Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold562
Parameters: 2 7 7 80 10 50 1000
Length:  106325

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
440--471
13
2.5
13
94
0
55
31
6
0
62
1.20
33921--33954
17
2.1
16
88
5
50
38
0
14
47
1.45
42560--42597
19
2.0
20
94
5
69
18
34
10
36
1.85
47245--47302
27
2.2
26
84
6
73
65
0
22
12
1.25
47294--47345
13
4.0
12
76
16
50
63
0
23
13
1.29
48143--48167
13
1.9
13
100
0
50
76
8
0
16
1.02
48215--48266
16
3.4
15
82
10
61
71
1
9
17
1.22
48215--48266
15
3.5
14
85
12
68
71
1
9
17
1.22
53202--53239
19
2.0
20
94
5
69
36
10
34
18
1.85
52020--53302
656
2.0
656
95
0
2293
37
16
18
28
1.92
53147--54899
876
2.0
877
87
3
2499
34
18
18
28
1.95
55199--55250
27
1.9
27
84
7
70
7
21
5
65
1.40
58927--58956
15
2.0
15
100
0
60
26
13
6
53
1.64
60371--60415
21
2.2
20
84
15
56
64
0
24
11
1.26
62360--62395
18
2.1
18
89
5
56
41
0
11
47
1.39
63179--63254
34
2.2
34
95
0
134
35
7
13
43
1.73
72926--72975
23
2.2
22
79
10
55
50
14
12
24
1.76
75317--75364
12
4.2
12
86
10
73
66
14
6
12
1.42
75317--75361
11
4.0
11
85
2
54
68
13
6
11
1.37
75321--75362
22
1.9
22
95
0
75
76
9
4
9
1.15
75403--75455
12
3.9
14
87
12
83
71
0
9
18
1.12
75406--75454
14
3.7
13
86
13
73
73
0
8
18
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105557--105668
23
4.9
23
78
0
125
36
26
6
30
1.81
105557--105668
46
2.4
46
89
0
170
36
26
6
30
1.81

Tables:   1

The End!