Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: scaffold1906
Parameters: 2 7 7 80 10 50 1000
Length: 1213
Tables: 1
This is table 1 of 1 ( 14 repeats found )
Click on indices to view alignment
Table Explanation
| Indices | Period
Size | Copy
Number | Consensus
Size | Percent
Matches | Percent
Indels | Score | A | C | G | T | Entropy
(0-2) |
| 1--635 | 46 | 13.8 | 46 | 88 | 1 | 932 | 24 | 15 | 30 | 28 | 1.96 |
| 568--707 | 72 | 1.9 | 72 | 86 | 0 | 199 | 30 | 14 | 30 | 25 | 1.95 |
| 640--893 | 46 | 5.5 | 46 | 86 | 0 | 328 | 25 | 15 | 29 | 29 | 1.96 |
| 522--753 | 118 | 2.0 | 118 | 92 | 0 | 383 | 27 | 15 | 30 | 27 | 1.96 |
| 476--799 | 164 | 2.0 | 164 | 88 | 0 | 486 | 27 | 14 | 30 | 28 | 1.95 |
| 640--893 | 92 | 2.8 | 92 | 87 | 0 | 364 | 25 | 15 | 29 | 29 | 1.96 |
| 430--845 | 210 | 2.0 | 210 | 88 | 0 | 625 | 26 | 14 | 30 | 28 | 1.95 |
| 640--893 | 138 | 1.8 | 138 | 87 | 0 | 382 | 25 | 15 | 29 | 29 | 1.96 |
| 871--916 | 23 | 2.0 | 23 | 91 | 0 | 74 | 36 | 10 | 32 | 19 | 1.87 |
| 737--1053 | 161 | 2.0 | 160 | 88 | 1 | 474 | 25 | 15 | 29 | 29 | 1.96 |
| 829--962 | 69 | 1.9 | 69 | 87 | 0 | 196 | 28 | 15 | 28 | 27 | 1.96 |
| 898--1213 | 46 | 6.9 | 46 | 84 | 3 | 395 | 24 | 16 | 28 | 30 | 1.96 |
| 698--1099 | 206 | 1.9 | 207 | 86 | 1 | 574 | 25 | 15 | 29 | 30 | 1.96 |
| 894--1213 | 92 | 3.5 | 92 | 83 | 2 | 446 | 24 | 16 | 29 | 30 | 1.96 |
Tables: 1
The End!