAA
* * * *
26084343 TTTCGTTTTTCAAAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCAGGTCGTACACCGA
1 TTTCGTTTTTC--AAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGA
26084408 GGTATTTTCAA
64 GGTATTTTCAA
* * * *
26084419 TTTCATTTTTCAAAAATCAACTCATAA-TCTGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAG
1 TTTCGTTTTTCAAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26084483 GTATTTTCAA
65 GTATTTTCAA
* * * * * *
26084493 TTTTC-TTTTTTAAAAATCAACTCATAA-TCTGAGAGGTAAGTTAAGCATCGGGTCGTATGCCGA
1 -TTTCGTTTTTCAAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGA
26084556 GGTATTTTCAA
64 GGTATTTTCAA
** * * * * *
26084567 TTTTATTTTTCAAAAACCAACTCATAA-TCTGAAAGGTGAGTTGAGCCTTGGGTCGCATGCTGAG
1 TTTCGTTTTTCAAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26084631 GTATTTTCAA
65 GTATTTTCAA
* * * * *** *
26084641 TTTCGTTTTTCAAAAATCAACTCATAATCCGAGAGCTAAATTGATATTTGGGTCGCACGCCGAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
26084706 TATTTTCAA
66 TATTTTCAA
* * * *
26084715 TTTTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGATCCTCGGGTCGCACGCTGAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
26084780 TATTTTCAA
66 TATTTTCAA
* * * * *
26084789 TTTCTTTTTTCAAAATTCAACTCATAA-TCTGAGAGGTGAGTTGAGCCCCGAGTCGCACGCTGAG
1 TTTCGTTTTTCAAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26084853 GTATTTTCAA
65 GTATTTTCAA
* *
26084863 TTT--TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
26084926 TATTTTCAA
66 TATTTTCAA
* * * * * * * * **
26084935 TTCCCTTTTTCAAAATTCAACTCATAATCCGAAAGGTGAGTTAAGCCTCGAGTCGAACGCTAAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
*
26085000 TATTTTCAG
66 TATTTTCAA
* * * * * *
26085009 TTTTGTTATTCAAAAATCAACTTATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGA
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
26085074 TATTTTCAA
66 TATTTTCAA
* * * * *
26085083 TTTCTTTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTTGCACGTCAAG
1 TTTC-GTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26085148 GTATTTTCAA
65 GTATTTTCAA
* ** * ** * **
26085158 TTTCATTTTTCAAAGTTTAACTCATAATTTTAGAGGTGAGTTGAGCCTCCGGTCGCACGTTGAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
*
26085223 TATTTTTAA
66 TATTTTCAA
* * *
26085232 TTTCGTTTTTCAAAAATCAACTCATAA-TCTAAGAGGTGAGTTGAGCTTCGGGTCGCACACCGAG
1 TTTCGTTTTTCAAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26085296 GTATTTTCAA
65 GTATTTTCAA
* * **
26085306 TTAT-GTTTTTCAAAAATCAACTCATAATTTGAGAGGTGAGTTGAGCCTCGGGTCGCATGTTGAG
1 TT-TCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
26085370 GTATTTTCAA
65 GTATTTTCAA
* * * ** * *
26085380 TTTTGTTTTTCAAAAATCAACTAATAATTCGAGAGGCGAGTTGAGCCTCGATTTGCACGTCGAGG
1 TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
26085445 TATTTTCAA
66 TATTTTCAA
* * * * *
26085454 TTTCTATTTTTTCAAATATCAACTCATAATCCAAGAGGTAAGTTGAGC
1 TTTC--GTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGC
26085502 TTCAGGTTAC
Statistics
Matches: 1196, Mismatches: 166, Indels: 45
0.85 0.12 0.03
Matches are distributed among these distances:
72 65 0.05
73 8 0.01
74 813 0.68
75 132 0.11
76 173 0.14
77 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTCGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGG
TATTTTCAA
Found at i:26086161 original size:30 final size:29
Alignment explanation
Indices: 26086079--26086178 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 29
26086069 TACTAACTAC
* *
26086079 ATTTTGGCCCTAACTTTTTCTAAAATTAC
1 ATTTTGACCCTAACTTTTTCTAAAATTAT
*
26086108 ATTTTGGCCCTAACTTTTTCTAAAATTAT
1 ATTTTGACCCTAACTTTTTCTAAAATTAT
** *
26086137 ATTTTGACCCTAAACTTTCCCTAAAATTGT
1 ATTTTGACCCT-AACTTTTTCTAAAATTAT
26086167 ATTTTGACCCTA
1 ATTTTGACCCTA
26086179 GAAATTTTGC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 39 0.60
30 26 0.40
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (29 bp):
ATTTTGACCCTAACTTTTTCTAAAATTAT
Found at i:26086632 original size:15 final size:15
Alignment explanation
Indices: 26086579--26086633 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 15
26086569 TAAAGAAGAG
26086579 AAAGGAGAAAAGAAA
1 AAAGGAGAAAAGAAA
*
26086594 AAAGAAGAGAAAGAAGA
1 AAAGGAGA-AAAGAA-A
26086611 GAGAAGGAGAAAAGAAA
1 -A-AAGGAGAAAAGAAA
26086628 AAAGGA
1 AAAGGA
26086634 AAGCGCCGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
15 12 0.35
16 7 0.21
17 2 0.06
18 7 0.21
19 6 0.18
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAAGGAGAAAAGAAA
Found at i:26086725 original size:9 final size:9
Alignment explanation
Indices: 26086713--26086757 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
26086703 AGAGAAGGAG
26086713 AAGAAAAAA
1 AAGAAAAAA
*
26086722 AAGAAAAAG
1 AAGAAAAAA
*
26086731 AAGGAAAAA
1 AAGAAAAAA
26086740 AAGAAAGAAA
1 AAGAAA-AAA
26086750 AAGAAAAA
1 AAGAAAAA
26086758 TATAAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 22 0.71
10 9 0.29
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:26086746 original size:22 final size:24
Alignment explanation
Indices: 26086705--26086754 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 24
26086695 TGGAGTCGAG
26086705 AGAAGGAGAAGAAAAAAAAGAAAA
1 AGAAGGAGAAGAAAAAAAAGAAAA
*
26086729 AGAAGGA-AA-AAAAGAAAGAAAA
1 AGAAGGAGAAGAAAAAAAAGAAAA
26086751 AGAA
1 AGAA
26086755 AAATATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 16 0.64
23 2 0.08
24 7 0.28
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (24 bp):
AGAAGGAGAAGAAAAAAAAGAAAA
Found at i:26086853 original size:14 final size:14
Alignment explanation
Indices: 26086834--26086879 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
26086824 TGGCCCAGCA
*
26086834 AACAGCAGCAGCCC
1 AACAGCAACAGCCC
26086848 AACAGCAACAGCCC
1 AACAGCAACAGCCC
* *
26086862 AACAACAATAGCCC
1 AACAGCAACAGCCC
26086876 AACA
1 AACA
26086880 ACAGACCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.46, C:0.39, G:0.13, T:0.02
Consensus pattern (14 bp):
AACAGCAACAGCCC
Found at i:26086930 original size:14 final size:14
Alignment explanation
Indices: 26086834--26086931 Score: 60
Period size: 14 Copynumber: 7.0 Consensus size: 14
26086824 TGGCCCAGCA
*
26086834 AACAGCAGCAGCCC
1 AACAGCAGTAGCCC
**
26086848 AACAGCAACAGCCC
1 AACAGCAGTAGCCC
* *
26086862 AACAACAATAGCCC
1 AACAGCAGTAGCCC
*
26086876 AACAACAG-A-CCC
1 AACAGCAGTAGCCC
* *
26086888 ACTCCAGCTGTAGCCC
1 A--ACAGCAGTAGCCC
26086904 AATC--CAGTCAGCCC
1 AA-CAGCAGT-AGCCC
26086918 AACAGCAGTAGCCC
1 AACAGCAGTAGCCC
26086932 TACCCAACAA
Statistics
Matches: 67, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
12 4 0.06
13 5 0.07
14 48 0.72
15 6 0.09
16 4 0.06
ACGTcount: A:0.37, C:0.41, G:0.15, T:0.07
Consensus pattern (14 bp):
AACAGCAGTAGCCC
Found at i:26088310 original size:25 final size:25
Alignment explanation
Indices: 26088272--26088343 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
26088262 GAGCAGAGCC
* * *
26088272 ATATTCACAGCTCGTGTGAGTATTT
1 ATATTCACAACTCGTGTAAGCATTT
26088297 ATATTCACAACTCGTGTAAGCATTT
1 ATATTCACAACTCGTGTAAGCATTT
26088322 ATATTCACAACTCGTGTAAGCA
1 ATATTCACAACTCGTGTAAGCA
26088344 ACTCTATCCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (25 bp):
ATATTCACAACTCGTGTAAGCATTT
Found at i:26104632 original size:88 final size:89
Alignment explanation
Indices: 26104521--26104698 Score: 349
Period size: 88 Copynumber: 2.0 Consensus size: 89
26104511 ATTATTTTAA
26104521 TTTTTATGAGATTATATTAAGGTTGTATTAAAATTTCGTTAAGAAATTTTAAATTTTATATAGTT
1 TTTTTATGAGATTATATTAAGGTTGTATTAAAATTTCGTTAAGAAATTTTAAATTTTATATAGTT
26104586 AATTAAGTGAAAAAGGTTAAATCG
66 AATTAAGTGAAAAAGGTTAAATCG
26104610 TTTTTATGAGA-TATATTAAGGTTGTATTAAAATTTCGTTAAGAAATTTTAAATTTTATATAGTT
1 TTTTTATGAGATTATATTAAGGTTGTATTAAAATTTCGTTAAGAAATTTTAAATTTTATATAGTT
26104674 AATTAAGTGAAAAAGGTTAAATCG
66 AATTAAGTGAAAAAGGTTAAATCG
26104698 T
1 T
26104699 AAAATGTGTA
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
88 78 0.88
89 11 0.12
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (89 bp):
TTTTTATGAGATTATATTAAGGTTGTATTAAAATTTCGTTAAGAAATTTTAAATTTTATATAGTT
AATTAAGTGAAAAAGGTTAAATCG
Found at i:26112600 original size:20 final size:20
Alignment explanation
Indices: 26112575--26112615 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26112565 ACTTCTTTTA
*
26112575 AAGTCTTTCCAATATGGAGG
1 AAGTCTGTCCAATATGGAGG
* *
26112595 AAGTCTGTCTATTATGGAGG
1 AAGTCTGTCCAATATGGAGG
26112615 A
1 A
26112616 TACAAAAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (20 bp):
AAGTCTGTCCAATATGGAGG
Found at i:26114161 original size:10 final size:10
Alignment explanation
Indices: 26114132--26114167 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
26114122 AAATTAATAA
26114132 ATTTGTACAT
1 ATTTGTACAT
26114142 ATAATTGTACAT
1 AT--TTGTACAT
26114154 ATTTGTACAT
1 ATTTGTACAT
26114164 ATTT
1 ATTT
26114168 TTTAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 14 0.58
12 10 0.42
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (10 bp):
ATTTGTACAT
Found at i:26115088 original size:27 final size:27
Alignment explanation
Indices: 26115058--26115112 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
26115048 TTCGACTAAG
26115058 TTAAATTTAAATTATTTTTTTATAAAT
1 TTAAATTTAAATTATTTTTTTATAAAT
*
26115085 TTAAATTTAAATTTTTTTTTTATAAAT
1 TTAAATTTAAATTATTTTTTTATAAAT
26115112 T
1 T
26115113 AAGATAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
TTAAATTTAAATTATTTTTTTATAAAT
Found at i:26115121 original size:24 final size:25
Alignment explanation
Indices: 26115058--26115135 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 25
26115048 TTCGACTAAG
*
26115058 TTAAATTTAAATTATTTTTTTATAAA
1 TTAAA-TTAAATTTTTTTTTTATAAA
26115084 TTTAAATTTAAATTTTTTTTTTATAAA
1 -TTAAA-TTAAATTTTTTTTTTATAAA
*
26115111 TTAAGA-T-AATTTTTTTGTTATAAA
1 TTAA-ATTAAATTTTTTTTTTATAAA
26115135 T
1 T
26115136 AAGCGGATGA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.35
25 1 0.02
26 4 0.08
27 26 0.54
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (25 bp):
TTAAATTAAATTTTTTTTTTATAAA
Found at i:26115229 original size:85 final size:85
Alignment explanation
Indices: 26115129--26115293 Score: 330
Period size: 85 Copynumber: 1.9 Consensus size: 85
26115119 ATTTTTTTGT
26115129 TATAAATAAGCGGATGATCGTGTTTTGGAGGCGTTCATACATAATTTGGCAAAGCCTCTGATCAC
1 TATAAATAAGCGGATGATCGTGTTTTGGAGGCGTTCATACATAATTTGGCAAAGCCTCTGATCAC
26115194 CAAAATTCGTGGTTAGTTGA
66 CAAAATTCGTGGTTAGTTGA
26115214 TATAAATAAGCGGATGATCGTGTTTTGGAGGCGTTCATACATAATTTGGCAAAGCCTCTGATCAC
1 TATAAATAAGCGGATGATCGTGTTTTGGAGGCGTTCATACATAATTTGGCAAAGCCTCTGATCAC
26115279 CAAAATTCGTGGTTA
66 CAAAATTCGTGGTTA
26115294 CTTGCAAGAC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32
Consensus pattern (85 bp):
TATAAATAAGCGGATGATCGTGTTTTGGAGGCGTTCATACATAATTTGGCAAAGCCTCTGATCAC
CAAAATTCGTGGTTAGTTGA
Found at i:26124392 original size:57 final size:58
Alignment explanation
Indices: 26124310--26124428 Score: 179
Period size: 57 Copynumber: 2.1 Consensus size: 58
26124300 AGAAATGGTG
*
26124310 AAATGGAGAAATAGGAAACATTTGGAAATGATTATGGTTTTCTCCAAAATG-AAAATGA
1 AAATGGAGAAATA-GAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
* *
26124368 AAATGGAGAAATA-AAATCATTTGGAAATGAATGTGGTTTTCTCCAAAGTGAAAAATGA
1 AAATGGAGAAATAGAAA-CATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
26124426 AAA
1 AAA
26124429 AGACTTGAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
56 3 0.05
57 30 0.54
58 23 0.41
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (58 bp):
AAATGGAGAAATAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
Found at i:26128645 original size:23 final size:23
Alignment explanation
Indices: 26128618--26128671 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
26128608 GGTCAAATGA
26128618 TGGTATGTTTTGAATGACCAACT
1 TGGTATGTTTTGAATGACCAACT
*
26128641 TGGTACGTTTTGAATGACCAACT
1 TGGTATGTTTTGAATGACCAACT
*
26128664 TGGCATGT
1 TGGTATGT
26128672 AGTCATTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (23 bp):
TGGTATGTTTTGAATGACCAACT
Found at i:26134404 original size:17 final size:16
Alignment explanation
Indices: 26134375--26134417 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
26134365 TCAGAATTTC
* *
26134375 ATAAGTTTGGTAATCA
1 ATAAGTTTTGTAACCA
26134391 ATAATGTTTTGTAACCA
1 ATAA-GTTTTGTAACCA
26134408 ATAACGTTTT
1 ATAA-GTTTT
26134418 CGATAATGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (16 bp):
ATAAGTTTTGTAACCA
Found at i:26144996 original size:15 final size:15
Alignment explanation
Indices: 26144976--26145005 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26144966 TTTTGATCAG
*
26144976 GTAAAAGTTCTTTTA
1 GTAAAAATTCTTTTA
26144991 GTAAAAATTCTTTTA
1 GTAAAAATTCTTTTA
26145006 ACTATTCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (15 bp):
GTAAAAATTCTTTTA
Found at i:26146013 original size:19 final size:21
Alignment explanation
Indices: 26145991--26146035 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
26145981 GGAATAAGTC
*
26145991 AAAAAA-TATGGGCAAACT-T
1 AAAAAATTAAGGGCAAACTAT
*
26146010 AAAAAATTAAGGGTAAACTAT
1 AAAAAATTAAGGGCAAACTAT
26146031 AAAAA
1 AAAAA
26146036 TAGTCACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (21 bp):
AAAAAATTAAGGGCAAACTAT
Found at i:26146335 original size:16 final size:17
Alignment explanation
Indices: 26146307--26146351 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
26146297 TTCAAAAATA
26146307 AAAAATTTT-AAATTTT
1 AAAAATTTTAAAATTTT
26146323 -AAAATTTTAAAATTTT
1 AAAAATTTTAAAATTTT
26146339 AAAAATTTTAAAA
1 AAAAATTTTAAAA
26146352 AAAATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.30
16 7 0.26
17 12 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAAATTTTAAAATTTT
Found at i:26146352 original size:9 final size:8
Alignment explanation
Indices: 26146308--26146351 Score: 72
Period size: 8 Copynumber: 5.5 Consensus size: 8
26146298 TCAAAAATAA
26146308 AAAATTTT
1 AAAATTTT
26146316 -AAATTTT
1 AAAATTTT
26146323 AAAATTTT
1 AAAATTTT
26146331 AAAATTTT
1 AAAATTTT
26146339 AAAAATTTT
1 -AAAATTTT
26146348 AAAA
1 AAAA
26146352 AAAATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.21
8 19 0.56
9 8 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
AAAATTTT
Found at i:26146462 original size:21 final size:21
Alignment explanation
Indices: 26146437--26146491 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
26146427 TCTAACATGG
* *
26146437 ATTTTATTTATTAAAATAATA
1 ATTTTATTAAATAAAATAATA
26146458 ATTTTA-TAAATAAAATAATA
1 ATTTTATTAAATAAAATAATA
*
26146478 ATCTTA-TAAATAAA
1 ATTTTATTAAATAAA
26146492 CCAATTTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTTTATTAAATAAAATAATA
Found at i:26146473 original size:20 final size:20
Alignment explanation
Indices: 26146448--26146491 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
26146438 TTTTATTTAT
*
26146448 TAAAATAATAATTTTATAAA
1 TAAAATAATAATCTTATAAA
26146468 TAAAATAATAATCTTATAAA
1 TAAAATAATAATCTTATAAA
26146488 TAAA
1 TAAA
26146492 CCAATTTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:26147634 original size:20 final size:19
Alignment explanation
Indices: 26147609--26147654 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
26147599 CGGATATAAA
26147609 TTAAAAAAATAAAAAATATT
1 TTAAAAAAATAAAAAA-ATT
* **
26147629 TTAAAAATATAAACTAATT
1 TTAAAAAAATAAAAAAATT
26147648 TTAAAAA
1 TTAAAAA
26147655 GTATACTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAAAAATAAAAAAATT
Found at i:26147636 original size:18 final size:19
Alignment explanation
Indices: 26147613--26147654 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
26147603 TATAAATTAA
26147613 AAAAATAAAAAAT-ATTTT
1 AAAAATAAAAAATAATTTT
* *
26147631 AAAAATATAAACTAATTTT
1 AAAAATAAAAAATAATTTT
26147650 AAAAA
1 AAAAA
26147655 GTATACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATAAAAAATAATTTT
Found at i:26147648 original size:19 final size:18
Alignment explanation
Indices: 26147613--26147659 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
26147603 TATAAATTAA
*
26147613 AAAAATAAAAAATATTTT
1 AAAAATATAAAATATTTT
*
26147631 AAAAATATAAACTAATTTT
1 AAAAATATAAAAT-ATTTT
26147650 AAAAAGTATA
1 AAAAA-TATA
26147660 CTTTTTGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 11 0.44
19 10 0.40
20 4 0.16
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAAATATAAAATATTTT
Found at i:26147698 original size:31 final size:32
Alignment explanation
Indices: 26147658--26147734 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 32
26147648 TTAAAAAGTA
*
26147658 TACTTTTTGGACAAGTTTC-GGTAC-AACTAGG
1 TACTTTTTGGACAAG-TTCAAGTACAAACTAGG
*
26147689 TGCTTTTTGGACAAGTTCAAGTACAAACTAGG
1 TACTTTTTGGACAAGTTCAAGTACAAACTAGG
26147721 TAC-TTTTGGACAAG
1 TACTTTTTGGACAAG
26147735 CTTAGGATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
30 3 0.07
31 29 0.71
32 9 0.22
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (32 bp):
TACTTTTTGGACAAGTTCAAGTACAAACTAGG
Found at i:26153022 original size:12 final size:12
Alignment explanation
Indices: 26153005--26153029 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26152995 AAGTGATAAT
26153005 GACGACGATGAC
1 GACGACGATGAC
26153017 GACGACGATGAC
1 GACGACGATGAC
26153029 G
1 G
26153030 GTGAATCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.36, T:0.08
Consensus pattern (12 bp):
GACGACGATGAC
Found at i:26154248 original size:59 final size:59
Alignment explanation
Indices: 26154167--26154283 Score: 189
Period size: 59 Copynumber: 2.0 Consensus size: 59
26154157 CTTGCAGTTT
* *
26154167 CTGTGGCAGCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTTA
1 CTGTAGCACCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTTA
* * *
26154226 CTGTAGCACCTGATATTCATTTCTTCTGTGTCAGCTCCCTTCTTAGTAAGTTACTCTT
1 CTGTAGCACCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTT
26154284 TAATTAAGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (59 bp):
CTGTAGCACCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTTA
Found at i:26158360 original size:74 final size:74
Alignment explanation
Indices: 26158237--26158387 Score: 194
Period size: 74 Copynumber: 2.0 Consensus size: 74
26158227 TAGTAGACAT
* * * * *
26158237 AATTACTGTGGCATTTTCGACAATATAGTGTTATCTTATACTTTATGCTGAAAGATTTTTATAAT
1 AATTACTGTGGCATTTTCGACAAGATAGCGTCATCTTATACTTTATGCTGAAAGATTCTTAGAAT
26158302 TTGTTTTCA
66 TTGTTTTCA
* * * * ** *
26158311 AATTAGTGTGGCATTTTCTACAAGATTGCGTCATCTTGTGTTTTGTGCTGAAAGATTCTTAGAAT
1 AATTACTGTGGCATTTTCGACAAGATAGCGTCATCTTATACTTTATGCTGAAAGATTCTTAGAAT
26158376 TTGTTTTCA
66 TTGTTTTCA
26158385 AAT
1 AAT
26158388 GTTTTTACCA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (74 bp):
AATTACTGTGGCATTTTCGACAAGATAGCGTCATCTTATACTTTATGCTGAAAGATTCTTAGAAT
TTGTTTTCA
Found at i:26162109 original size:38 final size:38
Alignment explanation
Indices: 26162066--26162141 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
26162056 TGCTAAATAA
* *
26162066 GCATTGAATATGCTAAATTTTAGATAAATATATACAAC
1 GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
26162104 GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
1 GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
26162142 TGGCTAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (38 bp):
GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
Found at i:26162466 original size:5 final size:5
Alignment explanation
Indices: 26162456--26162484 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
26162446 AATATTTTAA
26162456 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
26162485 AATTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:26165776 original size:30 final size:30
Alignment explanation
Indices: 26165740--26165801 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
26165730 TGCAACAGGA
* *
26165740 GGTGGGTTTGCT-GGTTTGGGTTCAGGTGGT
1 GGTGGGTTTGCTGGGGTT-GCTTCAGGTGGT
*
26165770 GGTGGGTTTTCTGGGGTTGCTTCAGGTGGT
1 GGTGGGTTTGCTGGGGTTGCTTCAGGTGGT
26165800 GG
1 GG
26165802 ATTTGGTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.03, C:0.08, G:0.50, T:0.39
Consensus pattern (30 bp):
GGTGGGTTTGCTGGGGTTGCTTCAGGTGGT
Found at i:26170880 original size:25 final size:25
Alignment explanation
Indices: 26170846--26170932 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 25
26170836 ACAAGCTGTA
*
26170846 AACGTTAAGCTCCTTCGAGCTGAAT
1 AACGGTAAGCTCCTTCGAGCTGAAT
*
26170871 AACGGTAAGCTCC-TCTAAGCTGAAT
1 AACGGTAAGCTCCTTC-GAGCTGAAT
* * * *
26170896 AACAGTAAGCTCATACGAGCTGAGT
1 AACGGTAAGCTCCTTCGAGCTGAAT
26170921 ATA-GGTAAGCTC
1 A-ACGGTAAGCTC
26170933 ATAAAAGCTA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.04
25 47 0.92
26 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
AACGGTAAGCTCCTTCGAGCTGAAT
Found at i:26170941 original size:50 final size:49
Alignment explanation
Indices: 26170830--26170945 Score: 112
Period size: 50 Copynumber: 2.4 Consensus size: 49
26170820 GTACATGTAT
* * * *
26170830 GCTCATACAAGCTGTAAACGTTAAGCTCCTTCGAGCTGAATAACGGTAA
1 GCTCATAAAAGCTGAAAACGTTAAGCTCATACGAGCTGAATAACGGTAA
* ** *
26170879 GCTCCTCTAAGCTGAATAACAG-TAAGCTCATACGAGCTGAGTATA-GGTAA
1 GCTCATAAAAGCTGAA-AAC-GTTAAGCTCATACGAGCTGAATA-ACGGTAA
26170929 GCTCATAAAAGCT-AAAA
1 GCTCATAAAAGCTGAAAA
26170946 TCGGTAACCC
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
48 2 0.04
49 14 0.26
50 36 0.67
51 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (49 bp):
GCTCATAAAAGCTGAAAACGTTAAGCTCATACGAGCTGAATAACGGTAA
Found at i:26175948 original size:29 final size:29
Alignment explanation
Indices: 26175874--26175948 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
26175864 CCATACGACC
*
26175874 GTGTGCTAGATTGTGTGAGCGACACGGGA
1 GTGTGCTAGGTTGTGTGAGCGACACGGGA
* ** *
26175903 GTGCG-TCAGGTCATGTGGGTC-ACACGGGA
1 GTGTGCT-AGGTTGTGTGAG-CGACACGGGA
26175932 GTGTGCTAGGTTGTGTG
1 GTGTGCTAGGTTGTGTG
26175949 CCAGGCCTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
28 1 0.03
29 32 0.91
30 2 0.06
ACGTcount: A:0.16, C:0.15, G:0.43, T:0.27
Consensus pattern (29 bp):
GTGTGCTAGGTTGTGTGAGCGACACGGGA
Found at i:26181216 original size:42 final size:43
Alignment explanation
Indices: 26181169--26181272 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
26181159 TTCCGAGGAG
* * *
26181169 TGATTTCATGTAAGAGCATGTCTGGGACATTGGCATCG-TATA
1 TGATTTCATGTAAGACCATGCCTGGGACAATGGCATCGATATA
* * * *
26181211 TGATTTCGTATAAGACCTTGCCTGGGATAATGGCATCGATATA
1 TGATTTCATGTAAGACCATGCCTGGGACAATGGCATCGATATA
* **
26181254 TTATAACATGTAAGACCAT
1 TGATTTCATGTAAGACCAT
26181273 ATTTGGGATA
Statistics
Matches: 48, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
42 31 0.65
43 17 0.35
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGCCTGGGACAATGGCATCGATATA
Found at i:26186054 original size:54 final size:54
Alignment explanation
Indices: 26185931--26186054 Score: 169
Period size: 54 Copynumber: 2.3 Consensus size: 54
26185921 TGGCCACGGC
* * * * *
26185931 AAGAAGACCTCGTAGTGTAAGACCTAGTCTAGGACTATGGCATCGTATGGGGAT
1 AAGAAGACCACATAGTGTAAGACCTAGTCTAGGACTATCGCATCATATGAGGAT
* *
26185985 ACGAAGACCATATAGTGTAAGACCTAGTCTAGGACTATCGCATCATATGAGGAT
1 AAGAAGACCACATAGTGTAAGACCTAGTCTAGGACTATCGCATCATATGAGGAT
26186039 AAG-AGAACCACATAGT
1 AAGAAG-ACCACATAGT
26186055 TTACCTCACT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
53 2 0.03
54 58 0.97
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGAAGACCACATAGTGTAAGACCTAGTCTAGGACTATCGCATCATATGAGGAT
Found at i:26186193 original size:18 final size:20
Alignment explanation
Indices: 26186170--26186208 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26186160 ATATGCATAC
*
26186170 AGAGG-AAGGATGAA-AGAA
1 AGAGGAAAGCATGAAGAGAA
26186188 AGAGGAAAGCATGAAGAGAA
1 AGAGGAAAGCATGAAGAGAA
26186208 A
1 A
26186209 TCTATATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.56, C:0.03, G:0.36, T:0.05
Consensus pattern (20 bp):
AGAGGAAAGCATGAAGAGAA
Found at i:26198660 original size:30 final size:30
Alignment explanation
Indices: 26198624--26198681 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
26198614 AACGACTAGC
*
26198624 ACACACAATCAATGAGACGGTAGAATTAGT
1 ACACACAATCAATAAGACGGTAGAATTAGT
26198654 ACACACAATCAATAAGACGGTAGAATTA
1 ACACACAATCAATAAGACGGTAGAATTA
26198682 TGTCCATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (30 bp):
ACACACAATCAATAAGACGGTAGAATTAGT
Found at i:26200556 original size:46 final size:46
Alignment explanation
Indices: 26200503--26200597 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 46
26200493 ATTTAATTTC
* **
26200503 ATTAGTTAACATTTCAATAGTCGTATAAACACATCATTTCTGAGCA
1 ATTAGTTAACATTTCAATAGTCATATAAACACATCATTTCCAAGCA
*
26200549 ATTAGTTAACATTTTAATAGTCATATAAACACATCATTTCCAAGCA
1 ATTAGTTAACATTTCAATAGTCATATAAACACATCATTTCCAAGCA
26200595 ATT
1 ATT
26200598 CAGGAAGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (46 bp):
ATTAGTTAACATTTCAATAGTCATATAAACACATCATTTCCAAGCA
Found at i:26200731 original size:20 final size:20
Alignment explanation
Indices: 26200708--26200747 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26200698 TAGTGCTATT
* *
26200708 AGAGGCATCGTAGTGCAAAC
1 AGAGGCAACGAAGTGCAAAC
26200728 AGAGGCAACGAAGTGCAAAC
1 AGAGGCAACGAAGTGCAAAC
26200748 CCGTACAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.30, T:0.10
Consensus pattern (20 bp):
AGAGGCAACGAAGTGCAAAC
Found at i:26202819 original size:43 final size:42
Alignment explanation
Indices: 26202748--26203105 Score: 332
Period size: 43 Copynumber: 8.3 Consensus size: 42
26202738 AGCGCCGCAA
*
26202748 AAAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTTCC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCC
* * * *
26202790 GAAAACGCCGCTATAGATAAAGACTTTTAGCGGTGC-TTTCCC
1 -AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCC
*
26202832 ACAAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTT-C
1 A-AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCC
* * * *****
26202874 ACAAACGCTGCTATAGATTAGGACCTTTAGCGGCGCAACCACAC
1 A-AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTC-C
* *
26202918 AAAACGCCGCTATAGATCAAGACCTTTAGTGACGCTTTTTCAC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTC-C
* * * **
26202961 AAAACACCGCTATAGATCAGGACTTTTAGCGGCG-TTTGTGGAAC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT-T--TCC
*
26203005 AAACGCACGCCGCTATAGATAAAGACCTTTAGCGGCGCTTTTTCCC
1 AAA---ACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTT-CC
26203051 ACAAACGCCGCTATAGA--ATAGACCTTTAGCGGCGC-TTTTCAC
1 A-AAACGCCGCTATAGATCA-AGACCTTTAGCGGCGCTTTTTC-C
26203093 ACAAACGCCGCTA
1 A-AAACGCCGCTA
26203106 AAAACATATC
Statistics
Matches: 260, Mismatches: 40, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.01
42 92 0.35
43 112 0.43
44 19 0.07
46 2 0.01
47 30 0.12
48 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCC
Found at i:26202923 original size:85 final size:86
Alignment explanation
Indices: 26202748--26203105 Score: 379
Period size: 85 Copynumber: 4.1 Consensus size: 86
26202738 AGCGCCGCAA
* * *
26202748 AAAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTTC-CGAAAACGCCGCTATAGATAAAG
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC-AAAACGCCGCTATAGATTAGG
* * *
26202812 ACTTTTAGCGGTGCTTTCC-CAC
65 ACCTTTAGCGGCGC-ATCCACAC
* *
26202834 -AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCAC-AAACGCTGCTATAGATTAGGA
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCACAAAACGCCGCTATAGATTAGGA
*
26202897 CCTTTAGCGGCGCAACCACAC
66 CCTTTAGCGGCGCATCCACAC
* * * *
26202918 AAAACGCCGCTATAGATCAAGACCTTTAGTGACGCTTTTTCACAAAACACCGCTATAGATCAGGA
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCACAAAACGCCGCTATAGATTAGGA
* ** **
26202983 CTTTTAGCGGCGTTTGTGGA-AC
66 CCTTTAGCGGCG--CATCCACAC
* * *
26203005 AAACGCACGCCGCTATAGATAAAGACCTTTAGCGGCGCTTTTTCCCACAAACGCCGCTATAGAAT
1 AAA---ACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCACA-AAACGCCGCTATAGATT
* *
26203070 A-GACCTTTAGCGGCGCTTTTCACAC
62 AGGACCTTTAGCGGCGC-ATCCACAC
26203095 -AAACGCCGCTA
1 AAAACGCCGCTA
26203106 AAAACATATC
Statistics
Matches: 228, Mismatches: 32, Indels: 24
0.80 0.11 0.08
Matches are distributed among these distances:
83 2 0.01
84 32 0.14
85 78 0.34
86 39 0.17
87 5 0.02
88 1 0.00
89 4 0.02
90 52 0.23
91 15 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (86 bp):
AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCACAAAACGCCGCTATAGATTAGGA
CCTTTAGCGGCGCATCCACAC
Found at i:26203443 original size:25 final size:25
Alignment explanation
Indices: 26203393--26203443 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26203383 AAATGCATTT
* * *
26203393 TAATGCATTTTCTTAATCAAATAAA
1 TAATACATTTACTTAATCAAAGAAA
*
26203418 TAATACATTTACTTAATCAAGGAAA
1 TAATACATTTACTTAATCAAAGAAA
26203443 T
1 T
26203444 TTTGTACATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (25 bp):
TAATACATTTACTTAATCAAAGAAA
Found at i:26204198 original size:23 final size:23
Alignment explanation
Indices: 26204168--26204230 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
26204158 AGGAAAAAGG
*
26204168 TAATTTAGATTTATACCTGATTA
1 TAATTTAGATTTATACCTGACTA
*
26204191 TAATTTAGATTTATACCTGCCTA
1 TAATTTAGATTTATACCTGACTA
26204214 TAATTTAGATTTATACC
1 TAATTTAGATTTATACC
26204231 GTAGGGAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (23 bp):
TAATTTAGATTTATACCTGACTA
Found at i:26208284 original size:21 final size:21
Alignment explanation
Indices: 26208260--26208302 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
26208250 ATAGTTACCT
26208260 ATCCATAACC-CTTAACCCCTA
1 ATCCATAACCTC-TAACCCCTA
*
26208281 ATCCTTAACCTCTAACCCCTA
1 ATCCATAACCTCTAACCCCTA
26208302 A
1 A
26208303 CCCCTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.26
Consensus pattern (21 bp):
ATCCATAACCTCTAACCCCTA
Found at i:26208288 original size:14 final size:14
Alignment explanation
Indices: 26208265--26208307 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
26208255 TACCTATCCA
26208265 TAACCCTTAACCCC
1 TAACCCTTAACCCC
* *
26208279 TAATCCTTAACCTC
1 TAACCCTTAACCCC
*
26208293 TAACCCCTAACCCC
1 TAACCCTTAACCCC
26208307 T
1 T
26208308 CTTTTACAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.26
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:26208306 original size:7 final size:7
Alignment explanation
Indices: 26208265--26208307 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
26208255 TACCTATCCA
*
26208265 TAACCCT
1 TAACCCC
26208272 TAACCCC
1 TAACCCC
* *
26208279 TAATCCT
1 TAACCCC
*
26208286 TAACCTC
1 TAACCCC
26208293 TAACCCC
1 TAACCCC
26208300 TAACCCC
1 TAACCCC
26208307 T
1 T
26208308 CTTTTACAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.26
Consensus pattern (7 bp):
TAACCCC
Found at i:26209517 original size:30 final size:30
Alignment explanation
Indices: 26209473--26209592 Score: 89
Period size: 30 Copynumber: 4.0 Consensus size: 30
26209463 GACAGCCAAT
* *
26209473 GACTTCTATCGGACGTAATAGGTAGTCATC
1 GACTTCTGTTGGACGTAATAGGTAGTCATC
* * * *
26209503 GACTTTTGTTGGACGCAATCGGTAGCCATC
1 GACTTCTGTTGGACGTAATAGGTAGTCATC
* *** * * *
26209533 GGCTTCTAACGGACATAGTCA-GCAGTCATC
1 GACTTCTGTTGGACGTAAT-AGGTAGTCATC
* *
26209563 GACTTCTGTTGGACGTAATCGATAGTCATC
1 GACTTCTGTTGGACGTAATAGGTAGTCATC
26209593 ATCTTCTATT
Statistics
Matches: 62, Mismatches: 26, Indels: 4
0.67 0.28 0.04
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (30 bp):
GACTTCTGTTGGACGTAATAGGTAGTCATC
Found at i:26213786 original size:51 final size:51
Alignment explanation
Indices: 26213707--26214047 Score: 257
Period size: 51 Copynumber: 6.7 Consensus size: 51
26213697 ATACCTGGTT
* *
26213707 CACATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
* * * *** * *
26213758 CACGTAGCAGCCTGCACATAGTACTACACATGTGATCGAAGCT-ATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATTTTCATCCGATA
* * *
26213809 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATA
* * *
26213859 CACATAGTAGCCTACATATAGTACTACACAAGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
* * * * * * *** * *
26213910 CACGTAGTAGTCAGCACATAGTACTGCACACGTGATCA-AAGCTATTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTC-ATCCGATA
* ** * * *
26213961 -AGCATAGTAGCTTGCACATAGTACTACACATGCAACC--TATCATTCTGTTA
1 CA-CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATA
* *
26214011 CACGA-AGTAGCCTACACATAGTACTACACACGTGACC
1 CAC-ATAGTAGCCTGCACATAGTACTACACATGTGACC
26214048 TAGCAACTTC
Statistics
Matches: 225, Mismatches: 55, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
48 1 0.00
49 2 0.01
50 74 0.33
51 141 0.63
52 7 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
Found at i:26213918 original size:101 final size:101
Alignment explanation
Indices: 26213707--26213939 Score: 245
Period size: 101 Copynumber: 2.3 Consensus size: 101
26213697 ATACCTGGTT
* * * * * *
26213707 CACATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCTGATACACGTAGCAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TATCATCCGATACACATAGCAGCCTA
* * * *
26213772 CACATAGTACTACACATGTGATCGAAGCTATCTGGTA
65 CACATAGTACTACACAAGTGATCCAAGCTATCCGATA
* *
26213809 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGATACACATAGTAGCCTA
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCATATCA-TCCGATACACATAGCAGCCTA
* ***
26213873 CATATAGTACTACACAAGTGA-CCATTTTCATCCGATA
65 CACATAGTACTACACAAGTGATCCAAGCT-ATCCGATA
* * * *
26213910 CACGTAGTAGTCAGCACATAGTACTGCACA
1 CACATAGTAGCCTGCACATAGTACTACACA
26213940 CGTGATCAAA
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
100 7 0.06
101 67 0.62
102 34 0.31
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGTACTACACATGCGACCATATCATCCGATACACATAGCAGCCTAC
ACATAGTACTACACAAGTGATCCAAGCTATCCGATA
Found at i:26213983 original size:152 final size:152
Alignment explanation
Indices: 26213707--26214047 Score: 506
Period size: 152 Copynumber: 2.2 Consensus size: 152
26213697 ATACCTGGTT
* * * *
26213707 CACATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCTGATACACGTAGCAGCCTG
1 CACATAGTAGCCTACATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGCAGCCAG
* * *
26213772 CACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCCTGCACATAGTACTACA
66 CACATAGTACTACACACGTGATCAAAGCTATCTGGTAAGCATAGTAGCCTGCACATAGTACTACA
*
26213837 CATGCGACCTATCATTCCGATA
131 CATGCAACCTATCATTCCGATA
* *
26213859 CACATAGTAGCCTACATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGTAGTCAG
1 CACATAGTAGCCTACATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGCAGCCAG
* *
26213924 CACATAGTACTGCACACGTGATCAAAGCTAT-TCGGTAAGCATAGTAGCTTGCACATAGTACTAC
66 CACATAGTACTACACACGTGATCAAAGCTATCT-GGTAAGCATAGTAGCCTGCACATAGTACTAC
* *
26213988 ACATGCAACCTATCATTCTGTTA
130 ACATGCAACCTATCATTCCGATA
* *
26214011 CACGA-AGTAGCCTACACATAGTACTACACACGTGACC
1 CAC-ATAGTAGCCTACATATAGTACTACACAAGTGACC
26214048 TAGCAACTTC
Statistics
Matches: 171, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
151 1 0.01
152 169 0.99
153 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (152 bp):
CACATAGTAGCCTACATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGCAGCCAG
CACATAGTACTACACACGTGATCAAAGCTATCTGGTAAGCATAGTAGCCTGCACATAGTACTACA
CATGCAACCTATCATTCCGATA
Found at i:26216837 original size:42 final size:42
Alignment explanation
Indices: 26216757--26216838 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
26216747 TGTGTTCTCT
* **
26216757 ATGCCATAGTCCATTTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCATCTATGGTCTTACACATATGCACATATTG
26216799 ATGCCATAG-CCTATCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGTCC-ATCTATGGTCTTACACA-TATGCACATAT
26216839 CACACCGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.06
42 31 0.89
43 2 0.06
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (42 bp):
ATGCCATAGTCCATCTATGGTCTTACACATATGCACATATTG
Found at i:26219637 original size:51 final size:50
Alignment explanation
Indices: 26219539--26219829 Score: 260
Period size: 51 Copynumber: 5.7 Consensus size: 50
26219529 ATACCCGGTT
* * * *
26219539 CACATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCT-ATCCGATA
** * * * *
26219590 CACGGAGCAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAATCTATCCGATA
** * * *
26219641 CGTATAGTAGCCTGCACATAGTACTACACATGCGACCTATC-ATTCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCTA-TCCGATA
* * * * *
26219691 CACATAGTAACCTGTACATAGTACTACACATGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCT-ATCCGATA
** * ** * * *
26219742 CACGGAGCAGCCTGCACATAGTACTACACACGTGATTGAAGCTATTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAATCTATCCGATA
**
26219793 TGCATAGTAGCCTGCACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
26219830 TAGCAACTTC
Statistics
Matches: 186, Mismatches: 49, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
49 1 0.01
50 42 0.23
51 137 0.74
52 6 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCTATCCGATA
Found at i:26219663 original size:102 final size:101
Alignment explanation
Indices: 26219542--26219725 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 101
26219532 CCCGGTTCAC
* * * * *
26219542 ATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCA-TCCGATACACGGAGCAGCCTGCA
1 ATAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGATACACAGAGCAACCTGCA
26219606 CATAGTACTACACACGTGATCGAAGCTATCCGGTACGT
64 CATAGTACTACACACGTGATCGAAGCTATCCGGTACGT
* * *
26219644 ATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGATACACATAGTAACCTGTACA
1 ATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGATACACAGAGCAACCTGCACA
*
26219709 TAGTACTACACATGTGA
66 TAGTACTACACACGTGA
26219726 CCATTTTCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 4 0.06
101 36 0.50
102 32 0.44
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
ATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGATACACAGAGCAACCTGCACA
TAGTACTACACACGTGATCGAAGCTATCCGGTACGT
Found at i:26219815 original size:152 final size:152
Alignment explanation
Indices: 26219539--26219831 Score: 505
Period size: 152 Copynumber: 1.9 Consensus size: 152
26219529 ATACCCGGTT
* *
26219539 CACATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCCGATACACGGAGCAGCCTG
1 CACATAGTAACCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGGAGCAGCCTG
*
26219604 CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGTATAGTAGCCTGCACATAGTACTACA
66 CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACA
*
26219669 CATGCGACCTATCATTCCGATA
131 CACGCGACCTATCATTCCGATA
*
26219691 CACATAGTAACCTGTACATAGTACTACACATGTGACCATTTTCATCCGATACACGGAGCAGCCTG
1 CACATAGTAACCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGGAGCAGCCTG
* * *
26219756 CACATAGTACTACACACGTGATTGAAGCTATTCGGTATGCATAGTAGCCTGCACATAGTACTACA
66 CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACA
*
26219821 CACGTGACCTA
131 CACGCGACCTA
26219832 GCAACTTCAC
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
152 132 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (152 bp):
CACATAGTAACCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGGAGCAGCCTG
CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACA
CACGCGACCTATCATTCCGATA
Found at i:26234819 original size:21 final size:21
Alignment explanation
Indices: 26234795--26234834 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26234785 TCACATGGCT
* *
26234795 ATGTATCTCTATCACACGGGC
1 ATGTATCTCCACCACACGGGC
*
26234816 ATGTGTCTCCACCACACGG
1 ATGTATCTCCACCACACGG
26234835 CCGTGTGCCG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.25
Consensus pattern (21 bp):
ATGTATCTCCACCACACGGGC
Found at i:26264348 original size:6 final size:6
Alignment explanation
Indices: 26264337--26264364 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26264327 AAAAAGATGA
26264337 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
26264365 AGTGAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:26265748 original size:87 final size:87
Alignment explanation
Indices: 26265602--26266130 Score: 781
Period size: 87 Copynumber: 6.1 Consensus size: 87
26265592 AGATTAGTGA
* * * *
26265602 AGATCAAAAACAAAACCTTGCCTCCATCAGTTGCAGTGAAGCTGGTTGAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
26265667 CTTCCTGTGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
26265689 AGATCGAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
26265754 CTTCCTACGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
26265776 CGATCAAAAACAAAGCCTTGCTTCCATCGGTTGCGGTGGAGCTGGTTGAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
**
26265841 CTTCCTGCGTTAACAGCGAAAT
66 CTTCCTGCGTTAACAGCGAAGC
*
26265863 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTTGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
26265928 CTTCCTGTGTTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
26265950 AGATCGAAAGCAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTTGGTTAAAGATAGCAGATCTTAC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
26266015 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
26266037 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTG-AGTGGAGCTAGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* ** *
26266101 CCTCCTGCGTCGACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
26266123 AGATCAAA
1 AGATCAAA
26266131 GATTACAAGT
Statistics
Matches: 398, Mismatches: 44, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
86 53 0.13
87 345 0.87
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (87 bp):
AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:26266214 original size:261 final size:261
Alignment explanation
Indices: 26265650--26266196 Score: 607
Period size: 261 Copynumber: 2.1 Consensus size: 261
26265640 AAGCTGGTTG
* * * * * * *
26265650 AAGATAGCAGATCTTGCCTTCCTGTGTTAACAGCGAAGCAGATCGAAAATAAAGCCTTGCCTCCA
1 AAGAAAGCAGATCCTACCTCCCTGAGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* * * * *
26265715 TCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAGCCGAT
66 TCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCTTCCTACGTTAACAGCGAAGCAGAT
* * * * *
26265780 CAAAAACAAAGCCTTGCTTCCATCGGTTGCGGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTC
131 CAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCCTC
* * * ** ** * ** **
26265845 CTGCGTTAACAGCGAAATAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTTGAGCTGGTT
196 CTGCGTCAACAGCGAAACAGATCAAAAACAAAGCCTTACCTCCATAAGCAGCAGTGGAGCAAGAC
26265910 A
261 A
* * * * * *
26265911 AAGATAGCAGATCTTGCCTTCCTGTGTTAACAACGAAGCAGATCGAAAGCAAAGCCTTGCCTCCA
1 AAGAAAGCAGATCCTACCTCCCTGAGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* *
26265976 TCGGTTGCAGTGGAGTTGGTTAAAGATAGCAGATCTTACCTTCCTGCGTTAACAGCGAAGCAGAT
66 TCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCTTCCTACGTTAACAGCGAAGCAGAT
*
26266041 CGAAAACAAAGCCTTGCCTCCATCGGTTG-AGTGGAGCTAGTTAAAGATAGCAGATCTTGCCCTC
131 CAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCCTC
* * * * * * *
26266105 CTGCGTCGACAGTGAAGCAGATCAAAGATTAC-AAGTCTTATCTCCCTAAGCAGTAGTGGAG-AA
196 CTGCGTCAACAGCGAAACAGATCAAA-A--ACAAAGCCTTACCTCCATAAGCAGCAGTGGAGCAA
26266168 GACA
258 GACA
* *
26266172 GAAGAAATCA-ATCCTATCTCCCTGA
1 -AAGAAAGCAGATCCTACCTCCCTGA
26266197 AGTTGCAGTG
Statistics
Matches: 240, Mismatches: 42, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
260 52 0.22
261 160 0.67
262 26 0.11
263 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (261 bp):
AAGAAAGCAGATCCTACCTCCCTGAGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
TCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCTTCCTACGTTAACAGCGAAGCAGAT
CAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCCTC
CTGCGTCAACAGCGAAACAGATCAAAAACAAAGCCTTACCTCCATAAGCAGCAGTGGAGCAAGAC
A
Found at i:26266254 original size:43 final size:44
Alignment explanation
Indices: 26266115--26266258 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 44
26266105 CTGCGTCGAC
* * *
26266115 AGTGAAGCAGATCA-AAG-ATTACAAGTCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATCAGAAGAAAT-CAA-TCTTATCTCCCTAAGTAGT
* * * *
26266159 AGTGGAGAAGA-CAGAAGAAATCAATCCTATCTCCCTGAAGTTGC
1 AGTGGAGCAGATCAGAAGAAATCAATCTTATCTCCCT-AAGTAGT
*
26266203 AGTGGAGCAGATTA-AA-ACAAT-AGATCTTATCTCCCTAAGTAGT
1 AGTGGAGCAGATCAGAAGA-AATCA-ATCTTATCTCCCTAAGTAGT
26266246 AGTGGAGCAGATC
1 AGTGGAGCAGATC
26266259 GCATCGGGTC
Statistics
Matches: 81, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
43 32 0.40
44 46 0.57
45 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (44 bp):
AGTGGAGCAGATCAGAAGAAATCAATCTTATCTCCCTAAGTAGT
Found at i:26268033 original size:104 final size:102
Alignment explanation
Indices: 26267895--26268093 Score: 301
Period size: 104 Copynumber: 1.9 Consensus size: 102
26267885 TACGAAGGGG
*
26267895 GTTGCTAAGTGCTGATTCCCTGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGA
1 GTTGCTAAGTGCTGATTCCCTGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTAT-CTT-A
* *
26267960 ATATAT-AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGA
64 A-ATATGAAAGGGGTTGCTAAGTGCTAATTCCCCCAAGGA
* **
26267999 GTTGCTAAGTGTTTTTTCCCTGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAA
1 GTTGCTAAGTGCTGATTCCCTGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAA
*
26268064 TGTGAAAGGGGTTGCTAAGTGCTAATTCCC
66 TATGAAAGGGGTTGCTAAGTGCTAATTCCC
26268094 TGAATTACTA
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
101 3 0.03
102 26 0.30
103 3 0.03
104 55 0.63
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (102 bp):
GTTGCTAAGTGCTGATTCCCTGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAA
TATGAAAGGGGTTGCTAAGTGCTAATTCCCCCAAGGA
Found at i:26268123 original size:75 final size:74
Alignment explanation
Indices: 26268029--26268195 Score: 264
Period size: 74 Copynumber: 2.2 Consensus size: 74
26268019 TGACTCATTG
26268029 GTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTAATTCCC
1 GTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG-AAGGGGTTGCTAAGTGCTAATTCCC
* *
26268094 TGAATTACTA
65 CGAATCACTA
*
26268104 GTGGTTGCTAAGT-CTTGATCCCACCGTATCTTAAATGTGAAGGGGTTGCTAAGTGCTGATTCCC
1 GTGGTTGCTAAGTGC-TGATCCCACCGTATCTTAAATGTGAAGGGGTTGCTAAGTGCTAATTCCC
*
26268168 CGAATCACTG
65 CGAATCACTA
*
26268178 GTCGTTGCTAAGTGCTGA
1 GTGGTTGCTAAGTGCTGA
26268196 ATCCACCAAT
Statistics
Matches: 85, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
74 47 0.55
75 38 0.45
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (74 bp):
GTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAGGGGTTGCTAAGTGCTAATTCCCC
GAATCACTA
Found at i:26268202 original size:74 final size:75
Alignment explanation
Indices: 26267994--26268195 Score: 282
Period size: 75 Copynumber: 2.7 Consensus size: 75
26267984 TGATTCCCCC
* * ** * *
26267994 AAGGAGTTGCTAAGTGTTTTTTCCCTGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTAATTCCCTGAATCACTGGTGGTTGCTAAGTGCTGATCCCACCGTATC
26268059 TTAAATGTGA
66 TTAAATGTGA
* *
26268069 AAGGGGTTGCTAAGTGCTAATTCCCTGAATTACTAGTGGTTGCTAAGT-CTTGATCCCACCGTAT
1 AAGGGGTTGCTAAGTGCTAATTCCCTGAATCACTGGTGGTTGCTAAGTGC-TGATCCCACCGTAT
26268133 CTTAAATGTG-
65 CTTAAATGTGA
* * *
26268143 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTCGTTGCTAAGTGCTGA
1 AAGGGGTTGCTAAGTGCTAATTCCCTGAATCACTGGTGGTTGCTAAGTGCTGA
26268196 ATCCACCAAT
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
74 47 0.42
75 65 0.58
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTAATTCCCTGAATCACTGGTGGTTGCTAAGTGCTGATCCCACCGTATC
TTAAATGTGA
Found at i:26274589 original size:74 final size:76
Alignment explanation
Indices: 26274381--26274586 Score: 319
Period size: 75 Copynumber: 2.8 Consensus size: 76
26274371 TGATTCCCCC
* *
26274381 AAGGGGTTGCTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCT-AATCCCACCGTAT
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCCACCGTAT
26274445 CTTAAATGTGA
66 CTTAAATGTGA
* *
26274456 AAGGGGTTGCTAAGTGTTGATTCCCCGAATTACTAGTGGTTGCTAAGTGCTG-ATCCCACCGTAT
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCCACCGTAT
26274520 CTTAAATGTG-
66 CTTAAATGTGA
* * **
26274530 AAGGGGTTGCCAAGTGCTGATTCCCCGAATCACTGGTCATTGCTAAGTGCTGAATCC
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCC
26274587 ACCAATAACG
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
74 46 0.39
75 73 0.61
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCCACCGTAT
CTTAAATGTGA
Found at i:26294899 original size:32 final size:32
Alignment explanation
Indices: 26294859--26295045 Score: 232
Period size: 32 Copynumber: 5.8 Consensus size: 32
26294849 ACATAAGTAC
* * *
26294859 AGTAATATGATTGGCACAAAGCCATCAGTAGT
1 AGTAATATGATCGACACAAAGCCATCAGTAAT
* * *
26294891 AATAATATGATCGGCACACAGCCATCAGTAAT
1 AGTAATATGATCGACACAAAGCCATCAGTAAT
* * *
26294923 AGTAGTATGATCGGCACAAAGCCATCAGTAGT
1 AGTAATATGATCGACACAAAGCCATCAGTAAT
26294955 AGTAATATGATCGACACACAA-CCATCAGTAAT
1 AGTAATATGATCGACACA-AAGCCATCAGTAAT
* * * *
26294987 GGTAATATGATCAACACACATCCATCAGTAAT
1 AGTAATATGATCGACACAAAGCCATCAGTAAT
*
26295019 GGTAATATGATCGACACAAAGCCATCA
1 AGTAATATGATCGACACAAAGCCATCA
26295046 ATAGCATCGC
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
31 1 0.01
32 133 0.98
33 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (32 bp):
AGTAATATGATCGACACAAAGCCATCAGTAAT
Found at i:26294965 original size:64 final size:64
Alignment explanation
Indices: 26294859--26295045 Score: 257
Period size: 64 Copynumber: 2.9 Consensus size: 64
26294849 ACATAAGTAC
* * *
26294859 AGTAATATGATTGGCACAAAGCCATCAGTAGTAATAATATGATCGGCACACAGCCATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
* *
26294923 AGTAGTATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAACCATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
* ** * * * * *
26294987 GGTAATATGATCAACACACATCCATCAGTAATGGTAATATGATCGACACAAAGCCATCA
1 AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCA
26295046 ATAGCATCGC
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 108 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (64 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
Found at i:26295028 original size:96 final size:96
Alignment explanation
Indices: 26294859--26295045 Score: 259
Period size: 96 Copynumber: 1.9 Consensus size: 96
26294849 ACATAAGTAC
* * * **
26294859 AGTAATATGATTGGCACAAAGCCATCAGTAGTAATAATATGATCGGCACACAGCCATCAGTAATA
1 AGTAATATGATCGACACAAAGCCATCAGTAATAATAATATGATCAACACACAGCCATCAGTAATA
* *
26294924 GTAGTATGATCGGCACAAAGCCATCAGTAGT
66 GTAATATGATCGACACAAAGCCATCAGTAGT
** *
26294955 AGTAATATGATCGACACACAA-CCATCAGTAATGGTAATATGATCAACACACATCCATCAGTAAT
1 AGTAATATGATCGACACA-AAGCCATCAGTAATAATAATATGATCAACACACAGCCATCAGTAAT
*
26295019 GGTAATATGATCGACACAAAGCCATCA
65 AGTAATATGATCGACACAAAGCCATCA
26295046 ATAGCATCGC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 77 0.97
97 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (96 bp):
AGTAATATGATCGACACAAAGCCATCAGTAATAATAATATGATCAACACACAGCCATCAGTAATA
GTAATATGATCGACACAAAGCCATCAGTAGT
Found at i:26295080 original size:26 final size:26
Alignment explanation
Indices: 26295051--26295104 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
26295041 CATCAATAGC
*
26295051 ATCGCAGCAAAGCTGCCAGCAACAGT
1 ATCGCAGCAAAGCTGCCAACAACAGT
*
26295077 ATCGCAGCAAAGCTGCCAATAACAGT
1 ATCGCAGCAAAGCTGCCAACAACAGT
26295103 AT
1 AT
26295105 ATGTAGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.37, C:0.28, G:0.20, T:0.15
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCCAACAACAGT
Found at i:26295271 original size:24 final size:24
Alignment explanation
Indices: 26295242--26295303 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
26295232 AAATCATAGA
*
26295242 CAAATCAATCATTTACATC-CCGG
1 CAAATCAATCATTTACATCACAGG
* *
26295265 ACGAATCATTCATTTACATCACAGG
1 -CAAATCAATCATTTACATCACAGG
26295290 CAAATCAATCATTT
1 CAAATCAATCATTT
26295304 CACCCCGAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 29 0.91
25 3 0.09
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (24 bp):
CAAATCAATCATTTACATCACAGG
Found at i:26295374 original size:27 final size:27
Alignment explanation
Indices: 26295322--26295503 Score: 121
Period size: 27 Copynumber: 6.8 Consensus size: 27
26295312 GGGGAAAAAT
* *
26295322 AGTCATTTTACCCTA-CAGAGGAATTAC
1 AGTCATTTTACCCTATC-GGGGCATTAC
26295349 AGTCATTTTACCCTATCGGGGCATTA-
1 AGTCATTTTACCCTATCGGGGCATTAC
* *
26295375 AGGTCATTTTACCCTA-CAAGGGCGTTAC
1 A-GTCATTTTACCCTATC-GGGGCATTAC
* * *
26295403 -GATCATTTAACCATATAGGGGCATTAC
1 AG-TCATTTTACCCTATCGGGGCATTAC
* *
26295430 AGTCATTTTACCCCTA--GAGGGTATTTC
1 AGTCATTTTA-CCCTATCG-GGGCATTAC
* *
26295457 AGTCATTTTACCCT-TCAGGGGTATTTC
1 AGTCATTTTACCCTATC-GGGGCATTAC
*
26295484 -GATAATTTTACCCT-TCGGGG
1 AG-TCATTTTACCCTATCGGGG
26295504 GTATTTCGAT
Statistics
Matches: 128, Mismatches: 14, Indels: 27
0.76 0.08 0.16
Matches are distributed among these distances:
26 13 0.10
27 108 0.84
28 7 0.05
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
AGTCATTTTACCCTATCGGGGCATTAC
Found at i:26295381 original size:54 final size:54
Alignment explanation
Indices: 26295322--26295470 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
26295312 GGGGAAAAAT
*
26295322 AGTCATTTTACCCTACAGAGGAATTACAGTCATTTTACCCTATCGGGGCATTA-
1 AGTCATTTTACCCTACAGAGGAATTACAGTCATTTTACCCTATAGGGGCATTAC
** * *
26295375 AGGTCATTTTACCCTACA-AGGGCGTTAC-GATCATTTAACCATATAGGGGCATTAC
1 A-GTCATTTTACCCTACAGA-GGAATTACAG-TCATTTTACCCTATAGGGGCATTAC
* * *
26295430 AGTCATTTTACCCCTAGAG-GGTATTTCAGTCATTTTACCCT
1 AGTCATTTTA-CCCTACAGAGGAATTACAGTCATTTTACCCT
26295471 TCAGGGGTAT
Statistics
Matches: 78, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
53 3 0.04
54 67 0.86
55 8 0.10
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (54 bp):
AGTCATTTTACCCTACAGAGGAATTACAGTCATTTTACCCTATAGGGGCATTAC
Done.