Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold235
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1667838
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 72548 characters in sequence are not A, C, G, or T
File 2 of 5
Found at i:427763 original size:17 final size:16
Alignment explanation
Indices: 427721--427763 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
427711 TTGTATTAAA
*
427721 AATATATATAAATCAT
1 AATATATATAAAGCAT
*
427737 AATCATATATAAGGCAT
1 AAT-ATATATAAAGCAT
427754 AATATCATAT
1 AATAT-ATAT
427764 TTAACCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.51, C:0.09, G:0.05, T:0.35
Consensus pattern (16 bp):
AATATATATAAAGCAT
Found at i:428551 original size:16 final size:16
Alignment explanation
Indices: 428532--428563 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
428522 ATTATTTACT
428532 ATCATAATAGTTTAAC
1 ATCATAATAGTTTAAC
428548 ATCATAATAGTTTAAC
1 ATCATAATAGTTTAAC
428564 CCAAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
ATCATAATAGTTTAAC
Found at i:430583 original size:44 final size:44
Alignment explanation
Indices: 430528--430620 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
430518 ATCTCAAGGT
* * *
430528 CCATTTTTATAACATGGCAATTAAGGAAGAATTGACTGAAAAGA
1 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
430572 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
1 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
*
430616 GCATG
1 CCATG
430621 GTTGGACCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (44 bp):
CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
Found at i:430632 original size:44 final size:44
Alignment explanation
Indices: 430538--430634 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
430528 CCATTTTTAT
* * * *
430538 AACATGGCAATTAAGGAAGAATTGACTGAAAAGACCATGTTTAT
1 AACATGGCAATTAAGAAAGAATTGACGGAAAAGACCATGGTTAG
* *
430582 AACATGGCAATTAAGAAAGAATTGACGGAAAAGAGCATGGTTGG
1 AACATGGCAATTAAGAAAGAATTGACGGAAAAGACCATGGTTAG
*
430626 ACCATGGCA
1 AACATGGCA
430635 GTAAGTGTGC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (44 bp):
AACATGGCAATTAAGAAAGAATTGACGGAAAAGACCATGGTTAG
Found at i:430701 original size:50 final size:50
Alignment explanation
Indices: 430641--430877 Score: 302
Period size: 50 Copynumber: 4.8 Consensus size: 50
430631 GGCAGTAAGT
430641 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATC-GAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CAGAGGA
* * * * *
430691 GTGCCGGTGTAAGACCATGTCTAGGACATGGCATCAGTACAGACGGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
* * *
430741 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGACAGAGAA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
* * * * * *
430791 GAGTCAGTGTAAGACCATGTTTGGGACATGACATCGGCTC-G--AGATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
*
430838 GTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
430878 CGATATGTGA
Statistics
Matches: 162, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
47 40 0.25
49 2 0.01
50 120 0.74
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (50 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
Found at i:433545 original size:32 final size:32
Alignment explanation
Indices: 433509--433572 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
433499 TTATTGTGGT
433509 ATGATATATAAAATATATATTATCTAACCACA
1 ATGATATATAAAATATATATTATCTAACCACA
433541 ATGATATATAAAATATATATTATCTAACCACA
1 ATGATATATAAAATATATATTATCTAACCACA
433573 TTATAATAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.34
Consensus pattern (32 bp):
ATGATATATAAAATATATATTATCTAACCACA
Found at i:437774 original size:32 final size:35
Alignment explanation
Indices: 437733--437799 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 35
437723 TATATTTTAA
*
437733 TTATATTTAATAATT-CAAATAAAAA-ATATTATT
1 TTATATTTAATAATTGCAAATAAAAATATAATATT
* *
437766 TTAT-TTTAATTATTGCAATTAAAAATATAATATT
1 TTATATTTAATAATTGCAAATAAAAATATAATATT
437800 AAAAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 9 0.31
33 13 0.45
34 7 0.24
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (35 bp):
TTATATTTAATAATTGCAAATAAAAATATAATATT
Found at i:438139 original size:18 final size:18
Alignment explanation
Indices: 438116--438151 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
438106 TACCAAGCGA
438116 CTTAGTGTGACGATCATG
1 CTTAGTGTGACGATCATG
438134 CTTAGTGTGACGATCATG
1 CTTAGTGTGACGATCATG
438152 TTTCTGCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (18 bp):
CTTAGTGTGACGATCATG
Found at i:441315 original size:51 final size:50
Alignment explanation
Indices: 441257--441436 Score: 177
Period size: 51 Copynumber: 3.6 Consensus size: 50
441247 GTTCACTTAT
* *
441257 TAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGATACACGTAG
* * * * * *
441308 TAGCCTGCACATAGTACTACACACGTGATCGA-AGCTATCTGGTACGCATAG
1 TAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGATACACGTAG
* * *
441359 TAGCCTGCACGTAGTACTACACATGCGACC-TATCATTCC-AGTACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGA-TACACGTAG
* *
441409 TAGCTTGCACATGGTACTACACACGTGA
1 TAGCCTGCACATAGTACTACACACGTGA
441437 TCTAGCAACT
Statistics
Matches: 102, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
49 1 0.01
50 36 0.35
51 63 0.62
52 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGCCTGCACATAGTACTACACACGTGACCATATCATCCGATACACGTAG
Found at i:464714 original size:9 final size:8
Alignment explanation
Indices: 464686--464756 Score: 67
Period size: 9 Copynumber: 8.5 Consensus size: 8
464676 ATTTTTTCCC
464686 TATTTAATT
1 TATTT-ATT
464695 TA-TT-TT
1 TATTTATT
464701 TATTTATT
1 TATTTATT
464709 TAATTTA-T
1 T-ATTTATT
464717 TATTTTATT
1 TA-TTTATT
464726 CTATTTATT
1 -TATTTATT
464735 TATTCTATT
1 TATT-TATT
464744 TATTTATCT
1 TATTTAT-T
464753 TATT
1 TATT
464757 CCTCTTCTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
6 4 0.07
7 3 0.06
8 18 0.33
9 27 0.50
10 2 0.04
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.70
Consensus pattern (8 bp):
TATTTATT
Found at i:464750 original size:13 final size:13
Alignment explanation
Indices: 464685--464750 Score: 73
Period size: 13 Copynumber: 4.9 Consensus size: 13
464675 GATTTTTTCC
464685 CTATTTAATTTATTT
1 CTATTT-ATTTA-TT
*
464700 TTATTTATTTAATT
1 CTATTTATTT-ATT
464714 -TA-TTATTTTATT
1 CTATTTA-TTTATT
464726 CTATTTATTTATT
1 CTATTTATTTATT
464739 CTATTTATTTAT
1 CTATTTATTTAT
464751 CTTATTCCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
12 6 0.13
13 25 0.54
14 9 0.20
15 6 0.13
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (13 bp):
CTATTTATTTATT
Found at i:464755 original size:5 final size:4
Alignment explanation
Indices: 464686--464756 Score: 67
Period size: 4 Copynumber: 17.0 Consensus size: 4
464676 ATTTTTTCCC
464686 TATT TAATT TA-T T-TT TATT TATT TAATT TA-T TATTT TATT CTATT
1 TATT T-ATT TATT TATT TATT TATT T-ATT TATT TA-TT TATT -TATT
464731 TATT TATT CTATT TATT TATCT TATT
1 TATT TATT -TATT TATT TAT-T TATT
464757 CCTCTTCTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 18
0.76 0.00 0.24
Matches are distributed among these distances:
3 7 0.12
4 28 0.48
5 23 0.40
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.70
Consensus pattern (4 bp):
TATT
Found at i:468736 original size:51 final size:51
Alignment explanation
Indices: 468673--468867 Score: 189
Period size: 51 Copynumber: 3.8 Consensus size: 51
468663 ATTATCATTC
* * * *
468673 GATACACGTAGTAGCCTTCACATAGTACTACACACATGACCATTAATATAT
1 GATACACATAGTAGCCTACACATAGTACTACACACGTGACCATTAATATCT
* *
468724 GATACACATAGTAGCCTACACATAGTACTACACACGTGATCGA--AGCTATCT
1 GATACACATAGTAGCCTACACATAGTACTACACACGTGA-CCATTA-ATATCT
* * * ** * * * * *
468775 GGTACGCATAGTATCCTGTACATAGTACTACACATGCGACCTTTCAT-TCC
1 GATACACATAGTAGCCTACACATAGTACTACACACGTGACCATTAATATCT
* *
468825 GGTACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 GATACACATAGTAGCCTACACATAGTACTACACACGTGACCAT
468868 CACTTTCACT
Statistics
Matches: 114, Mismatches: 26, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
50 39 0.34
51 73 0.64
52 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (51 bp):
GATACACATAGTAGCCTACACATAGTACTACACACGTGACCATTAATATCT
Found at i:473017 original size:47 final size:47
Alignment explanation
Indices: 472963--473056 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
472953 GAAAATTAAC
472963 CAATGAGATAAACAATATCCAAGAAAGAATCCACCTAGACTTCACGT
1 CAATGAGATAAACAATATCCAAGAAAGAATCCACCTAGACTTCACGT
473010 CAATGAGATAAACAATATCCAAGAAAGAATCCACCTAGACTTCACGT
1 CAATGAGATAAACAATATCCAAGAAAGAATCCACCTAGACTTCACGT
473057 TTTATTATGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.19
Consensus pattern (47 bp):
CAATGAGATAAACAATATCCAAGAAAGAATCCACCTAGACTTCACGT
Found at i:473190 original size:21 final size:19
Alignment explanation
Indices: 473141--473196 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 19
473131 AATTTTCGAG
473141 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
473160 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
473179 GATATATACAATCTTAGA
1 G--ATATACAATCTTAGA
473197 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 19 0.58
21 14 0.42
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:473232 original size:21 final size:23
Alignment explanation
Indices: 473188--473232 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
473178 TGATATATAC
*
473188 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
473211 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
473232 A
1 A
473233 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:473573 original size:15 final size:15
Alignment explanation
Indices: 473549--473604 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
473539 GTTTTTAGTC
473549 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
473563 TGTTATTATTATTTT
1 TATTATTATTAATTT
*
473578 TATTATTCTATTATATAT
1 TATTA-T-TATTA-ATTT
473596 TATTATTAT
1 TATTATTAT
473605 ACCTACATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 4 0.12
17 6 0.18
18 7 0.21
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:473580 original size:24 final size:24
Alignment explanation
Indices: 473551--473604 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
473541 TTTTAGTCTA
* *
473551 TTTTATTAATTTTGTTAT-TATTAT
1 TTTTATT-ATTCTATTATATATTAT
473575 TTTTATTATTCTATTATATATTAT
1 TTTTATTATTCTATTATATATTAT
*
473599 TATTAT
1 TTTTAT
473605 ACCTACATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTTATTATTCTATTATATATTAT
Found at i:473944 original size:5 final size:6
Alignment explanation
Indices: 473927--473957 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
473917 TTTATATGTA
473927 TATTTT TATTTT TATTTT TATTTTT TATTTT
1 TATTTT TATTTT TATTTT TA-TTTT TATTTT
473958 CACAAATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:473944 original size:12 final size:13
Alignment explanation
Indices: 473927--473957 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
473917 TTTATATGTA
473927 TATTTTTA-TTTT
1 TATTTTTATTTTT
473939 TATTTTTATTTTT
1 TATTTTTATTTTT
473952 TATTTT
1 TATTTT
473958 CACAAATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:478644 original size:24 final size:24
Alignment explanation
Indices: 478625--478678 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
478615 TAAAAATTAT
478625 TAAAATAAGAGAAAATAAAATAGAA
1 TAAAATAAGA-AAAATAAAATAGAA
*
478650 TAAAATAATAAAAATAAAATA-AA
1 TAAAATAAGAAAAATAAAATAGAA
478673 GTAAAA
1 -TAAAA
478679 GGGGAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 2 0.07
24 16 0.59
25 9 0.33
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (24 bp):
TAAAATAAGAAAAATAAAATAGAA
Found at i:478646 original size:5 final size:5
Alignment explanation
Indices: 478625--478678 Score: 56
Period size: 5 Copynumber: 11.0 Consensus size: 5
478615 TAAAAATTAT
* * * * *
478625 TAAAA TAAGA GAAAA TAAAA TAGAA TAAAA TAATA -AAAA TAAAA TAAAG
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
478674 TAAAA
1 TAAAA
478679 GGGGAAACTT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
4 3 0.08
5 35 0.92
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:480173 original size:17 final size:18
Alignment explanation
Indices: 480151--480184 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
480141 TAGTTTGAGT
480151 TCATCTTAG-TTAATAAC
1 TCATCTTAGATTAATAAC
480168 TCATCTTAGATTAATAA
1 TCATCTTAGATTAATAA
480185 ATGAGTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (18 bp):
TCATCTTAGATTAATAAC
Found at i:490033 original size:26 final size:26
Alignment explanation
Indices: 490003--490062 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
489993 GCAAGAGGCA
*
490003 AAGTTTGAGTGGAATACTACCGAAGG
1 AAGTTTGAGTGAAATACTACCGAAGG
490029 AAGTTTGAGTGAAATACTACCGAAGG
1 AAGTTTGAGTGAAATACTACCGAAGG
490055 AAGTTTGA
1 AAGTTTGA
490063 ACTGGTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (26 bp):
AAGTTTGAGTGAAATACTACCGAAGG
Found at i:490834 original size:26 final size:26
Alignment explanation
Indices: 490793--490965 Score: 143
Period size: 27 Copynumber: 6.5 Consensus size: 26
490783 CGGAAAGGTT
**
490793 GTAAAATTATTGAAATACCCTCGAGG
1 GTAAAATTACCGAAATACCCTCGAGG
* * *
490819 GTAAAATTATCAAAATACCCTCAAAGG
1 GTAAAATTACCGAAATACCCTC-GAGG
*
490846 GTAAAATTACCGAAATACCTTCGAAGG
1 GTAAAATTACCGAAATACCCTCG-AGG
*
490873 GTAAAATTACCCAAATACCC-CGAAAGG
1 GTAAAATTACCGAAATACCCTCG--AGG
* * *
490900 GTAAAATGACTGAAATACCCTCAATGG
1 GTAAAATTACCGAAATACCCTCGA-GG
* * *
490927 GTAAAATGACCGTAATGCCC-CTGTAGG
1 GTAAAATTACCGAAATACCCTC-G-AGG
*
490954 GTAAAATGACCG
1 GTAAAATTACCG
490966 TAAGGTCCTG
Statistics
Matches: 123, Mismatches: 17, Indels: 13
0.80 0.11 0.08
Matches are distributed among these distances:
26 24 0.20
27 97 0.79
28 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.21
Consensus pattern (26 bp):
GTAAAATTACCGAAATACCCTCGAGG
Found at i:490854 original size:27 final size:27
Alignment explanation
Indices: 490793--490938 Score: 161
Period size: 27 Copynumber: 5.4 Consensus size: 27
490783 CGGAAAGGTT
** *
490793 GTAAAATTATTGAAATACCCTC-GAGG
1 GTAAAATTACCGAAATACCCTCAAAGG
* *
490819 GTAAAATTATCAAAATACCCTCAAAGG
1 GTAAAATTACCGAAATACCCTCAAAGG
* *
490846 GTAAAATTACCGAAATACCTTCGAAGG
1 GTAAAATTACCGAAATACCCTCAAAGG
*
490873 GTAAAATTACCCAAATACCC-CGAAAGG
1 GTAAAATTACCGAAATACCCTC-AAAGG
* * *
490900 GTAAAATGACTGAAATACCCTCAATGG
1 GTAAAATTACCGAAATACCCTCAAAGG
*
490927 GTAAAATGACCG
1 GTAAAATTACCG
490939 TAATGCCCCT
Statistics
Matches: 102, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.21
27 80 0.78
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.21
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCAAAGG
Found at i:490889 original size:54 final size:54
Alignment explanation
Indices: 490793--490933 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 54
490783 CGGAAAGGTT
* *
490793 GTAAAATTATTGAAATACCCTCG-AGGGTAAAATTATCAAAATACCCTC-AAAGG
1 GTAAAATTACTGAAATACCCTCGAAGGGTAAAATTACCAAAATACCC-CGAAAGG
* * *
490846 GTAAAATTACCGAAATACCTTCGAAGGGTAAAATTACCCAAATACCCCGAAAGG
1 GTAAAATTACTGAAATACCCTCGAAGGGTAAAATTACCAAAATACCCCGAAAGG
*
490900 GTAAAATGACTGAAATACCCTC-AATGGGTAAAAT
1 GTAAAATTACTGAAATACCCTCGAA-GGGTAAAAT
490934 GACCGTAATG
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
53 23 0.30
54 54 0.70
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.22
Consensus pattern (54 bp):
GTAAAATTACTGAAATACCCTCGAAGGGTAAAATTACCAAAATACCCCGAAAGG
Found at i:490955 original size:54 final size:54
Alignment explanation
Indices: 490843--491061 Score: 162
Period size: 54 Copynumber: 4.3 Consensus size: 54
490833 ATACCCTCAA
* * * ** * *
490843 AGGGTAAAATTACCGAAATACCTTCGAA-GGGTAAAATTACCCAAATACCCC-GAA
1 AGGGTAAAATGACCGAAATACCCTC-AATGGGTAAAATGACCGTAATGCCCCTG-T
*
490897 AGGGTAAAATGACTGAAATACCCTCAATGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGAAATACCCTCAATGGGTAAAATGACCGTAATGCCCCTGT
*** * *
490951 AGGGTAAAATGACCG---TAAGGTC-CT--GT---AGGA---TAATGCCCCTGT
1 AGGGTAAAATGACCGAAATACCCTCAATGGGTAAAATGACCGTAATGCCCCTGT
* * *
490993 AGGGTAAAATGACCGTAATACCC-CTATAGGGTAAAATGACCGTAACGCCCCTGT
1 AGGGTAAAATGACCGAAATACCCTCAAT-GGGTAAAATGACCGTAATGCCCCTGT
491047 AGGGTAAAATGACCG
1 AGGGTAAAATGACCG
491062 TAATGCCCCT
Statistics
Matches: 130, Mismatches: 20, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
42 27 0.21
44 1 0.01
45 6 0.05
48 4 0.03
50 1 0.01
51 7 0.05
53 2 0.02
54 81 0.62
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (54 bp):
AGGGTAAAATGACCGAAATACCCTCAATGGGTAAAATGACCGTAATGCCCCTGT
Found at i:491098 original size:27 final size:27
Alignment explanation
Indices: 490981--491086 Score: 185
Period size: 27 Copynumber: 3.9 Consensus size: 27
490971 TCCTGTAGGA
490981 TAATGCCCCTGTAGGGTAAAATGACCG
1 TAATGCCCCTGTAGGGTAAAATGACCG
* *
491008 TAATACCCCTATAGGGTAAAATGACCG
1 TAATGCCCCTGTAGGGTAAAATGACCG
*
491035 TAACGCCCCTGTAGGGTAAAATGACCG
1 TAATGCCCCTGTAGGGTAAAATGACCG
491062 TAATGCCCCTGTAGGGTAAAATGAC
1 TAATGCCCCTGTAGGGTAAAATGAC
491087 TATTTTGCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.22
Consensus pattern (27 bp):
TAATGCCCCTGTAGGGTAAAATGACCG
Found at i:491140 original size:24 final size:24
Alignment explanation
Indices: 491105--491215 Score: 89
Period size: 24 Copynumber: 4.6 Consensus size: 24
491095 CCCTCGGGGT
* *
491105 TAAATGATTGATTTGCCTATGATG
1 TAAATGACTGATTTGCCTATGATC
* * *
491129 TAAATGAATGATTTGTCCGA-CATC
1 TAAATGACTGATTTG-CCTATGATC
** * *
491153 TAAATGACTGATTTGTTTGTGATT
1 TAAATGACTGATTTGCCTATGATC
* *
491177 TAAATGACTGATTTGTCTATGATT
1 TAAATGACTGATTTGCCTATGATC
**
491201 TGTATGACTGATTTG
1 TAAATGACTGATTTG
491216 TCTGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
24 67 0.96
25 3 0.04
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (24 bp):
TAAATGACTGATTTGCCTATGATC
Found at i:491177 original size:11 final size:11
Alignment explanation
Indices: 491161--491230 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
491151 TCTAAATGAC
*
491161 TGATTTGTTTG
1 TGATTTGTATG
**
491172 TGATTTAAATG
1 TGATTTGTATG
* *
491183 ACTGATTTGTCTA
1 --TGATTTGTATG
491196 TGATTTGTATG
1 TGATTTGTATG
*
491207 ACTGATTTGTCTG
1 --TGATTTGTATG
491220 TGATTTGTATG
1 TGATTTGTATG
491231 ACTGATTCCG
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
11 27 0.61
13 17 0.39
ACGTcount: A:0.20, C:0.06, G:0.23, T:0.51
Consensus pattern (11 bp):
TGATTTGTATG
Found at i:491216 original size:24 final size:24
Alignment explanation
Indices: 491156--491237 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
491146 CGACATCTAA
* **
491156 ATGACTGATTTGTTTGTGATTTAA
1 ATGACTGATTTGTCTGTGATTTGT
*
491180 ATGACTGATTTGTCTATGATTTGT
1 ATGACTGATTTGTCTGTGATTTGT
491204 ATGACTGATTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTGTGATTTGT
491228 ATGACTGATT
1 ATGACTGATT
491238 CCGTGCATGG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.49
Consensus pattern (24 bp):
ATGACTGATTTGTCTGTGATTTGT
Found at i:491391 original size:26 final size:26
Alignment explanation
Indices: 491353--491413 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
491343 TTGGCCACAT
* * * *
491353 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTATTGCTGGCAACTTCGCTGCG
491379 ATACTATTGCTGGCAACTTCGCTGCG
1 ATACTATTGCTGGCAACTTCGCTGCG
*
491405 ATGCTATTG
1 ATACTATTG
491414 AGGGCTTTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (26 bp):
ATACTATTGCTGGCAACTTCGCTGCG
Found at i:491468 original size:32 final size:32
Alignment explanation
Indices: 491427--491617 Score: 220
Period size: 32 Copynumber: 6.0 Consensus size: 32
491417 GCTTTGTATT
* *
491427 GATCATATTACCATTACTGATGGCTGTGTGCC
1 GATCATATTACTACTACTGATGGCTGTGTGCC
* *
491459 GATCATATTACTACTACTGATGGCTTTGTGTC
1 GATCATATTACTACTACTGATGGCTGTGTGCC
* * ** * *
491491 AATCATACTACTGTTACTGATGGTTGTGTGCT
1 GATCATATTACTACTACTGATGGCTGTGTGCC
* *
491523 GATCATATTACTACTACTGATGGCTTTGTGTC
1 GATCATATTACTACTACTGATGGCTGTGTGCC
* * ** *
491555 AATCATACTACTGTTACTGATGGTTGTGTGCC
1 GATCATATTACTACTACTGATGGCTGTGTGCC
*
491587 GATCATATTACTACTACTGATGGCTTTGTGC
1 GATCATATTACTACTACTGATGGCTGTGTGC
491618 AAATAATATT
Statistics
Matches: 126, Mismatches: 33, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 126 1.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (32 bp):
GATCATATTACTACTACTGATGGCTGTGTGCC
Found at i:491560 original size:96 final size:96
Alignment explanation
Indices: 491416--491643 Score: 237
Period size: 96 Copynumber: 2.4 Consensus size: 96
491406 TGCTATTGAG
** * * * * *
491416 GGCTTTGTATTGATCATATTACCATTACTGATGGCTGTGTGCCGATCATATTACTACTACTGATG
1 GGCTTTGTGCTGATCATATTACTACTACTGATGGCTTTGTGCCAATCATACTACTACTACTGATG
* **
491481 GCTT-TGTGTCAATCATACTACTGTTACTGAT
66 G-TTGTGTGCCAATCATACTACTACTACTGAT
* **
491512 GG-TTGTGTGCTGATCATATTACTACTACTGATGGCTTTGTGTCAATCATACTACTGTTACTGAT
1 GGCTT-TGTGCTGATCATATTACTACTACTGATGGCTTTGTGCCAATCATACTACTACTACTGAT
* *
491576 GGTTGTGTGCCGATCATATTACTACTACTGAT
65 GGTTGTGTGCCAATCATACTACTACTACTGAT
** * * *
491608 GGCTTTGTGCAAATAATATTACT-GTACTTATGGCTT
1 GGCTTTGTGCTGATCATATTACTACTACTGATGGCTT
491644 GTAGCAATTC
Statistics
Matches: 109, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
95 15 0.14
96 92 0.84
97 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (96 bp):
GGCTTTGTGCTGATCATATTACTACTACTGATGGCTTTGTGCCAATCATACTACTACTACTGATG
GTTGTGTGCCAATCATACTACTACTACTGAT
Found at i:491627 original size:32 final size:31
Alignment explanation
Indices: 491428--491651 Score: 204
Period size: 32 Copynumber: 7.1 Consensus size: 31
491418 CTTTGTATTG
* * * *
491428 ATCATATTACCATTACTGATGGCTGTGTGCCG
1 ATCATATTACTACTACTGATGGCTTTGTG-CA
491460 ATCATATTACTACTACTGATGGCTTTGTGTCA
1 ATCATATTACTACTACTGATGGCTTTGTG-CA
* ** *
491492 ATCATACTACTGTTACTGATGG-TTGTGTGCTG
1 ATCATATTACTACTACTGATGGCTT-TGTGC-A
491524 ATCATATTACTACTACTGATGGCTTTGTGTCA
1 ATCATATTACTACTACTGATGGCTTTGTG-CA
* ** *
491556 ATCATACTACTGTTACTGATGG-TTGTGTGCCG
1 ATCATATTACTACTACTGATGGCTT-TGTG-CA
491588 ATCATATTACTACTACTGATGGCTTTGTGCAA
1 ATCATATTACTACTACTGATGGCTTTGTGC-A
* * *
491620 ATAATATTACT-GTACTTATGGC-TTGTAGCA
1 ATCATATTACTACTACTGATGGCTTTGT-GCA
491650 AT
1 AT
491652 TCTGTTTATA
Statistics
Matches: 159, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
30 7 0.04
31 17 0.11
32 130 0.82
33 5 0.03
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (31 bp):
ATCATATTACTACTACTGATGGCTTTGTGCA
Found at i:491632 original size:64 final size:64
Alignment explanation
Indices: 491440--491616 Score: 336
Period size: 64 Copynumber: 2.8 Consensus size: 64
491430 CATATTACCA
*
491440 TTACTGATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGTCAATCATACTACTG
1 TTACTGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGTCAATCATACTACTG
*
491504 TTACTGATGGTTGTGTGCTGATCATATTACTACTACTGATGGCTTTGTGTCAATCATACTACTG
1 TTACTGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGTCAATCATACTACTG
491568 TTACTGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTG
1 TTACTGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTG
491617 CAAATAATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 110 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (64 bp):
TTACTGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGTCAATCATACTACTG
Found at i:491660 original size:22 final size:22
Alignment explanation
Indices: 491635--491686 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
491625 ATTACTGTAC
* *
491635 TTATGGCTTGTAGCAATTCTGT
1 TTATGGCTTATAGCAATCCTGT
* *
491657 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTTATAGCAATCCTGT
*
491679 TTACGGCT
1 TTATGGCT
491687 CTTATCCATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (22 bp):
TTATGGCTTATAGCAATCCTGT
Found at i:492272 original size:20 final size:20
Alignment explanation
Indices: 492249--492287 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
492239 CTCTATAAAG
492249 TTATAAAATTTAAATTGGGT
1 TTATAAAATTTAAATTGGGT
492269 TTATAAAATTTAAATTGGG
1 TTATAAAATTTAAATTGGG
492288 ATTTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (20 bp):
TTATAAAATTTAAATTGGGT
Found at i:503254 original size:14 final size:14
Alignment explanation
Indices: 503235--503263 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
503225 CATAAGACTT
503235 CTGCCTATCAGATG
1 CTGCCTATCAGATG
503249 CTGCCTATCAGATG
1 CTGCCTATCAGATG
503263 C
1 C
503264 CCAAGGTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (14 bp):
CTGCCTATCAGATG
Found at i:505585 original size:29 final size:27
Alignment explanation
Indices: 505514--505603 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 27
505504 CAGTAACAGT
*
505514 ATAGTGTGGACCTTAGCCAAATACAATA
1 ATAGTGTGGGCCTTAGCC-AATACAATA
505542 ATAGTGTGGGCCTTAGTCCAATACAATA
1 ATAGTGTGGGCCTTAG-CCAATACAATA
*** *
505570 ATAGTGTTTTTCCTTAGCCCAATACAGTA
1 ATAGTG-TGGGCCTTAG-CCAATACAATA
505599 ATAGT
1 ATAGT
505604 ACAGTGCAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
28 30 0.56
29 24 0.44
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (27 bp):
ATAGTGTGGGCCTTAGCCAATACAATA
Found at i:505735 original size:26 final size:26
Alignment explanation
Indices: 505706--505786 Score: 119
Period size: 26 Copynumber: 3.1 Consensus size: 26
505696 AACACACCAA
505706 TATCGCAGCGAAGCTGCCAGTAATAG
1 TATCGCAGCGAAGCTGCCAGTAATAG
505732 TATCGCAGCGAAGCTGCCAGT-ATCAG
1 TATCGCAGCGAAGCTGCCAGTAAT-AG
* * *
505758 CATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCGAAGCTGCCAGTAATAG
505784 TAT
1 TAT
505787 ATGTGGCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.04
26 46 0.94
27 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.19
Consensus pattern (26 bp):
TATCGCAGCGAAGCTGCCAGTAATAG
Found at i:514574 original size:28 final size:28
Alignment explanation
Indices: 514534--514658 Score: 126
Period size: 28 Copynumber: 4.3 Consensus size: 28
514524 ACTATGCAAC
* * * *
514534 ATACAGAATCAGTCTGGGCCTGAGCCCT
1 ATACAGTATCAGTGTGGGCCTTAGCCCA
514562 ATACAGTATCAGTATTGAGTGGGCCTTAGCCCA
1 ATACAGTATCAG---T--GTGGGCCTTAGCCCA
* *
514595 TTACAGTAACAGTGTGGGCCTTAGCCCA
1 ATACAGTATCAGTGTGGGCCTTAGCCCA
*
514623 ATACAGTGA-CAATGTGGGCCTTAGCCCA
1 ATACAGT-ATCAGTGTGGGCCTTAGCCCA
514651 ATACAGTA
1 ATACAGTA
514659 AATAGAATAA
Statistics
Matches: 83, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
27 1 0.01
28 57 0.69
29 1 0.01
30 1 0.01
31 1 0.01
33 22 0.27
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (28 bp):
ATACAGTATCAGTGTGGGCCTTAGCCCA
Found at i:514800 original size:25 final size:26
Alignment explanation
Indices: 514772--514843 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
514762 ATCAATATCA
*
514772 CAGCAAAGCTGCCAG-AATA-AAAGCG
1 CAGCAAAGCTGCCAGTAACAGAAA-CG
* *
514797 CAGCAAAGTTGCCAGTAACAGTAACG
1 CAGCAAAGCTGCCAGTAACAGAAACG
* *
514823 CAGCAAAGCTACCAGCAACAG
1 CAGCAAAGCTGCCAGTAACAG
514844 CATATGTGGC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
25 14 0.36
26 23 0.59
27 2 0.05
ACGTcount: A:0.42, C:0.26, G:0.22, T:0.10
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAGAAACG
Found at i:515020 original size:27 final size:27
Alignment explanation
Indices: 514998--515381 Score: 472
Period size: 27 Copynumber: 14.3 Consensus size: 27
514988 AGGGGTATAA
*
514998 CAGTCATTTCACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
515025 CGGTCAATTTACCCATCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
515052 CAGTCATTTTACCCTTCGA-GGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
515078 CACTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
515105 CAGCCATTTTACCCTTCGA-GGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
515131 CACTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
515158 CGGTCATTTTACCCTTCGA-GGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
515184 CTGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** **
515211 TGGTCATTTTACCCTTTAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
515238 CGGTCATTTTACCCTTC-AGGGGTATTT
1 CAGTCATTTTACCCTTCGA-GGGTATTT
** *
515265 TGGTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
515292 CAGTTGTTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
515319 CAGTCATTTTACCCATCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
515346 TGGTCATTCTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
515373 C-GATCATTT
1 CAG-TCATTT
515382 CCCACGAATC
Statistics
Matches: 309, Mismatches: 42, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 74 0.24
27 234 0.76
28 1 0.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.41
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:515072 original size:54 final size:54
Alignment explanation
Indices: 514998--515381 Score: 472
Period size: 53 Copynumber: 7.2 Consensus size: 54
514988 AGGGGTATAA
* * * *
514998 CAGTCATTTCACCCTTCGAGGGTATTTCGGTCAATTTACCCATCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
* *
515052 CAGTCATTTTACCCTTCGA-GGTATTTCACTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
* * *
515105 CAGCCATTTTACCCTTCGA-GGTATTTCACTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
* *
515158 CGGTCATTTTACCCTTCGA-GGTATTTCTGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
** ** *
515211 TGGTCATTTTACCCTTTAAGGGTATTTCGGTCATTTTACCCTTC-AGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGA-GGGTATTT
** * ** *
515265 TGGTCATTTTACCCTTCAAGGGTATTTCAGTTGTTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
* * ** *
515319 CAGTCATTTTACCCATCGGGGGTATTTTGGTCATTCTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
515373 C-GATCATTT
1 CAG-TCATTT
515382 CCCACGAATC
Statistics
Matches: 294, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
53 147 0.50
54 147 0.50
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.41
Consensus pattern (54 bp):
CAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT
Found at i:522575 original size:25 final size:26
Alignment explanation
Indices: 522547--522596 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
522537 ACAACAATAT
*
522547 CGCAGGAAAGCTGCCAG-AATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
522572 CGCAGCAAAGCTGCCAGTAATAGTA
1 CGCAGCAAAGCTGCCAGTAATAGTA
522597 TATGTGACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.22, G:0.26, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:522805 original size:27 final size:27
Alignment explanation
Indices: 522775--523347 Score: 512
Period size: 27 Copynumber: 21.3 Consensus size: 27
522765 GGGTATAACA
* * *
522775 GTCATTTCACCTTTAGGGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* * *
522802 GTCAATTTACCCATAGAGGGCATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* * *
522829 ATCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
*
522856 GTCATTTTACCCTTCG-GGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* ** *
522882 ATCATTTTACTTTTTGAGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* *
522909 GTAATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* * *
522936 ATCATTTTACCC-CATGAGGGTATTTTG
1 GTCATTTTACCCTTA-GAGGGTATTTCG
* *
522963 GTCATTTTACCCTTTA-AGGGTATATCA
1 GTCATTTTACCC-TTAGAGGGTATTTCG
* *
522990 GTCATTTTACCCTTTGGGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* * * *
523017 ATCATTTTACCTTTTAG-GGATATTTTG
1 GTCATTTTACC-CTTAGAGGGTATTTCG
* * *
523044 GTCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCTTAGAGGGTATTTCG
* *
523071 GTCATTTTACCTTTTAG-GGGTATTTCT
1 GTCATTTTACC-CTTAGAGGGTATTTCG
*
523098 GTCATTTAACCCTTTAG-GGGTATTTCG
1 GTCATTTTACCC-TTAGAGGGTATTTCG
* *
523125 GTCATTTTACCTTTCGAGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* * * * *
523152 ATCATTTTACCCATCGAGGGTGTTTAG
1 GTCATTTTACCCTTAGAGGGTATTTCG
* * * * *
523179 ATTATTTTACCCTTCGGGGGTATTTCA
1 GTCATTTTACCCTTAGAGGGTATTTCG
* ** * * *
523206 GTTATTTTACCAATCGGGGGTATTTTG
1 GTCATTTTACCCTTAGAGGGTATTTCG
*
523233 GTCATTTTA-CCGTACGAGGGTATTTCG
1 GTCATTTTACCCTTA-GAGGGTATTTCG
* * * * *
523260 GTTATTTTACCTTTTGGGGGTATTTTG
1 GTCATTTTACCCTTAGAGGGTATTTCG
523287 GTCATTTTACCCTTAGAGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
*
523314 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTAGAGGGTATTTCG
*
523341 ATCATTT
1 GTCATTT
523348 GCCCATGAAT
Statistics
Matches: 442, Mismatches: 92, Indels: 24
0.79 0.16 0.04
Matches are distributed among these distances:
26 31 0.07
27 403 0.91
28 7 0.02
29 1 0.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTTAGAGGGTATTTCG
Found at i:553197 original size:16 final size:16
Alignment explanation
Indices: 553172--553202 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
553162 CTTGCCATTG
553172 CAAAAAAAAAAAGAAT
1 CAAAAAAAAAAAGAAT
*
553188 CAAAAGAAAAAAGAA
1 CAAAAAAAAAAAGAA
553203 AGGAGCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.06, G:0.10, T:0.03
Consensus pattern (16 bp):
CAAAAAAAAAAAGAAT
Found at i:553211 original size:20 final size:20
Alignment explanation
Indices: 553174--553212 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
553164 TGCCATTGCA
*
553174 AAAAAAAAAAGAATCAAAAG
1 AAAAAAAAAAGAAGCAAAAG
* *
553194 AAAAAAGAAAGGAGCAAAA
1 AAAAAAAAAAGAAGCAAAA
553213 AGGTTACAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAAGAAGCAAAAG
Found at i:554256 original size:25 final size:25
Alignment explanation
Indices: 554218--554274 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
554208 CATGTACAAG
554218 TATGCTCATATGAGCTGT-GAATCGA
1 TATGCTCATATGAGCTGTAG-ATCGA
* *
554243 TATGCTCATTTGAGCTGTAGATCGG
1 TATGCTCATATGAGCTGTAGATCGA
554268 TATGCTC
1 TATGCTC
554275 TCACGAGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (25 bp):
TATGCTCATATGAGCTGTAGATCGA
Found at i:558306 original size:15 final size:15
Alignment explanation
Indices: 558286--558319 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
558276 CATTCTGTAA
*
558286 GGTGCTATTGGTATC
1 GGTGCTATTGATATC
558301 GGTGCTATTGATATC
1 GGTGCTATTGATATC
558316 GGTG
1 GGTG
558320 ATGTCCCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.35, T:0.38
Consensus pattern (15 bp):
GGTGCTATTGATATC
Found at i:568437 original size:27 final size:27
Alignment explanation
Indices: 568405--568760 Score: 441
Period size: 27 Copynumber: 13.3 Consensus size: 27
568395 TCACCATTTA
*
568405 GTCATTTTACCCTTCGGGGGTATTTTG
1 GTCATTTTACCCTTCGAGGGTATTTTG
* **
568432 ATCATTTTACCCTTCGA-GGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTTG
*
568458 GTCATTTTACCCTTCGAGTGTATTTTG
1 GTCATTTTACCCTTCGAGGGTATTTTG
*
568485 GTCATTTTACCCTTCGA-GGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTG
* * *
568511 ATCATTTTACCCTTCGAGGGTACTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTG
*
568538 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTG
568565 GTCATTTTACCCTTCGAGGGTATTTTG
1 GTCATTTTACCCTTCGAGGGTATTTTG
* **
568592 GTCATTTTACCCTTTGAGGGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTTG
* *
568619 GTTATTTTACCCTT-GGGAGGTATTTTG
1 GTCATTTTACCCTTCGAG-GGTATTTTG
* * *
568646 GTCATTTTACGCTTTGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTG
* **
568673 TTCATTTTACCCTTCGAGGGTATTTAC
1 GTCATTTTACCCTTCGAGGGTATTTTG
*
568700 GTCATTTTACCCTTTG-GGAGTATTTTG
1 GTCATTTTACCCTTCGAGG-GTATTTTG
* *
568727 GTCATTTTACCGTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTG
*
568754 ATCATTT
1 GTCATTT
568761 GCCCACGAAT
Statistics
Matches: 284, Mismatches: 39, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
26 50 0.18
27 230 0.81
28 4 0.01
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTTG
Found at i:568641 original size:81 final size:80
Alignment explanation
Indices: 568405--568760 Score: 502
Period size: 81 Copynumber: 4.4 Consensus size: 80
568395 TCACCATTTA
* *
568405 GTCATTTTACCCTTCGGGGGTATTTTGATCATTTTACCCTTCGA-GGTATTTCAGTCATTTTACC
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
568469 CTTCGAGTGTATTTTG
66 CTTCGAG-GTATTTTG
* *
568485 GTCATTTTACCCTTCGA-GGTATTTCGATCATTTTACCCTTCGAGGGTACTTCGGTCATTTTACC
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
*
568549 CTTCGAGGGTATTTCG
66 CTTCGA-GGTATTTTG
* * * *
568565 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTTGAGGGTATTTCAGTTATTTTACC
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
*
568630 CTTGGGAGGTATTTTG
66 CTT-CGAGGTATTTTG
* * *
568646 GTCATTTTACGCTTTGAGGGTATTTCGTTCATTTTACCCTTCGAGGGTATTT-ACGTCATTTTAC
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCA-GTCATTTTAC
* *
568710 CCTTTGGGAGTATTTTG
65 CCTTCGAG-GTATTTTG
*
568727 GTCATTTTACCGTTCGAGGGTATTTCGATCATTT
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTT
568761 GCCCACGAAT
Statistics
Matches: 245, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
79 25 0.10
80 67 0.27
81 151 0.62
82 2 0.01
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (80 bp):
GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
CTTCGAGGTATTTTG
Found at i:578619 original size:23 final size:23
Alignment explanation
Indices: 578591--578649 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
578581 ACAAAGGTTG
* *
578591 ATATTTT-TTTGTTTCATTTTTAT
1 ATATTTTATTTATTT-ATTTATAT
578614 ATATTTTATTTATTTATTTATAT
1 ATATTTTATTTATTTATTTATAT
*
578637 ATTTATTTATTTA
1 ATAT-TTTATTTA
578650 CTGAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (23 bp):
ATATTTTATTTATTTATTTATAT
Found at i:578627 original size:4 final size:4
Alignment explanation
Indices: 578618--578649 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
578608 TTTTATATAT
*
578618 TTTA TTTA TTTA TTTA TATA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
578650 CTGAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:579805 original size:154 final size:152
Alignment explanation
Indices: 579714--580003 Score: 379
Period size: 154 Copynumber: 1.9 Consensus size: 152
579704 TTATTTTCAA
* *
579714 AAAATATTTAATTACCTACTTATATTTTTAACACATATTTTATAATTTATGTATATATGCATATA
1 AAAATATTTAACTACCTACTTATATTTTTAACACATATTTTATAATTTATATATATATG--TATA
* * * * *
579779 TTTATATTTT-CTTTGGTTTTCATAAATGCATTATGTATTTTATATATATATATTTTAATAACCC
64 TATATATTTTCCTTT-GTTTTCATAAATGAATTATCTATTATATATATATATATTATAATAACCC
579843 AAAATTTTATATGTGAATCATATTT
128 AAAATTTTATATGTGAATCATATTT
* * *
579868 AAGATGTTTAACTACCTACTTATATTTTTAACACTTATTTTATAATTTATATATATATGTATATA
1 AAAATATTTAACTACCTACTTATATTTTTAACACATATTTTATAATTTATATATATATGTATATA
* ** * * *
579933 TATATTTTCCTTTGTTTTCATAAATGCATTAGGTATTTTATATATATA-AGTT-TTATAAACCAA
66 TATATTTTCCTTTGTTTTCATAAATGAATTATCTATTATATATATATATA-TTATAATAACCCAA
579996 AATTTTAT
130 AATTTTAT
580004 GTGTAAGTTA
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
151 18 0.14
152 49 0.39
153 4 0.03
154 54 0.43
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.50
Consensus pattern (152 bp):
AAAATATTTAACTACCTACTTATATTTTTAACACATATTTTATAATTTATATATATATGTATATA
TATATTTTCCTTTGTTTTCATAAATGAATTATCTATTATATATATATATATTATAATAACCCAAA
ATTTTATATGTGAATCATATTT
Found at i:579979 original size:152 final size:152
Alignment explanation
Indices: 579720--580003 Score: 457
Period size: 152 Copynumber: 1.9 Consensus size: 152
579710 TCAAAAAATA
* * *
579720 TTTAATTACCTACTTATATTTTTAACACATATTTTATAATTTATGTATATATGCATATATTTATA
1 TTTAACTACCTACTTATATTTTTAACACATATTTTATAATTTATATATATATG-ATATATATATA
* *
579785 TTTTCTTTGGTTTTCATAAATGCATTATGTATTTTATATATATATA-TTTTAATAACCCAAAATT
65 TTTTCTTTGGTTTTCATAAATGCATTAGGTATTTTATATATATA-AGTTTT-ATAAACCAAAATT
579849 TTATATGTGAATCATATTTAAGATG
128 TTATATGTGAATCATATTTAAGATG
*
579874 TTTAACTACCTACTTATATTTTTAACACTTATTTTATAATTTATATATATATG-TATATATATAT
1 TTTAACTACCTACTTATATTTTTAACACATATTTTATAATTTATATATATATGATATATATATAT
579938 TTTCCTTT-GTTTTCATAAATGCATTAGGTATTTTATATATATAAGTTTTATAAACCAAAATTTT
66 TTT-CTTTGGTTTTCATAAATGCATTAGGTATTTTATATATATAAGTTTTATAAACCAAAATTTT
580002 AT
130 AT
580004 GTGTAAGTTA
Statistics
Matches: 122, Mismatches: 6, Indels: 7
0.90 0.04 0.05
Matches are distributed among these distances:
151 17 0.14
152 51 0.42
153 4 0.03
154 50 0.41
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.51
Consensus pattern (152 bp):
TTTAACTACCTACTTATATTTTTAACACATATTTTATAATTTATATATATATGATATATATATAT
TTTCTTTGGTTTTCATAAATGCATTAGGTATTTTATATATATAAGTTTTATAAACCAAAATTTTA
TATGTGAATCATATTTAAGATG
Found at i:580241 original size:15 final size:15
Alignment explanation
Indices: 580221--580254 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
580211 TTTTTATGCC
580221 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
*
580236 ATTGTTGTATTTGTT
1 ATTGTTGTATTTATT
580251 ATTG
1 ATTG
580255 CGACATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.65
Consensus pattern (15 bp):
ATTGTTGTATTTATT
Found at i:593302 original size:88 final size:85
Alignment explanation
Indices: 593149--593317 Score: 221
Period size: 88 Copynumber: 2.0 Consensus size: 85
593139 GTGGAACTTC
* * * * *
593149 AGCCTTATCTCCCTGAGCAGTGGAGTAGGTTGCAAATAGTAGATCGTATCTTCCTGTATTGGCAG
1 AGCCTTATCTCCCTGAGCAGTGGAGTAGGTTGAAAATAGCAGATCGTACCTTCCTGTACTAGCAG
* *
593214 TGAAGTAGATCGAAGATACT
66 TGAAGCAGATCAAAGATACT
* * *
593234 AGCCTTGTCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTAG
1 AGCCTTATCTCCCT--G-AGCAGTGGAGTAGGTTGAAAATAGCAGATCGTACCTTCCTGTACTAG
593299 CAGTGAAGCAGATCAAAGA
63 CAGTGAAGCAGATCAAAGA
593318 CATCAATCTT
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
85 13 0.18
87 1 0.01
88 57 0.80
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (85 bp):
AGCCTTATCTCCCTGAGCAGTGGAGTAGGTTGAAAATAGCAGATCGTACCTTCCTGTACTAGCAG
TGAAGCAGATCAAAGATACT
Found at i:593379 original size:50 final size:50
Alignment explanation
Indices: 593322--593429 Score: 126
Period size: 50 Copynumber: 2.2 Consensus size: 50
593312 CAAAGACATC
* * *
593322 AATCTTATTGCCTTGACGTTGCAATGGAAAAGATTGAAGTCACAACGGCG
1 AATCTTATTGCCCTGACGTTGCAACGGAAAAGATTGAAGCCACAACGGCG
* * * * ** *
593372 AATCTTATTTCCCTGGCGTTGTAGCGGAGTAGATTGAAGCCACGACGGCG
1 AATCTTATTGCCCTGACGTTGCAACGGAAAAGATTGAAGCCACAACGGCG
593422 AATCTTAT
1 AATCTTAT
593430 CTCCATGGCG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (50 bp):
AATCTTATTGCCCTGACGTTGCAACGGAAAAGATTGAAGCCACAACGGCG
Found at i:603041 original size:25 final size:25
Alignment explanation
Indices: 603003--603059 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
602993 CATGTACAAG
603003 TATGCTCATATGAGCTGT-GAATCGA
1 TATGCTCATATGAGCTGTAG-ATCGA
* *
603028 TATGCTCATTTGAGCTGTAGATCGG
1 TATGCTCATATGAGCTGTAGATCGA
603053 TATGCTC
1 TATGCTC
603060 TCACGAGCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (25 bp):
TATGCTCATATGAGCTGTAGATCGA
Found at i:612109 original size:26 final size:27
Alignment explanation
Indices: 612062--612282 Score: 272
Period size: 27 Copynumber: 8.3 Consensus size: 27
612052 TCACCATTTA
*
612062 GTCATTTTACCCTTTGAGGGTATTTCT
1 GTCATTTTACCCTTCGAGGGTATTTCT
612089 GTCATTTTACCCTTCGA-GGTATTT-T
1 GTCATTTTACCCTTCGAGGGTATTTCT
* *
612114 AGTCATTTTACCCTTTGAGGGTATTTCA
1 -GTCATTTTACCCTTCGAGGGTATTTCT
* *
612142 ATCATTTTACCCTTCGA-GGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCT
* *
612168 GTCATTTTACCCTTCGAGGGTACTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCT
612195 GTCATTTTACCCTTC-AGGGGTATTT-T
1 GTCATTTTACCCTTCGA-GGGTATTTCT
* *
612221 GGTCATTTTAACCTTCGAGGGTATTTCG
1 -GTCATTTTACCCTTCGAGGGTATTTCT
* *
612249 GTCATTTTACCCTACGAGGGTATTCCT
1 GTCATTTTACCCTTCGAGGGTATTTCT
*
612276 ATCATTT
1 GTCATTT
612283 GCCCACGAAT
Statistics
Matches: 169, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.01
26 48 0.28
27 119 0.70
28 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTCT
Found at i:612121 original size:53 final size:53
Alignment explanation
Indices: 612058--612272 Score: 304
Period size: 53 Copynumber: 4.0 Consensus size: 53
612048 CATATCACCA
* *
612058 TTTAGTCATTTTACCCTTTGAGGGTATTTCTGTCATTTTACCCTTCGAGGTAT
1 TTTAGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGTAT
* **
612111 TTTAGTCATTTTACCCTTTGAGGGTATTTCAATCATTTTACCCTTCGAGGTAT
1 TTTAGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGTAT
** * *
612164 TTCGGTCATTTTACCCTTCGAGGGTACTTCGGTCATTTTACCCTTCAGGGGTAT
1 TTTAGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTC-GAGGTAT
* * *
612218 TTTGGTCATTTTAACCTTCGAGGGTATTTCGGTCATTTTACCCTACGAGGGTAT
1 TTTAGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGA-GGTAT
612272 T
1 T
612273 CCTATCATTT
Statistics
Matches: 146, Mismatches: 14, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
53 92 0.63
54 54 0.37
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.43
Consensus pattern (53 bp):
TTTAGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGTAT
Found at i:619658 original size:27 final size:27
Alignment explanation
Indices: 619628--620252 Score: 617
Period size: 27 Copynumber: 23.3 Consensus size: 27
619618 GGGCATAACA
* *
619628 GTCATTTCACCTTTCGGGGGTATTTCG
1 GTCATTTTACCTTTCGAGGGTATTTCG
* **
619655 GTCAATTTACCCATCG-GAGGTATTTCG
1 GTCATTTTACCTTTCGAG-GGTATTTCG
* * * *
619682 ATCAATTTACCTTTCGAGTGTATTTCA
1 GTCATTTTACCTTTCGAGGGTATTTCG
619709 GTCATTTTACCCTTT-GA-GGTATTTCG
1 GTCATTTTA-CCTTTCGAGGGTATTTCG
* *
619735 GTCATTTTACTTTTTGAGGGTATTTCG
1 GTCATTTTACCTTTCGAGGGTATTTCG
619762 GTCATTTTACCCTTT-GAGGGTATTTCG
1 GTCATTTTA-CCTTTCGAGGGTATTTCG
* * *
619789 ATCATTTTACCTTTAGAGGGTATTTTG
1 GTCATTTTACCTTTCGAGGGTATTTCG
* *
619816 GTCA-TTTACCCTTCGAGGGTATTTTG
1 GTCATTTTACCTTTCGAGGGTATTTCG
*
619842 GTCATTTTACCCTTTAG-GGGTA-TTCG
1 GTCATTTTA-CCTTTCGAGGGTATTTCG
* * * *
619868 GCCATTTTACCCTTCAAGGGTATTTCA
1 GTCATTTTACCTTTCGAGGGTATTTCG
* * *
619895 GTCATTTTACCTTTTGAAGGTATTTTG
1 GTCATTTTACCTTTCGAGGGTATTTCG
*
619922 GTCATTTTACCTTT-TAGAGGTATTTCG
1 GTCATTTTACCTTTCGAG-GGTATTTCG
* * *
619949 GTCATTTTACCCTTTAG-GGGTATTGCA
1 GTCATTTTA-CCTTTCGAGGGTATTTCG
* * *
619976 ATCATTTTACCCTTCGAGGATATTTCG
1 GTCATTTTACCTTTCGAGGGTATTTCG
* *
620003 ATCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCTTTCGAGGGTATTTCG
* * *
620030 ATCATTTTACCCTTCCG-GGGTATTTTG
1 GTCATTTTA-CCTTTCGAGGGTATTTCG
* * *
620057 GTCATTTTACCCTTCGAGGGCATTTCA
1 GTCATTTTACCTTTCGAGGGTATTTCG
* *
620084 GTTATTTTACCTTTCGAGGGTATTTTG
1 GTCATTTTACCTTTCGAGGGTATTTCG
*
620111 GTCATTTTACCTTTCGAGGATATTTCG
1 GTCATTTTACCTTTCGAGGGTATTTCG
*
620138 AG-CATTTTACCCTTCGAGGGTATTTCG
1 -GTCATTTTACCTTTCGAGGGTATTTCG
* * *
620165 ATCATTTTACCCTTC-AGGGGTATTTTG
1 GTCATTTTACCTTTCGA-GGGTATTTCG
* * *
620192 GTCGTTTTACCCTTCGAGGGTATTTTG
1 GTCATTTTACCTTTCGAGGGTATTTCG
* * *
620219 GTCATTTTACCCTTCGATGATATTTCG
1 GTCATTTTACCTTTCGAGGGTATTTCG
620246 GTCATTT
1 GTCATTT
620253 GCCCACGAAT
Statistics
Matches: 502, Mismatches: 75, Indels: 42
0.81 0.12 0.07
Matches are distributed among these distances:
25 8 0.02
26 76 0.15
27 390 0.78
28 28 0.06
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCTTTCGAGGGTATTTCG
Found at i:622870 original size:8 final size:7
Alignment explanation
Indices: 622844--622868 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
622834 TAAAAAGATC
622844 AAAAGAA
1 AAAAGAA
622851 AAAAGAA
1 AAAAGAA
622858 AAAAGAA
1 AAAAGAA
622865 AAAA
1 AAAA
622869 AGTTACAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:623102 original size:26 final size:23
Alignment explanation
Indices: 623056--623102 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
623046 CCTGAATTAG
*
623056 GTAGTTAAATGTGTTTCTTGAAT
1 GTAGTTAAATGTGTTTATTGAAT
623079 GTAGTATAAATGTTGTGTTATTGA
1 GTAGT-TAAATG-TGT-TTATTGA
623103 TCGTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 6 0.30
25 3 0.15
26 6 0.30
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (23 bp):
GTAGTTAAATGTGTTTATTGAAT
Found at i:646649 original size:25 final size:25
Alignment explanation
Indices: 646586--646648 Score: 110
Period size: 25 Copynumber: 2.6 Consensus size: 25
646576 TTAACGGGAT
*
646586 CATGAAAGTGAAAAGTGTGTCCAGG
1 CATGAAAGTGAAAAGTGTATCCAGG
646611 CATGAAAGTGAAAAGTGTATCCAGG
1 CATGAAAGTGAAAAGTGTATCCAGG
646636 CATG-AAGTGAAAA
1 CATGAAAGTGAAAA
646649 ACTACCATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 9 0.24
25 28 0.76
ACGTcount: A:0.41, C:0.11, G:0.29, T:0.19
Consensus pattern (25 bp):
CATGAAAGTGAAAAGTGTATCCAGG
Found at i:656447 original size:85 final size:85
Alignment explanation
Indices: 656304--656474 Score: 279
Period size: 85 Copynumber: 2.0 Consensus size: 85
656294 AGAGTGGAGA
** * *
656304 ACATAGAGATTTTCGTATAAATTGTTGTGCATCGTTTTGAAAATGGGATGAGCCTGTCATCTGTA
1 ACATAGAGATTTTCGTATAAATTCCTGTGCATCATTTTGAAAACGGGATGAGCCTGTCATCTGTA
656369 TTTTCAATGATCTTAATCTC
66 TTTTCAATGATCTTAATCTC
* * *
656389 ACATAGAGATTTTCTTATAAATTCCTGTGCATCATTTTGGAAACGGGATGAGCCTGTCATTTGTA
1 ACATAGAGATTTTCGTATAAATTCCTGTGCATCATTTTGAAAACGGGATGAGCCTGTCATCTGTA
656454 TTTTCAATGATCTTAATCTC
66 TTTTCAATGATCTTAATCTC
656474 A
1 A
656475 ATTTTTTCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (85 bp):
ACATAGAGATTTTCGTATAAATTCCTGTGCATCATTTTGAAAACGGGATGAGCCTGTCATCTGTA
TTTTCAATGATCTTAATCTC
Found at i:664257 original size:20 final size:19
Alignment explanation
Indices: 664219--664264 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
664209 GCTTGCCATT
664219 GCAAAAAAAAAAAAAAGAA
1 GCAAAAAAAAAAAAAAGAA
* * *
664238 TCAAAAGAAAAAAGACAGAA
1 GCAAAA-AAAAAAAAAAGAA
664258 GCAAAAA
1 GCAAAAA
664265 GGTTACAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.76, C:0.09, G:0.13, T:0.02
Consensus pattern (19 bp):
GCAAAAAAAAAAAAAAGAA
Found at i:674583 original size:25 final size:25
Alignment explanation
Indices: 674555--674661 Score: 101
Period size: 25 Copynumber: 4.3 Consensus size: 25
674545 CATGTACATA
* *
674555 TATGCTCATACGAGCTGTAAATCGG
1 TATGCTCATACGAGCTATAAATCAG
* * **
674580 TATGCTCACT-CGAGCTGTAGATTGG
1 TATGCTCA-TACGAGCTATAAATCAG
*
674605 TATGCTC-TCACGGGCTATAAATCAG
1 TATGCTCAT-ACGAGCTATAAATCAG
* *
674630 TATGCTCTTATGAGCTATAAATCAG
1 TATGCTCATACGAGCTATAAATCAG
674655 TATGCTC
1 TATGCTC
674662 TCATGAGTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
23 1 0.01
25 66 0.96
26 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (25 bp):
TATGCTCATACGAGCTATAAATCAG
Found at i:674662 original size:25 final size:25
Alignment explanation
Indices: 674604--674668 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
674594 CTGTAGATTG
* *
674604 GTATGCTCTCACGGGCTATAAATCA
1 GTATGCTCTCATGAGCTATAAATCA
*
674629 GTATGCTCTTATGAGCTATAAATCA
1 GTATGCTCTCATGAGCTATAAATCA
674654 GTATGCTCTCATGAG
1 GTATGCTCTCATGAG
674669 TTTTGGAGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (25 bp):
GTATGCTCTCATGAGCTATAAATCA
Found at i:678109 original size:18 final size:18
Alignment explanation
Indices: 678086--678126 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
678076 TGAGGAGTGG
678086 ATCCTTGATTCGGGTTGC
1 ATCCTTGATTCGGGTTGC
678104 ATCCTTGATTCGGGTTGC
1 ATCCTTGATTCGGGTTGC
678122 A-CCTT
1 ATCCTT
678127 CCACATGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (18 bp):
ATCCTTGATTCGGGTTGC
Found at i:684973 original size:9 final size:8
Alignment explanation
Indices: 684947--684976 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
684937 ATAAAATTTT
684947 AAATAATG
1 AAATAATG
684955 AAATAATG
1 AAATAATG
684963 AAATAAATG
1 AAAT-AATG
684972 AAATA
1 AAATA
684977 TAGGGCTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (8 bp):
AAATAATG
Found at i:696713 original size:51 final size:51
Alignment explanation
Indices: 696597--696841 Score: 325
Period size: 51 Copynumber: 4.8 Consensus size: 51
696587 ATTATCATTC
* * * * *
696597 GATACACGTAGTAGCCTTCACATAGTACTAGACATGTGATCA--AATTTTTT
1 GATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAA-TATCT
* * *
696647 GGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATCT
1 GATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAATATCT
*
696698 GATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATCT
1 GATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAATATCT
* * * *
696749 GATACACGTAGTAGCCTGCACATAGTACTACACATGCGACCTTTCATTTC-
1 GATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAATATCT
* *
696799 GGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCAT
1 GATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
696842 CACTTTCACT
Statistics
Matches: 174, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
50 75 0.43
51 97 0.56
52 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (51 bp):
GATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAATATCT
Found at i:696805 original size:101 final size:101
Alignment explanation
Indices: 696594--696841 Score: 329
Period size: 101 Copynumber: 2.5 Consensus size: 101
696584 ACTATTATCA
* * * * * * *
696594 TTCGATACACGTAGTAGCCTTCACATAGTACTAGACATGTGATCA-AATTTTTTGGTTCACGTAG
1 TTCGATACACGTAGTAGCCTACACATAGTACTACACATGTGACCATAATTATCTGATACACGTAG
*
696658 TAGCCTGCACATAGTACTACACACGTGACCATTAAT
66 TAGCCTGCACATAGTACTACACACGCGACCATTAAT
* * *
696694 ATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAA-TATCTGATACACGT
1 TTC-GATACACGTAGTAGCCTACACATAGTACTACACATGTGACCA-TAATTATCTGATACACGT
* * *
696758 AGTAGCCTGCACATAGTACTACACATGCGACCTTTCAT
64 AGTAGCCTGCACATAGTACTACACACGCGACCATTAAT
*
696796 TTCGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCAT
1 TTCGATACACGTAGTAGCCTACACATAGTACTACACATGTGACCAT
696842 CACTTTCACT
Statistics
Matches: 128, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
100 3 0.02
101 77 0.60
102 46 0.36
103 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (101 bp):
TTCGATACACGTAGTAGCCTACACATAGTACTACACATGTGACCATAATTATCTGATACACGTAG
TAGCCTGCACATAGTACTACACACGCGACCATTAAT
Found at i:707507 original size:25 final size:24
Alignment explanation
Indices: 707420--707508 Score: 67
Period size: 25 Copynumber: 3.7 Consensus size: 24
707410 CCGTTTGCCC
*
707420 CTTCTTTTTCATTATTTTATTT-TT
1 CTTCTTTTTCTTTATTTT-TTTATT
* * *
707444 ATT-TTTTTCTTTA-TTTATTACT
1 CTTCTTTTTCTTTATTTTTTTATT
* * *
707466 CTTATTTCTACTATATTTTTTTATT
1 CTTCTTT-TTCTTTATTTTTTTATT
707491 CTTCTTTATTCTTTATTT
1 CTTCTTT-TTCTTTATTT
707509 ATATTAATTA
Statistics
Matches: 48, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
21 2 0.04
22 6 0.12
23 12 0.25
24 7 0.15
25 21 0.44
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (24 bp):
CTTCTTTTTCTTTATTTTTTTATT
Found at i:707744 original size:8 final size:8
Alignment explanation
Indices: 707731--707755 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
707721 GCAATGAGTG
707731 TATTTTAT
1 TATTTTAT
707739 TATTTTAT
1 TATTTTAT
707747 TATTTTAT
1 TATTTTAT
707755 T
1 T
707756 CTATAAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:710206 original size:15 final size:14
Alignment explanation
Indices: 710160--710211 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
710150 AGAAACAAAT
710160 AAAAAAATTAGAAA
1 AAAAAAATTAGAAA
*
710174 ACAAAAATTA-AACTA
1 AAAAAAATTAGAA--A
710189 AAAAAAATGTAGAAA
1 AAAAAAAT-TAGAAA
*
710204 AAATAAAT
1 AAAAAAAT
710212 GGCTAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 2 0.06
14 9 0.29
15 16 0.52
16 2 0.06
17 2 0.06
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (14 bp):
AAAAAAATTAGAAA
Found at i:711807 original size:22 final size:22
Alignment explanation
Indices: 711753--711807 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
711743 TGCTAGTTGT
*
711753 CAGAATGGCTAAGAGCCGTAAA
1 CAGAATGGCTAAGAGCCATAAA
* * *
711775 CAGTATAGCTATA-AGCTATAAA
1 CAGAATGGCTA-AGAGCCATAAA
711797 CAGAATGGCTA
1 CAGAATGGCTA
711808 CAAGTCATGA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (22 bp):
CAGAATGGCTAAGAGCCATAAA
Found at i:711879 original size:32 final size:31
Alignment explanation
Indices: 711824--712044 Score: 138
Period size: 32 Copynumber: 7.0 Consensus size: 31
711814 ATGAGTTCAA
* *
711824 TAATGTGATTGGCACAAAGCCATCAGTAGCAG
1 TAATATGATCGGCACAAA-CCATCAGTAGCAG
* * *
711856 TGATATGATCGGCACACAACCATCAGTAACGG
1 TAATATGATCGGCACA-AACCATCAGTAGCAG
* *
711888 TAACATGATCGGCACAAAGCCATCAGTGGCAG
1 TAATATGATCGGCACAAA-CCATCAGTAGCAG
* * * ***
711920 TCATATGATCGACAC-ACCCATCAGTAATGG
1 TAATATGATCGGCACAAACCATCAGTAGCAG
** * * * * * *
711950 CGATATGATTGGCATACAGCTATCGGTAACAG
1 TAATATGATCGGCACA-AACCATCAGTAGCAG
* * *
711982 TAATATGATCGGTACAAAGCCATCAATAGTAG
1 TAATATGATCGGCACAAA-CCATCAGTAGCAG
* * *
712014 TACTATGATCGGTACGAAGCCATCAGTAGCA
1 TAATATGATCGGCAC-AAACCATCAGTAGCA
712045 TCGCAGCAAA
Statistics
Matches: 140, Mismatches: 43, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
30 19 0.14
31 4 0.03
32 113 0.81
33 4 0.03
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (31 bp):
TAATATGATCGGCACAAACCATCAGTAGCAG
Found at i:712095 original size:26 final size:26
Alignment explanation
Indices: 712044--712097 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
712034 CATCAGTAGC
712044 ATCGCAGCAAAGCTGCCAGCAACAGT
1 ATCGCAGCAAAGCTGCCAGCAACAGT
*
712070 ATCGCAGCAAAGCTGCCAGTAACAGT
1 ATCGCAGCAAAGCTGCCAGCAACAGT
712096 AT
1 AT
712098 ATGTGGCCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCCAGCAACAGT
Found at i:712285 original size:25 final size:25
Alignment explanation
Indices: 712228--712328 Score: 159
Period size: 25 Copynumber: 4.1 Consensus size: 25
712218 GTCATACAAA
* *
712228 TCACAGACAAATCAGTCATTT-ACA
1 TCACAGACAAATCAATCATTTAACC
*
712252 TCACAGACAAGTCAATCATTTAACC
1 TCACAGACAAATCAATCATTTAACC
712277 TCACAGACAAATCAATCATTTAACC
1 TCACAGACAAATCAATCATTTAACC
*
712302 TCACAAACAAATCAATCATTTAACC
1 TCACAGACAAATCAATCATTTAACC
712327 TC
1 TC
712329 GAGGGGCAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
24 19 0.27
25 52 0.73
ACGTcount: A:0.43, C:0.28, G:0.05, T:0.25
Consensus pattern (25 bp):
TCACAGACAAATCAATCATTTAACC
Found at i:724571 original size:37 final size:37
Alignment explanation
Indices: 724515--724597 Score: 134
Period size: 37 Copynumber: 2.3 Consensus size: 37
724505 TGTGTCATCC
*
724515 ATGTTAA--TTTTTTTACAAAATAACTTTAGGTATAA
1 ATGTTAATTTTTTTTTACAAAATAACTCTAGGTATAA
*
724550 ATGTTCATTTTTTTTTACAAAATAACTCTAGGTATAA
1 ATGTTAATTTTTTTTTACAAAATAACTCTAGGTATAA
724587 ATGTTAATTTT
1 ATGTTAATTTT
724598 ACACAAAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 6 0.14
37 37 0.86
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.48
Consensus pattern (37 bp):
ATGTTAATTTTTTTTTACAAAATAACTCTAGGTATAA
Found at i:728438 original size:13 final size:13
Alignment explanation
Indices: 728420--728444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
728410 GATTGATGAT
728420 TGTGATACGATAC
1 TGTGATACGATAC
728433 TGTGATACGATA
1 TGTGATACGATA
728445 TATGTGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (13 bp):
TGTGATACGATAC
Found at i:729775 original size:170 final size:170
Alignment explanation
Indices: 729493--729834 Score: 558
Period size: 170 Copynumber: 2.0 Consensus size: 170
729483 TTTGTTTGTA
*
729493 TGCTAGATTAAATTAGATATGCCTCCTAGACGTGTTAATGTTAGAACTAGTGCTCAAGAGGATGG
1 TGCTAGATTAAATTAGATATGCCTCCTAGACGTGCTAATGTTAGAACTAGTGCTCAAGAGGATGG
* * * * * * *
729558 TACATCCTCTGCATCTCTTGTGTCATCGTGTAGAGTGAACATACCTGATGAGGGTGTAGGCCCTC
66 TACATCCTCTGCACCTCCTATGTCACCGCGTAGAGTGAACATACCTGATAAGGATGTAGGCCCTC
* * * *
729623 TTTTGGATGCTATGATAGGAGCATTTCAATGGATTGTTGG
131 TGTTGAATGCTATGATAGGAGCATTTCAACGGATTGCTGG
729663 TGCTAGATTAAATTAGATATGCCTCCTAGACGTGCTAATGTTAGAACTAGTGCTCAAGAGGATGG
1 TGCTAGATTAAATTAGATATGCCTCCTAGACGTGCTAATGTTAGAACTAGTGCTCAAGAGGATGG
729728 TACATCCTCTGCACCTCCTATGTCACCGCGTAGAGTGAACATACCTGATAAGGATGTAGGCCCTC
66 TACATCCTCTGCACCTCCTATGTCACCGCGTAGAGTGAACATACCTGATAAGGATGTAGGCCCTC
* *
729793 TGTTGAATGTTATGATAGGAGCATTTCAGCGGATTGCTGG
131 TGTTGAATGCTATGATAGGAGCATTTCAACGGATTGCTGG
729833 TG
1 TG
729835 TTAACCCTAC
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
170 158 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (170 bp):
TGCTAGATTAAATTAGATATGCCTCCTAGACGTGCTAATGTTAGAACTAGTGCTCAAGAGGATGG
TACATCCTCTGCACCTCCTATGTCACCGCGTAGAGTGAACATACCTGATAAGGATGTAGGCCCTC
TGTTGAATGCTATGATAGGAGCATTTCAACGGATTGCTGG
Found at i:735900 original size:2 final size:2
Alignment explanation
Indices: 735893--735926 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
735883 CCTCATTTTA
735893 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
735927 CTTTCTCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:736397 original size:147 final size:146
Alignment explanation
Indices: 736063--736510 Score: 545
Period size: 147 Copynumber: 3.1 Consensus size: 146
736053 AAAAATTTTC
* * * * * *
736063 TTTAAAAATAATCATTACTTTTCTTAAAAATCAAAAC-TTTATTTCGAAATAGATG---AAAAA-
1 TTTAAAAA-AAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAT
* * * * * *
736123 T-ATGATTTTTTTTTAAATTTTAAACTTTTCCTTTAAAATCAATAAAAAACATATTTTTA-TTTA
65 TAAAGA-TTTGTTTTAAAATTTAAAC-TTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTT
*
736186 AAAAATCTAAA--CTCTCT
128 TAAAATCTAAATTCTCTCT
* *
736203 TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAGCTTTAATTTTGAAATAGTTGAAAAAAAATT
1 TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAATT
*
736268 AAAAATTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTTTA
66 AAAGATTTGTTTT-AAAATTTAAACTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTTTA
*
736333 AAATCTAAATTTTCTCT
130 AAATCTAAATTCTCTCT
**
736350 TTTAAAAAAAGTACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAGAAAAT
1 TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAA-AAAAT
* * *
736415 CAAAGCTTTGTTTTAAAATTTTAACTTTCCTTTAAAATGACTAAAAAAACATATTTTTATTTTTT
65 TAAAGATTTGTTTTAAAATTTAAACTTTCCTTTAAAATGACT-AAAAAACATATTTTTATTTTTT
* *
736480 TAAATCTAAACGTTCTCTTT
129 AAAATCTAAA--TTCTCTCT
736500 TTTAAAAAAAA
1 TTTAAAAAAAA
736511 AAATCAAAAC
Statistics
Matches: 265, Mismatches: 29, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
139 23 0.09
140 23 0.09
143 5 0.02
144 39 0.15
145 25 0.09
147 87 0.33
148 47 0.18
150 16 0.06
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (146 bp):
TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAATT
AAAGATTTGTTTTAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTTTAA
AATCTAAATTCTCTCT
Found at i:737032 original size:2 final size:2
Alignment explanation
Indices: 737025--737058 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
737015 CCTCATTTTA
737025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
737059 CTTTCTCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:737529 original size:147 final size:146
Alignment explanation
Indices: 737195--737642 Score: 545
Period size: 147 Copynumber: 3.1 Consensus size: 146
737185 AAAAATTTTC
* * * * * *
737195 TTTAAAAATAATCATTACTTTTCTTAAAAATCAAAAC-TTTATTTCGAAATAGATG---AAAAA-
1 TTTAAAAA-AAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAT
* * * * * *
737255 T-ATGATTTTTTTTTAAATTTTAAACTTTTCCTTTAAAATCAATAAAAAACATATTTTTA-TTTA
65 TAAAGA-TTTGTTTTAAAATTTAAAC-TTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTT
*
737318 AAAAATCTAAA--CTCTCT
128 TAAAATCTAAATTCTCTCT
* *
737335 TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAGCTTTAATTTTGAAATAGTTGAAAAAAAATT
1 TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAATT
*
737400 AAAAATTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTTTA
66 AAAGATTTGTTTT-AAAATTTAAACTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTTTA
*
737465 AAATCTAAATTTTCTCT
130 AAATCTAAATTCTCTCT
**
737482 TTTAAAAAAAGTACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAGAAAAT
1 TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAA-AAAAT
* * *
737547 CAAAGCTTTGTTTTAAAATTTTAACTTTCCTTTAAAATGACTAAAAAAACATATTTTTATTTTTT
65 TAAAGATTTGTTTTAAAATTTAAACTTTCCTTTAAAATGACT-AAAAAACATATTTTTATTTTTT
* *
737612 TAAATCTAAACGTTCTCTTT
129 AAAATCTAAA--TTCTCTCT
737632 TTTAAAAAAAA
1 TTTAAAAAAAA
737643 AAATCAAAAC
Statistics
Matches: 265, Mismatches: 29, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
139 23 0.09
140 23 0.09
143 5 0.02
144 39 0.15
145 25 0.09
147 87 0.33
148 47 0.18
150 16 0.06
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (146 bp):
TTTAAAAAAAACACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAATT
AAAGATTTGTTTTAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTTTAA
AATCTAAATTCTCTCT
Found at i:743365 original size:12 final size:12
Alignment explanation
Indices: 743345--743376 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
743335 CTAGAACTTC
*
743345 AACATAACAATT
1 AACACAACAATT
743357 AACACAACAATT
1 AACACAACAATT
743369 AACACAAC
1 AACACAAC
743377 CATACATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.59, C:0.25, G:0.00, T:0.16
Consensus pattern (12 bp):
AACACAACAATT
Found at i:745918 original size:49 final size:49
Alignment explanation
Indices: 745846--745943 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
745836 AATCACAAAT
745846 TTCATAAATTCAATTCTCACATGATTCACATACATACCTGTACTAGTTC
1 TTCATAAATTCAATTCTCACATGATTCACATACATACCTGTACTAGTTC
745895 TTCATAAATTCAATTCTCACATGATTCACATACATACCTGTACTAGTTC
1 TTCATAAATTCAATTCTCACATGATTCACATACATACCTGTACTAGTTC
745944 ATATCAAACT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (49 bp):
TTCATAAATTCAATTCTCACATGATTCACATACATACCTGTACTAGTTC
Found at i:746080 original size:16 final size:16
Alignment explanation
Indices: 746059--746091 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
746049 AACCACCTCC
746059 ATCTCATATCTCATAT
1 ATCTCATATCTCATAT
746075 ATCTCATATCTCATAT
1 ATCTCATATCTCATAT
746091 A
1 A
746092 GATGCTCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (16 bp):
ATCTCATATCTCATAT
Found at i:747582 original size:376 final size:376
Alignment explanation
Indices: 746889--747639 Score: 1263
Period size: 376 Copynumber: 2.0 Consensus size: 376
746879 ACTGGAAACG
*
746889 GGTTGTTACAACTCTCCCCCTTAGGAATTTTCATCCTTGAAAATCTTACCAGAGAATAGGTGAAG
1 GGTTGTTACAACTCTCCCCCTTAGGAATTTTCATCCTTGAAAATATTACCAGAGAATAGGTGAAG
* * *
746954 GTACTATTTTCTCATATCTTCTTCGGGTTCCCACATAGCCTCTTCAATTCCTTGACGTTGCCAAA
66 GTACTATTTTCTCATAGCTTCTTCGAGTTCCCACATAGCCTCTTCAATTCCGTGACGTTGCCAAA
* *
747019 GAACCTTCACTAAAGCTATGCTCTTGTTTCTTAGCTCTTTAACCTCTCGGGCAATAATTCTGATT
131 GAACCTTCACTAAAGCTATGCTCTTGTTTCTTAGCTCTTTAACCTCTCGGGCAACAATTCTGATC
*
747084 GGTTCTTCATTATACAACATATCAAGTTGAATTTCAACCTCTGCCGGAGAAATTATGTGCGAAGG
196 GGTTCTTCATTATACAACATATCAAGTTGAATTTCAACCTCTGCCAGAGAAATTATGTGCGAAGG
* * * *
747149 GTCTGATTGGTACCGTTGTAACATGGATACGTGAAACACATTATGGATCTTTTCTAGTTCTGACA
261 GTCTGATTGGTACCATCGCAACATGGATACATGAAACACATTATGGATCTTTTCTAGTTCTGACA
*
747214 ATAAAGCCAAATGATATGCCACTGGCCCTATTCTCTCAATAATCTCATACA
326 ATAAAGCCAAACGATATGCCACTGGCCCTATTCTCTCAATAATCTCATACA
*
747265 GGTTGTTACAACTCTCCCCCCTTAGGAATTTTCATCCTTGAAAATATTACCAGAGAATAGGTTAA
1 GGTTGTTACAACTCT-CCCCCTTAGGAATTTTCATCCTTGAAAATATTACCAGAGAATAGGTGAA
* * *
747330 GGTACTATTTTCTCATAGCTTCTTCGAGTTTCCACATAGCCTCTTCAATTTCGTGACGTTTCCAA
65 GGTACTATTTTCTCATAGCTTCTTCGAGTTCCCACATAGCCTCTTCAATTCCGTGACGTTGCCAA
* * * *
747395 AGAACCTTCACTAATGCTATGCTCTTGTTTCTTAGCTTTTTAATCTCTC-GGCCACAATTCTGAT
130 AGAACCTTCACTAAAGCTATGCTCTTGTTTCTTAGCTCTTTAACCTCTCGGGCAACAATTCTGAT
* *
747459 CGGTTCTTCATTATA-AGACATGTCAGGTTGAATTTCAACCTCTGCCAGAGAAATTATGTGCGAA
195 CGGTTCTTCATTATACA-ACATATCAAGTTGAATTTCAACCTCTGCCAGAGAAATTATGTGCGAA
747523 GGGTCTGATTGGTACCATCGCAACATGGATACATGAAACACATTATGGATCTTTTCTAGTTCTGA
259 GGGTCTGATTGGTACCATCGCAACATGGATACATGAAACACATTATGGATCTTTTCTAGTTCTGA
*
747588 CAATAAAGCTAAACGATATGCCACTGGCCCTATTCTCTCAATAATCTCATAC
324 CAATAAAGCCAAACGATATGCCACTGGCCCTATTCTCTCAATAATCTCATAC
747640 GTCCCGATAA
Statistics
Matches: 350, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
375 1 0.00
376 197 0.56
377 152 0.43
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (376 bp):
GGTTGTTACAACTCTCCCCCTTAGGAATTTTCATCCTTGAAAATATTACCAGAGAATAGGTGAAG
GTACTATTTTCTCATAGCTTCTTCGAGTTCCCACATAGCCTCTTCAATTCCGTGACGTTGCCAAA
GAACCTTCACTAAAGCTATGCTCTTGTTTCTTAGCTCTTTAACCTCTCGGGCAACAATTCTGATC
GGTTCTTCATTATACAACATATCAAGTTGAATTTCAACCTCTGCCAGAGAAATTATGTGCGAAGG
GTCTGATTGGTACCATCGCAACATGGATACATGAAACACATTATGGATCTTTTCTAGTTCTGACA
ATAAAGCCAAACGATATGCCACTGGCCCTATTCTCTCAATAATCTCATACA
Found at i:755511 original size:43 final size:43
Alignment explanation
Indices: 755450--755655 Score: 232
Period size: 43 Copynumber: 4.7 Consensus size: 43
755440 CGCCGCTAAA
* * ** *
755450 TTTAGCGACACTTTTATCACAAACGACGCTAAAGGTCATGGTC
1 TTTAGCGACGCTTTTATCACAAACGCCGCTAAAGAACATGATC
* * ** *
755493 TTTAGCGGCGCTTTTATCACAAACACCGCTAAAGGTCATGAGC
1 TTTAGCGACGCTTTTATCACAAACGCCGCTAAAGAACATGATC
* * *
755536 TTTAGCAACGCTTTTGTCACAAACGCCACTAAAGAACATGATC
1 TTTAGCGACGCTTTTATCACAAACGCCGCTAAAGAACATGATC
* *
755579 TTTAGCGACGCTTTTGTCACAAACGCCGCTAAAAAACATGATC
1 TTTAGCGACGCTTTTATCACAAACGCCGCTAAAGAACATGATC
**
755622 TTTAGCGGCACTTTTTTTATCACAAACGCCGCTA
1 TTTAGC-G-AC-GCTTTTATCACAAACGCCGCTA
755656 TAGTACAAAC
Statistics
Matches: 140, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
43 118 0.84
44 1 0.01
45 2 0.01
46 19 0.14
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TTTAGCGACGCTTTTATCACAAACGCCGCTAAAGAACATGATC
Found at i:756131 original size:43 final size:43
Alignment explanation
Indices: 756059--756141 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
756049 CACATTGCAA
* ** *
756059 GGTAATAAAAAATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAAATACAATACATTAACTTAATCAAGGAAATCTT
* *
756102 GGTAATAAAAGATATAATACATTAACTTAATCAAGGAAAT
1 GGTAATAAAAAATACAATACATTAACTTAATCAAGGAAAT
756142 TTAATCAAGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.31
Consensus pattern (43 bp):
GGTAATAAAAAATACAATACATTAACTTAATCAAGGAAATCTT
Found at i:756147 original size:14 final size:14
Alignment explanation
Indices: 756128--756155 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
756118 ATACATTAAC
756128 TTAATCAAGGAAAT
1 TTAATCAAGGAAAT
756142 TTAATCAAGGAAAT
1 TTAATCAAGGAAAT
756156 CTTGTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
TTAATCAAGGAAAT
Found at i:758114 original size:21 final size:21
Alignment explanation
Indices: 758081--758126 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
758071 GCATGTAAAA
758081 AAACCAGACCAATACTAAGCT
1 AAACCAGACCAATACTAAGCT
* *
758102 AAACTAGATCAATACTAAGCT
1 AAACCAGACCAATACTAAGCT
758123 AAAC
1 AAAC
758127 ATATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.24, G:0.09, T:0.17
Consensus pattern (21 bp):
AAACCAGACCAATACTAAGCT
Found at i:760992 original size:41 final size:41
Alignment explanation
Indices: 760879--761334 Score: 453
Period size: 41 Copynumber: 11.2 Consensus size: 41
760869 TAGATTATAT
* * * * *
760879 TAAATCCCTAAGCATTAGCGGCGCTTTTTTAAAAACGCCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
** * *
760920 TAAA--AATAGAGAATTAGCGGCGCTACTTCAAAAACGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * *
760960 TAAAGCCCTGAGTATTAGCGGTGCTTCCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * ** * *
761001 TAAATCCCTGATCATTAGTTGCGCTT-TCCCAAAAACGCCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCT-TCAAAAACGCCGC
* * *
761042 TAAATCCCTGATCATTAGCAGCGCTT-TTCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTT-CAAAAACGCCGC
* * *
761083 TAAAGCCCTGATCATTAGCGGCGCTTTTTCAGAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * * *
761124 TAAAG-ACTCGAGCATCAGCGGCGCTTCTTAAAAAATGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * *
761165 TAAA-ACCTGAGCATTAGTGGCGCTT-TTCTAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTTC-AAAAACGCCGC
** *
761205 TAAA--AATAGAGCATTAGCGGCGCTTCTTCAAAAACGTCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
761245 TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * *
761286 TAAAGCCCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
*
761327 TAATGCCC
1 TAAAGCCC
761335 CGAAAACTCA
Statistics
Matches: 349, Mismatches: 53, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.01
40 91 0.26
41 250 0.72
42 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
Found at i:761436 original size:39 final size:40
Alignment explanation
Indices: 761388--761464 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 40
761378 GCGCTTTTTG
* * *
761388 GAAAACGCCGCTAATGCTC-ATTTTTAGCGGTGTTTTTCA
1 GAAAACGCCGCTAATACTCGATCTTTAGCGGCGTTTTTCA
* *
761427 GAAAGCGCCGCTAATACTCGATCTTTAGTGGCGTTTTT
1 GAAAACGCCGCTAATACTCGATCTTTAGCGGCGTTTTT
761465 TATCCAAACG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
39 17 0.53
40 15 0.47
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (40 bp):
GAAAACGCCGCTAATACTCGATCTTTAGCGGCGTTTTTCA
Found at i:761463 original size:40 final size:38
Alignment explanation
Indices: 761375--761464 Score: 99
Period size: 39 Copynumber: 2.3 Consensus size: 38
761365 TAGGTTTTTT
* * *
761375 GTGGCGCTTTTTGGAAAACGCCGCTAATGCTCATTTTTA
1 GTGGCG-TTTTTAGAAAACGCCGCTAATACTCATCTTTA
* * *
761414 GCGGTGTTTTTCAGAAAGCGCCGCTAATACTCGATCTTTA
1 GTGGCGTTTTT-AGAAAACGCCGCTAATACTC-ATCTTTA
761454 GTGGCGTTTTT
1 GTGGCGTTTTT
761465 TATCCAAACG
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
38 5 0.12
39 21 0.51
40 15 0.37
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (38 bp):
GTGGCGTTTTTAGAAAACGCCGCTAATACTCATCTTTA
Found at i:763514 original size:27 final size:27
Alignment explanation
Indices: 763482--763588 Score: 153
Period size: 27 Copynumber: 4.0 Consensus size: 27
763472 TAAATTATTG
*
763482 AATACCCTCGAAGGGTAAAATTACCAA
1 AATACCCTCGAAGGGTAAAATTACCGA
*
763509 AATACCCTCGAAGGGTAAAATTATCGA
1 AATACCCTCGAAGGGTAAAATTACCGA
* *
763536 AATACCCCCGAAGGGTAAAATTACTGA
1 AATACCCTCGAAGGGTAAAATTACCGA
*
763563 AATAACCCT-GAAGGGTAAAATGACCG
1 AAT-ACCCTCGAAGGGTAAAATTACCG
763589 TTATACCCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 67 0.94
28 4 0.06
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
AATACCCTCGAAGGGTAAAATTACCGA
Found at i:767178 original size:43 final size:43
Alignment explanation
Indices: 767112--767239 Score: 113
Period size: 43 Copynumber: 3.0 Consensus size: 43
767102 CATAGGATTC
*
767112 CAATGTGTGCTTT-CGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CAATATGTG-TTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
**
767155 CAACT-TGTGTTTACGTGTAAGACC-CTGTCTAAGACAG-TGGCAT
1 CAA-TATGTGTTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* * * * *
767198 CGATATGTGATTACATGTAAAACCA-TTCTGGGACGTTGGCAT
1 CAATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
767240 TGTTTGAGCC
Statistics
Matches: 69, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
41 1 0.01
42 17 0.25
43 49 0.71
44 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CAATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:768378 original size:29 final size:31
Alignment explanation
Indices: 768335--768393 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
768325 GGAGTAAAAT
768335 GATGATTACATGTTCAAATGTGTATAGGTTG
1 GATGATTACATGTTCAAATGTGTATAGGTTG
*
768366 GATGATTA-A-GTTCGAATGTGTATAGGTT
1 GATGATTACATGTTCAAATGTGTATAGGTT
768394 ATTTTGATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 18 0.67
30 1 0.04
31 8 0.30
ACGTcount: A:0.29, C:0.05, G:0.27, T:0.39
Consensus pattern (31 bp):
GATGATTACATGTTCAAATGTGTATAGGTTG
Found at i:770965 original size:57 final size:58
Alignment explanation
Indices: 770861--770988 Score: 195
Period size: 57 Copynumber: 2.2 Consensus size: 58
770851 ACTTCTGATC
* * * *
770861 AATGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGACA
1 AATGATAAGTGATAAGTGGTAGCTTTAGCCACACTTATCTGACCAATGACAAGAGACA
* *
770919 AGTGATAAGTGATAAGTGGTAGC-TTAGCCACACTTATCTGACCAATGACAAGAGATA
1 AATGATAAGTGATAAGTGGTAGCTTTAGCCACACTTATCTGACCAATGACAAGAGACA
770976 AATGATAAGTGAT
1 AATGATAAGTGAT
770989 TCCGTGTAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 42 0.67
58 21 0.33
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (58 bp):
AATGATAAGTGATAAGTGGTAGCTTTAGCCACACTTATCTGACCAATGACAAGAGACA
Found at i:772849 original size:61 final size:62
Alignment explanation
Indices: 772759--772877 Score: 188
Period size: 61 Copynumber: 1.9 Consensus size: 62
772749 CAAAAAACAT
*
772759 CCCTAGAAATCAAATGTTAAAACTAATTAAATTAGGCGATGAAATTTGGA-GTTCAACAAAAC
1 CCCTAGAAATCAAATGTTAAAACTAATTAAATTAGGCGATCAAATTT-GATGTTCAACAAAAC
* *
772821 CCCTAGAAATTAAA-GTTAAAACTAATTAAATTAGGTGATCAAATTTGATGTTCAACA
1 CCCTAGAAATCAAATGTTAAAACTAATTAAATTAGGCGATCAAATTTGATGTTCAACA
772878 TTTGATTGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
60 2 0.04
61 38 0.72
62 13 0.25
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (62 bp):
CCCTAGAAATCAAATGTTAAAACTAATTAAATTAGGCGATCAAATTTGATGTTCAACAAAAC
Found at i:775888 original size:4 final size:4
Alignment explanation
Indices: 775879--775908 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
775869 CTCAAATTAA
775879 AATT AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AA
775909 AAGTAAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:776532 original size:22 final size:22
Alignment explanation
Indices: 776506--776547 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
776496 TAATCTCAAT
776506 TTTTTATTTTAAGAATTTAATC
1 TTTTTATTTTAAGAATTTAATC
**
776528 TTTTTATTTTTTGAATTTAA
1 TTTTTATTTTAAGAATTTAA
776548 AAATTTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (22 bp):
TTTTTATTTTAAGAATTTAATC
Found at i:778351 original size:21 final size:19
Alignment explanation
Indices: 778313--778351 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
778303 GTAGATTTTA
778313 GCAAAATTAAACACAAATT
1 GCAAAATTAAACACAAATT
*
778332 GCAACAATTATAACATAAAT
1 GCAA-AATTA-AACACAAAT
778352 AAACTAGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.23
Consensus pattern (19 bp):
GCAAAATTAAACACAAATT
Found at i:789325 original size:2 final size:2
Alignment explanation
Indices: 789318--789342 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
789308 AGTTATTTTA
789318 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
789343 AACATATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:792644 original size:13 final size:13
Alignment explanation
Indices: 792626--792652 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
792616 ACCTAAGCTC
792626 TATTTCTCCAATT
1 TATTTCTCCAATT
792639 TATTTCTCCAATT
1 TATTTCTCCAATT
792652 T
1 T
792653 TGGTTCTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTTCTCCAATT
Found at i:797838 original size:20 final size:20
Alignment explanation
Indices: 797812--797863 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
797802 TTGGAGTAGG
*
797812 AATATCGATACCTTAGGAAA
1 AATATCGATACCTTAAGAAA
*
797832 TATATCGATACCTTAAGAAA
1 AATATCGATACCTTAAGAAA
797852 AATATCGATACC
1 AATATCGATACC
797864 AAATCAATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (20 bp):
AATATCGATACCTTAAGAAA
Found at i:808655 original size:11 final size:12
Alignment explanation
Indices: 808620--808653 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
808610 TAGTAGTTTC
808620 TCGAAAAAAAAT
1 TCGAAAAAAAAT
808632 TCGAAAAAAAAT
1 TCGAAAAAAAAT
*
808644 TTGAAAAAAA
1 TCGAAAAAAA
808654 TTAGTTTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.68, C:0.06, G:0.09, T:0.18
Consensus pattern (12 bp):
TCGAAAAAAAAT
Found at i:808712 original size:14 final size:14
Alignment explanation
Indices: 808693--808725 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
808683 ATATCAAGTT
808693 GTGAAAAAAAATTC
1 GTGAAAAAAAATTC
*
808707 GTG-AAAAAAATTT
1 GTGAAAAAAAATTC
808720 GTGAAA
1 GTGAAA
808726 GCAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.55, C:0.03, G:0.18, T:0.24
Consensus pattern (14 bp):
GTGAAAAAAAATTC
Found at i:814889 original size:23 final size:23
Alignment explanation
Indices: 814832--814890 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
814822 CATCACTTAA
814832 ATCATACCTTTCATAATCAGGAAT
1 ATCATACCTTTCATAAT-AGGAAT
* *
814856 ATTCATA-CTTTGATCAAT-GGTAT
1 A-TCATACCTTTCAT-AATAGGAAT
814879 ATCATACCTTTC
1 ATCATACCTTTC
814891 CATATTTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 5 0.17
23 9 0.31
24 7 0.24
25 8 0.28
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.39
Consensus pattern (23 bp):
ATCATACCTTTCATAATAGGAAT
Found at i:814995 original size:29 final size:29
Alignment explanation
Indices: 814952--815326 Score: 228
Period size: 29 Copynumber: 12.9 Consensus size: 29
814942 GTGTGCTAAA
* * *
814952 CGATAGTTGTAACCATCCCTTTTCATATT
1 CGATAGTCGAAACTATCCCTTTTCATATT
* * *
814981 CGATGGTCGAAACCATCCCTTTTCATTAAT
1 CGATAGTCGAAACTATCCCTTTTCA-TATT
* * ** * *
815011 CAATGGTCGTCACCATCCCTTTTCATA-G
1 CGATAGTCGAAACTATCCCTTTTCATATT
* * * ** * *
815039 CTGATGGTC-ATCACCATCTTTTTTTATAAT
1 C-GATAGTCGA-AACTATCCCTTTTCATATT
* * * *
815069 CGCTAGCCGAAGCTATCCCTTTTCACATT
1 CGATAGTCGAAACTATCCCTTTTCATATT
* * *
815098 TGATAGCCGAAGCTATCCCTTTTCATATT
1 CGATAGTCGAAACTATCCCTTTTCATATT
* *
815127 CGATAG-CAGAAGCTATCCCTTTTCACATT
1 CGATAGTC-GAAACTATCCCTTTTCATATT
*
815156 CGATAG-CTGAAGCTATCCCTTTTCATATT
1 CGATAGTC-GAAACTATCCCTTTTCATATT
* *
815185 CGATAGCCGAAGCTATCCCTTTTCATATT
1 CGATAGTCGAAACTATCCCTTTTCATATT
*
815214 TGATAGTC-AAAGCTATCCCTTTTCATATT
1 CGATAGTCGAAA-CTATCCCTTTTCATATT
* * *
815243 CTATGGT--AATCACCATCCCTTTTCATAGTT
1 CGATAGTCGAA--ACTATCCCTTTTCATA-TT
* ** *
815273 -GATGGTCGTCA-TCATCCCTTTTCATAAT
1 CGATAGTCGAAACT-ATCCCTTTTCATATT
* *
815301 CGATAGCCGAAGCTATCCCTTTTCAT
1 CGATAGTCGAAACTATCCCTTTTCAT
815327 TATCTAAGGT
Statistics
Matches: 281, Mismatches: 49, Indels: 32
0.78 0.14 0.09
Matches are distributed among these distances:
28 7 0.02
29 242 0.86
30 32 0.11
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (29 bp):
CGATAGTCGAAACTATCCCTTTTCATATT
Found at i:815019 original size:30 final size:30
Alignment explanation
Indices: 814962--815036 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
814952 CGATAGTTGT
* *
814962 AACCATCCCTTTTCA-TATTCGATGGTCGA
1 AACCATCCCTTTTCATTAATCAATGGTCGA
*
814991 AACCATCCCTTTTCATTAATCAATGGTCGT
1 AACCATCCCTTTTCATTAATCAATGGTCGA
*
815021 CACCATCCCTTTTCAT
1 AACCATCCCTTTTCAT
815037 AGCTGATGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 15 0.37
30 26 0.63
ACGTcount: A:0.24, C:0.31, G:0.09, T:0.36
Consensus pattern (30 bp):
AACCATCCCTTTTCATTAATCAATGGTCGA
Found at i:815139 original size:58 final size:58
Alignment explanation
Indices: 815072--815325 Score: 300
Period size: 58 Copynumber: 4.4 Consensus size: 58
815062 TTATAATCGC
815072 TAGCCGAAGCTATCCCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCATATTCGA
1 TAGCCGAAGCTATCCCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCATATTCGA
* * *
815130 TAGCAGAAGCTATCCCTTTTCACATTCGATAGCTGAAGCTATCCCTTTTCATATTCGA
1 TAGCCGAAGCTATCCCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCATATTCGA
* * * *
815188 TAGCCGAAGCTATCCCTTTTCATATTTGATAGTCAAAGCTATCCCTTTTCATATTCTA
1 TAGCCGAAGCTATCCCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCATATTCGA
* * * * * * * * *
815246 T-G--GTAATCACCATCCCTTTTCATAGTTGATGGTCGTCATC-ATCCCTTTTCATAATCGA
1 TAGCCG-AA--GCTATCCCTTTTCACATTTGATAGCCG-AAGCTATCCCTTTTCATATTCGA
815304 TAGCCGAAGCTATCCCTTTTCA
1 TAGCCGAAGCTATCCCTTTTCA
815326 TTATCTAAGG
Statistics
Matches: 168, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
55 1 0.01
56 2 0.01
57 1 0.01
58 158 0.94
59 3 0.02
60 2 0.01
61 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.36
Consensus pattern (58 bp):
TAGCCGAAGCTATCCCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCATATTCGA
Found at i:815168 original size:87 final size:87
Alignment explanation
Indices: 815072--815325 Score: 300
Period size: 87 Copynumber: 2.9 Consensus size: 87
815062 TTATAATCGC
* *
815072 TAGCCGAAGCTATCCCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCATATTCGATAGCAGA
1 TAGCTGAAGCTATCCCTTTTCATATTTGATAGCCGAAGCTATCCCTTTTCATATTCGATAGCAGA
815137 AGCTATCCCTTTTCACATTCGA
66 AGCTATCCCTTTTCACATTCGA
* *
815159 TAGCTGAAGCTATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATAGTCA-
1 TAGCTGAAGCTATCCCTTTTCATATTTGATAGCCGAAGCTATCCCTTTTCATATTCGATAG-CAG
* *
815223 AAGCTATCCCTTTTCATATTCTA
65 AAGCTATCCCTTTTCACATTCGA
* * * * * * * * *
815246 T-GGT-AATCACCATCCCTTTTCATAGTTGATGGTCGTCATC-ATCCCTTTTCATAATCGATAGC
1 TAGCTGAA--GCTATCCCTTTTCATATTTGATAGCCG-AAGCTATCCCTTTTCATATTCGATAGC
*
815308 CGAAGCTATCCCTTTTCA
63 AGAAGCTATCCCTTTTCA
815326 TTATCTAAGG
Statistics
Matches: 144, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
85 2 0.01
86 3 0.02
87 135 0.94
88 4 0.03
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.36
Consensus pattern (87 bp):
TAGCTGAAGCTATCCCTTTTCATATTTGATAGCCGAAGCTATCCCTTTTCATATTCGATAGCAGA
AGCTATCCCTTTTCACATTCGA
Found at i:816499 original size:71 final size:72
Alignment explanation
Indices: 816403--816545 Score: 279
Period size: 71 Copynumber: 2.0 Consensus size: 72
816393 ATATTTATAG
816403 CTTGGTTTATAGAAATGAGGTCCCGATACCTCATTTTCTAAAACCACTTAACCTTAGACTCTTAC
1 CTTGGTTTATAGAAATGAGGTCCCGATACCTCATTTTCTAAAACCACTTAACCTTAGACTCTTAC
816468 CATTTGA
66 CATTTGA
816475 CTTGGTTTAT-GAAATGAGGTCCCGATACCTCATTTTCTAAAACCACTTAACCTTAGACTCTTAC
1 CTTGGTTTATAGAAATGAGGTCCCGATACCTCATTTTCTAAAACCACTTAACCTTAGACTCTTAC
816539 CATTTGA
66 CATTTGA
816546 ACTTAATAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 61 0.86
72 10 0.14
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (72 bp):
CTTGGTTTATAGAAATGAGGTCCCGATACCTCATTTTCTAAAACCACTTAACCTTAGACTCTTAC
CATTTGA
Done.